Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049553.t1 | XP_013460453.1 | 87.6 | 259 | 32 | 0 | 1 | 259 | 1 | 259 | 3.60E-131 | 477.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049553.t1 | Q6J541 | 61.0 | 259 | 96 | 2 | 6 | 259 | 1 | 259 | 2.5e-88 | 326.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049553.t1 | A0A072UYH5 | 87.6 | 259 | 32 | 0 | 1 | 259 | 1 | 259 | 2.6e-131 | 477.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049553 | MS.gene38426 | 0.869705 | 2.53E-66 | -1.69E-46 |
| MS.gene049553 | MS.gene41482 | 0.883793 | 3.32E-71 | -1.69E-46 |
| MS.gene049553 | MS.gene41486 | 0.904542 | 1.10E-79 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049553.t1 | MTR_3g467200 | 87.308 | 260 | 33 | 0 | 1 | 260 | 1 | 260 | 5.76e-157 | 447 |
| MS.gene049553.t1 | MTR_3g467220 | 76.471 | 255 | 60 | 0 | 6 | 260 | 1 | 255 | 3.33e-144 | 414 |
| MS.gene049553.t1 | MTR_3g465300 | 73.554 | 242 | 63 | 1 | 20 | 260 | 16 | 257 | 7.80e-130 | 378 |
| MS.gene049553.t1 | MTR_3g467290 | 68.321 | 262 | 80 | 1 | 1 | 259 | 1 | 262 | 1.35e-129 | 378 |
| MS.gene049553.t1 | MTR_8g073960 | 56.680 | 247 | 104 | 1 | 17 | 260 | 11 | 257 | 5.75e-96 | 291 |
| MS.gene049553.t1 | MTR_8g073950 | 57.490 | 247 | 98 | 3 | 17 | 260 | 11 | 253 | 3.55e-94 | 286 |
| MS.gene049553.t1 | MTR_8g076390 | 56.680 | 247 | 104 | 1 | 17 | 260 | 11 | 257 | 2.27e-85 | 264 |
| MS.gene049553.t1 | MTR_8g076372 | 56.680 | 247 | 104 | 1 | 17 | 260 | 11 | 257 | 2.65e-85 | 264 |
| MS.gene049553.t1 | MTR_3g467250 | 66.923 | 130 | 37 | 2 | 80 | 206 | 2 | 128 | 2.08e-57 | 182 |
| MS.gene049553.t1 | MTR_5g019010 | 28.452 | 239 | 152 | 5 | 23 | 258 | 7 | 229 | 2.15e-24 | 102 |
| MS.gene049553.t1 | MTR_6g084770 | 31.646 | 237 | 142 | 6 | 27 | 260 | 14 | 233 | 7.14e-23 | 97.4 |
| MS.gene049553.t1 | MTR_3g058220 | 30.667 | 225 | 134 | 8 | 19 | 237 | 9 | 217 | 1.06e-22 | 97.1 |
| MS.gene049553.t1 | MTR_3g058060 | 27.869 | 244 | 153 | 5 | 18 | 256 | 4 | 229 | 2.66e-22 | 96.3 |
| MS.gene049553.t1 | MTR_1g035190 | 32.222 | 180 | 116 | 3 | 43 | 222 | 13 | 186 | 3.10e-22 | 95.5 |
| MS.gene049553.t1 | MTR_3g057970 | 31.863 | 204 | 119 | 6 | 22 | 220 | 6 | 194 | 3.89e-22 | 95.5 |
| MS.gene049553.t1 | MTR_3g057900 | 31.863 | 204 | 122 | 6 | 22 | 220 | 6 | 197 | 4.17e-22 | 95.5 |
| MS.gene049553.t1 | MTR_5g073250 | 28.571 | 217 | 149 | 4 | 23 | 239 | 12 | 222 | 6.81e-22 | 94.7 |
