AlfalfaGEDB | MS.gene049348

M. sativa cultivar XinJiangDaYe / MS.gene049348

KEGG: K13415
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF00560.36 PF08263.15 PF12799.10 PF13516.9 PF13855.9 PF20141.2

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049348.t1	XP_003602504.1	94.4	1188	66	0	1	1188	1	1188	0.00E+00	1459.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049348.t1	Q8L899	71.0	1191	327	12	11	1188	21	1206	1.4e-266	921.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049348.t1	G7JAC3	94.4	1188	66	0	1	1188	1	1188	0.0e+00	1459.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049348	MS.gene06467	0.965755	5.11E-125	-1.69E-46
MS.gene049348	MS.gene31027	0.929788	4.20E-93	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene049348	MS.gene34980	PPI
MS.gene049348	MS.gene51630	PPI
MS.gene049348	MS.gene63517	PPI
MS.gene049348	MS.gene009462	PPI
MS.gene049348	MS.gene08366	PPI
MS.gene049348	MS.gene028205	PPI
MS.gene049348	MS.gene023252	PPI
MS.gene049348	MS.gene56262	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049348.t1	MTR_3g095100	98.569	1188	17	0	1	1188	1	1188	0.0	2388
MS.gene049348.t1	MTR_3g009400	48.506	1171	540	22	33	1158	37	1189	0.0	1007
MS.gene049348.t1	MTR_1g100787	34.969	1304	647	35	10	1152	7	1270	0.0	584
MS.gene049348.t1	MTR_7g059285	34.112	1070	603	29	135	1151	54	1074	1.88e-156	497
MS.gene049348.t1	MTR_2g078810	35.481	1009	572	25	167	1152	98	1050	2.68e-156	495
MS.gene049348.t1	MTR_2g078810	32.947	604	319	18	38	578	42	622	4.65e-51	197
MS.gene049348.t1	MTR_2g078810	29.261	352	203	7	411	737	78	408	4.04e-20	97.4
MS.gene049348.t1	MTR_2g078810	35.481	1009	572	25	167	1152	118	1070	3.83e-156	495
MS.gene049348.t1	MTR_2g078810	32.947	604	319	18	38	578	62	642	4.57e-51	197
MS.gene049348.t1	MTR_2g078810	29.226	349	201	7	411	734	98	425	3.89e-20	97.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049348.t1	AT4G39400	67.406	1172	364	10	26	1184	27	1193	0.0	1511
MS.gene049348.t1	AT1G55610	49.237	1180	514	30	33	1183	33	1156	0.0	1018
MS.gene049348.t1	AT1G55610	49.237	1180	514	30	33	1183	33	1156	0.0	1018
MS.gene049348.t1	AT3G13380	49.302	1146	519	23	29	1150	28	1135	0.0	1005
MS.gene049348.t1	AT2G01950	49.801	1006	457	16	190	1160	146	1138	0.0	924
MS.gene049348.t1	AT2G01950	31.953	676	304	23	38	575	43	700	1.19e-57	218
MS.gene049348.t1	AT5G07280	36.587	1219	617	33	35	1150	27	1192	0.0	582
MS.gene049348.t1	AT1G17230	33.918	1141	634	28	38	1152	31	1077	9.45e-163	513
MS.gene049348.t1	AT1G17230	33.918	1141	634	28	38	1152	31	1077	4.53e-162	512
MS.gene049348.t1	AT1G74360	35.146	1030	532	27	238	1162	106	1104	1.18e-156	497

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Find 353 sgRNAs with CRISPR-Local

