Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41510.t1 | XP_013460436.1 | 92.8 | 222 | 9 | 2 | 1 | 216 | 1 | 221 | 6.90E-112 | 413.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41510.t1 | Q9FJK3 | 57.1 | 154 | 66 | 0 | 1 | 154 | 1 | 154 | 5.3e-44 | 179.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41510.t1 | A0A072UXE2 | 92.8 | 222 | 9 | 2 | 1 | 216 | 1 | 221 | 5.0e-112 | 413.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene41510.t1 | TF | MADS-M-type |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049539 | MS.gene41510 | 0.917365 | 5.80E-86 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41510.t1 | MTR_3g466980 | 92.793 | 222 | 9 | 2 | 1 | 216 | 1 | 221 | 1.41e-151 | 419 |
| MS.gene41510.t1 | MTR_3g065100 | 54.202 | 238 | 86 | 5 | 1 | 216 | 1 | 237 | 5.89e-75 | 226 |
| MS.gene41510.t1 | MTR_8g036130 | 47.773 | 247 | 94 | 6 | 1 | 216 | 1 | 243 | 2.33e-63 | 197 |
| MS.gene41510.t1 | MTR_4g063790 | 55.491 | 173 | 72 | 3 | 1 | 171 | 1 | 170 | 3.72e-59 | 184 |
| MS.gene41510.t1 | MTR_3g467080 | 53.086 | 162 | 73 | 2 | 1 | 160 | 1 | 161 | 1.09e-55 | 174 |
| MS.gene41510.t1 | MTR_4g032620 | 50.641 | 156 | 76 | 1 | 1 | 155 | 1 | 156 | 3.72e-53 | 171 |
| MS.gene41510.t1 | MTR_4g031910 | 42.982 | 228 | 113 | 5 | 1 | 215 | 1 | 224 | 5.80e-51 | 165 |
| MS.gene41510.t1 | MTR_3g466830 | 47.712 | 153 | 80 | 0 | 3 | 155 | 2 | 154 | 1.36e-50 | 162 |
| MS.gene41510.t1 | MTR_4g032260 | 52.866 | 157 | 73 | 1 | 1 | 156 | 1 | 157 | 2.87e-49 | 158 |
| MS.gene41510.t1 | MTR_4g032290 | 53.548 | 155 | 71 | 1 | 1 | 154 | 1 | 155 | 1.56e-48 | 159 |
| MS.gene41510.t1 | MTR_2g016210 | 44.693 | 179 | 96 | 2 | 1 | 176 | 1 | 179 | 1.62e-47 | 156 |
| MS.gene41510.t1 | MTR_5g075380 | 43.125 | 160 | 91 | 0 | 1 | 160 | 1 | 160 | 6.87e-47 | 152 |
| MS.gene41510.t1 | MTR_2g035610 | 59.836 | 122 | 49 | 0 | 1 | 122 | 1 | 122 | 1.31e-46 | 150 |
| MS.gene41510.t1 | MTR_3g031240 | 48.387 | 155 | 79 | 1 | 1 | 154 | 1 | 155 | 2.16e-45 | 149 |
| MS.gene41510.t1 | MTR_3g031100 | 41.848 | 184 | 104 | 2 | 1 | 181 | 1 | 184 | 1.36e-44 | 149 |
| MS.gene41510.t1 | MTR_5g047580 | 45.455 | 154 | 83 | 1 | 1 | 154 | 1 | 153 | 6.23e-42 | 139 |
| MS.gene41510.t1 | MTR_3g465410 | 49.306 | 144 | 70 | 2 | 29 | 171 | 1 | 142 | 8.23e-41 | 136 |
| MS.gene41510.t1 | MTR_3g466890 | 39.241 | 158 | 96 | 0 | 3 | 160 | 2 | 159 | 7.42e-39 | 132 |
| MS.gene41510.t1 | MTR_2g035580 | 44.937 | 158 | 87 | 0 | 1 | 158 | 1 | 158 | 6.90e-37 | 127 |