| MS.gene049553.t1 | MTR_5g095290 | 33.333 | 165 | 100 | 3 | 31 | 192 | 22 | 179 | 7.72e-22 | 94.7 |
| MS.gene049553.t1 | MTR_3g057910 | 28.837 | 215 | 131 | 4 | 45 | 256 | 33 | 228 | 1.11e-21 | 94.0 |
| MS.gene049553.t1 | MTR_7g087520 | 30.043 | 233 | 145 | 7 | 33 | 257 | 16 | 238 | 5.54e-21 | 92.0 |
| MS.gene049553.t1 | MTR_5g094840 | 28.972 | 214 | 137 | 6 | 9 | 220 | 5 | 205 | 5.86e-21 | 92.0 |
| MS.gene049553.t1 | MTR_8g091690 | 30.137 | 219 | 131 | 5 | 49 | 262 | 27 | 228 | 6.07e-21 | 92.0 |
| MS.gene049553.t1 | MTR_3g025260 | 29.208 | 202 | 138 | 2 | 59 | 260 | 41 | 237 | 8.50e-21 | 91.7 |
| MS.gene049553.t1 | MTR_8g466180 | 28.632 | 234 | 148 | 6 | 19 | 252 | 7 | 221 | 9.23e-21 | 91.7 |
| MS.gene049553.t1 | MTR_5g094540 | 31.395 | 172 | 112 | 4 | 22 | 192 | 11 | 177 | 1.06e-20 | 91.3 |
| MS.gene049553.t1 | MTR_6g462640 | 30.806 | 211 | 123 | 7 | 13 | 220 | 6 | 196 | 1.76e-20 | 90.5 |
| MS.gene049553.t1 | MTR_3g057800 | 30.409 | 171 | 108 | 4 | 49 | 216 | 35 | 197 | 2.61e-20 | 90.1 |
| MS.gene049553.t1 | MTR_0059s0170 | 31.579 | 171 | 100 | 4 | 15 | 177 | 1 | 162 | 4.03e-20 | 89.7 |
| MS.gene049553.t1 | MTR_1g442730 | 31.765 | 170 | 108 | 3 | 23 | 192 | 11 | 172 | 4.57e-20 | 89.4 |
| MS.gene049553.t1 | MTR_3g025230 | 28.713 | 202 | 139 | 2 | 59 | 260 | 41 | 237 | 5.96e-20 | 89.4 |
| MS.gene049553.t1 | MTR_3g058110 | 28.205 | 234 | 150 | 6 | 19 | 252 | 10 | 225 | 6.01e-20 | 89.0 |
| MS.gene049553.t1 | MTR_5g094550 | 28.033 | 239 | 149 | 6 | 22 | 256 | 11 | 230 | 6.54e-20 | 89.0 |
| MS.gene049553.t1 | MTR_5g094520 | 31.667 | 240 | 144 | 9 | 19 | 257 | 42 | 262 | 6.70e-20 | 89.0 |
| MS.gene049553.t1 | MTR_0554s0020 | 28.713 | 202 | 128 | 6 | 22 | 220 | 10 | 198 | 8.74e-20 | 88.6 |
| MS.gene049553.t1 | MTR_3g057980 | 35.172 | 145 | 84 | 3 | 50 | 191 | 36 | 173 | 1.05e-19 | 88.6 |
| MS.gene049553.t1 | MTR_5g094660 | 29.108 | 213 | 135 | 6 | 50 | 261 | 38 | 235 | 1.45e-19 | 88.2 |
| MS.gene049553.t1 | MTR_6g039630 | 28.205 | 234 | 149 | 6 | 19 | 252 | 7 | 221 | 2.22e-19 | 85.5 |
| MS.gene049553.t1 | MTR_3g024520 | 28.218 | 202 | 140 | 2 | 59 | 260 | 41 | 237 | 2.28e-19 | 87.4 |
| MS.gene049553.t1 | MTR_5g073320 | 28.505 | 214 | 140 | 4 | 44 | 257 | 32 | 232 | 2.54e-19 | 87.4 |
| MS.gene049553.t1 | MTR_3g058390 | 30.460 | 174 | 105 | 4 | 13 | 183 | 6 | 166 | 3.22e-19 | 87.0 |
| MS.gene049553.t1 | MTR_3g057860 | 25.000 | 244 | 161 | 6 | 20 | 258 | 5 | 231 | 3.30e-19 | 87.0 |
