Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049539.t1 | XP_013460436.1 | 93.7 | 221 | 8 | 1 | 1 | 215 | 1 | 221 | 1.60E-113 | 418.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049539.t1 | Q9FJK3 | 52.0 | 175 | 82 | 1 | 1 | 173 | 1 | 175 | 1.5e-43 | 177.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049539.t1 | A0A072UXE2 | 93.7 | 221 | 8 | 1 | 1 | 215 | 1 | 221 | 1.2e-113 | 418.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene049539.t1 | TF | MADS-M-type |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049539 | MS.gene38445 | 0.894732 | 1.87E-75 | -1.69E-46 |
| MS.gene049539 | MS.gene41510 | 0.917365 | 5.80E-86 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049539.t1 | MTR_3g466980 | 93.665 | 221 | 8 | 1 | 1 | 215 | 1 | 221 | 5.36e-154 | 426 |
| MS.gene049539.t1 | MTR_3g065100 | 53.361 | 238 | 87 | 4 | 1 | 215 | 1 | 237 | 1.15e-74 | 226 |
| MS.gene049539.t1 | MTR_8g036130 | 47.984 | 248 | 91 | 7 | 1 | 215 | 1 | 243 | 5.97e-63 | 196 |
| MS.gene049539.t1 | MTR_4g063790 | 55.491 | 173 | 72 | 3 | 1 | 171 | 1 | 170 | 2.89e-59 | 184 |
| MS.gene049539.t1 | MTR_3g467080 | 52.174 | 161 | 76 | 1 | 1 | 160 | 1 | 161 | 9.72e-56 | 175 |
| MS.gene049539.t1 | MTR_4g032620 | 50.641 | 156 | 76 | 1 | 1 | 155 | 1 | 156 | 3.26e-53 | 171 |
| MS.gene049539.t1 | MTR_4g031910 | 43.172 | 227 | 113 | 5 | 1 | 214 | 1 | 224 | 8.11e-51 | 164 |
| MS.gene049539.t1 | MTR_3g466830 | 47.712 | 153 | 80 | 0 | 3 | 155 | 2 | 154 | 1.16e-50 | 162 |
| MS.gene049539.t1 | MTR_4g032260 | 52.866 | 157 | 73 | 1 | 1 | 156 | 1 | 157 | 2.75e-49 | 158 |
| MS.gene049539.t1 | MTR_4g032290 | 53.548 | 155 | 71 | 1 | 1 | 154 | 1 | 155 | 1.38e-48 | 159 |
| MS.gene049539.t1 | MTR_5g075380 | 43.125 | 160 | 91 | 0 | 1 | 160 | 1 | 160 | 7.41e-47 | 152 |
| MS.gene049539.t1 | MTR_2g016210 | 43.956 | 182 | 96 | 3 | 1 | 181 | 1 | 177 | 1.25e-46 | 154 |
| MS.gene049539.t1 | MTR_2g035610 | 59.836 | 122 | 49 | 0 | 1 | 122 | 1 | 122 | 1.28e-46 | 150 |
| MS.gene049539.t1 | MTR_3g031240 | 48.387 | 155 | 79 | 1 | 1 | 154 | 1 | 155 | 1.89e-45 | 149 |
| MS.gene049539.t1 | MTR_3g031100 | 42.045 | 176 | 99 | 2 | 1 | 173 | 1 | 176 | 4.71e-44 | 147 |
| MS.gene049539.t1 | MTR_5g047580 | 45.455 | 154 | 83 | 1 | 1 | 154 | 1 | 153 | 6.23e-42 | 139 |
| MS.gene049539.t1 | MTR_3g465410 | 49.306 | 144 | 70 | 2 | 29 | 171 | 1 | 142 | 7.55e-41 | 136 |
| MS.gene049539.t1 | MTR_3g466890 | 39.241 | 158 | 96 | 0 | 3 | 160 | 2 | 159 | 6.67e-39 | 132 |