| MS.gene41510.t1 | MTR_7g011950 | 47.059 | 153 | 80 | 1 | 1 | 153 | 1 | 152 | 1.18e-35 | 123 |
| MS.gene41510.t1 | MTR_1g090697 | 37.662 | 154 | 95 | 1 | 1 | 154 | 1 | 153 | 1.68e-34 | 120 |
| MS.gene41510.t1 | MTR_1g084950 | 45.455 | 154 | 83 | 1 | 1 | 154 | 1 | 153 | 3.01e-34 | 120 |
| MS.gene41510.t1 | MTR_4g028720 | 45.752 | 153 | 82 | 1 | 1 | 153 | 1 | 152 | 5.57e-34 | 119 |
| MS.gene41510.t1 | MTR_1g077390 | 42.484 | 153 | 87 | 1 | 1 | 153 | 1 | 152 | 9.32e-34 | 119 |
| MS.gene41510.t1 | MTR_1g090783 | 38.158 | 152 | 93 | 1 | 3 | 154 | 2 | 152 | 2.78e-33 | 117 |
| MS.gene41510.t1 | MTR_3g466900 | 41.129 | 124 | 73 | 0 | 32 | 155 | 2 | 125 | 1.20e-32 | 115 |
| MS.gene41510.t1 | MTR_1g077320 | 43.791 | 153 | 85 | 1 | 1 | 153 | 1 | 152 | 3.73e-32 | 114 |
| MS.gene41510.t1 | MTR_3g466930 | 40.458 | 131 | 78 | 0 | 32 | 162 | 2 | 132 | 9.40e-32 | 112 |
| MS.gene41510.t1 | MTR_1g090710 | 36.129 | 155 | 97 | 2 | 1 | 154 | 1 | 154 | 4.98e-30 | 109 |
| MS.gene41510.t1 | MTR_1g077300 | 43.791 | 153 | 83 | 2 | 1 | 153 | 1 | 150 | 6.63e-29 | 106 |
| MS.gene41510.t1 | MTR_5g047560 | 36.364 | 154 | 81 | 2 | 1 | 154 | 1 | 137 | 2.21e-24 | 94.0 |
| MS.gene41510.t1 | MTR_4g019670 | 34.146 | 164 | 104 | 2 | 1 | 161 | 1 | 163 | 1.41e-23 | 98.2 |
| MS.gene41510.t1 | MTR_7g055800 | 42.857 | 119 | 40 | 2 | 1 | 119 | 1 | 91 | 1.56e-22 | 87.8 |
| MS.gene41510.t1 | MTR_4g028800 | 54.167 | 72 | 31 | 1 | 1 | 72 | 1 | 70 | 3.05e-22 | 86.7 |
| MS.gene41510.t1 | MTR_7g106510 | 31.098 | 164 | 109 | 2 | 1 | 161 | 1 | 163 | 3.41e-22 | 94.4 |
| MS.gene41510.t1 | MTR_4g084780 | 75.000 | 52 | 13 | 0 | 74 | 125 | 1 | 52 | 2.02e-20 | 84.3 |
| MS.gene41510.t1 | MTR_3g093900 | 28.947 | 152 | 108 | 0 | 3 | 154 | 6 | 157 | 5.57e-20 | 87.8 |
| MS.gene41510.t1 | MTR_7g055790 | 43.243 | 111 | 45 | 1 | 1 | 111 | 59 | 151 | 1.98e-19 | 81.6 |
| MS.gene41510.t1 | MTR_7g055940 | 41.905 | 105 | 33 | 2 | 1 | 105 | 1 | 77 | 8.64e-18 | 75.1 |
| MS.gene41510.t1 | MTR_6g018920 | 25.786 | 159 | 104 | 5 | 1 | 153 | 1 | 151 | 1.70e-15 | 74.3 |
| MS.gene41510.t1 | MTR_2g035590 | 48.193 | 83 | 42 | 1 | 74 | 155 | 1 | 83 | 3.62e-15 | 68.9 |
| MS.gene41510.t1 | MTR_1g114730 | 28.369 | 141 | 87 | 5 | 1 | 135 | 1 | 133 | 1.25e-14 | 72.0 |
| MS.gene41510.t1 | MTR_6g005440 | 25.439 | 228 | 137 | 9 | 1 | 216 | 1 | 207 | 2.95e-13 | 67.8 |
| MS.gene41510.t1 | MTR_4g045977 | 28.676 | 136 | 91 | 4 | 1 | 131 | 1 | 135 | 3.86e-13 | 67.8 |
| MS.gene41510.t1 | MTR_4g107170 | 30.147 | 136 | 89 | 4 | 1 | 131 | 1 | 135 | 1.47e-12 | 65.1 |