| MS.gene049553.t1 | MTR_5g094560 | 27.686 | 242 | 148 | 6 | 22 | 257 | 11 | 231 | 4.32e-19 | 86.7 |
| MS.gene049553.t1 | MTR_3g058400 | 28.384 | 229 | 146 | 6 | 32 | 254 | 19 | 235 | 4.49e-19 | 86.7 |
| MS.gene049553.t1 | MTR_5g095260 | 32.500 | 160 | 98 | 3 | 35 | 191 | 26 | 178 | 9.25e-19 | 85.5 |
| MS.gene049553.t1 | MTR_4g133750 | 30.286 | 175 | 108 | 4 | 6 | 177 | 1 | 164 | 1.89e-18 | 84.7 |
| MS.gene049553.t1 | MTR_3g058250 | 28.856 | 201 | 125 | 5 | 12 | 209 | 5 | 190 | 1.91e-18 | 84.7 |
| MS.gene049553.t1 | MTR_3g058000 | 27.143 | 210 | 132 | 4 | 50 | 256 | 38 | 229 | 2.37e-18 | 84.3 |
| MS.gene049553.t1 | MTR_5g070710 | 30.159 | 252 | 139 | 8 | 20 | 262 | 11 | 234 | 2.51e-18 | 84.3 |
| MS.gene049553.t1 | MTR_5g018980 | 32.639 | 144 | 95 | 1 | 49 | 192 | 33 | 174 | 3.02e-18 | 84.3 |
| MS.gene049553.t1 | MTR_1g035140 | 27.179 | 195 | 134 | 3 | 22 | 216 | 13 | 199 | 3.13e-18 | 84.0 |
| MS.gene049553.t1 | MTR_6g035100 | 27.778 | 180 | 114 | 4 | 6 | 182 | 1 | 167 | 3.28e-18 | 84.0 |
| MS.gene049553.t1 | MTR_2g010530 | 32.877 | 146 | 88 | 3 | 50 | 192 | 34 | 172 | 3.75e-18 | 84.0 |
| MS.gene049553.t1 | MTR_5g094570 | 29.240 | 171 | 117 | 3 | 22 | 192 | 11 | 177 | 4.96e-18 | 83.6 |
| MS.gene049553.t1 | MTR_2g065360 | 26.941 | 219 | 140 | 4 | 49 | 262 | 6 | 209 | 6.44e-18 | 83.2 |
| MS.gene049553.t1 | MTR_6g034965 | 27.222 | 180 | 115 | 4 | 6 | 182 | 1 | 167 | 7.71e-18 | 82.8 |
| MS.gene049553.t1 | MTR_1g097240 | 25.726 | 241 | 161 | 5 | 23 | 260 | 3 | 228 | 1.34e-17 | 82.4 |
| MS.gene049553.t1 | MTR_0171s0010 | 32.558 | 172 | 113 | 3 | 23 | 192 | 6 | 176 | 1.67e-17 | 82.0 |
| MS.gene049553.t1 | MTR_4g048580 | 30.159 | 189 | 123 | 6 | 23 | 208 | 12 | 194 | 1.78e-17 | 82.0 |
| MS.gene049553.t1 | MTR_3g058240 | 31.333 | 150 | 93 | 3 | 50 | 196 | 1 | 143 | 1.78e-17 | 82.0 |
| MS.gene049553.t1 | MTR_5g016410 | 25.911 | 247 | 168 | 6 | 19 | 260 | 3 | 239 | 2.02e-17 | 81.6 |
| MS.gene049553.t1 | MTR_5g070850 | 26.364 | 220 | 136 | 5 | 49 | 262 | 36 | 235 | 2.16e-17 | 81.6 |
| MS.gene049553.t1 | MTR_4g104610 | 26.383 | 235 | 153 | 6 | 22 | 253 | 2 | 219 | 3.13e-17 | 81.3 |
| MS.gene049553.t1 | MTR_7g056103 | 26.829 | 246 | 155 | 7 | 20 | 261 | 11 | 235 | 3.35e-17 | 81.3 |
| MS.gene049553.t1 | MTR_7g075390 | 25.523 | 239 | 163 | 4 | 22 | 257 | 7 | 233 | 6.97e-17 | 80.1 |
| MS.gene049553.t1 | MTR_3g058210 | 28.436 | 211 | 133 | 6 | 50 | 254 | 37 | 235 | 7.49e-17 | 80.1 |
