Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049384.t1 | XP_013461534.1 | 100 | 288 | 0 | 0 | 1 | 288 | 62 | 349 | 4.80E-153 | 550.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049384.t1 | Q8GUJ1 | 77.5 | 289 | 64 | 1 | 1 | 288 | 62 | 350 | 7.1e-121 | 434.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049384.t1 | A0A072V0L7 | 100.0 | 288 | 0 | 0 | 1 | 288 | 62 | 349 | 3.5e-153 | 550.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049384 | MS.gene059337 | 0.855632 | 5.54E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049384.t1 | MTR_3g094260 | 100.000 | 288 | 0 | 0 | 1 | 288 | 62 | 349 | 0.0 | 588 |
| MS.gene049384.t1 | MTR_3g094270 | 82.639 | 288 | 46 | 1 | 1 | 288 | 62 | 345 | 2.94e-177 | 493 |
| MS.gene049384.t1 | MTR_4g058860 | 62.976 | 289 | 102 | 3 | 1 | 286 | 60 | 346 | 1.54e-125 | 362 |
| MS.gene049384.t1 | MTR_2g094640 | 60.627 | 287 | 110 | 2 | 1 | 286 | 62 | 346 | 2.05e-124 | 359 |
| MS.gene049384.t1 | MTR_1g026590 | 40.260 | 231 | 138 | 0 | 14 | 244 | 78 | 308 | 1.35e-49 | 167 |
| MS.gene049384.t1 | MTR_8g092190 | 40.455 | 220 | 130 | 1 | 14 | 232 | 78 | 297 | 8.34e-49 | 165 |
| MS.gene049384.t1 | MTR_3g095130 | 36.364 | 231 | 146 | 1 | 3 | 232 | 18 | 248 | 2.26e-48 | 162 |
| MS.gene049384.t1 | MTR_3g095130 | 36.364 | 231 | 146 | 1 | 3 | 232 | 67 | 297 | 7.73e-48 | 162 |
| MS.gene049384.t1 | MTR_5g004620 | 36.475 | 244 | 153 | 1 | 17 | 260 | 84 | 325 | 2.82e-44 | 154 |
| MS.gene049384.t1 | MTR_1g098240 | 40.000 | 210 | 125 | 1 | 24 | 232 | 88 | 297 | 9.41e-43 | 149 |
| MS.gene049384.t1 | MTR_2g038410 | 29.958 | 237 | 162 | 1 | 7 | 243 | 116 | 348 | 1.15e-26 | 107 |
| MS.gene049384.t1 | MTR_5g096310 | 29.020 | 255 | 170 | 2 | 13 | 260 | 123 | 373 | 2.34e-26 | 107 |
| MS.gene049384.t1 | MTR_3g072380 | 28.279 | 244 | 170 | 3 | 23 | 264 | 93 | 333 | 1.51e-22 | 95.9 |
| MS.gene049384.t1 | MTR_1g030320 | 27.344 | 256 | 175 | 5 | 23 | 272 | 92 | 342 | 4.46e-22 | 94.4 |
| MS.gene049384.t1 | MTR_0011s0320 | 25.843 | 267 | 179 | 8 | 12 | 270 | 83 | 338 | 5.76e-15 | 74.3 |
| MS.gene049384.t1 | MTR_3g107470 | 27.734 | 256 | 157 | 7 | 13 | 256 | 88 | 327 | 2.63e-14 | 72.4 |
| MS.gene049384.t1 | MTR_2g070400 | 26.437 | 261 | 174 | 8 | 13 | 264 | 82 | 333 | 2.79e-14 | 72.4 |
| MS.gene049384.t1 | MTR_4g114360 | 26.217 | 267 | 163 | 8 | 12 | 258 | 83 | 335 | 5.59e-14 | 71.6 |
| MS.gene049384.t1 | MTR_7g110380 | 25.287 | 261 | 174 | 8 | 29 | 284 | 101 | 345 | 4.44e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049384.t1 | AT2G30460 | 77.509 | 289 | 64 | 1 | 1 | 288 | 41 | 329 | 1.43e-165 | 462 |
| MS.gene049384.t1 | AT2G30460 | 77.509 | 289 | 64 | 1 | 1 | 288 | 41 | 329 | 1.43e-165 | 462 |
| MS.gene049384.t1 | AT2G30460 | 77.509 | 289 | 64 | 1 | 1 | 288 | 41 | 329 | 1.43e-165 | 462 |
| MS.gene049384.t1 | AT2G30460 | 77.509 | 289 | 64 | 1 | 1 | 288 | 62 | 350 | 8.26e-165 | 461 |
| MS.gene049384.t1 | AT2G30460 | 77.509 | 289 | 64 | 1 | 1 | 288 | 62 | 350 | 8.26e-165 | 461 |
| MS.gene049384.t1 | AT1G06890 | 75.768 | 293 | 66 | 1 | 1 | 288 | 62 | 354 | 9.27e-164 | 459 |
| MS.gene049384.t1 | AT1G06890 | 75.768 | 293 | 66 | 1 | 1 | 288 | 62 | 354 | 9.27e-164 | 459 |
| MS.gene049384.t1 | AT1G06890 | 77.978 | 277 | 61 | 0 | 1 | 277 | 62 | 338 | 7.35e-160 | 449 |
