AlfalfaGEDB | MS.gene63517

M. sativa cultivar XinJiangDaYe / MS.gene63517

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF12799.10 PF13516.9 PF13855.9 PF20141.2

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63517.t1	PNX96718.1	89.6	888	91	1	1	887	1	888	3.90E-262	914.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63517.t1	Q9LJF3	76.8	893	199	5	2	887	266	1157	2.1e-200	700.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63517.t1	A0A2K3N0Z5	89.6	888	91	1	1	887	1	888	2.8e-262	914.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene002089	MS.gene63517	PPI
MS.gene013371	MS.gene63517	PPI
MS.gene028205	MS.gene63517	PPI
MS.gene049348	MS.gene63517	PPI
MS.gene06467	MS.gene63517	PPI
MS.gene072019	MS.gene63517	PPI
MS.gene63517	MS.gene34980	PPI
MS.gene63517	MS.gene31027	PPI
MS.gene63517	MS.gene08366	PPI
MS.gene63517	MS.gene047157	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63517.t1	MTR_3g009400	96.738	889	28	1	1	888	316	1204	0.0	1753
MS.gene63517.t1	MTR_3g009400	31.336	434	243	10	37	439	205	614	1.96e-34	143
MS.gene63517.t1	MTR_3g009400	30.575	435	268	14	38	462	106	516	3.50e-22	103
MS.gene63517.t1	MTR_3g095100	56.078	872	367	10	14	873	291	1158	0.0	956
MS.gene63517.t1	MTR_3g095100	30.464	302	177	10	8	296	458	739	1.81e-19	94.7
MS.gene63517.t1	MTR_3g095100	28.788	462	253	16	88	483	100	551	4.00e-19	93.6
MS.gene63517.t1	MTR_3g095100	34.426	244	114	10	2	226	525	741	5.86e-15	80.1
MS.gene63517.t1	MTR_1g100787	39.145	889	464	23	12	868	428	1271	7.24e-163	509
MS.gene63517.t1	MTR_1g100787	33.261	460	282	9	8	461	305	745	5.11e-45	176
MS.gene63517.t1	MTR_1g100787	31.947	529	279	15	2	460	107	624	2.34e-44	174

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63517.t1	AT1G55610	72.018	897	237	6	2	887	266	1159	0.0	1318
MS.gene63517.t1	AT1G55610	32.886	447	265	9	7	441	146	569	3.98e-45	177
MS.gene63517.t1	AT1G55610	30.959	365	215	11	113	462	127	469	1.25e-27	121
MS.gene63517.t1	AT1G55610	72.018	897	237	6	2	887	266	1159	0.0	1318
MS.gene63517.t1	AT1G55610	32.886	447	265	9	7	441	146	569	3.98e-45	177
MS.gene63517.t1	AT1G55610	30.959	365	215	11	113	462	127	469	1.25e-27	121
MS.gene63517.t1	AT3G13380	72.036	894	240	6	2	887	266	1157	0.0	1285
MS.gene63517.t1	AT3G13380	33.107	441	261	11	13	441	151	569	9.50e-46	179
MS.gene63517.t1	AT4G39400	53.656	889	392	12	11	882	290	1175	0.0	890
MS.gene63517.t1	AT4G39400	30.372	484	271	14	13	483	123	553	8.28e-34	140

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Find 201 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCCTGAAAGCCTTGG+TGG	0.503214	3.3:+4718607	MS.gene63517:CDS
AAACTCTGATAGTATTCTGG+TGG	0.670983	3.3:-4719657	None:intergenic
AAAGGTGATGTTTATAGTTA+TGG	0.407784	3.3:+4719693	MS.gene63517:CDS
AAATTGTACCAACATGATTT+GGG	0.387822	3.3:+4718063	MS.gene63517:CDS
AACCCACCAAGAACTGCACC+AGG	0.605544	3.3:-4717389	None:intergenic
AACCTTCAAGGATTCATCCC+TGG	0.539540	3.3:+4718667	MS.gene63517:CDS
AACGGACAAGAATGTACCAT+AGG	0.641338	3.3:-4718421	None:intergenic
AACTAATTGTCGAGGAGCCG+GGG	0.532468	3.3:+4718351	MS.gene63517:CDS
AAGAAACTCATTCGTGTCAC+AGG	0.517570	3.3:+4719231	MS.gene63517:CDS
AAGATTCCTGGTGCAGTTCT+TGG	0.357329	3.3:+4717383	MS.gene63517:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTGTAAAATTGGAGATGAA+AGG	+	chr3.3:4719334-4719353	MS.gene63517:CDS	30.0%
AGTTGAGTTTGAGGATATAA+GGG	+	chr3.3:4718378-4718397	MS.gene63517:CDS	30.0%
ATAGAGATTGTAATGATCCA+GGG	-	chr3.3:4718687-4718706	None:intergenic	30.0%
ATGATAACAATCTTGTTGGA+TGG	+	chr3.3:4719775-4719794	MS.gene63517:CDS	30.0%
ATTTCCAGTTATGTTGTTGA+AGG	-	chr3.3:4717663-4717682	None:intergenic	30.0%
CAAATTGTACCAACATGATT+TGG	+	chr3.3:4718062-4718081	MS.gene63517:CDS	30.0%
CAACAAACAAGAGAAAGAAA+AGG	-	chr3.3:4718921-4718940	None:intergenic	30.0%
CAAGAGAATTGTTACCTAAT+TGG	-	chr3.3:4718162-4718181	None:intergenic	30.0%
CAATTTGCAACAATTGACAA+AGG	-	chr3.3:4717689-4717708	None:intergenic	30.0%
CATAGAGATAATTCTTAGCT+AGG	-	chr3.3:4717583-4717602	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	4717380	4720046	4717380	ID=MS.gene63517
chr3.3	mRNA	4717380	4720046	4717380	ID=MS.gene63517.t1;Parent=MS.gene63517
chr3.3	exon	4717380	4720046	4717380	ID=MS.gene63517.t1.exon1;Parent=MS.gene63517.t1
chr3.3	CDS	4717380	4720046	4717380	ID=cds.MS.gene63517.t1;Parent=MS.gene63517.t1