| MS.gene41510.t1 | MTR_6g005450 | 29.204 | 113 | 73 | 3 | 1 | 107 | 1 | 112 | 1.58e-12 | 65.9 |
| MS.gene41510.t1 | MTR_4g109830 | 29.586 | 169 | 101 | 4 | 1 | 165 | 1 | 155 | 7.22e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41510.t1 | AT5G48670 | 57.143 | 154 | 66 | 0 | 1 | 154 | 1 | 154 | 7.03e-54 | 175 |
| MS.gene41510.t1 | AT3G05860 | 39.604 | 202 | 111 | 4 | 1 | 193 | 1 | 200 | 1.17e-39 | 135 |
| MS.gene41510.t1 | AT3G05860 | 43.636 | 165 | 85 | 3 | 1 | 159 | 1 | 163 | 5.42e-39 | 135 |
| MS.gene41510.t1 | AT3G05860 | 43.636 | 165 | 85 | 3 | 1 | 159 | 1 | 163 | 9.07e-39 | 134 |
| MS.gene41510.t1 | AT1G65300 | 40.789 | 152 | 90 | 0 | 3 | 154 | 2 | 153 | 1.11e-37 | 132 |
| MS.gene41510.t1 | AT5G26650 | 35.545 | 211 | 126 | 4 | 4 | 204 | 2 | 212 | 4.93e-36 | 130 |
| MS.gene41510.t1 | AT5G27810 | 60.215 | 93 | 37 | 0 | 29 | 121 | 1 | 93 | 1.90e-35 | 122 |
| MS.gene41510.t1 | AT1G65330 | 39.474 | 152 | 92 | 0 | 3 | 154 | 2 | 153 | 5.88e-35 | 125 |
| MS.gene41510.t1 | AT1G31630 | 38.816 | 152 | 90 | 3 | 3 | 153 | 2 | 151 | 5.61e-34 | 124 |
| MS.gene41510.t1 | AT5G27960 | 34.123 | 211 | 129 | 4 | 4 | 204 | 2 | 212 | 9.51e-34 | 123 |
| MS.gene41510.t1 | AT1G31640 | 40.000 | 150 | 89 | 1 | 3 | 152 | 2 | 150 | 4.85e-33 | 124 |
| MS.gene41510.t1 | AT5G26630 | 40.909 | 154 | 91 | 0 | 1 | 154 | 1 | 154 | 7.63e-33 | 118 |
| MS.gene41510.t1 | AT2G28700 | 36.667 | 150 | 93 | 2 | 1 | 149 | 1 | 149 | 1.37e-28 | 109 |
| MS.gene41510.t1 | AT1G22590 | 36.025 | 161 | 94 | 2 | 1 | 158 | 1 | 155 | 4.44e-26 | 99.4 |
| MS.gene41510.t1 | AT5G26580 | 33.117 | 154 | 89 | 1 | 1 | 154 | 1 | 140 | 6.74e-23 | 94.7 |
| MS.gene41510.t1 | AT5G06500 | 30.337 | 178 | 119 | 3 | 1 | 177 | 1 | 174 | 8.87e-23 | 92.8 |
| MS.gene41510.t1 | AT2G40210 | 42.188 | 128 | 74 | 0 | 1 | 128 | 1 | 128 | 2.16e-22 | 94.0 |
| MS.gene41510.t1 | AT2G15660 | 29.268 | 123 | 80 | 2 | 38 | 157 | 31 | 149 | 3.24e-12 | 64.3 |
| MS.gene41510.t1 | AT5G55690 | 24.651 | 215 | 130 | 5 | 1 | 206 | 1 | 192 | 5.25e-12 | 63.9 |
| MS.gene41510.t1 | AT5G55690 | 24.651 | 215 | 130 | 5 | 1 | 206 | 1 | 192 | 5.25e-12 | 63.9 |
Find 53 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTGTGCCACATGGTTTC+TGG | 0.169034 | 3.1:-51353774 | MS.gene41510:CDS |
| TGGAGGAGGGGAGCAGGGTT+TGG | 0.323511 | 3.1:-51353887 | MS.gene41510:CDS |
| CTCCAGTCACATTTCCAGCT+TGG | 0.354490 | 3.1:+51353905 | None:intergenic |
| TCCCCTCCTCTTTGTGTCAC+TGG | 0.360448 | 3.1:+51355031 | None:intergenic |