| MS.gene049384.t1 | AT1G06890 | 77.978 | 277 | 61 | 0 | 1 | 277 | 62 | 338 | 7.49e-160 | 449 |
| MS.gene049384.t1 | AT2G28315 | 63.958 | 283 | 99 | 2 | 1 | 282 | 62 | 342 | 5.27e-126 | 363 |
| MS.gene049384.t1 | AT2G28315 | 72.016 | 243 | 68 | 0 | 1 | 243 | 62 | 304 | 3.94e-124 | 357 |
| MS.gene049384.t1 | AT2G30460 | 82.822 | 163 | 28 | 0 | 1 | 163 | 62 | 224 | 4.74e-92 | 276 |
| MS.gene049384.t1 | AT4G09810 | 38.340 | 253 | 143 | 2 | 17 | 256 | 24 | 276 | 6.48e-53 | 174 |
| MS.gene049384.t1 | AT1G21070 | 39.912 | 228 | 137 | 0 | 17 | 244 | 84 | 311 | 1.44e-52 | 175 |
| MS.gene049384.t1 | AT4G09810 | 41.485 | 229 | 131 | 2 | 5 | 232 | 71 | 297 | 1.99e-52 | 174 |
| MS.gene049384.t1 | AT5G42420 | 35.019 | 257 | 166 | 1 | 14 | 270 | 81 | 336 | 2.30e-52 | 175 |
| MS.gene049384.t1 | AT1G76670 | 39.256 | 242 | 147 | 0 | 17 | 258 | 83 | 324 | 3.08e-51 | 172 |
| MS.gene049384.t1 | AT1G76670 | 39.256 | 242 | 147 | 0 | 17 | 258 | 83 | 324 | 3.08e-51 | 172 |
| MS.gene049384.t1 | AT1G34020 | 39.301 | 229 | 136 | 2 | 5 | 232 | 71 | 297 | 7.93e-49 | 165 |
| MS.gene049384.t1 | AT1G34020 | 39.301 | 229 | 136 | 2 | 5 | 232 | 71 | 297 | 7.93e-49 | 165 |
| MS.gene049384.t1 | AT1G34020 | 39.301 | 229 | 136 | 2 | 5 | 232 | 71 | 297 | 7.93e-49 | 165 |
| MS.gene049384.t1 | AT4G39390 | 39.171 | 217 | 131 | 1 | 17 | 232 | 86 | 302 | 7.65e-48 | 162 |
| MS.gene049384.t1 | AT4G39390 | 39.171 | 217 | 131 | 1 | 17 | 232 | 86 | 302 | 7.65e-48 | 162 |
| MS.gene049384.t1 | AT4G39390 | 39.171 | 217 | 131 | 1 | 17 | 232 | 82 | 298 | 7.71e-48 | 162 |
| MS.gene049384.t1 | AT4G09810 | 40.645 | 155 | 90 | 1 | 5 | 159 | 71 | 223 | 1.84e-31 | 117 |
| MS.gene049384.t1 | AT5G55950 | 32.258 | 217 | 143 | 1 | 18 | 234 | 51 | 263 | 2.25e-31 | 119 |
| MS.gene049384.t1 | AT5G55950 | 32.258 | 217 | 143 | 1 | 18 | 234 | 129 | 341 | 2.72e-31 | 120 |
| MS.gene049384.t1 | AT5G55950 | 33.014 | 209 | 136 | 1 | 26 | 234 | 77 | 281 | 4.53e-31 | 119 |
| MS.gene049384.t1 | AT5G57100 | 32.273 | 220 | 145 | 1 | 18 | 237 | 136 | 351 | 2.03e-30 | 118 |
| MS.gene049384.t1 | AT5G42420 | 33.333 | 162 | 107 | 1 | 109 | 270 | 109 | 269 | 2.04e-28 | 110 |
| MS.gene049384.t1 | AT5G57100 | 30.348 | 201 | 136 | 1 | 37 | 237 | 40 | 236 | 4.56e-24 | 99.0 |
| MS.gene049384.t1 | AT5G55950 | 31.737 | 167 | 110 | 1 | 18 | 184 | 129 | 291 | 6.98e-21 | 90.9 |
| MS.gene049384.t1 | AT5G57100 | 31.737 | 167 | 110 | 1 | 18 | 184 | 136 | 298 | 1.19e-20 | 90.1 |
| MS.gene049384.t1 | AT1G77610 | 27.309 | 249 | 173 | 3 | 23 | 267 | 87 | 331 | 1.57e-19 | 87.4 |
| MS.gene049384.t1 | AT1G21870 | 26.829 | 246 | 172 | 4 | 23 | 264 | 93 | 334 | 2.50e-18 | 84.0 |
| MS.gene049384.t1 | AT5G57100 | 39.394 | 99 | 60 | 0 | 18 | 116 | 136 | 234 | 2.80e-16 | 77.4 |
| MS.gene049384.t1 | AT2G25520 | 27.881 | 269 | 158 | 9 | 12 | 259 | 87 | 340 | 2.10e-14 | 72.8 |
| MS.gene049384.t1 | AT5G25400 | 25.758 | 264 | 183 | 6 | 12 | 271 | 87 | 341 | 7.18e-14 | 71.2 |
| MS.gene049384.t1 | AT5G11230 | 25.573 | 262 | 176 | 6 | 12 | 260 | 87 | 342 | 2.97e-13 | 69.7 |
| MS.gene049384.t1 | AT4G32390 | 26.136 | 264 | 182 | 8 | 12 | 271 | 87 | 341 | 8.79e-13 | 68.2 |
Find 65 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAGTACATTTCTTGTTAT+TGG | 0.113958 | 3.1:-75382270 | MS.gene049384:CDS |
| ATCTGATCCTTTCATTAGTA+TGG | 0.192587 | 3.1:-75381913 | MS.gene049384:CDS |