| MS.gene049539.t1 | MTR_2g035580 | 44.937 | 158 | 87 | 0 | 1 | 158 | 1 | 158 | 6.01e-37 | 127 |
| MS.gene049539.t1 | MTR_7g011950 | 47.059 | 153 | 80 | 1 | 1 | 153 | 1 | 152 | 1.28e-35 | 123 |
| MS.gene049539.t1 | MTR_1g090697 | 37.662 | 154 | 95 | 1 | 1 | 154 | 1 | 153 | 1.72e-34 | 120 |
| MS.gene049539.t1 | MTR_1g084950 | 45.455 | 154 | 83 | 1 | 1 | 154 | 1 | 153 | 3.12e-34 | 120 |
| MS.gene049539.t1 | MTR_4g028720 | 45.752 | 153 | 82 | 1 | 1 | 153 | 1 | 152 | 6.02e-34 | 119 |
| MS.gene049539.t1 | MTR_1g077390 | 42.484 | 153 | 87 | 1 | 1 | 153 | 1 | 152 | 1.13e-33 | 118 |
| MS.gene049539.t1 | MTR_1g090783 | 38.158 | 152 | 93 | 1 | 3 | 154 | 2 | 152 | 2.56e-33 | 117 |
| MS.gene049539.t1 | MTR_3g466900 | 41.129 | 124 | 73 | 0 | 32 | 155 | 2 | 125 | 9.77e-33 | 115 |
| MS.gene049539.t1 | MTR_1g077320 | 43.791 | 153 | 85 | 1 | 1 | 153 | 1 | 152 | 4.17e-32 | 114 |
| MS.gene049539.t1 | MTR_3g466930 | 40.458 | 131 | 78 | 0 | 32 | 162 | 2 | 132 | 9.23e-32 | 112 |
| MS.gene049539.t1 | MTR_1g090710 | 36.129 | 155 | 97 | 2 | 1 | 154 | 1 | 154 | 5.16e-30 | 109 |
| MS.gene049539.t1 | MTR_1g077300 | 43.791 | 153 | 83 | 2 | 1 | 153 | 1 | 150 | 5.79e-29 | 106 |
| MS.gene049539.t1 | MTR_5g047560 | 36.364 | 154 | 81 | 2 | 1 | 154 | 1 | 137 | 2.45e-24 | 94.0 |
| MS.gene049539.t1 | MTR_4g019670 | 34.146 | 164 | 104 | 2 | 1 | 161 | 1 | 163 | 1.69e-23 | 97.8 |
| MS.gene049539.t1 | MTR_7g055800 | 42.857 | 119 | 40 | 2 | 1 | 119 | 1 | 91 | 1.38e-22 | 87.8 |
| MS.gene049539.t1 | MTR_4g028800 | 54.167 | 72 | 31 | 1 | 1 | 72 | 1 | 70 | 2.91e-22 | 86.7 |
| MS.gene049539.t1 | MTR_7g106510 | 31.098 | 164 | 109 | 2 | 1 | 161 | 1 | 163 | 4.31e-22 | 94.0 |
| MS.gene049539.t1 | MTR_4g084780 | 75.000 | 52 | 13 | 0 | 74 | 125 | 1 | 52 | 2.24e-20 | 84.0 |
| MS.gene049539.t1 | MTR_3g093900 | 28.947 | 152 | 108 | 0 | 3 | 154 | 6 | 157 | 6.51e-20 | 87.8 |
| MS.gene049539.t1 | MTR_7g055790 | 43.243 | 111 | 45 | 1 | 1 | 111 | 59 | 151 | 1.93e-19 | 81.6 |
| MS.gene049539.t1 | MTR_7g055940 | 41.905 | 105 | 33 | 2 | 1 | 105 | 1 | 77 | 7.85e-18 | 75.1 |
| MS.gene049539.t1 | MTR_6g018920 | 25.786 | 159 | 104 | 5 | 1 | 153 | 1 | 151 | 1.60e-15 | 74.3 |
| MS.gene049539.t1 | MTR_2g035590 | 48.193 | 83 | 42 | 1 | 74 | 155 | 1 | 83 | 3.23e-15 | 68.9 |
| MS.gene049539.t1 | MTR_1g114730 | 28.369 | 141 | 87 | 5 | 1 | 135 | 1 | 133 | 1.25e-14 | 72.0 |