| TGTGACTGGAGGAGGGGAGC+AGG | 0.417937 | 3.1:-51353893 | MS.gene41510:CDS |
| AACAAAGGAATGACAACAAA+AGG | 0.420798 | 3.1:-51354089 | MS.gene41510:CDS |
| GATGTGTTACCATTTGAAAA+TGG | 0.433134 | 3.1:-51353799 | MS.gene41510:CDS |
| GGCCAATGCTGCCTTTGCAT+TGG | 0.439467 | 3.1:+51353850 | None:intergenic |
| ACGATCCTCAACCAGAGGTT+TGG | 0.446002 | 3.1:-51354245 | MS.gene41510:CDS |
| GCTGGAAATGTGACTGGAGG+AGG | 0.447260 | 3.1:-51353901 | MS.gene41510:CDS |
| AGAGGTTTGGCCTTCGCCAT+GGG | 0.456027 | 3.1:-51354232 | MS.gene41510:CDS |
| TTCGCCATGGGGAGTGCAAA+AGG | 0.457021 | 3.1:-51354220 | MS.gene41510:CDS |
| CACATCACCAATGTTGTTGT+TGG | 0.473556 | 3.1:+51353816 | None:intergenic |
| GCTCTAGTTCGGGCAATCTC+CGG | 0.474104 | 3.1:+51354184 | None:intergenic |
| ATCCAATGCAAAGGCAGCAT+TGG | 0.475495 | 3.1:-51353852 | MS.gene41510:CDS |
| CATGGCGAAGGCCAAACCTC+TGG | 0.486204 | 3.1:+51354234 | None:intergenic |
| CGATCAATCTCAAGCTGAAG+AGG | 0.489282 | 3.1:-51353938 | MS.gene41510:CDS |
| CAGAGGTTTGGCCTTCGCCA+TGG | 0.503800 | 3.1:-51354233 | MS.gene41510:CDS |
| AAAAGGTGCTGTCAAGGTTC+CGG | 0.507965 | 3.1:-51354203 | MS.gene41510:CDS |
| CTTTGTGTCACTGGTGATGT+AGG | 0.508282 | 3.1:+51355040 | None:intergenic |
| AAGAGAGTTTCTTGAAGCAA+AGG | 0.517056 | 3.1:-51354140 | MS.gene41510:CDS |
| ATGTTTCAATGCCTTAATGC+TGG | 0.536723 | 3.1:-51354048 | MS.gene41510:CDS |
| CGCTGCCATGACTAGGAAGA+AGG | 0.539960 | 3.1:-51355072 | None:intergenic |
| TTCTCAACGCTGCCATGACT+AGG | 0.541469 | 3.1:-51355079 | None:intergenic |
| GATTTCACCAACAACAACAT+TGG | 0.549412 | 3.1:-51353823 | MS.gene41510:CDS |
| GTGACTGGAGGAGGGGAGCA+GGG | 0.551016 | 3.1:-51353892 | MS.gene41510:CDS |
| ATGAAATCAGCACGCTCTGT+GGG | 0.552209 | 3.1:-51354299 | MS.gene41510:CDS |
| AACCAAGCTGGAAATGTGAC+TGG | 0.555977 | 3.1:-51353907 | MS.gene41510:CDS |
| AGAACTTGAAACAGATCGAT+AGG | 0.558346 | 3.1:-51353966 | MS.gene41510:CDS |
| GAGTGCAAAAGGTGCTGTCA+AGG | 0.560319 | 3.1:-51354209 | MS.gene41510:CDS |
| GAGGTTGTTCAAAACCAAGC+TGG | 0.560495 | 3.1:-51353919 | MS.gene41510:CDS |
| GCTCACCTTCTTCCTAGTCA+TGG | 0.576647 | 3.1:+51355067 | None:intergenic |
| CTGGAAATGTGACTGGAGGA+GGG | 0.581921 | 3.1:-51353900 | MS.gene41510:CDS |
| CACCAGTGACACAAAGAGGA+GGG | 0.584600 | 3.1:-51355033 | MS.gene41510:CDS |
| GAAGGCCAAACCTCTGGTTG+AGG | 0.594220 | 3.1:+51354240 | None:intergenic |
| GCAAAGGCAGCATTGGCCAA+TGG | 0.595451 | 3.1:-51353845 | MS.gene41510:CDS |
| TTGTTGTTGGTGAAATCCAT+TGG | 0.595560 | 3.1:+51353829 | None:intergenic |