| TTAACCGACCAAAATGTATT+TGG | 0.205055 | 3.1:-75382452 | MS.gene049384:CDS |
| TGAATTTCTTCCCGAGAAAA+AGG | 0.209450 | 3.1:+75383538 | None:intergenic |
| CAGAAAGCCGTAGTTGGATT+TGG | 0.240775 | 3.1:-75383762 | MS.gene049384:CDS |
| GGGATCTTTCTTATCTCTTC+TGG | 0.246449 | 3.1:-75383091 | MS.gene049384:CDS |
| ACTTGAAACCAAATACATTT+TGG | 0.258828 | 3.1:+75382444 | None:intergenic |
| AAGAAACCTTGTACTTCTTC+TGG | 0.267156 | 3.1:+75382552 | None:intergenic |
| CCAGTCACTTATCAGGTTCT+TGG | 0.270456 | 3.1:-75382237 | MS.gene049384:CDS |
| AACAGGGTTGCTGCTTGATA+TGG | 0.291943 | 3.1:+75382503 | None:intergenic |
| GTTAATCTCTGGTCCATATC+TGG | 0.296236 | 3.1:-75382483 | MS.gene049384:CDS |
| CCTTTCATTAGTATGGAAAA+AGG | 0.297104 | 3.1:-75381906 | MS.gene049384:CDS |
| GATATGGACCAGAGATTAAC+AGG | 0.298493 | 3.1:+75382486 | None:intergenic |
| ACATGCCTTGTATTGGCATT+TGG | 0.350342 | 3.1:-75382204 | MS.gene049384:CDS |
| TTCTCCAGCTGAATGGGTCT+TGG | 0.351507 | 3.1:+75382169 | None:intergenic |
| AGAAAGCCGTAGTTGGATTT+GGG | 0.351984 | 3.1:-75383761 | MS.gene049384:CDS |
| CCAATACAAGGCATGTCTTC+AGG | 0.361826 | 3.1:+75382211 | None:intergenic |
| GACATCTCCAGTCACTTATC+AGG | 0.377983 | 3.1:-75382244 | MS.gene049384:CDS |
| GTTAAAAGTTTATCCAGATA+TGG | 0.383577 | 3.1:+75382470 | None:intergenic |
| ATTCAGCTGGAGAAACATAA+TGG | 0.385481 | 3.1:-75382160 | MS.gene049384:CDS |
| CACCCATGAGGAGGATAGAT+AGG | 0.391612 | 3.1:+75383154 | None:intergenic |
| TTATGTTTCTCCAGCTGAAT+GGG | 0.399962 | 3.1:+75382163 | None:intergenic |
| TCTTTGTCTTTGTTCCAGAC+AGG | 0.403719 | 3.1:+75381846 | None:intergenic |
| AGATTTGCAGTTGAATGCTC+TGG | 0.404522 | 3.1:-75383112 | MS.gene049384:CDS |
| TTCCCTATCTATCCTCCTCA+TGG | 0.422013 | 3.1:-75383157 | MS.gene049384:CDS |
| ATTATGTTTCTCCAGCTGAA+TGG | 0.435593 | 3.1:+75382162 | None:intergenic |
| AGCCTAGGGTTCAATTCTGT+CGG | 0.444368 | 3.1:-75383702 | MS.gene049384:CDS |
| AGCTGTTGAAGCCGCGGCAC+AGG | 0.450223 | 3.1:-75382070 | MS.gene049384:CDS |
| GACATGATTGATATAGAAGC+TGG | 0.450805 | 3.1:+75382525 | None:intergenic |
| CTTTGTCTTTGTTCCAGACA+GGG | 0.460471 | 3.1:+75381847 | None:intergenic |
| CCTGAAGACATGCCTTGTAT+TGG | 0.463142 | 3.1:-75382211 | MS.gene049384:CDS |
| TTTGAGCAGAAAGCCGTAGT+TGG | 0.477606 | 3.1:-75383768 | MS.gene049384:CDS |
| TGGGACATAAGTCCCCTGTC+TGG | 0.481095 | 3.1:-75381860 | MS.gene049384:CDS |
| TCTATCCTCCTCATGGGTGT+TGG | 0.481095 | 3.1:-75383150 | MS.gene049384:CDS |
| TTCAGCTGGAGAAACATAAT+GGG | 0.488898 | 3.1:-75382159 | MS.gene049384:CDS |
| AGCCGCGGCACAGGCATCCC+AGG | 0.490553 | 3.1:-75382061 | MS.gene049384:intron |
| TGCTCCAAGACCCATTCAGC+TGG | 0.496804 | 3.1:-75382173 | MS.gene049384:CDS |
| CATTCCATGTACTGTACTGT+TGG | 0.507133 | 3.1:-75383565 | MS.gene049384:CDS |
| TCCCTATCTATCCTCCTCAT+GGG | 0.517975 | 3.1:-75383156 | MS.gene049384:CDS |
| GCAGCAACCCTGTTAATCTC+TGG | 0.529946 | 3.1:-75382494 | MS.gene049384:CDS |
| TAAAATCCCAAATCCAACTA+CGG | 0.535809 | 3.1:+75383755 | None:intergenic |
| GACAGAAATTGAGATGAGGC+AGG | 0.537485 | 3.1:+75382296 | None:intergenic |
| GATTTGCAGTTGAATGCTCT+GGG | 0.539099 | 3.1:-75383111 | MS.gene049384:CDS |
| TTTGTCTTTGTTCCAGACAG+GGG | 0.559552 | 3.1:+75381848 | None:intergenic |
| ACAGGGGACTTATGTCCCAC+AGG | 0.562073 | 3.1:+75381864 | None:intergenic |
| AATGAGATTCTTCGAGCACA+AGG | 0.570074 | 3.1:-75383793 | MS.gene049384:CDS |