| MS.gene049553.t1 | MTR_3g076560 | 28.112 | 249 | 143 | 8 | 19 | 258 | 28 | 249 | 7.75e-17 | 80.1 |
| MS.gene049553.t1 | MTR_6g035115 | 31.507 | 146 | 90 | 3 | 50 | 192 | 37 | 175 | 8.96e-17 | 79.7 |
| MS.gene049553.t1 | MTR_8g020940 | 27.397 | 219 | 145 | 6 | 46 | 261 | 32 | 239 | 1.27e-16 | 79.3 |
| MS.gene049553.t1 | MTR_4g102310 | 28.070 | 228 | 154 | 4 | 33 | 260 | 22 | 239 | 1.32e-16 | 79.3 |
| MS.gene049553.t1 | MTR_8g076290 | 28.302 | 212 | 126 | 8 | 51 | 257 | 36 | 226 | 2.39e-16 | 78.6 |
| MS.gene049553.t1 | MTR_7g092620 | 27.551 | 196 | 130 | 4 | 18 | 210 | 5 | 191 | 2.46e-16 | 78.6 |
| MS.gene049553.t1 | MTR_4g104550 | 29.293 | 198 | 130 | 3 | 44 | 237 | 21 | 212 | 2.50e-16 | 78.6 |
| MS.gene049553.t1 | MTR_5g073240 | 32.609 | 138 | 88 | 2 | 24 | 161 | 60 | 192 | 3.52e-16 | 75.1 |
| MS.gene049553.t1 | MTR_5g018990 | 29.545 | 132 | 87 | 2 | 49 | 177 | 34 | 162 | 3.84e-16 | 78.2 |
| MS.gene049553.t1 | MTR_1g103680 | 25.417 | 240 | 160 | 6 | 23 | 257 | 7 | 232 | 4.43e-16 | 77.8 |
| MS.gene049553.t1 | MTR_5g094535 | 31.387 | 137 | 92 | 2 | 27 | 163 | 16 | 150 | 8.95e-16 | 74.7 |
| MS.gene049553.t1 | MTR_8g020950 | 27.982 | 218 | 143 | 6 | 47 | 261 | 35 | 241 | 1.11e-15 | 76.6 |
| MS.gene049553.t1 | MTR_5g070700 | 28.636 | 220 | 131 | 5 | 49 | 262 | 36 | 235 | 1.17e-15 | 76.6 |
| MS.gene049553.t1 | MTR_5g007460 | 27.982 | 218 | 142 | 5 | 44 | 257 | 3 | 209 | 1.42e-15 | 76.3 |
| MS.gene049553.t1 | MTR_5g070690 | 33.133 | 166 | 97 | 5 | 17 | 177 | 3 | 159 | 2.46e-15 | 75.5 |
| MS.gene049553.t1 | MTR_5g070800 | 33.133 | 166 | 97 | 5 | 17 | 177 | 3 | 159 | 2.46e-15 | 75.5 |
| MS.gene049553.t1 | MTR_5g070980 | 29.302 | 215 | 122 | 7 | 49 | 255 | 36 | 228 | 2.65e-15 | 73.6 |
| MS.gene049553.t1 | MTR_8g020960 | 27.523 | 218 | 144 | 6 | 47 | 261 | 34 | 240 | 2.79e-15 | 75.5 |
| MS.gene049553.t1 | MTR_8g104080 | 25.600 | 250 | 154 | 7 | 19 | 259 | 5 | 231 | 3.03e-15 | 73.9 |
| MS.gene049553.t1 | MTR_4g095050 | 28.141 | 199 | 135 | 4 | 23 | 216 | 4 | 199 | 3.29e-15 | 75.1 |
| MS.gene049553.t1 | MTR_4g109470 | 27.536 | 207 | 135 | 6 | 59 | 260 | 40 | 236 | 3.48e-15 | 75.1 |
| MS.gene049553.t1 | MTR_5g018480 | 25.664 | 226 | 153 | 6 | 42 | 260 | 32 | 249 | 3.89e-15 | 74.3 |
| MS.gene049553.t1 | MTR_5g470730 | 29.493 | 217 | 133 | 7 | 49 | 262 | 36 | 235 | 4.30e-15 | 74.7 |
| MS.gene049553.t1 | MTR_5g070920 | 28.685 | 251 | 146 | 7 | 19 | 262 | 11 | 235 | 5.56e-15 | 74.7 |