Find 374 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTCAATCTCCATATT+GGG	0.306067	3.1:+75843905	None:intergenic
AAACCCTAGTGAAATTGCAA+GGG	0.632392	3.1:+75845352	None:intergenic
AAACTCACGTGGAATATCAC+CGG	0.635934	3.1:+75846262	None:intergenic
AAAGATCATTGAACCATTAG+TGG	0.406255	3.1:+75845302	None:intergenic
AAAGCTCAATCTCCATATTG+GGG	0.619166	3.1:+75843906	None:intergenic
AAAGCTCCGCTAAACGCGCC+GGG	0.534186	3.1:+75846327	None:intergenic
AAAGCTCTAAATCATGGTTG+AGG	0.564346	3.1:+75846657	None:intergenic
AAAGCTCTGATAGTATTCTG+GGG	0.660059	3.1:+75844105	None:intergenic
AAAGGTAGCTTGTGCCTGTT+TGG	0.419149	3.1:-75843873	MS.gene049348:CDS
AAAGGTATGGTGCTAAGTGG+AGG	0.623763	3.1:+75847188	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGCTCAATCTCCATATT+GGG	+	chr3.1:75847036-75847055	None:intergenic	30.0%
AAAGATCATTGAACCATTAG+TGG	+	chr3.1:75845639-75845658	None:intergenic	30.0%
AGAGTTTGGGAATAATTTGA+AGG	-	chr3.1:75844926-75844945	MS.gene049348:CDS	30.0%
AGATGAAGAAGATTCTTACA+AGG	+	chr3.1:75844492-75844511	None:intergenic	30.0%
ATAAAGAAACTGTAACGAAC+CGG	+	chr3.1:75844562-75844581	None:intergenic	30.0%
ATTGTCAATGTAGCTATCAA+TGG	+	chr3.1:75846164-75846183	None:intergenic	30.0%
ATTTCAGCAAACAAGTACTT+CGG	-	chr3.1:75844444-75844463	MS.gene049348:CDS	30.0%
CTGAGTAATAATTCTTTCTC+CGG	-	chr3.1:75845317-75845336	MS.gene049348:CDS	30.0%
CTTTCATACAATAAGCTACA+AGG	-	chr3.1:75845809-75845828	MS.gene049348:CDS	30.0%
CTTTCCGAAAACAAAATCAA+CGG	-	chr3.1:75844237-75844256	MS.gene049348:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	75843697	75847263	75843697	ID=MS.gene049348
chr3.1	mRNA	75843697	75847263	75843697	ID=MS.gene049348.t1;Parent=MS.gene049348
chr3.1	exon	75843697	75847263	75843697	ID=MS.gene049348.t1.exon1;Parent=MS.gene049348.t1
chr3.1	CDS	75843697	75847263	75843697	ID=cds.MS.gene049348.t1;Parent=MS.gene049348.t1