| AAGAACAGCTGAAGAAACAA+AGG | 0.602104 | 3.1:-51354104 | MS.gene41510:CDS |
| AAGGAATGACAACAAAAGGA+AGG | 0.606288 | 3.1:-51354085 | MS.gene41510:CDS |
| TGTCACTGGTGATGTAGGCA+AGG | 0.608234 | 3.1:+51355045 | None:intergenic |
| GAGGTTTGGCCTTCGCCATG+GGG | 0.626589 | 3.1:-51354231 | MS.gene41510:CDS |
| TGGAAATGTGACTGGAGGAG+GGG | 0.628019 | 3.1:-51353899 | MS.gene41510:CDS |
| ACCAGTGACACAAAGAGGAG+GGG | 0.628101 | 3.1:-51355032 | MS.gene41510:CDS |
| ACATCACCAGTGACACAAAG+AGG | 0.631331 | 3.1:-51355037 | MS.gene41510:CDS |
| ATGATCTCAATGATATCTCA+TGG | 0.651968 | 3.1:-51353999 | MS.gene41510:CDS |
| ACATTGCTGATCCAATGCAA+AGG | 0.652826 | 3.1:-51353861 | MS.gene41510:CDS |
| TGAGATCATCCATGCCAACA+TGG | 0.658598 | 3.1:+51354013 | None:intergenic |
| AATGGTAACATTGTGCCACA+TGG | 0.661986 | 3.1:-51353781 | MS.gene41510:CDS |
| TCAAAACGATCCTCAACCAG+AGG | 0.673462 | 3.1:-51354250 | MS.gene41510:CDS |
| GATGAAATCAGCACGCTCTG+TGG | 0.675321 | 3.1:-51354300 | MS.gene41510:CDS |
| TCACCAGTGACACAAAGAGG+AGG | 0.677630 | 3.1:-51355034 | MS.gene41510:CDS |
| CAAGCTGGAAATGTGACTGG+AGG | 0.691634 | 3.1:-51353904 | MS.gene41510:CDS |
| GATCAAGGCCAGAAACCATG+TGG | 0.733784 | 3.1:+51353766 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAAAATAAAATAAAAAT+TGG | + | chr3.1:51354261-51354280 | None:intergenic | 0.0% |
| !!! | TTTAAAATAAAATAAAAATT+GGG | + | chr3.1:51354260-51354279 | None:intergenic | 0.0% |
| !!! | TAGTTTTTATCATTTTTCAA+TGG | + | chr3.1:51353964-51353983 | None:intergenic | 15.0% |
| !!! | TGAAATTATTTTTATCTCAT+TGG | - | chr3.1:51354329-51354348 | MS.gene41510:intron | 15.0% |
| !! | ACATTCAAGAAAAGAAAAAA+TGG | - | chr3.1:51353825-51353844 | MS.gene41510:CDS | 20.0% |
| ! | AAATCTCTCACTTAATTTAG+TGG | + | chr3.1:51354209-51354228 | None:intergenic | 25.0% |
| ! | AATGATTGAAACAACAAAGT+AGG | + | chr3.1:51354465-51354484 | None:intergenic | 25.0% |
| ! | AATGGTAATTACAACATGTA+TGG | + | chr3.1:51353946-51353965 | None:intergenic | 25.0% |
| ! | AGATCGATAAATTGAATCAA+TGG | - | chr3.1:51354040-51354059 | MS.gene41510:CDS | 25.0% |
| ! | ATCGATAAATTGAATCAATG+GGG | - | chr3.1:51354042-51354061 | MS.gene41510:CDS | 25.0% |
| ! | ATGCAAGATTGATATATACA+TGG | + | chr3.1:51353883-51353902 | None:intergenic | 25.0% |
| ! | GATCGATAAATTGAATCAAT+GGG | - | chr3.1:51354041-51354060 | MS.gene41510:CDS | 25.0% |
| ! | TTAGTGGCAAACAAATTTAT+AGG | + | chr3.1:51354193-51354212 | None:intergenic | 25.0% |