| MS.gene049553.t1 | MTR_8g046240 | 25.101 | 247 | 171 | 5 | 18 | 260 | 5 | 241 | 5.77e-15 | 74.7 |
| MS.gene049553.t1 | MTR_4g471620 | 34.146 | 123 | 74 | 2 | 51 | 171 | 38 | 155 | 1.02e-14 | 71.2 |
| MS.gene049553.t1 | MTR_4g094772 | 25.352 | 213 | 142 | 6 | 50 | 260 | 33 | 230 | 1.09e-14 | 73.6 |
| MS.gene049553.t1 | MTR_7g075610 | 25.000 | 220 | 151 | 3 | 41 | 257 | 25 | 233 | 1.20e-14 | 73.6 |
| MS.gene049553.t1 | MTR_8g046210 | 24.800 | 250 | 168 | 5 | 18 | 260 | 5 | 241 | 1.42e-14 | 73.6 |
| MS.gene049553.t1 | MTR_1g023730 | 32.308 | 130 | 80 | 2 | 51 | 177 | 33 | 157 | 1.79e-14 | 73.2 |
| MS.gene049553.t1 | MTR_5g072980 | 24.510 | 204 | 141 | 4 | 50 | 251 | 33 | 225 | 1.94e-14 | 72.8 |
| MS.gene049553.t1 | MTR_5g072930 | 24.510 | 204 | 141 | 4 | 50 | 251 | 33 | 225 | 1.94e-14 | 72.8 |
| MS.gene049553.t1 | MTR_1g023700 | 28.037 | 214 | 140 | 4 | 51 | 257 | 34 | 240 | 2.14e-14 | 72.8 |
| MS.gene049553.t1 | MTR_1g023720 | 31.538 | 130 | 81 | 2 | 51 | 177 | 33 | 157 | 3.74e-14 | 72.0 |
| MS.gene049553.t1 | MTR_4g071710 | 34.146 | 123 | 74 | 2 | 51 | 171 | 38 | 155 | 3.86e-14 | 72.0 |
| MS.gene049553.t1 | MTR_5g016440 | 24.898 | 245 | 170 | 7 | 18 | 261 | 3 | 234 | 4.67e-14 | 72.0 |
| MS.gene049553.t1 | MTR_5g075450 | 24.645 | 211 | 144 | 5 | 49 | 254 | 32 | 232 | 4.82e-14 | 71.6 |
| MS.gene049553.t1 | MTR_5g007450 | 24.380 | 242 | 160 | 4 | 19 | 257 | 11 | 232 | 5.21e-14 | 71.6 |
| MS.gene049553.t1 | MTR_5g007550 | 24.380 | 242 | 160 | 4 | 19 | 257 | 11 | 232 | 5.40e-14 | 71.6 |
| MS.gene049553.t1 | MTR_3g436540 | 23.482 | 247 | 166 | 6 | 17 | 260 | 15 | 241 | 6.50e-14 | 71.2 |
| MS.gene049553.t1 | MTR_4g104660 | 23.810 | 231 | 167 | 3 | 23 | 250 | 19 | 243 | 7.14e-14 | 71.2 |
| MS.gene049553.t1 | MTR_4g089055 | 27.600 | 250 | 156 | 6 | 10 | 256 | 15 | 242 | 7.52e-14 | 71.2 |
| MS.gene049553.t1 | MTR_7g012330 | 25.806 | 217 | 148 | 5 | 43 | 257 | 27 | 232 | 8.54e-14 | 71.2 |
| MS.gene049553.t1 | MTR_5g021390 | 26.512 | 215 | 134 | 7 | 47 | 257 | 41 | 235 | 9.94e-14 | 70.9 |
| MS.gene049553.t1 | MTR_7g012860 | 25.359 | 209 | 145 | 4 | 50 | 257 | 33 | 231 | 1.08e-13 | 70.9 |
| MS.gene049553.t1 | MTR_0287s0060 | 25.359 | 209 | 145 | 4 | 50 | 257 | 33 | 231 | 1.08e-13 | 70.9 |
| MS.gene049553.t1 | MTR_3g058380 | 31.677 | 161 | 100 | 4 | 97 | 254 | 1 | 154 | 1.84e-13 | 70.1 |
