Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059337.t1 | XP_013461534.1 | 100 | 288 | 0 | 0 | 1 | 288 | 62 | 349 | 4.80E-153 | 550.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059337.t1 | Q8GUJ1 | 77.5 | 289 | 64 | 1 | 1 | 288 | 62 | 350 | 7.1e-121 | 434.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059337.t1 | A0A072V0L7 | 100.0 | 288 | 0 | 0 | 1 | 288 | 62 | 349 | 3.5e-153 | 550.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049384 | MS.gene059337 | 0.855632 | 5.54E-62 | -1.69E-46 |
| MS.gene059337 | MS.gene06508 | 0.87751 | 5.93E-69 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059337.t1 | MTR_3g094260 | 100.000 | 288 | 0 | 0 | 1 | 288 | 62 | 349 | 0.0 | 588 |
| MS.gene059337.t1 | MTR_3g094270 | 82.639 | 288 | 46 | 1 | 1 | 288 | 62 | 345 | 2.94e-177 | 493 |
| MS.gene059337.t1 | MTR_4g058860 | 62.976 | 289 | 102 | 3 | 1 | 286 | 60 | 346 | 1.54e-125 | 362 |
| MS.gene059337.t1 | MTR_2g094640 | 60.627 | 287 | 110 | 2 | 1 | 286 | 62 | 346 | 2.05e-124 | 359 |
| MS.gene059337.t1 | MTR_1g026590 | 40.260 | 231 | 138 | 0 | 14 | 244 | 78 | 308 | 1.35e-49 | 167 |
| MS.gene059337.t1 | MTR_8g092190 | 40.455 | 220 | 130 | 1 | 14 | 232 | 78 | 297 | 8.34e-49 | 165 |
| MS.gene059337.t1 | MTR_3g095130 | 36.364 | 231 | 146 | 1 | 3 | 232 | 18 | 248 | 2.26e-48 | 162 |
| MS.gene059337.t1 | MTR_3g095130 | 36.364 | 231 | 146 | 1 | 3 | 232 | 67 | 297 | 7.73e-48 | 162 |
| MS.gene059337.t1 | MTR_5g004620 | 36.475 | 244 | 153 | 1 | 17 | 260 | 84 | 325 | 2.82e-44 | 154 |
| MS.gene059337.t1 | MTR_1g098240 | 40.000 | 210 | 125 | 1 | 24 | 232 | 88 | 297 | 9.41e-43 | 149 |
| MS.gene059337.t1 | MTR_2g038410 | 29.958 | 237 | 162 | 1 | 7 | 243 | 116 | 348 | 1.15e-26 | 107 |
| MS.gene059337.t1 | MTR_5g096310 | 29.020 | 255 | 170 | 2 | 13 | 260 | 123 | 373 | 2.34e-26 | 107 |
| MS.gene059337.t1 | MTR_3g072380 | 28.279 | 244 | 170 | 3 | 23 | 264 | 93 | 333 | 1.51e-22 | 95.9 |
| MS.gene059337.t1 | MTR_1g030320 | 27.344 | 256 | 175 | 5 | 23 | 272 | 92 | 342 | 4.46e-22 | 94.4 |
| MS.gene059337.t1 | MTR_0011s0320 | 25.843 | 267 | 179 | 8 | 12 | 270 | 83 | 338 | 5.76e-15 | 74.3 |
| MS.gene059337.t1 | MTR_3g107470 | 27.734 | 256 | 157 | 7 | 13 | 256 | 88 | 327 | 2.63e-14 | 72.4 |
| MS.gene059337.t1 | MTR_2g070400 | 26.437 | 261 | 174 | 8 | 13 | 264 | 82 | 333 | 2.79e-14 | 72.4 |
| MS.gene059337.t1 | MTR_4g114360 | 26.217 | 267 | 163 | 8 | 12 | 258 | 83 | 335 | 5.59e-14 | 71.6 |
| MS.gene059337.t1 | MTR_7g110380 | 25.287 | 261 | 174 | 8 | 29 | 284 | 101 | 345 | 4.44e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059337.t1 | AT2G30460 | 77.509 | 289 | 64 | 1 | 1 | 288 | 41 | 329 | 1.43e-165 | 462 |
| MS.gene059337.t1 | AT2G30460 | 77.509 | 289 | 64 | 1 | 1 | 288 | 41 | 329 | 1.43e-165 | 462 |
| MS.gene059337.t1 | AT2G30460 | 77.509 | 289 | 64 | 1 | 1 | 288 | 41 | 329 | 1.43e-165 | 462 |
| MS.gene059337.t1 | AT2G30460 | 77.509 | 289 | 64 | 1 | 1 | 288 | 62 | 350 | 8.26e-165 | 461 |
| MS.gene059337.t1 | AT2G30460 | 77.509 | 289 | 64 | 1 | 1 | 288 | 62 | 350 | 8.26e-165 | 461 |
| MS.gene059337.t1 | AT1G06890 | 75.768 | 293 | 66 | 1 | 1 | 288 | 62 | 354 | 9.27e-164 | 459 |
| MS.gene059337.t1 | AT1G06890 | 75.768 | 293 | 66 | 1 | 1 | 288 | 62 | 354 | 9.27e-164 | 459 |
| MS.gene059337.t1 | AT1G06890 | 77.978 | 277 | 61 | 0 | 1 | 277 | 62 | 338 | 7.35e-160 | 449 |