Gene Sequence

>MS.gene049348

ATGAAACCCTTGTATAGCACAAACACTCTCCTACTCCTCCTTTCACTATTCCTCCTCCACTTAGCACCATACCTTTCTGCTTCATCTTCTCAAAGAGACCCAACTTCACAACTTCTCAACTTCAAACAATCTCTCCCAAACCCATCTCTTCTCCATAACTGGCTCCCAAATAATAACCCATGTTCATTCACTGGTATCACCTGCAACCAAACCACCATAACTTCTATAGACCTCACCTCAATCCCTCTCAACACCAACCTCACCACCATCACAACCTATCTCCTCACCCTCCCTCATCTCCAAATCCTCACCCTCAAATCCACTAACATCACATCCTCACCACCCATTCCCCTCTCCCACACCAAGTGCACCTCCACCCTCACCACACTAGATCTATCACTAAACACTCTCTCTTCATCTTTCTCAGACCTCTCCTTCCTCTCAACATGCTTAAGCCTTAAGTCCCTCAACCTCTCCAACAACGACCTCCAATTCGATTCTCCTAAATGGGGTCTCGCTTCATCTCTTAAAACTCTCGACCTTTCCGAAAACAAAATCAACGGTCCAAATTTCTTCCACTGGTTCCTCAACCATGATTTAGAGCTTTTATCTCTCAGAGGTAACAAAATCACCGGAGAAATCGACTTCTCCGGTTACAACAATCTCCATCACTTAGACATTTCTTCCAACAATTTCTCTGTTTCAATTCCATCCTTTGGTGAATGTTTATCTCTACAGTACCTCGATATTTCAGCAAACAAGTACTTCGGTGACATTTCAAGAACACTGTCACCTTGTAAGAATCTTCTTCATCTCAACGTTTCTGGTAACCAGTTCACCGGTCCGGTACCTGAACTTCCCTCCGGTTCGTTACAGTTTCTTTATCTTGCTGCAAATCACTTCGCCGGAAAAATCCCGGCGCGTTTAGCGGAGCTTTGTTCAACTCTCGTGGAGCTTGATCTTTCTTCTAATAATCTCACCGGTGATATTCCACGTGAGTTTGGCGCGTGTACTTCGTTGACATCGTTTGATATTTCGAGCAACACCTTCGCCGGTGAACTTCAGGTGGAAGTTTTATCGGAGATGAGTAGTTTGAAAGAGCTTGCGGTGGCGTTTAACGACTTTGTGGGCCCAGTTCCGGTGTCGCTGTCGAAGATAACGGGTTTGGAATTGTTAGATCTGAGTTCGAATAACTTCACCGGAACGATTCCGAAGTGGCTTTGTGAAGAAGAGTTTGGGAATAATTTGAAGGAACTTTACTTGCAAAATAACGGTTTCACGGGTTTTATTCCACCAACGCTAAGTAACTGTTCAAATCTCGTGGCTCTTGATTTGAGTTTCAATTATCTAACTGGAACCATTCCTCCAAGTTTGGGTTCTCTTTCGAAGCTTCGTGATTTAATCATGTGGTTGAATCAGCTTCATGGGGAAATTCCTCAAGAGCTTGGAAATATGGAGAGTTTAGAGAATTTGATTCTTGATTTCAATGAGTTGAGTGGAGGTATTCCATCTGGGTTGGTGAATTGCAGTAAGTTGAATTGGATCTCGTTGTCGAATAACAGGCTCAGTGGTGAGATTCCGGCATGGATTGGGAAGCTTTCGAATTTGGCTATTTTGAAGCTGAGTAATAATTCTTTCTCCGGTAGGGTTCCACCGGAGTTAGGAGATTGCCCTAGCTTGTTATGGTTGGATCTGAATACAAATTCACTCACAGGAACAATACCGCCGGAGTTGTTTAAGCAGTCGGGGAAAGTCACGGTGAATTTCATTAACGGGAAGACGTATGTTTACATTAAGAATGATGGAAGTAGAGAGTGCCATGGAGCTGGGAACTTGCTGGAGTTTGCAGGGATTAGTCAGAAAAAATTGAACAGAATTTCGACGAAGAACCCTTGCAATTTCACTAGGGTTTATGGAGGTAAGCTTCAGCCAACGTTTACCACTAATGGTTCAATGATCTTTTTGGATATTTCACACAACATGTTGTCTGGTACTATTCCTAAGGAAATTGGTGAAATGCACTATCTCTACATTTTGCATTTGAGCTATAATAACTTGTCCGGTAGCATTCCTCAAGAGCTTGGTACGATGAAGAATCTCAACATTCTTGATCTTTCATACAATAAGCTACAAGGTCAAATTCCACAAGCCTTGGCAGGGCTTTCACTGCTCACTGAGATTGACTTGTCCAACAATTTTCTCTACGGATTAATTCCGGAATCCGGTCAATTCGACACTTTTCCGCCTGTTAAGTTTCAGAACAACTCTGGTCTCTGCGGGGTCCCTCTTCCTCCGTGTGGGAAAGACGCCGGTGCTAATGCTGCACAGCATCAGAAGTCTCATAGGAGACAGGCATCCCTTGTAGGGAGTGTGGCAATGGGATTGCTTTTCTCTCTTTTCTGCGTTTTCGGTTTGATCATTATTGCTATTGAGACAAGAAAGAGGAGGAAGAAAAAGGAGGCTGCCATTGATAGCTACATTGACAATTCTCATTCTGGTAATGGCAATAATTCTGGCTGGAAACTGACCAGTGCCCGCGAAGCTCTCAGCATAAATCTTGCAACGTTTGAAAAGCCCCTCCGAAAGCTCACTTTTGCGGATCTTCTAGAGGCAACCAATGGCTTTCACAACGATAGTCTCATTGGTTCCGGTGGTTTCGGTGACGTGTATAAAGCTCAGCTGAAAGATGGAAGTGTTGTGGCCATCAAGAAACTAATACATGTAAGTGGACAAGGGGACAGGGAATTCACAGCAGAGATGGAAACCATTGGCAAAATCAAGCACAGAAACCTTGTTCCTCTTTTGGGATACTGCAAAGTTGGAGAGGAAAGATTGTTGGTCTATGAGTACATGAAATATGGAAGTCTAGAAGATGTCCTGCATGACCCGAAGAAAGCTGGGATCAAGATGAATTGGTCAGTGAGGAGGAAGATTGCAATTGGAGCTGCAAGAGGATTGGCTTTTCTTCACCATAGTTGTATCCCACACATCATTCATAGAGACATGAAATCAAGCAATGTGTTGCTTGATGAAAATTTGGAGGCAAGGGTCTCTGATTTTGGAATGGCTAGGATGATGAGCGCTATGGATACTCATTTAAGCGTAAGCACGTTGGCAGGCACACCGGGTTATGTTCCCCCAGAATACTATCAGAGCTTTAGATGCTCAACTAAAGGTGATGTTTATAGTTATGGTGTAGTTTTGTTGGAGTTGCTGACGGGGAGAAGACCGACGGACTCGGCTGATTTTGGTGATAACAATCTTGTTGGATGGGTTAAACAACATGCCAAACTTAAAATAAGTGATGTTTTTGATCCAGAGCTAATGAAAGAAGACCCCAATATGGAGATTGAGCTTTTACAGCATTTAAAGGTAGCTTGTGCCTGTTTGGATGATAGACCTTGGCGGCGACCTACAATGATTCAAGTCATGGCAATGTTCAAGGAAATACAAGCAGGTTCTGGGATGGATTCCCAATCTACTATAGCCACTGAAGATGAAGGTTTCAATGCCGTTGAGATGGTTGAAATGAGCATTAAAGAAGTCCCTGAATTAACCAAGCATTAG