| MS.gene049539.t1 | MTR_6g005440 | 25.333 | 225 | 140 | 9 | 1 | 215 | 1 | 207 | 1.77e-13 | 68.2 |
| MS.gene049539.t1 | MTR_4g045977 | 28.676 | 136 | 91 | 4 | 1 | 131 | 1 | 135 | 4.00e-13 | 67.8 |
| MS.gene049539.t1 | MTR_4g107170 | 30.147 | 136 | 89 | 4 | 1 | 131 | 1 | 135 | 1.48e-12 | 65.1 |
| MS.gene049539.t1 | MTR_6g005450 | 29.204 | 113 | 73 | 3 | 1 | 107 | 1 | 112 | 1.52e-12 | 65.9 |
| MS.gene049539.t1 | MTR_4g109830 | 29.586 | 169 | 101 | 4 | 1 | 165 | 1 | 155 | 6.62e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049539.t1 | AT5G48670 | 52.000 | 175 | 82 | 1 | 1 | 173 | 1 | 175 | 5.18e-54 | 176 |
| MS.gene049539.t1 | AT3G05860 | 39.801 | 201 | 113 | 3 | 1 | 195 | 1 | 199 | 2.79e-41 | 139 |
| MS.gene049539.t1 | AT3G05860 | 40.838 | 191 | 105 | 3 | 1 | 185 | 1 | 189 | 3.16e-40 | 138 |
| MS.gene049539.t1 | AT3G05860 | 41.304 | 184 | 100 | 3 | 1 | 178 | 1 | 182 | 1.98e-39 | 136 |
| MS.gene049539.t1 | AT1G65300 | 40.789 | 152 | 90 | 0 | 3 | 154 | 2 | 153 | 1.06e-37 | 132 |
| MS.gene049539.t1 | AT5G26650 | 40.397 | 151 | 90 | 0 | 4 | 154 | 2 | 152 | 1.79e-35 | 129 |
| MS.gene049539.t1 | AT5G27810 | 60.215 | 93 | 37 | 0 | 29 | 121 | 1 | 93 | 1.80e-35 | 122 |
| MS.gene049539.t1 | AT1G65330 | 39.474 | 152 | 92 | 0 | 3 | 154 | 2 | 153 | 5.18e-35 | 125 |
| MS.gene049539.t1 | AT1G31630 | 38.816 | 152 | 90 | 3 | 3 | 153 | 2 | 151 | 6.04e-34 | 124 |
| MS.gene049539.t1 | AT5G27960 | 38.411 | 151 | 93 | 0 | 4 | 154 | 2 | 152 | 4.68e-33 | 121 |
| MS.gene049539.t1 | AT1G31640 | 40.000 | 150 | 89 | 1 | 3 | 152 | 2 | 150 | 4.99e-33 | 124 |
| MS.gene049539.t1 | AT5G26630 | 40.909 | 154 | 91 | 0 | 1 | 154 | 1 | 154 | 7.02e-33 | 118 |
| MS.gene049539.t1 | AT2G28700 | 36.667 | 150 | 93 | 2 | 1 | 149 | 1 | 149 | 1.38e-28 | 109 |
| MS.gene049539.t1 | AT1G22590 | 36.025 | 161 | 94 | 2 | 1 | 158 | 1 | 155 | 3.84e-26 | 99.4 |
| MS.gene049539.t1 | AT5G06500 | 29.714 | 175 | 119 | 2 | 1 | 175 | 1 | 171 | 6.66e-23 | 92.8 |
| MS.gene049539.t1 | AT5G26580 | 33.117 | 154 | 89 | 1 | 1 | 154 | 1 | 140 | 6.76e-23 | 94.7 |
| MS.gene049539.t1 | AT2G40210 | 42.188 | 128 | 74 | 0 | 1 | 128 | 1 | 128 | 2.08e-22 | 94.0 |
| MS.gene049539.t1 | AT2G15660 | 29.268 | 123 | 80 | 2 | 38 | 157 | 31 | 149 | 3.35e-12 | 64.3 |
| MS.gene049539.t1 | AT5G55690 | 35.714 | 98 | 56 | 2 | 1 | 91 | 1 | 98 | 1.89e-11 | 62.4 |
| MS.gene049539.t1 | AT5G55690 | 35.714 | 98 | 56 | 2 | 1 | 91 | 1 | 98 | 1.89e-11 | 62.4 |