| MS.gene059337.t1 | AT1G06890 | 77.978 | 277 | 61 | 0 | 1 | 277 | 62 | 338 | 7.49e-160 | 449 |
| MS.gene059337.t1 | AT2G28315 | 63.958 | 283 | 99 | 2 | 1 | 282 | 62 | 342 | 5.27e-126 | 363 |
| MS.gene059337.t1 | AT2G28315 | 72.016 | 243 | 68 | 0 | 1 | 243 | 62 | 304 | 3.94e-124 | 357 |
| MS.gene059337.t1 | AT2G30460 | 82.822 | 163 | 28 | 0 | 1 | 163 | 62 | 224 | 4.74e-92 | 276 |
| MS.gene059337.t1 | AT4G09810 | 38.340 | 253 | 143 | 2 | 17 | 256 | 24 | 276 | 6.48e-53 | 174 |
| MS.gene059337.t1 | AT1G21070 | 39.912 | 228 | 137 | 0 | 17 | 244 | 84 | 311 | 1.44e-52 | 175 |
| MS.gene059337.t1 | AT4G09810 | 41.485 | 229 | 131 | 2 | 5 | 232 | 71 | 297 | 1.99e-52 | 174 |
| MS.gene059337.t1 | AT5G42420 | 35.019 | 257 | 166 | 1 | 14 | 270 | 81 | 336 | 2.30e-52 | 175 |
| MS.gene059337.t1 | AT1G76670 | 39.256 | 242 | 147 | 0 | 17 | 258 | 83 | 324 | 3.08e-51 | 172 |
| MS.gene059337.t1 | AT1G76670 | 39.256 | 242 | 147 | 0 | 17 | 258 | 83 | 324 | 3.08e-51 | 172 |
| MS.gene059337.t1 | AT1G34020 | 39.301 | 229 | 136 | 2 | 5 | 232 | 71 | 297 | 7.93e-49 | 165 |
| MS.gene059337.t1 | AT1G34020 | 39.301 | 229 | 136 | 2 | 5 | 232 | 71 | 297 | 7.93e-49 | 165 |
| MS.gene059337.t1 | AT1G34020 | 39.301 | 229 | 136 | 2 | 5 | 232 | 71 | 297 | 7.93e-49 | 165 |
| MS.gene059337.t1 | AT4G39390 | 39.171 | 217 | 131 | 1 | 17 | 232 | 86 | 302 | 7.65e-48 | 162 |
| MS.gene059337.t1 | AT4G39390 | 39.171 | 217 | 131 | 1 | 17 | 232 | 86 | 302 | 7.65e-48 | 162 |
| MS.gene059337.t1 | AT4G39390 | 39.171 | 217 | 131 | 1 | 17 | 232 | 82 | 298 | 7.71e-48 | 162 |
| MS.gene059337.t1 | AT4G09810 | 40.645 | 155 | 90 | 1 | 5 | 159 | 71 | 223 | 1.84e-31 | 117 |
| MS.gene059337.t1 | AT5G55950 | 32.258 | 217 | 143 | 1 | 18 | 234 | 51 | 263 | 2.25e-31 | 119 |
| MS.gene059337.t1 | AT5G55950 | 32.258 | 217 | 143 | 1 | 18 | 234 | 129 | 341 | 2.72e-31 | 120 |
| MS.gene059337.t1 | AT5G55950 | 33.014 | 209 | 136 | 1 | 26 | 234 | 77 | 281 | 4.53e-31 | 119 |
| MS.gene059337.t1 | AT5G57100 | 32.273 | 220 | 145 | 1 | 18 | 237 | 136 | 351 | 2.03e-30 | 118 |
| MS.gene059337.t1 | AT5G42420 | 33.333 | 162 | 107 | 1 | 109 | 270 | 109 | 269 | 2.04e-28 | 110 |
| MS.gene059337.t1 | AT5G57100 | 30.348 | 201 | 136 | 1 | 37 | 237 | 40 | 236 | 4.56e-24 | 99.0 |
| MS.gene059337.t1 | AT5G55950 | 31.737 | 167 | 110 | 1 | 18 | 184 | 129 | 291 | 6.98e-21 | 90.9 |
| MS.gene059337.t1 | AT5G57100 | 31.737 | 167 | 110 | 1 | 18 | 184 | 136 | 298 | 1.19e-20 | 90.1 |
| MS.gene059337.t1 | AT1G77610 | 27.309 | 249 | 173 | 3 | 23 | 267 | 87 | 331 | 1.57e-19 | 87.4 |
| MS.gene059337.t1 | AT1G21870 | 26.829 | 246 | 172 | 4 | 23 | 264 | 93 | 334 | 2.50e-18 | 84.0 |
| MS.gene059337.t1 | AT5G57100 | 39.394 | 99 | 60 | 0 | 18 | 116 | 136 | 234 | 2.80e-16 | 77.4 |
| MS.gene059337.t1 | AT2G25520 | 27.881 | 269 | 158 | 9 | 12 | 259 | 87 | 340 | 2.10e-14 | 72.8 |
| MS.gene059337.t1 | AT5G25400 | 25.758 | 264 | 183 | 6 | 12 | 271 | 87 | 341 | 7.18e-14 | 71.2 |
| MS.gene059337.t1 | AT5G11230 | 25.573 | 262 | 176 | 6 | 12 | 260 | 87 | 342 | 2.97e-13 | 69.7 |
| MS.gene059337.t1 | AT4G32390 | 26.136 | 264 | 182 | 8 | 12 | 271 | 87 | 341 | 8.79e-13 | 68.2 |
Find 65 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAGTACATTTCTTGTTAT+TGG | 0.090811 | 3.4:-85885346 | MS.gene059337:CDS |