| !! | ACAATGTTACCATTTTCAAA+TGG | + | chr3.1:51355046-51355065 | None:intergenic | 25.0% |
| !!! | AGAGATTTCATTTTGTTGTT+TGG | - | chr3.1:51354221-51354240 | MS.gene41510:CDS | 25.0% |
| !!! | CTTGTTGTATTTTTTATACC+AGG | - | chr3.1:51354494-51354513 | MS.gene41510:intron | 25.0% |
| !!! | TTTTTATCTCATTGGTGTTT+CGG | - | chr3.1:51354337-51354356 | MS.gene41510:intron | 25.0% |
| AACAAAGGAATGACAACAAA+AGG | - | chr3.1:51354744-51354763 | MS.gene41510:intron | 30.0% | |
| ATGATCTCAATGATATCTCA+TGG | - | chr3.1:51354834-51354853 | MS.gene41510:intron | 30.0% | |
| ATTTAACATGTTTGTCCCTT+TGG | - | chr3.1:51354283-51354302 | MS.gene41510:CDS | 30.0% | |
| GATGTGTTACCATTTGAAAA+TGG | - | chr3.1:51355034-51355053 | MS.gene41510:CDS | 30.0% | |
| ! | AACTTCAGTTTACGATGTTT+TGG | + | chr3.1:51354097-51354116 | None:intergenic | 30.0% |
| ! | ACTTCAGTTTACGATGTTTT+GGG | + | chr3.1:51354096-51354115 | None:intergenic | 30.0% |
| !! | TTTTATCTCATTGGTGTTTC+GGG | - | chr3.1:51354338-51354357 | MS.gene41510:intron | 30.0% |
| !!! | TTTCATTTTGTTGTTTGGCT+TGG | - | chr3.1:51354226-51354245 | MS.gene41510:CDS | 30.0% |
| !!! | TTTTTTGCTTTGCTCTAGTT+CGG | + | chr3.1:51354663-51354682 | None:intergenic | 30.0% |
| AAGAACAGCTGAAGAAACAA+AGG | - | chr3.1:51354729-51354748 | MS.gene41510:intron | 35.0% | |
| AAGAGAGTTTCTTGAAGCAA+AGG | - | chr3.1:51354693-51354712 | MS.gene41510:intron | 35.0% | |
| AAGGAATGACAACAAAAGGA+AGG | - | chr3.1:51354748-51354767 | MS.gene41510:intron | 35.0% | |
| AGAACTTGAAACAGATCGAT+AGG | - | chr3.1:51354867-51354886 | MS.gene41510:intron | 35.0% | |
| ATGTTTCAATGCCTTAATGC+TGG | - | chr3.1:51354785-51354804 | MS.gene41510:intron | 35.0% | |
| CAAAAATCTGACCAGCATTA+AGG | + | chr3.1:51354799-51354818 | None:intergenic | 35.0% | |
| GATTTCACCAACAACAACAT+TGG | - | chr3.1:51355010-51355029 | MS.gene41510:CDS | 35.0% | |
| TCAATCTTCTTGATCAAACC+TGG | + | chr3.1:51354515-51354534 | None:intergenic | 35.0% | |
| ! | TTGTTGTTGGTGAAATCCAT+TGG | + | chr3.1:51355007-51355026 | None:intergenic | 35.0% |
| !! | TTTTTGCTTTGCTCTAGTTC+GGG | + | chr3.1:51354662-51354681 | None:intergenic | 35.0% |
| AATGGTAACATTGTGCCACA+TGG | - | chr3.1:51355052-51355071 | MS.gene41510:CDS | 40.0% | |
| ACATTGCTGATCCAATGCAA+AGG | - | chr3.1:51354972-51354991 | MS.gene41510:intron | 40.0% | |
| ATATGAGCACCTTTCACAAC+TGG | + | chr3.1:51354126-51354145 | None:intergenic | 40.0% | |
| CACACAGACTCTATTCCAAA+GGG | + | chr3.1:51354301-51354320 | None:intergenic | 40.0% | |
| CACATCACCAATGTTGTTGT+TGG | + | chr3.1:51355020-51355039 | None:intergenic | 40.0% | |