Find 52 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTGTGCCACATGGTTTC+TGG | 0.169034 | 3.2:-57725606 | MS.gene049539:CDS |
| TCCCCTCCTCTTTGTGTCAC+TGG | 0.360448 | 3.2:+57726801 | None:intergenic |
| CTCCAGTCACATTTCCAGCT+TGG | 0.368302 | 3.2:+57725734 | None:intergenic |
| AAATGTGACTGGAGGGGAGC+AGG | 0.397749 | 3.2:-57725725 | MS.gene049539:CDS |
| AACAAAGGAATGACAACAAA+AGG | 0.420798 | 3.2:-57725918 | MS.gene049539:CDS |
| GATGTGTTACCATTTGAAAA+TGG | 0.433134 | 3.2:-57725631 | MS.gene049539:CDS |
| GGCCAATGCTGCCTTTGCAT+TGG | 0.439467 | 3.2:+57725682 | None:intergenic |
| ACGATCCTCAACCAGAGGTT+TGG | 0.446002 | 3.2:-57726074 | MS.gene049539:CDS |
| AGAGGTTTGGCCTTCGCCAT+GGG | 0.456027 | 3.2:-57726061 | MS.gene049539:CDS |
| TTCGCCATGGGGAGTGCAAA+AGG | 0.457021 | 3.2:-57726049 | MS.gene049539:CDS |
| CACATCACCAATGTTGTTGT+TGG | 0.473556 | 3.2:+57725648 | None:intergenic |
| GACTGGAGGGGAGCAGGGAA+TGG | 0.473606 | 3.2:-57725719 | MS.gene049539:CDS |
| GCTCTAGTTCGGGCAATCTC+CGG | 0.474104 | 3.2:+57726013 | None:intergenic |
| ATCCAATGCAAAGGCAGCAT+TGG | 0.475495 | 3.2:-57725684 | MS.gene049539:CDS |
| CATGGCGAAGGCCAAACCTC+TGG | 0.486204 | 3.2:+57726063 | None:intergenic |
| CGATCAGTCTCAAGCTGAAG+AGG | 0.491578 | 3.2:-57725767 | MS.gene049539:CDS |
| CAGAGGTTTGGCCTTCGCCA+TGG | 0.503800 | 3.2:-57726062 | MS.gene049539:CDS |
| AATGTGACTGGAGGGGAGCA+GGG | 0.507720 | 3.2:-57725724 | MS.gene049539:CDS |
| AAAAGGTGCTGTCAAGGTTC+CGG | 0.507965 | 3.2:-57726032 | MS.gene049539:CDS |
| CTTTGTGTCACTGGTGATGT+AGG | 0.508282 | 3.2:+57726810 | None:intergenic |
| AAGAGAGTTTCTTGAAGCAA+AGG | 0.517056 | 3.2:-57725969 | MS.gene049539:CDS |
| ATGTTTCAATGCCTTAATGC+TGG | 0.536723 | 3.2:-57725877 | MS.gene049539:CDS |
| CGCTGCCATGACTAGGAAGA+AGG | 0.539960 | 3.2:-57726842 | None:intergenic |
| TTCTCAACGCTGCCATGACT+AGG | 0.541469 | 3.2:-57726849 | None:intergenic |
| GATTTCACCAACAACAACAT+TGG | 0.549412 | 3.2:-57725655 | MS.gene049539:CDS |
| ATGAAATCAGCACGCTCTGT+GGG | 0.552209 | 3.2:-57726128 | MS.gene049539:CDS |
| AACCAAGCTGGAAATGTGAC+TGG | 0.555977 | 3.2:-57725736 | MS.gene049539:CDS |
| AGAACTTGAAACAGATCGAT+AGG | 0.558346 | 3.2:-57725795 | MS.gene049539:CDS |
| GAGTGCAAAAGGTGCTGTCA+AGG | 0.560319 | 3.2:-57726038 | MS.gene049539:CDS |
| GAGGTTGTTCAAAACCAAGC+TGG | 0.560495 | 3.2:-57725748 | MS.gene049539:CDS |
| GCTCACCTTCTTCCTAGTCA+TGG | 0.576647 | 3.2:+57726837 | None:intergenic |