| CCAAGAACCTGATAAGTGAC+TGG | 0.571372 | 3.1:+75382237 | None:intergenic |
| CACTATCCAGAAGAAGTACA+AGG | 0.572849 | 3.1:-75382558 | MS.gene049384:CDS |
| TATAACCAAATGCCAATACA+AGG | 0.574384 | 3.1:+75382199 | None:intergenic |
| GTCTCCAACAGTACAGTACA+TGG | 0.575499 | 3.1:+75383561 | None:intergenic |
| AAATCTTTCCAGGCAAGAGA+AGG | 0.583785 | 3.1:-75381939 | MS.gene049384:intron |
| ACCCATGAGGAGGATAGATA+GGG | 0.590497 | 3.1:+75383155 | None:intergenic |
| ATCTTTCTTATCTCTTCTGG+CGG | 0.601235 | 3.1:-75383088 | MS.gene049384:CDS |
| CAAGTACACAACACAAGTGA+CGG | 0.616273 | 3.1:-75382426 | MS.gene049384:intron |
| AGCCGACAGAATTGAACCCT+AGG | 0.639934 | 3.1:+75383700 | None:intergenic |
| CGATGCTGTGATTGACCCTG+TGG | 0.642015 | 3.1:-75381880 | MS.gene049384:CDS |
| CAATTCCAACACCCATGAGG+AGG | 0.643900 | 3.1:+75383145 | None:intergenic |
| ACATGATTGATATAGAAGCT+GGG | 0.643948 | 3.1:+75382526 | None:intergenic |
| AACCTGGGATGCCTGTGCCG+CGG | 0.646370 | 3.1:+75382059 | None:intergenic |
| ATATAGAATCATCCCAACCA+TGG | 0.647960 | 3.1:+75382125 | None:intergenic |
| CAGGGGACTTATGTCCCACA+GGG | 0.661489 | 3.1:+75381865 | None:intergenic |
| AATTGACAGAAATTGAGATG+AGG | 0.667892 | 3.1:+75382292 | None:intergenic |
| TTGCAATTCCAACACCCATG+AGG | 0.723808 | 3.1:+75383142 | None:intergenic |
| ATATGGACCAGAGATTAACA+GGG | 0.762761 | 3.1:+75382487 | None:intergenic |
| GATGCTGTGATTGACCCTGT+GGG | 0.771297 | 3.1:-75381879 | MS.gene049384:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATACTTAAATATCTTAA+CGG | - | chr3.1:75382170-75382189 | MS.gene049384:CDS | 10.0% |
| !! | ATTAATGGAAAAACTATTAA+AGG | + | chr3.1:75382394-75382413 | None:intergenic | 15.0% |
| !! | TACTTAAATAAACATCTTAA+CGG | - | chr3.1:75382203-75382222 | MS.gene049384:CDS | 15.0% |
| !! | TGTTTACAAATTAACATTAA+TGG | + | chr3.1:75382409-75382428 | None:intergenic | 15.0% |
| !! | ACTAAAACAAAAAACATACT+TGG | + | chr3.1:75381964-75381983 | None:intergenic | 20.0% |
| !! | ATAAAAATCATAGTATGGAA+AGG | + | chr3.1:75382137-75382156 | None:intergenic | 20.0% |
| !! | CAAAAATTATCTCATAGTAT+TGG | + | chr3.1:75382633-75382652 | None:intergenic | 20.0% |
| !! | CTTGAAATGTTTACAAAAAA+TGG | - | chr3.1:75382973-75382992 | MS.gene049384:intron | 20.0% |
| !!! | GGTGAAACTAATTATTTTTA+AGG | + | chr3.1:75382602-75382621 | None:intergenic | 20.0% |
| !!! | TAAACATTTCAAGTACAATA+AGG | + | chr3.1:75382966-75382985 | None:intergenic | 20.0% |
| !!! | TTTAGTACATTTCTTGTTAT+TGG | - | chr3.1:75383364-75383383 | MS.gene049384:intron | 20.0% |
| ! | AAAAACTAAAAGAAAGTCTG+TGG | + | chr3.1:75383270-75383289 | None:intergenic | 25.0% |
| ! | ATATAGTCTGCTAACTATAT+AGG | - | chr3.1:75382747-75382766 | MS.gene049384:intron | 25.0% |
| ! | ATCATCAAAAAACATCTTAC+TGG | + | chr3.1:75382729-75382748 | None:intergenic | 25.0% |
| ! | CAGACATAAAAATCATAGTA+TGG | + | chr3.1:75382142-75382161 | None:intergenic | 25.0% |
| ! | GGAATAGAACTATATATTAC+AGG | - | chr3.1:75382661-75382680 | MS.gene049384:intron | 25.0% |
| ! | GTTAAAAGTTTATCCAGATA+TGG | + | chr3.1:75383167-75383186 | None:intergenic | 25.0% |
| ! | TATAGTCTGCTAACTATATA+GGG | - | chr3.1:75382748-75382767 | MS.gene049384:intron | 25.0% |
| ! | TTGTGTTCAAATGACATAAA+TGG | + | chr3.1:75382926-75382945 | None:intergenic | 25.0% |
| !! | ACTTGAAACCAAATACATTT+TGG | + | chr3.1:75383193-75383212 | None:intergenic | 25.0% |