| GTTCAAATCCCAGTTGTGAA+AGG | - | chr3.1:51354114-51354133 | MS.gene41510:CDS | 40.0% | |
| TATGAGCACCTTTCACAACT+GGG | + | chr3.1:51354125-51354144 | None:intergenic | 40.0% | |
| TCACACAGACTCTATTCCAA+AGG | + | chr3.1:51354302-51354321 | None:intergenic | 40.0% | |
| ! | GATTTTTGACCATGTTGGCA+TGG | - | chr3.1:51354811-51354830 | MS.gene41510:intron | 40.0% |
| ! | GGTCAGATTTTTGACCATGT+TGG | - | chr3.1:51354806-51354825 | MS.gene41510:intron | 40.0% |
| ! | TCAGCTGTTCTTGAGCTTTT+TGG | + | chr3.1:51354721-51354740 | None:intergenic | 40.0% |
| AACCAAGCTGGAAATGTGAC+TGG | - | chr3.1:51354926-51354945 | MS.gene41510:intron | 45.0% | |
| ACATCACCAGTGACACAAAG+AGG | - | chr3.1:51353796-51353815 | MS.gene41510:CDS | 45.0% | |
| ACATTGTGCCACATGGTTTC+TGG | - | chr3.1:51355059-51355078 | MS.gene41510:CDS | 45.0% | |
| ATCCAATGCAAAGGCAGCAT+TGG | - | chr3.1:51354981-51355000 | MS.gene41510:intron | 45.0% | |
| ATGAAATCAGCACGCTCTGT+GGG | - | chr3.1:51354534-51354553 | MS.gene41510:intron | 45.0% | |
| CGATCAATCTCAAGCTGAAG+AGG | - | chr3.1:51354895-51354914 | MS.gene41510:intron | 45.0% | |
| GAGGTTGTTCAAAACCAAGC+TGG | - | chr3.1:51354914-51354933 | MS.gene41510:intron | 45.0% | |
| GGGAGTTGAGTCTAGCAAAA+TGG | - | chr3.1:51354062-51354081 | MS.gene41510:CDS | 45.0% | |
| TCAAAACGATCCTCAACCAG+AGG | - | chr3.1:51354583-51354602 | MS.gene41510:intron | 45.0% | |
| TGAGATCATCCATGCCAACA+TGG | + | chr3.1:51354823-51354842 | None:intergenic | 45.0% | |
| ! | CTTTGTGTCACTGGTGATGT+AGG | + | chr3.1:51353796-51353815 | None:intergenic | 45.0% |
| !! | AAAAGGTGCTGTCAAGGTTC+CGG | - | chr3.1:51354630-51354649 | MS.gene41510:intron | 45.0% |
| !! | TTAAAATAAAATAAAAATTG+GGG | + | chr3.1:51354259-51354278 | None:intergenic | 5.0% |
| !!! | TATTTAAGATAAATAAAAAT+TGG | + | chr3.1:51354441-51354460 | None:intergenic | 5.0% |
| ACCAGTGACACAAAGAGGAG+GGG | - | chr3.1:51353801-51353820 | MS.gene41510:CDS | 50.0% | |
| ACGATCCTCAACCAGAGGTT+TGG | - | chr3.1:51354588-51354607 | MS.gene41510:intron | 50.0% | |
| CAAGCTGGAAATGTGACTGG+AGG | - | chr3.1:51354929-51354948 | MS.gene41510:intron | 50.0% | |
| CACCAGTGACACAAAGAGGA+GGG | - | chr3.1:51353800-51353819 | MS.gene41510:CDS | 50.0% | |
| CTCCAGTCACATTTCCAGCT+TGG | + | chr3.1:51354931-51354950 | None:intergenic | 50.0% | |
| CTGGAAATGTGACTGGAGGA+GGG | - | chr3.1:51354933-51354952 | MS.gene41510:intron | 50.0% | |
| GATGAAATCAGCACGCTCTG+TGG | - | chr3.1:51354533-51354552 | MS.gene41510:intron | 50.0% | |