| CACCAGTGACACAAAGAGGA+GGG | 0.584600 | 3.2:-57726803 | MS.gene049539:CDS |
| AAGCTGGAAATGTGACTGGA+GGG | 0.588063 | 3.2:-57725732 | MS.gene049539:CDS |
| GAAGGCCAAACCTCTGGTTG+AGG | 0.594220 | 3.2:+57726069 | None:intergenic |
| GCAAAGGCAGCATTGGCCAA+TGG | 0.595451 | 3.2:-57725677 | MS.gene049539:CDS |
| TTGTTGTTGGTGAAATCCAT+TGG | 0.595560 | 3.2:+57725661 | None:intergenic |
| AAGAACAGCTGAAGAAACAA+AGG | 0.602104 | 3.2:-57725933 | MS.gene049539:CDS |
| AAGGAATGACAACAAAAGGA+AGG | 0.606288 | 3.2:-57725914 | MS.gene049539:CDS |
| TGTCACTGGTGATGTAGGCA+AGG | 0.608234 | 3.2:+57726815 | None:intergenic |
| AGCTGGAAATGTGACTGGAG+GGG | 0.624312 | 3.2:-57725731 | MS.gene049539:CDS |
| GAGGTTTGGCCTTCGCCATG+GGG | 0.626589 | 3.2:-57726060 | MS.gene049539:CDS |
| ACCAGTGACACAAAGAGGAG+GGG | 0.628101 | 3.2:-57726802 | MS.gene049539:CDS |
| ACATCACCAGTGACACAAAG+AGG | 0.631331 | 3.2:-57726807 | MS.gene049539:CDS |
| CAAGCTGGAAATGTGACTGG+AGG | 0.651743 | 3.2:-57725733 | MS.gene049539:CDS |
| ATGATCTCAATGATATCTCA+TGG | 0.651968 | 3.2:-57725828 | MS.gene049539:CDS |
| ACATTGCTGATCCAATGCAA+AGG | 0.652826 | 3.2:-57725693 | MS.gene049539:CDS |
| TGAGATCATCCATGCCAACA+TGG | 0.658598 | 3.2:+57725842 | None:intergenic |
| AATGGTAACATTGTGCCACA+TGG | 0.661986 | 3.2:-57725613 | MS.gene049539:CDS |
| TCAAAACGATCCTCAACCAG+AGG | 0.673462 | 3.2:-57726079 | MS.gene049539:CDS |
| GATGAAATCAGCACGCTCTG+TGG | 0.675321 | 3.2:-57726129 | MS.gene049539:CDS |
| TCACCAGTGACACAAAGAGG+AGG | 0.677630 | 3.2:-57726804 | MS.gene049539:CDS |
| GATCAAGGCCAGAAACCATG+TGG | 0.733784 | 3.2:+57725598 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAATAAAATAAAAATT+GGG | + | chr3.2:57726035-57726054 | None:intergenic | 0.0% |
| !! | TATTTAAATAAAATAAAAAT+TGG | + | chr3.2:57726036-57726055 | None:intergenic | 0.0% |
| !!! | TAGTTTTTATCATTTTTCAA+TGG | + | chr3.2:57725797-57725816 | None:intergenic | 15.0% |
| !!! | TGAAATTATTTTTATCTCAT+TGG | - | chr3.2:57726103-57726122 | MS.gene049539:CDS | 15.0% |
| !! | AATGATTTAAACAACAAAGT+AGG | + | chr3.2:57726238-57726257 | None:intergenic | 20.0% |
| !! | ACATTCAAGAAAAGAAAAAA+TGG | - | chr3.2:57725657-57725676 | MS.gene049539:CDS | 20.0% |
| !!! | CTTGCATAGTTTTATTTTTT+TGG | - | chr3.2:57725728-57725747 | MS.gene049539:CDS | 20.0% |
| ! | AAATCTCTCACTTAATTTAG+TGG | + | chr3.2:57725984-57726003 | None:intergenic | 25.0% |
| ! | AATGGTAATTACAACATGTA+TGG | + | chr3.2:57725779-57725798 | None:intergenic | 25.0% |