| !! | ATTTTAAACGGAATCTCAAT+TGG | - | chr3.1:75381896-75381915 | MS.gene049384:CDS | 25.0% |
| !! | GAGATAATTTTTGTGATAGA+TGG | - | chr3.1:75382640-75382659 | MS.gene049384:intron | 25.0% |
| !! | TATGTCATTTGAACACAATT+AGG | - | chr3.1:75382928-75382947 | MS.gene049384:intron | 25.0% |
| !!! | AAACATAATGGGTATTTTGT+TGG | - | chr3.1:75383486-75383505 | MS.gene049384:intron | 25.0% |
| !!! | TTGTTTTTTTTTTGCTTTGC+AGG | - | chr3.1:75383300-75383319 | MS.gene049384:intron | 25.0% |
| !!! | TTTTTTTATCACGTGTTGAT+TGG | - | chr3.1:75381989-75382008 | MS.gene049384:intron | 25.0% |
| AAGAAAGTCTGTGGAAAAAA+AGG | + | chr3.1:75383261-75383280 | None:intergenic | 30.0% | |
| AATTGACAGAAATTGAGATG+AGG | + | chr3.1:75383345-75383364 | None:intergenic | 30.0% | |
| ACATGATTGATATAGAAGCT+GGG | + | chr3.1:75383111-75383130 | None:intergenic | 30.0% | |
| ATCTGATCCTTTCATTAGTA+TGG | - | chr3.1:75383721-75383740 | MS.gene049384:CDS | 30.0% | |
| CCTTTCATTAGTATGGAAAA+AGG | - | chr3.1:75383728-75383747 | MS.gene049384:CDS | 30.0% | |
| CTTTGCATTATCATTTACCA+CGG | - | chr3.1:75383646-75383665 | MS.gene049384:intron | 30.0% | |
| GTAGTCTCTAGATAAAGAAA+TGG | + | chr3.1:75382904-75382923 | None:intergenic | 30.0% | |
| TAAAATCCCAAATCCAACTA+CGG | + | chr3.1:75381882-75381901 | None:intergenic | 30.0% | |
| TATAACCAAATGCCAATACA+AGG | + | chr3.1:75383438-75383457 | None:intergenic | 30.0% | |
| TTAACCGACCAAAATGTATT+TGG | - | chr3.1:75383182-75383201 | MS.gene049384:intron | 30.0% | |
| TTTGCATTATCATTTACCAC+GGG | - | chr3.1:75383647-75383666 | MS.gene049384:intron | 30.0% | |
| ! | CCTTTTTCCATACTAATGAA+AGG | + | chr3.1:75383731-75383750 | None:intergenic | 30.0% |
| ! | GACTTTTAAATTTGAGCCTA+GGG | - | chr3.1:75381918-75381937 | MS.gene049384:CDS | 30.0% |
| ! | GGTTGACTGATAATTTTTCA+TGG | - | chr3.1:75382994-75383013 | MS.gene049384:intron | 30.0% |
| ! | TATCAACCTACCTATTTTGT+CGG | - | chr3.1:75382253-75382272 | MS.gene049384:CDS | 30.0% |
| !! | CTCATAGTATTGGTACATAT+AGG | + | chr3.1:75382623-75382642 | None:intergenic | 30.0% |
| !! | GAAACCAAATACATTTTGGT+CGG | + | chr3.1:75383189-75383208 | None:intergenic | 30.0% |
| !! | GTTGGATTTGGGATTTTAAA+CGG | - | chr3.1:75381884-75381903 | MS.gene049384:CDS | 30.0% |
| !!! | CATTGTTTTGACCTGAATTA+TGG | - | chr3.1:75382318-75382337 | MS.gene049384:intron | 30.0% |
| AAGAAACCTTGTACTTCTTC+TGG | + | chr3.1:75383085-75383104 | None:intergenic | 35.0% | |
| ATATAGAATCATCCCAACCA+TGG | + | chr3.1:75383512-75383531 | None:intergenic | 35.0% | |
| ATATGGACCAGAGATTAACA+GGG | + | chr3.1:75383150-75383169 | None:intergenic | 35.0% | |
| ATCTTTCTTATCTCTTCTGG+CGG | - | chr3.1:75382546-75382565 | MS.gene049384:CDS | 35.0% | |
| ATTATGTTTCTCCAGCTGAA+TGG | + | chr3.1:75383475-75383494 | None:intergenic | 35.0% | |
| ATTCAGCTGGAGAAACATAA+TGG | - | chr3.1:75383474-75383493 | MS.gene049384:intron | 35.0% | |
| CATCATGAATTTGCCTTTCA+AGG | - | chr3.1:75382778-75382797 | MS.gene049384:intron | 35.0% | |
| GAATTTCTTCCCGAGAAAAA+GGG | + | chr3.1:75382098-75382117 | None:intergenic | 35.0% | |
| GACATGATTGATATAGAAGC+TGG | + | chr3.1:75383112-75383131 | None:intergenic | 35.0% | |
| TAAAAATGAGCATGAGTGGA+TGG | + | chr3.1:75382354-75382373 | None:intergenic | 35.0% | |