| ATCTGATCCTTTCATTAGTA+TGG | 0.192587 | 3.4:-85884989 | MS.gene059337:CDS |
| TTAACCGACCAAAATGTATT+TGG | 0.205055 | 3.4:-85885528 | MS.gene059337:CDS |
| TGAATTTCTTCCCGAGAAAA+AGG | 0.209450 | 3.4:+85886614 | None:intergenic |
| CAGAAAGCCGTAGTTGGATT+TGG | 0.240775 | 3.4:-85886838 | MS.gene059337:CDS |
| GGGATCTTTCTTATCTCTTC+TGG | 0.246449 | 3.4:-85886167 | MS.gene059337:CDS |
| ACTTGAAACCAAATACATTT+TGG | 0.258828 | 3.4:+85885520 | None:intergenic |
| AAGAAACCTTGTACTTCTTC+TGG | 0.267156 | 3.4:+85885628 | None:intergenic |
| CCAGTCACTTATCAGGTTCT+TGG | 0.270456 | 3.4:-85885313 | MS.gene059337:CDS |
| AACAGGGTTGCTGCTTGATA+TGG | 0.291943 | 3.4:+85885579 | None:intergenic |
| GTTAATCTCTGGTCCATATC+TGG | 0.296236 | 3.4:-85885559 | MS.gene059337:CDS |
| CCTTTCATTAGTATGGAAAA+AGG | 0.297104 | 3.4:-85884982 | MS.gene059337:CDS |
| GATATGGACCAGAGATTAAC+AGG | 0.298493 | 3.4:+85885562 | None:intergenic |
| ACATGCCTTGTATTGGCATT+TGG | 0.350342 | 3.4:-85885280 | MS.gene059337:CDS |
| TTCTCCAGCTGAATGGGTCT+TGG | 0.351507 | 3.4:+85885245 | None:intergenic |
| AGAAAGCCGTAGTTGGATTT+GGG | 0.351984 | 3.4:-85886837 | MS.gene059337:CDS |
| CCAATACAAGGCATGTCTTC+AGG | 0.361826 | 3.4:+85885287 | None:intergenic |
| GACATCTCCAGTCACTTATC+AGG | 0.378688 | 3.4:-85885320 | MS.gene059337:CDS |
| GTTAAAAGTTTATCCAGATA+TGG | 0.383577 | 3.4:+85885546 | None:intergenic |
| ATTCAGCTGGAGAAACATAA+TGG | 0.385481 | 3.4:-85885236 | MS.gene059337:CDS |
| CACCCATGAGGAGGATAGAT+AGG | 0.391612 | 3.4:+85886230 | None:intergenic |
| TTATGTTTCTCCAGCTGAAT+GGG | 0.399962 | 3.4:+85885239 | None:intergenic |
| TCTTTGTCTTTGTTCCAGAC+AGG | 0.403719 | 3.4:+85884922 | None:intergenic |
| AGATTTGCAGTTGAATGCTC+TGG | 0.404522 | 3.4:-85886188 | MS.gene059337:CDS |
| TTCCCTATCTATCCTCCTCA+TGG | 0.422013 | 3.4:-85886233 | MS.gene059337:CDS |
| ATTATGTTTCTCCAGCTGAA+TGG | 0.435593 | 3.4:+85885238 | None:intergenic |
| AGCCTAGGGTTCAATTCTGT+CGG | 0.444368 | 3.4:-85886778 | MS.gene059337:CDS |
| AGCTGTTGAAGCCGCGGCAC+AGG | 0.450223 | 3.4:-85885146 | MS.gene059337:CDS |
| GACATGATTGATATAGAAGC+TGG | 0.450805 | 3.4:+85885601 | None:intergenic |
| CTTTGTCTTTGTTCCAGACA+GGG | 0.460471 | 3.4:+85884923 | None:intergenic |
| CCTGAAGACATGCCTTGTAT+TGG | 0.463142 | 3.4:-85885287 | MS.gene059337:CDS |
| TTTGAGCAGAAAGCCGTAGT+TGG | 0.477606 | 3.4:-85886844 | MS.gene059337:CDS |
| TGGGACATAAGTCCCCTGTC+TGG | 0.481095 | 3.4:-85884936 | MS.gene059337:CDS |
| TCTATCCTCCTCATGGGTGT+TGG | 0.481095 | 3.4:-85886226 | MS.gene059337:CDS |
| TTCAGCTGGAGAAACATAAT+GGG | 0.488898 | 3.4:-85885235 | MS.gene059337:CDS |
| AGCCGCGGCACAGGCATCCC+AGG | 0.490553 | 3.4:-85885137 | MS.gene059337:intron |
| TGCTCCAAGACCCATTCAGC+TGG | 0.496804 | 3.4:-85885249 | MS.gene059337:CDS |
| CATTCCATGTACTGTACTGT+TGG | 0.507133 | 3.4:-85886641 | MS.gene059337:CDS |
| TCCCTATCTATCCTCCTCAT+GGG | 0.517975 | 3.4:-85886232 | MS.gene059337:CDS |
| GCAGCAACCCTGTTAATCTC+TGG | 0.529946 | 3.4:-85885570 | MS.gene059337:CDS |
| TAAAATCCCAAATCCAACTA+CGG | 0.535809 | 3.4:+85886831 | None:intergenic |
| GACAGAAATTGAGATGAGGC+AGG | 0.537485 | 3.4:+85885372 | None:intergenic |
| GATTTGCAGTTGAATGCTCT+GGG | 0.539099 | 3.4:-85886187 | MS.gene059337:CDS |
| TTTGTCTTTGTTCCAGACAG+GGG | 0.559552 | 3.4:+85884924 | None:intergenic |
| ACAGGGGACTTATGTCCCAC+AGG | 0.562073 | 3.4:+85884940 | None:intergenic |