| ! | TTAGTGGCAAACAAATTTAT+AGG | + | chr3.2:57725968-57725987 | None:intergenic | 25.0% |
| !! | ACAATGTTACCATTTTCAAA+TGG | + | chr3.2:57726816-57726835 | None:intergenic | 25.0% |
| !!! | AGAGATTTCATTTTGTTGTT+TGG | - | chr3.2:57725996-57726015 | MS.gene049539:CDS | 25.0% |
| !!! | CTTGTTGTATTTTTTATACC+AGG | - | chr3.2:57726267-57726286 | MS.gene049539:intron | 25.0% |
| !!! | TTTTTATCTCATTGGTGTTT+CGG | - | chr3.2:57726111-57726130 | MS.gene049539:CDS | 25.0% |
| AACAAAGGAATGACAACAAA+AGG | - | chr3.2:57726517-57726536 | MS.gene049539:intron | 30.0% | |
| ATGATCTCAATGATATCTCA+TGG | - | chr3.2:57726607-57726626 | MS.gene049539:intron | 30.0% | |
| ATGCAAGATTGATATAGACA+TGG | + | chr3.2:57725715-57725734 | None:intergenic | 30.0% | |
| ATTTAACATGTTTGTCCCTT+TGG | - | chr3.2:57726057-57726076 | MS.gene049539:CDS | 30.0% | |
| GATGTGTTACCATTTGAAAA+TGG | - | chr3.2:57726804-57726823 | MS.gene049539:CDS | 30.0% | |
| !! | TTTTATCTCATTGGTGTTTC+GGG | - | chr3.2:57726112-57726131 | MS.gene049539:CDS | 30.0% |
| !!! | TTTCATTTTGTTGTTTGGCT+TGG | - | chr3.2:57726001-57726020 | MS.gene049539:CDS | 30.0% |
| !!! | TTTTTTGCTTTGCTCTAGTT+CGG | + | chr3.2:57726436-57726455 | None:intergenic | 30.0% |
| AAGAACAGCTGAAGAAACAA+AGG | - | chr3.2:57726502-57726521 | MS.gene049539:intron | 35.0% | |
| AAGAGAGTTTCTTGAAGCAA+AGG | - | chr3.2:57726466-57726485 | MS.gene049539:intron | 35.0% | |
| AAGGAATGACAACAAAAGGA+AGG | - | chr3.2:57726521-57726540 | MS.gene049539:intron | 35.0% | |
| AGAACTTGAAACAGATCGAT+AGG | - | chr3.2:57726640-57726659 | MS.gene049539:intron | 35.0% | |
| ATGTTTCAATGCCTTAATGC+TGG | - | chr3.2:57726558-57726577 | MS.gene049539:intron | 35.0% | |
| CAAAAATCTGACCAGCATTA+AGG | + | chr3.2:57726572-57726591 | None:intergenic | 35.0% | |
| GATTTCACCAACAACAACAT+TGG | - | chr3.2:57726780-57726799 | MS.gene049539:CDS | 35.0% | |
| TCAATCTTCTTGATCAAACC+TGG | + | chr3.2:57726288-57726307 | None:intergenic | 35.0% | |
| ! | TTGTTGTTGGTGAAATCCAT+TGG | + | chr3.2:57726777-57726796 | None:intergenic | 35.0% |
| !! | TTTTTGCTTTGCTCTAGTTC+GGG | + | chr3.2:57726435-57726454 | None:intergenic | 35.0% |
| AATGGTAACATTGTGCCACA+TGG | - | chr3.2:57726822-57726841 | MS.gene049539:CDS | 40.0% | |
| ACATTGCTGATCCAATGCAA+AGG | - | chr3.2:57726742-57726761 | MS.gene049539:intron | 40.0% | |
| ATATGAGCACCTTTCACAAC+TGG | + | chr3.2:57725901-57725920 | None:intergenic | 40.0% | |