| TAGTGTTTGTCATCTGAAAG+CGG | + | chr3.1:75383061-75383080 | None:intergenic | 35.0% | |
| TGAATTTCTTCCCGAGAAAA+AGG | + | chr3.1:75382099-75382118 | None:intergenic | 35.0% | |
| TGTTTCCTCTAAATCTTTCC+AGG | - | chr3.1:75383685-75383704 | MS.gene049384:intron | 35.0% | |
| TTATGTTTCTCCAGCTGAAT+GGG | + | chr3.1:75383474-75383493 | None:intergenic | 35.0% | |
| TTCAGCTGGAGAAACATAAT+GGG | - | chr3.1:75383475-75383494 | MS.gene049384:intron | 35.0% | |
| ! | GGACTTTTAAATTTGAGCCT+AGG | - | chr3.1:75381917-75381936 | MS.gene049384:CDS | 35.0% |
| ! | TTTTTCTCGGGAAGAAATTC+AGG | - | chr3.1:75382098-75382117 | MS.gene049384:CDS | 35.0% |
| AAATCTTTCCAGGCAAGAGA+AGG | - | chr3.1:75383695-75383714 | MS.gene049384:CDS | 40.0% | |
| ACATCTTACTGGCGAAGAAA+TGG | + | chr3.1:75382718-75382737 | None:intergenic | 40.0% | |
| AGAAAGCCGTAGTTGGATTT+GGG | - | chr3.1:75381873-75381892 | MS.gene049384:CDS | 40.0% | |
| AGATTTGCAGTTGAATGCTC+TGG | - | chr3.1:75382522-75382541 | MS.gene049384:CDS | 40.0% | |
| CAAGTACACAACACAAGTGA+CGG | - | chr3.1:75383208-75383227 | MS.gene049384:intron | 40.0% | |
| CATCTGAAAGCGGCTAATTA+AGG | + | chr3.1:75383051-75383070 | None:intergenic | 40.0% | |
| CATTCCATGTACTGTACTGT+TGG | - | chr3.1:75382069-75382088 | MS.gene049384:CDS | 40.0% | |
| CTTTGTCTTTGTTCCAGACA+GGG | + | chr3.1:75383790-75383809 | None:intergenic | 40.0% | |
| GAAAAGCAAGCCGACAAAAT+AGG | + | chr3.1:75382266-75382285 | None:intergenic | 40.0% | |
| GAAATGGTGCACAAAGAAAC+AGG | + | chr3.1:75382702-75382721 | None:intergenic | 40.0% | |
| GATATGGACCAGAGATTAAC+AGG | + | chr3.1:75383151-75383170 | None:intergenic | 40.0% | |
| GATTTGCAGTTGAATGCTCT+GGG | - | chr3.1:75382523-75382542 | MS.gene049384:CDS | 40.0% | |
| GCGTTAAAAATGAGCATGAG+TGG | + | chr3.1:75382358-75382377 | None:intergenic | 40.0% | |
| GGGATCTTTCTTATCTCTTC+TGG | - | chr3.1:75382543-75382562 | MS.gene049384:CDS | 40.0% | |
| GTTAATCTCTGGTCCATATC+TGG | - | chr3.1:75383151-75383170 | MS.gene049384:CDS | 40.0% | |
| TATTAAAGGCAGCAACGCTT+AGG | + | chr3.1:75382380-75382399 | None:intergenic | 40.0% | |
| TCTTGCCTGGAAAGATTTAG+AGG | + | chr3.1:75383693-75383712 | None:intergenic | 40.0% | |
| TCTTTGTCTTTGTTCCAGAC+AGG | + | chr3.1:75383791-75383810 | None:intergenic | 40.0% | |
| TGCCTTTCAAGGTACATGAA+AGG | - | chr3.1:75382789-75382808 | MS.gene049384:intron | 40.0% | |
| TGCCTTTCATGTACCTTGAA+AGG | + | chr3.1:75382794-75382813 | None:intergenic | 40.0% | |
| TTAAAAAGAGGGGTAAGGGA+TGG | + | chr3.1:75382836-75382855 | None:intergenic | 40.0% | |
| TTTCAAGGTACATGAAAGGC+AGG | - | chr3.1:75382793-75382812 | MS.gene049384:intron | 40.0% | |
| TTTGTCTTTGTTCCAGACAG+GGG | + | chr3.1:75383789-75383808 | None:intergenic | 40.0% | |
| ! | AATGGGTATTTTGTTGGCCA+TGG | - | chr3.1:75383492-75383511 | MS.gene049384:intron | 40.0% |
| ! | ACATGCCTTGTATTGGCATT+TGG | - | chr3.1:75383430-75383449 | MS.gene049384:intron | 40.0% |
| ! | CACTATCCAGAAGAAGTACA+AGG | - | chr3.1:75383076-75383095 | MS.gene049384:CDS | 40.0% |
| ! | GCTAACGGATACCATAATTC+AGG | + | chr3.1:75382332-75382351 | None:intergenic | 40.0% |
| ! | GTATTTTGTTGGCCATGGTT+GGG | - | chr3.1:75383497-75383516 | MS.gene049384:intron | 40.0% |
| ! | TGATTGCAAGCTTTGTCATC+TGG | + | chr3.1:75382051-75382070 | None:intergenic | 40.0% |
| AAGGTACATGAAAGGCAGGA+AGG | - | chr3.1:75382797-75382816 | MS.gene049384:intron | 45.0% | |