| AATGAGATTCTTCGAGCACA+AGG | 0.570074 | 3.4:-85886869 | MS.gene059337:CDS |
| CCAAGAACCTGATAAGTGAC+TGG | 0.571372 | 3.4:+85885313 | None:intergenic |
| CACTATCCAGAAGAAGTACA+AGG | 0.572849 | 3.4:-85885634 | MS.gene059337:CDS |
| TATAACCAAATGCCAATACA+AGG | 0.574384 | 3.4:+85885275 | None:intergenic |
| GTCTCCAACAGTACAGTACA+TGG | 0.575499 | 3.4:+85886637 | None:intergenic |
| AAATCTTTCCAGGCAAGAGA+AGG | 0.583785 | 3.4:-85885015 | MS.gene059337:intron |
| ACCCATGAGGAGGATAGATA+GGG | 0.590497 | 3.4:+85886231 | None:intergenic |
| ATCTTTCTTATCTCTTCTGG+CGG | 0.601235 | 3.4:-85886164 | MS.gene059337:CDS |
| CAAGTACACAACACAAGTGA+CGG | 0.616273 | 3.4:-85885502 | MS.gene059337:intron |
| AGCCGACAGAATTGAACCCT+AGG | 0.639934 | 3.4:+85886776 | None:intergenic |
| CGATGCTGTGATTGACCCTG+TGG | 0.642015 | 3.4:-85884956 | MS.gene059337:CDS |
| CAATTCCAACACCCATGAGG+AGG | 0.643900 | 3.4:+85886221 | None:intergenic |
| ACATGATTGATATAGAAGCT+GGG | 0.643948 | 3.4:+85885602 | None:intergenic |
| AACCTGGGATGCCTGTGCCG+CGG | 0.646370 | 3.4:+85885135 | None:intergenic |
| ATATAGAATCATCCCAACCA+TGG | 0.647960 | 3.4:+85885201 | None:intergenic |
| CAGGGGACTTATGTCCCACA+GGG | 0.661489 | 3.4:+85884941 | None:intergenic |
| AATTGACAGAAATTGAGATG+AGG | 0.667892 | 3.4:+85885368 | None:intergenic |
| TTGCAATTCCAACACCCATG+AGG | 0.723808 | 3.4:+85886218 | None:intergenic |
| ATATGGACCAGAGATTAACA+GGG | 0.762761 | 3.4:+85885563 | None:intergenic |
| GATGCTGTGATTGACCCTGT+GGG | 0.771297 | 3.4:-85884955 | MS.gene059337:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATACTTAAATATCTTAA+CGG | - | chr3.4:85885246-85885265 | MS.gene059337:CDS | 10.0% |
| !! | ATTAATGGAAAAACTATTAA+AGG | + | chr3.4:85885470-85885489 | None:intergenic | 15.0% |
| !! | TACTTAAATAAACATCTTAA+CGG | - | chr3.4:85885279-85885298 | MS.gene059337:CDS | 15.0% |
| !! | TGTTTACAAATTAACATTAA+TGG | + | chr3.4:85885485-85885504 | None:intergenic | 15.0% |
| !! | ACTAAAACAAAAAACATACT+TGG | + | chr3.4:85885040-85885059 | None:intergenic | 20.0% |
| !! | ATAAAAATCATAGTATGGAA+AGG | + | chr3.4:85885213-85885232 | None:intergenic | 20.0% |
| !! | CAAAAATTATCTCATAGTAT+TGG | + | chr3.4:85885709-85885728 | None:intergenic | 20.0% |
| !! | CTTGAAATGTTTACAAAAAA+TGG | - | chr3.4:85886049-85886068 | MS.gene059337:intron | 20.0% |
| !!! | GGTGAAACTAATTATTTTTA+AGG | + | chr3.4:85885678-85885697 | None:intergenic | 20.0% |
| !!! | TAAACATTTCAAGTACAATA+AGG | + | chr3.4:85886042-85886061 | None:intergenic | 20.0% |
| !!! | TTTAGTACATTTCTTGTTAT+TGG | - | chr3.4:85886440-85886459 | MS.gene059337:intron | 20.0% |
| ! | AAAAACTAAAAGAAAGTCTG+TGG | + | chr3.4:85886346-85886365 | None:intergenic | 25.0% |
| ! | ATATAGTCTGCTAACTATAT+AGG | - | chr3.4:85885823-85885842 | MS.gene059337:intron | 25.0% |
| ! | ATCATCAAAAAACATCTTAC+TGG | + | chr3.4:85885805-85885824 | None:intergenic | 25.0% |
| ! | CAGACATAAAAATCATAGTA+TGG | + | chr3.4:85885218-85885237 | None:intergenic | 25.0% |
| ! | GGAATAGAACTATATATTAC+AGG | - | chr3.4:85885737-85885756 | MS.gene059337:intron | 25.0% |
| ! | GTTAAAAGTTTATCCAGATA+TGG | + | chr3.4:85886243-85886262 | None:intergenic | 25.0% |
| ! | TATAGTCTGCTAACTATATA+GGG | - | chr3.4:85885824-85885843 | MS.gene059337:intron | 25.0% |
| ! | TTGTGTTCAAATGACATAAA+TGG | + | chr3.4:85886002-85886021 | None:intergenic | 25.0% |