| TCACCAGTGACACAAAGAGG+AGG | - | chr3.1:51353799-51353818 | MS.gene41510:CDS | 50.0% | |
| TGGAAATGTGACTGGAGGAG+GGG | - | chr3.1:51354934-51354953 | MS.gene41510:intron | 50.0% | |
| ! | TGTCACTGGTGATGTAGGCA+AGG | + | chr3.1:51353791-51353810 | None:intergenic | 50.0% |
| !! | GAGTGCAAAAGGTGCTGTCA+AGG | - | chr3.1:51354624-51354643 | MS.gene41510:intron | 50.0% |
| GAAGGCCAAACCTCTGGTTG+AGG | + | chr3.1:51354596-51354615 | None:intergenic | 55.0% | |
| GCTGGAAATGTGACTGGAGG+AGG | - | chr3.1:51354932-51354951 | MS.gene41510:intron | 55.0% | |
| GGCCAATGCTGCCTTTGCAT+TGG | + | chr3.1:51354986-51355005 | None:intergenic | 55.0% | |
| TCCCCTCCTCTTTGTGTCAC+TGG | + | chr3.1:51353805-51353824 | None:intergenic | 55.0% | |
| ! | AGAGGTTTGGCCTTCGCCAT+GGG | - | chr3.1:51354601-51354620 | MS.gene41510:intron | 55.0% |
| ! | AGCACCTTTTGCACTCCCCA+TGG | + | chr3.1:51354620-51354639 | None:intergenic | 55.0% |
| ! | GCTCTAGTTCGGGCAATCTC+CGG | + | chr3.1:51354652-51354671 | None:intergenic | 55.0% |
| ! | TTCGCCATGGGGAGTGCAAA+AGG | - | chr3.1:51354613-51354632 | MS.gene41510:intron | 55.0% |
| ! | TTTTGCACTCCCCATGGCGA+AGG | + | chr3.1:51354614-51354633 | None:intergenic | 55.0% |
| !! | GCAAAGGCAGCATTGGCCAA+TGG | - | chr3.1:51354988-51355007 | MS.gene41510:intron | 55.0% |
| CATGGCGAAGGCCAAACCTC+TGG | + | chr3.1:51354602-51354621 | None:intergenic | 60.0% | |
| ! | CAGAGGTTTGGCCTTCGCCA+TGG | - | chr3.1:51354600-51354619 | MS.gene41510:intron | 60.0% |
| ! | GAGGTTTGGCCTTCGCCATG+GGG | - | chr3.1:51354602-51354621 | MS.gene41510:intron | 60.0% |
| GTGACTGGAGGAGGGGAGCA+GGG | - | chr3.1:51354941-51354960 | MS.gene41510:intron | 65.0% | |
| TGGAGGAGGGGAGCAGGGTT+TGG | - | chr3.1:51354946-51354965 | MS.gene41510:intron | 65.0% | |
| TGTGACTGGAGGAGGGGAGC+AGG | - | chr3.1:51354940-51354959 | MS.gene41510:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 51353768 | 51355087 | 51353768 | ID=MS.gene41510 |
| chr3.1 | mRNA | 51353768 | 51355087 | 51353768 | ID=MS.gene41510.t1;Parent=MS.gene41510 |
| chr3.1 | exon | 51355009 | 51355087 | 51355009 | ID=MS.gene41510.t1.exon1;Parent=MS.gene41510.t1 |
| chr3.1 | CDS | 51355009 | 51355087 | 51355009 | ID=cds.MS.gene41510.t1;Parent=MS.gene41510.t1 |
| chr3.1 | exon | 51353768 | 51354339 | 51353768 | ID=MS.gene41510.t1.exon2;Parent=MS.gene41510.t1 |
| chr3.1 | CDS | 51353768 | 51354339 | 51353768 | ID=cds.MS.gene41510.t1;Parent=MS.gene41510.t1 |
| Gene Sequence |
| Protein sequence |