| ACCCATGAGGAGGATAGATA+GGG | + | chr3.1:75382482-75382501 | None:intergenic | 45.0% | |
| AGCAAGCCGACAAAATAGGT+AGG | + | chr3.1:75382262-75382281 | None:intergenic | 45.0% | |
| AGCCTAGGGTTCAATTCTGT+CGG | - | chr3.1:75381932-75381951 | MS.gene049384:intron | 45.0% | |
| AGGTACATGAAAGGCAGGAA+GGG | - | chr3.1:75382798-75382817 | MS.gene049384:intron | 45.0% | |
| CAGAAAGCCGTAGTTGGATT+TGG | - | chr3.1:75381872-75381891 | MS.gene049384:CDS | 45.0% | |
| CAGGTCAAAACAATGAGCCA+GGG | + | chr3.1:75382313-75382332 | None:intergenic | 45.0% | |
| CAGTCGAGTAAAACCAACCT+GGG | + | chr3.1:75383593-75383612 | None:intergenic | 45.0% | |
| CCAAGAACCTGATAAGTGAC+TGG | + | chr3.1:75383400-75383419 | None:intergenic | 45.0% | |
| CCAATACAAGGCATGTCTTC+AGG | + | chr3.1:75383426-75383445 | None:intergenic | 45.0% | |
| CCAGTCACTTATCAGGTTCT+TGG | - | chr3.1:75383397-75383416 | MS.gene049384:intron | 45.0% | |
| CCTGAAGACATGCCTTGTAT+TGG | - | chr3.1:75383423-75383442 | MS.gene049384:intron | 45.0% | |
| CGGGTTAAAAAGAGGGGTAA+GGG | + | chr3.1:75382840-75382859 | None:intergenic | 45.0% | |
| GACAGAAATTGAGATGAGGC+AGG | + | chr3.1:75383341-75383360 | None:intergenic | 45.0% | |
| GACATCTCCAGTCACTTATC+AGG | - | chr3.1:75383390-75383409 | MS.gene049384:intron | 45.0% | |
| GTCTCCAACAGTACAGTACA+TGG | + | chr3.1:75382076-75382095 | None:intergenic | 45.0% | |
| TCAAAACAATGAGCCAGGGA+GGG | + | chr3.1:75382309-75382328 | None:intergenic | 45.0% | |
| TCAGGTCAAAACAATGAGCC+AGG | + | chr3.1:75382314-75382333 | None:intergenic | 45.0% | |
| TCAGTCGAGTAAAACCAACC+TGG | + | chr3.1:75383594-75383613 | None:intergenic | 45.0% | |
| TCCCTATCTATCCTCCTCAT+GGG | - | chr3.1:75382478-75382497 | MS.gene049384:CDS | 45.0% | |
| TCTCTTGTGCTCACTCTGAT+TGG | - | chr3.1:75382865-75382884 | MS.gene049384:intron | 45.0% | |
| TTCCCTATCTATCCTCCTCA+TGG | - | chr3.1:75382477-75382496 | MS.gene049384:CDS | 45.0% | |
| TTGCAATTCCAACACCCATG+AGG | + | chr3.1:75382495-75382514 | None:intergenic | 45.0% | |
| TTTGAGCAGAAAGCCGTAGT+TGG | - | chr3.1:75381866-75381885 | MS.gene049384:CDS | 45.0% | |
| ! | AACAGGGTTGCTGCTTGATA+TGG | + | chr3.1:75383134-75383153 | None:intergenic | 45.0% |
| ! | AGAGCTTGCGGGTTAAAAAG+AGG | + | chr3.1:75382848-75382867 | None:intergenic | 45.0% |
| ! | AGCTTGCGGGTTAAAAAGAG+GGG | + | chr3.1:75382846-75382865 | None:intergenic | 45.0% |
| ! | CTGTTGGAGACCCTTTTTCT+CGG | - | chr3.1:75382085-75382104 | MS.gene049384:CDS | 45.0% |
| ! | GAGCTTGCGGGTTAAAAAGA+GGG | + | chr3.1:75382847-75382866 | None:intergenic | 45.0% |
| ! | GGTATTTTGTTGGCCATGGT+TGG | - | chr3.1:75383496-75383515 | MS.gene049384:intron | 45.0% |
| ! | TGTTGGAGACCCTTTTTCTC+GGG | - | chr3.1:75382086-75382105 | MS.gene049384:CDS | 45.0% |
| AGCCGACAGAATTGAACCCT+AGG | + | chr3.1:75381937-75381956 | None:intergenic | 50.0% | |
| AGTGAGCACAAGAGAGCTTG+CGG | + | chr3.1:75382860-75382879 | None:intergenic | 50.0% | |
| AGTGTCACAGAATGTTCCCG+TGG | + | chr3.1:75383666-75383685 | None:intergenic | 50.0% | |
| CAATTCCAACACCCATGAGG+AGG | + | chr3.1:75382492-75382511 | None:intergenic | 50.0% | |
| CACCCATGAGGAGGATAGAT+AGG | + | chr3.1:75382483-75382502 | None:intergenic | 50.0% | |
| GAGCATGAGTGGATGGCTAA+CGG | + | chr3.1:75382347-75382366 | None:intergenic | 50.0% | |