| !! | ACTTGAAACCAAATACATTT+TGG | + | chr3.4:85886269-85886288 | None:intergenic | 25.0% |
| !! | ATTTTAAACGGAATCTCAAT+TGG | - | chr3.4:85884972-85884991 | MS.gene059337:CDS | 25.0% |
| !! | GAGATAATTTTTGTGATAGA+TGG | - | chr3.4:85885716-85885735 | MS.gene059337:intron | 25.0% |
| !! | TATGTCATTTGAACACAATT+AGG | - | chr3.4:85886004-85886023 | MS.gene059337:intron | 25.0% |
| !!! | AAACATAATGGGTATTTTGT+TGG | - | chr3.4:85886562-85886581 | MS.gene059337:intron | 25.0% |
| !!! | TTGTTTTTTTTTTGCTTTGC+AGG | - | chr3.4:85886376-85886395 | MS.gene059337:intron | 25.0% |
| !!! | TTTTTTTATCACGTGTTGAT+TGG | - | chr3.4:85885065-85885084 | MS.gene059337:intron | 25.0% |
| AAGAAAGTCTGTGGAAAAAA+AGG | + | chr3.4:85886337-85886356 | None:intergenic | 30.0% | |
| AATTGACAGAAATTGAGATG+AGG | + | chr3.4:85886421-85886440 | None:intergenic | 30.0% | |
| ACATGATTGATATAGAAGCT+GGG | + | chr3.4:85886187-85886206 | None:intergenic | 30.0% | |
| ATCTGATCCTTTCATTAGTA+TGG | - | chr3.4:85886797-85886816 | MS.gene059337:CDS | 30.0% | |
| CCTTTCATTAGTATGGAAAA+AGG | - | chr3.4:85886804-85886823 | MS.gene059337:CDS | 30.0% | |
| CTTTGCATTATCATTTACCA+CGG | - | chr3.4:85886722-85886741 | MS.gene059337:intron | 30.0% | |
| GTAGTCTCTAGATAAAGAAA+TGG | + | chr3.4:85885980-85885999 | None:intergenic | 30.0% | |
| TAAAATCCCAAATCCAACTA+CGG | + | chr3.4:85884958-85884977 | None:intergenic | 30.0% | |
| TATAACCAAATGCCAATACA+AGG | + | chr3.4:85886514-85886533 | None:intergenic | 30.0% | |
| TTAACCGACCAAAATGTATT+TGG | - | chr3.4:85886258-85886277 | MS.gene059337:intron | 30.0% | |
| TTTGCATTATCATTTACCAC+GGG | - | chr3.4:85886723-85886742 | MS.gene059337:intron | 30.0% | |
| ! | CCTTTTTCCATACTAATGAA+AGG | + | chr3.4:85886807-85886826 | None:intergenic | 30.0% |
| ! | GACTTTTAAATTTGAGCCTA+GGG | - | chr3.4:85884994-85885013 | MS.gene059337:CDS | 30.0% |
| ! | GGTTGACTGATAATTTTTCA+TGG | - | chr3.4:85886070-85886089 | MS.gene059337:intron | 30.0% |
| ! | TATCAACCTACCTATTTTGT+CGG | - | chr3.4:85885329-85885348 | MS.gene059337:CDS | 30.0% |
| !! | CTCATAGTATTGGTACATAT+AGG | + | chr3.4:85885699-85885718 | None:intergenic | 30.0% |
| !! | GAAACCAAATACATTTTGGT+CGG | + | chr3.4:85886265-85886284 | None:intergenic | 30.0% |
| !! | GTTGGATTTGGGATTTTAAA+CGG | - | chr3.4:85884960-85884979 | MS.gene059337:CDS | 30.0% |
| !!! | CATTGTTTTGACCTGAATTA+TGG | - | chr3.4:85885394-85885413 | MS.gene059337:intron | 30.0% |
| AAGAAACCTTGTACTTCTTC+TGG | + | chr3.4:85886161-85886180 | None:intergenic | 35.0% | |
| ATATAGAATCATCCCAACCA+TGG | + | chr3.4:85886588-85886607 | None:intergenic | 35.0% | |
| ATATGGACCAGAGATTAACA+GGG | + | chr3.4:85886226-85886245 | None:intergenic | 35.0% | |
| ATCTTTCTTATCTCTTCTGG+CGG | - | chr3.4:85885622-85885641 | MS.gene059337:CDS | 35.0% | |
| ATTATGTTTCTCCAGCTGAA+TGG | + | chr3.4:85886551-85886570 | None:intergenic | 35.0% | |
| ATTCAGCTGGAGAAACATAA+TGG | - | chr3.4:85886550-85886569 | MS.gene059337:intron | 35.0% | |
| CATCATGAATTTGCCTTTCA+AGG | - | chr3.4:85885854-85885873 | MS.gene059337:intron | 35.0% | |
| GAATTTCTTCCCGAGAAAAA+GGG | + | chr3.4:85885174-85885193 | None:intergenic | 35.0% | |
| GACATGATTGATATAGAAGC+TGG | + | chr3.4:85886188-85886207 | None:intergenic | 35.0% | |
| TAAAAATGAGCATGAGTGGA+TGG | + | chr3.4:85885430-85885449 | None:intergenic | 35.0% | |