Gene Sequence

>MS.gene63517

ATGAAGATTCCTGGTGCAGTTCTTGGTGGGTTGAGGAATTTGAAGGAACTTTATTTAGGGAATAATCTTCTTTATGGAGAAATATCTAAGGAGCTTGGAAGTCTTTGTAAGAGTTTGGAAATTCTTGATCTTTCTAAGAATAAACTCTCTGGTGAGTTTCCTTTGGTTTTTGGAAAATGTTCATCTCTGAAGAGTCTTAACCTAGCTAAGAATTATCTCTATGGTAATTTTCTTGAAAATGTTGTTACCAAACTGGCTAGTCTTAGGTATCTCTCTGTGTCCTTCAACAACATAACTGGAAATGTTCCTTTGTCAATTGTTGCAAATTGTACACAACTTCAGGTTCTTGACCTGAGTTCAAACACTTTCATCGGTAACATTCCCTCGATGTTCTGTCCTTCAAAATTGGAGAAGTTGCTATTAGCTAATAATTACCTTTCAGGGACTGTGCCTGCAAAACTCGGTGAATGCAAGAGTTTGAGAACTATTGATTTTAGCTTCAACAATTTGAGTGGTTCAATACCTTTAGAAGTTTGGTTTTTGCCTAATCTTTCTGACTTGATTATGTGGGCAAATAGTCTCACTGGTGAGATTCCAGAAGGAATTTGTGTCAATGGAGGGAACCTTGAGACATTGATTCTTAACAACAATCTCATTTCTGGTTCAATTCCCAAGTCCATTGCAAATTGTACCAACATGATTTGGGTTTCGCTTGCTAGTAACCGCATTACCGGAGAAATACCCGTTGGCATCGGGAATCTGAATGAACTTGCTATTCTCCAATTAGGTAACAATTCTCTTGTTGGAAAGATTCCTCCCGAGATTGGAATGTGTAAGAGACTGATATGGTTGGACTTGACGAGCAATAATCTCACCGGTACTATTCCATCCGAGCTTGCAAATCAAGCTGGATCGGTTATTCCGGGGAGTGTTTCGGGTAAGCAATTTGCATTTGTGAGAAATGAAGGCGGAACTAATTGTCGAGGAGCCGGGGGACTAGTTGAGTTTGAGGATATAAGGGCAGAGAGGCTTGAAGATTTTCCTATGGTACATTCTTGTCCGTTAACAAGAATATATTCTGGTTATACAGTTTATACTTTTACCACCAATGGAAGCATGATTTACCTTGACCTTTCCTACAACTTATTGTCAGGGACTATTTCGGACAAATTCGGTGCAATGGCCTATTTGCAGGTCTTGAATCTAGGACACAATAGGCTCAATGGAAAAATTCCTGAAAGCCTTGGTGGTTTAAAAGCTATAGGAGTGCTTGATTTATCTCATAATAACCTTCAAGGATTCATCCCTGGATCATTACAATCTCTATCATTTCTCAGTGACTTTGATGTGTCAAATAATAACCTAAGTGGATTGATTCCTTCTGGAGGTCAGCTAACAACTTTCCCGGCATCTAGATACCAAAACAACTCGAACCTTTGTGGTGTTCCGTTACCAACATGCGGCGCTTCAAATCACACGGTAGCTGTTCGTACGTGGAAGAAGAAGCAACCTATTGCAGTTTTGACAGCCATGTGCCTCCTTTTCTTTCTCTTGTTTGTTGTTGTGCTTGTACTGGCTTTGTATCGAGTTCAAAAGACTCGGAAGAAGGAAGAATTGAGAGAAAAATATATAGAAAGTCTTCCGACTTCTGGTAGCAGTAGTTGGAAGCTCTCTGGCTTTCCTGAGCCTCTGAGCATCAACGTTGCTACGTTCGAGAAGCCTCTGCGTAAGTTGACGTTCGCGCATCTCCTCGAGGCTACTAACGGTTTCAGCGCCGAAAGCTTGATTGGTTCGGGAGGTTTCGGTGAAGTCTATAAGGCTAAGTTGAAAGACGGCAGTGTTGTTGCAATCAAGAAACTCATTCGTGTCACAGGTCAGGGAGACAGAGAGTTCATAGCCGAGATGGAAACGATCGGGAAAATTAAGCACCGGAACCTTGTTCCACTTCTTGGTTACTGTAAAATTGGAGATGAAAGGCTACTTGTGTATGAGTACATGAAATATGGAAGTTTAGAAACTGTTCTACACGAGAGAATGAAAAGTTCAGAGCTTGCTTGGGAAACAAGAAAGAAGATAGCACTAGGATCAGCAAGAGGTCTTGCATTTCTTCATCATAGTTGCATACCTCATATTATACATAGAGACATGAAGTCAAGCAATATTCTTCTTGACGAAAATTTCGAGGCTAGAGTTTCAGATTTCGGTATGGCAAGATTGGTTAATGCTCTCGACACTCATCTCACAGTTAGCACGCTTGCAGGAACACCAGGTTATGTACCACCAGAATACTATCAGAGTTTTCGATGCACTGCAAAAGGTGATGTTTATAGTTATGGTGTCATACTGCTAGAACTTCTATCAGGGAAAAGACCGATCAACTCGTCCGAGTTTGGCGATGATAACAATCTTGTTGGATGGTCTAAGAAGCTTTATAGAGAAAGAAGAATTAGTGAAATACTTGATCCTGAATTGGTTATGCAAAGTTCTAGTGAAGGTGAACTTTTTCAATATTTGAAAATTGCTTTTGAATGTTTAGAAGAAAGACCGTACCGGCGTCCGACAATGATACAAGTGATGGCAATGTTTAAAGAGCTTCAAGTTGATACAGATAATGATAGTGTTGCTGATGGTTACTCTATGAAAGACAGTGTTATTGATGAAGCATGA