Protein sequence

>MS.gene049348.t1

MKPLYSTNTLLLLLSLFLLHLAPYLSASSSQRDPTSQLLNFKQSLPNPSLLHNWLPNNNPCSFTGITCNQTTITSIDLTSIPLNTNLTTITTYLLTLPHLQILTLKSTNITSSPPIPLSHTKCTSTLTTLDLSLNTLSSSFSDLSFLSTCLSLKSLNLSNNDLQFDSPKWGLASSLKTLDLSENKINGPNFFHWFLNHDLELLSLRGNKITGEIDFSGYNNLHHLDISSNNFSVSIPSFGECLSLQYLDISANKYFGDISRTLSPCKNLLHLNVSGNQFTGPVPELPSGSLQFLYLAANHFAGKIPARLAELCSTLVELDLSSNNLTGDIPREFGACTSLTSFDISSNTFAGELQVEVLSEMSSLKELAVAFNDFVGPVPVSLSKITGLELLDLSSNNFTGTIPKWLCEEEFGNNLKELYLQNNGFTGFIPPTLSNCSNLVALDLSFNYLTGTIPPSLGSLSKLRDLIMWLNQLHGEIPQELGNMESLENLILDFNELSGGIPSGLVNCSKLNWISLSNNRLSGEIPAWIGKLSNLAILKLSNNSFSGRVPPELGDCPSLLWLDLNTNSLTGTIPPELFKQSGKVTVNFINGKTYVYIKNDGSRECHGAGNLLEFAGISQKKLNRISTKNPCNFTRVYGGKLQPTFTTNGSMIFLDISHNMLSGTIPKEIGEMHYLYILHLSYNNLSGSIPQELGTMKNLNILDLSYNKLQGQIPQALAGLSLLTEIDLSNNFLYGLIPESGQFDTFPPVKFQNNSGLCGVPLPPCGKDAGANAAQHQKSHRRQASLVGSVAMGLLFSLFCVFGLIIIAIETRKRRKKKEAAIDSYIDNSHSGNGNNSGWKLTSAREALSINLATFEKPLRKLTFADLLEATNGFHNDSLIGSGGFGDVYKAQLKDGSVVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSLEDVLHDPKKAGIKMNWSVRRKIAIGAARGLAFLHHSCIPHIIHRDMKSSNVLLDENLEARVSDFGMARMMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGRRPTDSADFGDNNLVGWVKQHAKLKISDVFDPELMKEDPNMEIELLQHLKVACACLDDRPWRRPTMIQVMAMFKEIQAGSGMDSQSTIATEDEGFNAVEMVEMSIKEVPELTKH