| TAGTGTTTGTCATCTGAAAG+CGG | + | chr3.4:85886137-85886156 | None:intergenic | 35.0% | |
| TGAATTTCTTCCCGAGAAAA+AGG | + | chr3.4:85885175-85885194 | None:intergenic | 35.0% | |
| TGTTTCCTCTAAATCTTTCC+AGG | - | chr3.4:85886761-85886780 | MS.gene059337:intron | 35.0% | |
| TTATGTTTCTCCAGCTGAAT+GGG | + | chr3.4:85886550-85886569 | None:intergenic | 35.0% | |
| TTCAGCTGGAGAAACATAAT+GGG | - | chr3.4:85886551-85886570 | MS.gene059337:intron | 35.0% | |
| ! | GGACTTTTAAATTTGAGCCT+AGG | - | chr3.4:85884993-85885012 | MS.gene059337:CDS | 35.0% |
| ! | TTTTTCTCGGGAAGAAATTC+AGG | - | chr3.4:85885174-85885193 | MS.gene059337:CDS | 35.0% |
| AAATCTTTCCAGGCAAGAGA+AGG | - | chr3.4:85886771-85886790 | MS.gene059337:CDS | 40.0% | |
| ACATCTTACTGGCGAAGAAA+TGG | + | chr3.4:85885794-85885813 | None:intergenic | 40.0% | |
| AGAAAGCCGTAGTTGGATTT+GGG | - | chr3.4:85884949-85884968 | MS.gene059337:CDS | 40.0% | |
| AGATTTGCAGTTGAATGCTC+TGG | - | chr3.4:85885598-85885617 | MS.gene059337:CDS | 40.0% | |
| CAAGTACACAACACAAGTGA+CGG | - | chr3.4:85886284-85886303 | MS.gene059337:intron | 40.0% | |
| CATCTGAAAGCGGCTAATTA+AGG | + | chr3.4:85886127-85886146 | None:intergenic | 40.0% | |
| CATTCCATGTACTGTACTGT+TGG | - | chr3.4:85885145-85885164 | MS.gene059337:CDS | 40.0% | |
| CTTTGTCTTTGTTCCAGACA+GGG | + | chr3.4:85886866-85886885 | None:intergenic | 40.0% | |
| GAAAAGCAAGCCGACAAAAT+AGG | + | chr3.4:85885342-85885361 | None:intergenic | 40.0% | |
| GAAATGGTGCACAAAGAAAC+AGG | + | chr3.4:85885778-85885797 | None:intergenic | 40.0% | |
| GATATGGACCAGAGATTAAC+AGG | + | chr3.4:85886227-85886246 | None:intergenic | 40.0% | |
| GATTTGCAGTTGAATGCTCT+GGG | - | chr3.4:85885599-85885618 | MS.gene059337:CDS | 40.0% | |
| GCGTTAAAAATGAGCATGAG+TGG | + | chr3.4:85885434-85885453 | None:intergenic | 40.0% | |
| GGGATCTTTCTTATCTCTTC+TGG | - | chr3.4:85885619-85885638 | MS.gene059337:CDS | 40.0% | |
| GTTAATCTCTGGTCCATATC+TGG | - | chr3.4:85886227-85886246 | MS.gene059337:CDS | 40.0% | |
| TATTAAAGGCAGCAACGCTT+AGG | + | chr3.4:85885456-85885475 | None:intergenic | 40.0% | |
| TCTTGCCTGGAAAGATTTAG+AGG | + | chr3.4:85886769-85886788 | None:intergenic | 40.0% | |
| TCTTTGTCTTTGTTCCAGAC+AGG | + | chr3.4:85886867-85886886 | None:intergenic | 40.0% | |
| TGCCTTTCAAGGTACATGAA+AGG | - | chr3.4:85885865-85885884 | MS.gene059337:intron | 40.0% | |
| TGCCTTTCATGTACCTTGAA+AGG | + | chr3.4:85885870-85885889 | None:intergenic | 40.0% | |
| TTAAAAAGAGGGGTAAGGGA+TGG | + | chr3.4:85885912-85885931 | None:intergenic | 40.0% | |
| TTTCAAGGTACATGAAAGGC+AGG | - | chr3.4:85885869-85885888 | MS.gene059337:intron | 40.0% | |
| TTTGTCTTTGTTCCAGACAG+GGG | + | chr3.4:85886865-85886884 | None:intergenic | 40.0% | |
| ! | AATGGGTATTTTGTTGGCCA+TGG | - | chr3.4:85886568-85886587 | MS.gene059337:intron | 40.0% |
| ! | ACATGCCTTGTATTGGCATT+TGG | - | chr3.4:85886506-85886525 | MS.gene059337:intron | 40.0% |
| ! | CACTATCCAGAAGAAGTACA+AGG | - | chr3.4:85886152-85886171 | MS.gene059337:CDS | 40.0% |
| ! | GCTAACGGATACCATAATTC+AGG | + | chr3.4:85885408-85885427 | None:intergenic | 40.0% |
| ! | GTATTTTGTTGGCCATGGTT+GGG | - | chr3.4:85886573-85886592 | MS.gene059337:intron | 40.0% |
| ! | TGATTGCAAGCTTTGTCATC+TGG | + | chr3.4:85885127-85885146 | None:intergenic | 40.0% |
| AAGGTACATGAAAGGCAGGA+AGG | - | chr3.4:85885873-85885892 | MS.gene059337:intron | 45.0% | |