| GATGCTGTGATTGACCCTGT+GGG | - | chr3.1:75383755-75383774 | MS.gene049384:CDS | 50.0% | |
| GCAAAAAGCTGTTGAAGCCG+CGG | - | chr3.1:75383558-75383577 | MS.gene049384:CDS | 50.0% | |
| GCAGCAACCCTGTTAATCTC+TGG | - | chr3.1:75383140-75383159 | MS.gene049384:CDS | 50.0% | |
| GTCAAAACAATGAGCCAGGG+AGG | + | chr3.1:75382310-75382329 | None:intergenic | 50.0% | |
| TCTATCCTCCTCATGGGTGT+TGG | - | chr3.1:75382484-75382503 | MS.gene049384:CDS | 50.0% | |
| TTCTCCAGCTGAATGGGTCT+TGG | + | chr3.1:75383468-75383487 | None:intergenic | 50.0% | |
| ! | GCGGGTTAAAAAGAGGGGTA+AGG | + | chr3.1:75382841-75382860 | None:intergenic | 50.0% |
| !! | CTATTTTTCCATGCCCTCCC+TGG | - | chr3.1:75382293-75382312 | MS.gene049384:CDS | 50.0% |
| ACAGGGGACTTATGTCCCAC+AGG | + | chr3.1:75383773-75383792 | None:intergenic | 55.0% | |
| CAGATTCGCCTTCTCTTGCC+TGG | + | chr3.1:75383706-75383725 | None:intergenic | 55.0% | |
| CAGGGGACTTATGTCCCACA+GGG | + | chr3.1:75383772-75383791 | None:intergenic | 55.0% | |
| CGATGCTGTGATTGACCCTG+TGG | - | chr3.1:75383754-75383773 | MS.gene049384:CDS | 55.0% | |
| GGCAGGAAGGGTTAACATGC+AGG | - | chr3.1:75382810-75382829 | MS.gene049384:intron | 55.0% | |
| GTGAGCACAAGAGAGCTTGC+GGG | + | chr3.1:75382859-75382878 | None:intergenic | 55.0% | |
| TGCTCCAAGACCCATTCAGC+TGG | - | chr3.1:75383461-75383480 | MS.gene049384:intron | 55.0% | |
| TGGGACATAAGTCCCCTGTC+TGG | - | chr3.1:75383774-75383793 | MS.gene049384:CDS | 55.0% | |
| ACAATGAGCCAGGGAGGGCA+TGG | + | chr3.1:75382304-75382323 | None:intergenic | 60.0% | |
| AACCTGGGATGCCTGTGCCG+CGG | + | chr3.1:75383578-75383597 | None:intergenic | 65.0% | |
| AGCTGTTGAAGCCGCGGCAC+AGG | - | chr3.1:75383564-75383583 | MS.gene049384:CDS | 65.0% | |
| GCGGCACAGGCATCCCAGGT+TGG | - | chr3.1:75383577-75383596 | MS.gene049384:CDS | 70.0% | |
| AGCCGCGGCACAGGCATCCC+AGG | - | chr3.1:75383573-75383592 | MS.gene049384:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 75381842 | 75383814 | 75381842 | ID=MS.gene049384 |
| chr3.1 | mRNA | 75381842 | 75383814 | 75381842 | ID=MS.gene049384.t1;Parent=MS.gene049384 |
| chr3.1 | exon | 75383692 | 75383814 | 75383692 | ID=MS.gene049384.t1.exon1;Parent=MS.gene049384.t1 |
| chr3.1 | CDS | 75383692 | 75383814 | 75383692 | ID=cds.MS.gene049384.t1;Parent=MS.gene049384.t1 |
| chr3.1 | exon | 75383537 | 75383604 | 75383537 | ID=MS.gene049384.t1.exon2;Parent=MS.gene049384.t1 |
| chr3.1 | CDS | 75383537 | 75383604 | 75383537 | ID=cds.MS.gene049384.t1;Parent=MS.gene049384.t1 |
| chr3.1 | exon | 75383062 | 75383194 | 75383062 | ID=MS.gene049384.t1.exon3;Parent=MS.gene049384.t1 |
| chr3.1 | CDS | 75383062 | 75383194 | 75383062 | ID=cds.MS.gene049384.t1;Parent=MS.gene049384.t1 |
| chr3.1 | exon | 75382427 | 75382588 | 75382427 | ID=MS.gene049384.t1.exon4;Parent=MS.gene049384.t1 |
| chr3.1 | CDS | 75382427 | 75382588 | 75382427 | ID=cds.MS.gene049384.t1;Parent=MS.gene049384.t1 |
| chr3.1 | exon | 75382062 | 75382334 | 75382062 | ID=MS.gene049384.t1.exon5;Parent=MS.gene049384.t1 |
| chr3.1 | CDS | 75382062 | 75382334 | 75382062 | ID=cds.MS.gene049384.t1;Parent=MS.gene049384.t1 |
| chr3.1 | exon | 75381842 | 75381949 | 75381842 | ID=MS.gene049384.t1.exon6;Parent=MS.gene049384.t1 |
| chr3.1 | CDS | 75381842 | 75381949 | 75381842 | ID=cds.MS.gene049384.t1;Parent=MS.gene049384.t1 |
| Gene Sequence |
| Protein sequence |