Protein sequence

>MS.gene63517.t1

MKIPGAVLGGLRNLKELYLGNNLLYGEISKELGSLCKSLEILDLSKNKLSGEFPLVFGKCSSLKSLNLAKNYLYGNFLENVVTKLASLRYLSVSFNNITGNVPLSIVANCTQLQVLDLSSNTFIGNIPSMFCPSKLEKLLLANNYLSGTVPAKLGECKSLRTIDFSFNNLSGSIPLEVWFLPNLSDLIMWANSLTGEIPEGICVNGGNLETLILNNNLISGSIPKSIANCTNMIWVSLASNRITGEIPVGIGNLNELAILQLGNNSLVGKIPPEIGMCKRLIWLDLTSNNLTGTIPSELANQAGSVIPGSVSGKQFAFVRNEGGTNCRGAGGLVEFEDIRAERLEDFPMVHSCPLTRIYSGYTVYTFTTNGSMIYLDLSYNLLSGTISDKFGAMAYLQVLNLGHNRLNGKIPESLGGLKAIGVLDLSHNNLQGFIPGSLQSLSFLSDFDVSNNNLSGLIPSGGQLTTFPASRYQNNSNLCGVPLPTCGASNHTVAVRTWKKKQPIAVLTAMCLLFFLLFVVVLVLALYRVQKTRKKEELREKYIESLPTSGSSSWKLSGFPEPLSINVATFEKPLRKLTFAHLLEATNGFSAESLIGSGGFGEVYKAKLKDGSVVAIKKLIRVTGQGDREFIAEMETIGKIKHRNLVPLLGYCKIGDERLLVYEYMKYGSLETVLHERMKSSELAWETRKKIALGSARGLAFLHHSCIPHIIHRDMKSSNILLDENFEARVSDFGMARLVNALDTHLTVSTLAGTPGYVPPEYYQSFRCTAKGDVYSYGVILLELLSGKRPINSSEFGDDNNLVGWSKKLYRERRISEILDPELVMQSSSEGELFQYLKIAFECLEERPYRRPTMIQVMAMFKELQVDTDNDSVADGYSMKDSVIDEA