| CACATCACCAATGTTGTTGT+TGG | + | chr3.2:57726790-57726809 | None:intergenic | 40.0% | |
| GTTCAAATCCCAGTTGTGAA+AGG | - | chr3.2:57725889-57725908 | MS.gene049539:CDS | 40.0% | |
| TATGAGCACCTTTCACAACT+GGG | + | chr3.2:57725900-57725919 | None:intergenic | 40.0% | |
| ! | GATTTTTGACCATGTTGGCA+TGG | - | chr3.2:57726584-57726603 | MS.gene049539:intron | 40.0% |
| ! | GGTCAGATTTTTGACCATGT+TGG | - | chr3.2:57726579-57726598 | MS.gene049539:intron | 40.0% |
| ! | TCAGCTGTTCTTGAGCTTTT+TGG | + | chr3.2:57726494-57726513 | None:intergenic | 40.0% |
| AACCAAGCTGGAAATGTGAC+TGG | - | chr3.2:57726699-57726718 | MS.gene049539:intron | 45.0% | |
| AAGCTGGAAATGTGACTGGA+GGG | - | chr3.2:57726703-57726722 | MS.gene049539:intron | 45.0% | |
| ACATCACCAGTGACACAAAG+AGG | - | chr3.2:57725628-57725647 | MS.gene049539:CDS | 45.0% | |
| ACATTGTGCCACATGGTTTC+TGG | - | chr3.2:57726829-57726848 | MS.gene049539:CDS | 45.0% | |
| ATCCAATGCAAAGGCAGCAT+TGG | - | chr3.2:57726751-57726770 | MS.gene049539:intron | 45.0% | |
| ATGAAATCAGCACGCTCTGT+GGG | - | chr3.2:57726307-57726326 | MS.gene049539:intron | 45.0% | |
| CACACAGACGCTATTCCAAA+GGG | + | chr3.2:57726075-57726094 | None:intergenic | 45.0% | |
| GAGGTTGTTCAAAACCAAGC+TGG | - | chr3.2:57726687-57726706 | MS.gene049539:intron | 45.0% | |
| TCAAAACGATCCTCAACCAG+AGG | - | chr3.2:57726356-57726375 | MS.gene049539:intron | 45.0% | |
| TCACACAGACGCTATTCCAA+AGG | + | chr3.2:57726076-57726095 | None:intergenic | 45.0% | |
| TGAGATCATCCATGCCAACA+TGG | + | chr3.2:57726596-57726615 | None:intergenic | 45.0% | |
| ! | CTTTGTGTCACTGGTGATGT+AGG | + | chr3.2:57725628-57725647 | None:intergenic | 45.0% |
| !! | AAAAGGTGCTGTCAAGGTTC+CGG | - | chr3.2:57726403-57726422 | MS.gene049539:intron | 45.0% |
| !! | TTTAAATAAAATAAAAATTG+GGG | + | chr3.2:57726034-57726053 | None:intergenic | 5.0% |
| ACCAGTGACACAAAGAGGAG+GGG | - | chr3.2:57725633-57725652 | MS.gene049539:CDS | 50.0% | |
| ACGATCCTCAACCAGAGGTT+TGG | - | chr3.2:57726361-57726380 | MS.gene049539:intron | 50.0% | |
| AGCTGGAAATGTGACTGGAG+GGG | - | chr3.2:57726704-57726723 | MS.gene049539:intron | 50.0% | |
| CAAGCTGGAAATGTGACTGG+AGG | - | chr3.2:57726702-57726721 | MS.gene049539:intron | 50.0% | |
| CACCAGTGACACAAAGAGGA+GGG | - | chr3.2:57725632-57725651 | MS.gene049539:CDS | 50.0% | |
| CGATCAGTCTCAAGCTGAAG+AGG | - | chr3.2:57726668-57726687 | MS.gene049539:intron | 50.0% | |
| CTCCAGTCACATTTCCAGCT+TGG | + | chr3.2:57726704-57726723 | None:intergenic | 50.0% | |