| ACCCATGAGGAGGATAGATA+GGG | + | chr3.4:85885558-85885577 | None:intergenic | 45.0% | |
| AGCAAGCCGACAAAATAGGT+AGG | + | chr3.4:85885338-85885357 | None:intergenic | 45.0% | |
| AGCCTAGGGTTCAATTCTGT+CGG | - | chr3.4:85885008-85885027 | MS.gene059337:intron | 45.0% | |
| AGGTACATGAAAGGCAGGAA+GGG | - | chr3.4:85885874-85885893 | MS.gene059337:intron | 45.0% | |
| CAGAAAGCCGTAGTTGGATT+TGG | - | chr3.4:85884948-85884967 | MS.gene059337:CDS | 45.0% | |
| CAGGTCAAAACAATGAGCCA+GGG | + | chr3.4:85885389-85885408 | None:intergenic | 45.0% | |
| CAGTCGAGTAAAACCAACCT+GGG | + | chr3.4:85886669-85886688 | None:intergenic | 45.0% | |
| CCAAGAACCTGATAAGTGAC+TGG | + | chr3.4:85886476-85886495 | None:intergenic | 45.0% | |
| CCAATACAAGGCATGTCTTC+AGG | + | chr3.4:85886502-85886521 | None:intergenic | 45.0% | |
| CCAGTCACTTATCAGGTTCT+TGG | - | chr3.4:85886473-85886492 | MS.gene059337:intron | 45.0% | |
| CCTGAAGACATGCCTTGTAT+TGG | - | chr3.4:85886499-85886518 | MS.gene059337:intron | 45.0% | |
| CGGGTTAAAAAGAGGGGTAA+GGG | + | chr3.4:85885916-85885935 | None:intergenic | 45.0% | |
| GACAGAAATTGAGATGAGGC+AGG | + | chr3.4:85886417-85886436 | None:intergenic | 45.0% | |
| GACATCTCCAGTCACTTATC+AGG | - | chr3.4:85886466-85886485 | MS.gene059337:intron | 45.0% | |
| GTCTCCAACAGTACAGTACA+TGG | + | chr3.4:85885152-85885171 | None:intergenic | 45.0% | |
| TCAAAACAATGAGCCAGGGA+GGG | + | chr3.4:85885385-85885404 | None:intergenic | 45.0% | |
| TCAGGTCAAAACAATGAGCC+AGG | + | chr3.4:85885390-85885409 | None:intergenic | 45.0% | |
| TCAGTCGAGTAAAACCAACC+TGG | + | chr3.4:85886670-85886689 | None:intergenic | 45.0% | |
| TCCCTATCTATCCTCCTCAT+GGG | - | chr3.4:85885554-85885573 | MS.gene059337:CDS | 45.0% | |
| TCTCTTGTGCTCACTCTGAT+TGG | - | chr3.4:85885941-85885960 | MS.gene059337:intron | 45.0% | |
| TTCCCTATCTATCCTCCTCA+TGG | - | chr3.4:85885553-85885572 | MS.gene059337:CDS | 45.0% | |
| TTGCAATTCCAACACCCATG+AGG | + | chr3.4:85885571-85885590 | None:intergenic | 45.0% | |
| TTTGAGCAGAAAGCCGTAGT+TGG | - | chr3.4:85884942-85884961 | MS.gene059337:CDS | 45.0% | |
| ! | AACAGGGTTGCTGCTTGATA+TGG | + | chr3.4:85886210-85886229 | None:intergenic | 45.0% |
| ! | AGAGCTTGCGGGTTAAAAAG+AGG | + | chr3.4:85885924-85885943 | None:intergenic | 45.0% |
| ! | AGCTTGCGGGTTAAAAAGAG+GGG | + | chr3.4:85885922-85885941 | None:intergenic | 45.0% |
| ! | CTGTTGGAGACCCTTTTTCT+CGG | - | chr3.4:85885161-85885180 | MS.gene059337:CDS | 45.0% |
| ! | GAGCTTGCGGGTTAAAAAGA+GGG | + | chr3.4:85885923-85885942 | None:intergenic | 45.0% |
| ! | GGTATTTTGTTGGCCATGGT+TGG | - | chr3.4:85886572-85886591 | MS.gene059337:intron | 45.0% |
| ! | TGTTGGAGACCCTTTTTCTC+GGG | - | chr3.4:85885162-85885181 | MS.gene059337:CDS | 45.0% |
| AGCCGACAGAATTGAACCCT+AGG | + | chr3.4:85885013-85885032 | None:intergenic | 50.0% | |
| AGTGAGCACAAGAGAGCTTG+CGG | + | chr3.4:85885936-85885955 | None:intergenic | 50.0% | |
| AGTGTCACAGAATGTTCCCG+TGG | + | chr3.4:85886742-85886761 | None:intergenic | 50.0% | |
| CAATTCCAACACCCATGAGG+AGG | + | chr3.4:85885568-85885587 | None:intergenic | 50.0% | |
| CACCCATGAGGAGGATAGAT+AGG | + | chr3.4:85885559-85885578 | None:intergenic | 50.0% | |
| GAGCATGAGTGGATGGCTAA+CGG | + | chr3.4:85885423-85885442 | None:intergenic | 50.0% | |
| GATGCTGTGATTGACCCTGT+GGG | - | chr3.4:85886831-85886850 | MS.gene059337:CDS | 50.0% | |
| GCAAAAAGCTGTTGAAGCCG+CGG | - | chr3.4:85886634-85886653 | MS.gene059337:CDS | 50.0% | |
| GCAGCAACCCTGTTAATCTC+TGG | - | chr3.4:85886216-85886235 | MS.gene059337:CDS | 50.0% | |
| GTCAAAACAATGAGCCAGGG+AGG | + | chr3.4:85885386-85885405 | None:intergenic | 50.0% | |
| TCTATCCTCCTCATGGGTGT+TGG | - | chr3.4:85885560-85885579 | MS.gene059337:CDS | 50.0% | |
| TTCTCCAGCTGAATGGGTCT+TGG | + | chr3.4:85886544-85886563 | None:intergenic | 50.0% | |
| ! | GCGGGTTAAAAAGAGGGGTA+AGG | + | chr3.4:85885917-85885936 | None:intergenic | 50.0% |
| !! | CTATTTTTCCATGCCCTCCC+TGG | - | chr3.4:85885369-85885388 | MS.gene059337:CDS | 50.0% |
| ACAGGGGACTTATGTCCCAC+AGG | + | chr3.4:85886849-85886868 | None:intergenic | 55.0% | |
| CAGATTCGCCTTCTCTTGCC+TGG | + | chr3.4:85886782-85886801 | None:intergenic | 55.0% | |
| CAGGGGACTTATGTCCCACA+GGG | + | chr3.4:85886848-85886867 | None:intergenic | 55.0% | |
| CGATGCTGTGATTGACCCTG+TGG | - | chr3.4:85886830-85886849 | MS.gene059337:CDS | 55.0% | |
| GGCAGGAAGGGTTAACATGC+AGG | - | chr3.4:85885886-85885905 | MS.gene059337:intron | 55.0% | |
| GTGAGCACAAGAGAGCTTGC+GGG | + | chr3.4:85885935-85885954 | None:intergenic | 55.0% | |
| TGCTCCAAGACCCATTCAGC+TGG | - | chr3.4:85886537-85886556 | MS.gene059337:intron | 55.0% | |
| TGGGACATAAGTCCCCTGTC+TGG | - | chr3.4:85886850-85886869 | MS.gene059337:CDS | 55.0% | |
| ACAATGAGCCAGGGAGGGCA+TGG | + | chr3.4:85885380-85885399 | None:intergenic | 60.0% | |
| AACCTGGGATGCCTGTGCCG+CGG | + | chr3.4:85886654-85886673 | None:intergenic | 65.0% | |
| AGCTGTTGAAGCCGCGGCAC+AGG | - | chr3.4:85886640-85886659 | MS.gene059337:CDS | 65.0% | |
| GCGGCACAGGCATCCCAGGT+TGG | - | chr3.4:85886653-85886672 | MS.gene059337:CDS | 70.0% | |
| AGCCGCGGCACAGGCATCCC+AGG | - | chr3.4:85886649-85886668 | MS.gene059337:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 85884918 | 85886890 | 85884918 | ID=MS.gene059337 |
| chr3.4 | mRNA | 85884918 | 85886890 | 85884918 | ID=MS.gene059337.t1;Parent=MS.gene059337 |
| chr3.4 | exon | 85886768 | 85886890 | 85886768 | ID=MS.gene059337.t1.exon1;Parent=MS.gene059337.t1 |
| chr3.4 | CDS | 85886768 | 85886890 | 85886768 | ID=cds.MS.gene059337.t1;Parent=MS.gene059337.t1 |
| chr3.4 | exon | 85886613 | 85886680 | 85886613 | ID=MS.gene059337.t1.exon2;Parent=MS.gene059337.t1 |
| chr3.4 | CDS | 85886613 | 85886680 | 85886613 | ID=cds.MS.gene059337.t1;Parent=MS.gene059337.t1 |
| chr3.4 | exon | 85886138 | 85886270 | 85886138 | ID=MS.gene059337.t1.exon3;Parent=MS.gene059337.t1 |
| chr3.4 | CDS | 85886138 | 85886270 | 85886138 | ID=cds.MS.gene059337.t1;Parent=MS.gene059337.t1 |
| chr3.4 | exon | 85885503 | 85885664 | 85885503 | ID=MS.gene059337.t1.exon4;Parent=MS.gene059337.t1 |
| chr3.4 | CDS | 85885503 | 85885664 | 85885503 | ID=cds.MS.gene059337.t1;Parent=MS.gene059337.t1 |
| chr3.4 | exon | 85885138 | 85885410 | 85885138 | ID=MS.gene059337.t1.exon5;Parent=MS.gene059337.t1 |
| chr3.4 | CDS | 85885138 | 85885410 | 85885138 | ID=cds.MS.gene059337.t1;Parent=MS.gene059337.t1 |
| chr3.4 | exon | 85884918 | 85885025 | 85884918 | ID=MS.gene059337.t1.exon6;Parent=MS.gene059337.t1 |
| chr3.4 | CDS | 85884918 | 85885025 | 85884918 | ID=cds.MS.gene059337.t1;Parent=MS.gene059337.t1 |
| Gene Sequence |
| Protein sequence |