| GATGAAATCAGCACGCTCTG+TGG | - | chr3.2:57726306-57726325 | MS.gene049539:intron | 50.0% | |
| TCACCAGTGACACAAAGAGG+AGG | - | chr3.2:57725631-57725650 | MS.gene049539:CDS | 50.0% | |
| ! | TGTCACTGGTGATGTAGGCA+AGG | + | chr3.2:57725623-57725642 | None:intergenic | 50.0% |
| !! | GAGTGCAAAAGGTGCTGTCA+AGG | - | chr3.2:57726397-57726416 | MS.gene049539:intron | 50.0% |
| AAATGTGACTGGAGGGGAGC+AGG | - | chr3.2:57726710-57726729 | MS.gene049539:intron | 55.0% | |
| AATGTGACTGGAGGGGAGCA+GGG | - | chr3.2:57726711-57726730 | MS.gene049539:intron | 55.0% | |
| GAAGGCCAAACCTCTGGTTG+AGG | + | chr3.2:57726369-57726388 | None:intergenic | 55.0% | |
| GGCCAATGCTGCCTTTGCAT+TGG | + | chr3.2:57726756-57726775 | None:intergenic | 55.0% | |
| TCCCCTCCTCTTTGTGTCAC+TGG | + | chr3.2:57725637-57725656 | None:intergenic | 55.0% | |
| ! | AGAGGTTTGGCCTTCGCCAT+GGG | - | chr3.2:57726374-57726393 | MS.gene049539:intron | 55.0% |
| ! | AGCACCTTTTGCACTCCCCA+TGG | + | chr3.2:57726393-57726412 | None:intergenic | 55.0% |
| ! | GCTCTAGTTCGGGCAATCTC+CGG | + | chr3.2:57726425-57726444 | None:intergenic | 55.0% |
| ! | TTCGCCATGGGGAGTGCAAA+AGG | - | chr3.2:57726386-57726405 | MS.gene049539:intron | 55.0% |
| ! | TTTTGCACTCCCCATGGCGA+AGG | + | chr3.2:57726387-57726406 | None:intergenic | 55.0% |
| !! | GCAAAGGCAGCATTGGCCAA+TGG | - | chr3.2:57726758-57726777 | MS.gene049539:intron | 55.0% |
| CATGGCGAAGGCCAAACCTC+TGG | + | chr3.2:57726375-57726394 | None:intergenic | 60.0% | |
| ! | CAGAGGTTTGGCCTTCGCCA+TGG | - | chr3.2:57726373-57726392 | MS.gene049539:intron | 60.0% |
| ! | GAGGTTTGGCCTTCGCCATG+GGG | - | chr3.2:57726375-57726394 | MS.gene049539:intron | 60.0% |
| GACTGGAGGGGAGCAGGGAA+TGG | - | chr3.2:57726716-57726735 | MS.gene049539:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 57725600 | 57726857 | 57725600 | ID=MS.gene049539 |
| chr3.2 | mRNA | 57725600 | 57726857 | 57725600 | ID=MS.gene049539.t1;Parent=MS.gene049539 |
| chr3.2 | exon | 57726779 | 57726857 | 57726779 | ID=MS.gene049539.t1.exon1;Parent=MS.gene049539.t1 |
| chr3.2 | CDS | 57726779 | 57726857 | 57726779 | ID=cds.MS.gene049539.t1;Parent=MS.gene049539.t1 |
| chr3.2 | exon | 57725600 | 57726168 | 57725600 | ID=MS.gene049539.t1.exon2;Parent=MS.gene049539.t1 |
| chr3.2 | CDS | 57725600 | 57726168 | 57725600 | ID=cds.MS.gene049539.t1;Parent=MS.gene049539.t1 |
| Gene Sequence |
| Protein sequence |