| MS.gene049553.t1 | MTR_5g073230 | 34.188 | 117 | 71 | 3 | 44 | 158 | 35 | 147 | 2.55e-13 | 69.7 |
| MS.gene049553.t1 | MTR_1g103670 | 24.528 | 212 | 144 | 5 | 49 | 257 | 33 | 231 | 3.63e-13 | 69.3 |
| MS.gene049553.t1 | MTR_6g008500 | 26.667 | 240 | 142 | 6 | 42 | 258 | 34 | 262 | 3.71e-13 | 69.3 |
| MS.gene049553.t1 | MTR_4g094775 | 26.923 | 234 | 163 | 6 | 28 | 259 | 11 | 238 | 4.33e-13 | 68.9 |
| MS.gene049553.t1 | MTR_0171s0020 | 29.310 | 174 | 118 | 4 | 22 | 192 | 5 | 176 | 5.55e-13 | 68.6 |
| MS.gene049553.t1 | MTR_2g450040 | 25.339 | 221 | 148 | 7 | 47 | 258 | 34 | 246 | 5.71e-13 | 68.6 |
| MS.gene049553.t1 | MTR_3g076550 | 25.000 | 240 | 118 | 7 | 24 | 258 | 52 | 234 | 6.13e-13 | 68.6 |
| MS.gene049553.t1 | MTR_5g094520 | 31.138 | 167 | 102 | 5 | 90 | 256 | 3 | 156 | 6.53e-13 | 68.2 |
| MS.gene049553.t1 | MTR_3g076530 | 25.703 | 249 | 164 | 10 | 12 | 256 | 4 | 235 | 2.98e-12 | 66.6 |
| MS.gene049553.t1 | MTR_4g089020 | 25.126 | 199 | 137 | 3 | 22 | 217 | 2 | 191 | 3.29e-12 | 66.2 |
| MS.gene049553.t1 | MTR_4g104640 | 25.676 | 222 | 145 | 6 | 42 | 258 | 40 | 246 | 3.56e-12 | 66.2 |
| MS.gene049553.t1 | MTR_8g080520 | 25.940 | 266 | 152 | 11 | 6 | 237 | 1 | 255 | 4.13e-12 | 66.2 |
| MS.gene049553.t1 | MTR_1g055325 | 24.171 | 211 | 150 | 3 | 47 | 257 | 51 | 251 | 4.73e-12 | 65.9 |
| MS.gene049553.t1 | MTR_4g025980 | 25.116 | 215 | 145 | 6 | 46 | 257 | 27 | 228 | 6.85e-12 | 65.5 |
| MS.gene049553.t1 | MTR_8g012585 | 29.121 | 182 | 115 | 5 | 80 | 249 | 1 | 180 | 7.05e-12 | 65.5 |
| MS.gene049553.t1 | MTR_4g026070 | 23.043 | 230 | 168 | 3 | 28 | 257 | 7 | 227 | 7.35e-12 | 64.7 |
| MS.gene049553.t1 | MTR_5g045770 | 25.616 | 203 | 138 | 4 | 51 | 251 | 30 | 221 | 7.66e-12 | 65.1 |
| MS.gene049553.t1 | MTR_2g437840 | 25.620 | 242 | 163 | 6 | 22 | 259 | 10 | 238 | 1.02e-11 | 64.7 |
| MS.gene049553.t1 | MTR_0181s0030 | 25.000 | 244 | 168 | 6 | 18 | 260 | 5 | 234 | 1.48e-11 | 64.3 |
| MS.gene049553.t1 | MTR_5g094460 | 26.718 | 131 | 94 | 2 | 26 | 155 | 5 | 134 | 1.79e-11 | 63.9 |
| MS.gene049553.t1 | MTR_4g035330 | 26.291 | 213 | 140 | 8 | 50 | 260 | 30 | 227 | 1.94e-11 | 63.9 |
| MS.gene049553.t1 | MTR_4g026050 | 22.881 | 236 | 173 | 3 | 22 | 257 | 1 | 227 | 2.51e-11 | 63.5 |
| MS.gene049553.t1 | MTR_4g078110 | 31.429 | 140 | 86 | 4 | 22 | 158 | 1 | 133 | 3.14e-11 | 63.5 |
| MS.gene049553.t1 | MTR_1g091010 | 24.706 | 255 | 162 | 6 | 6 | 257 | 1 | 228 | 3.96e-11 | 63.2 |
| MS.gene049553.t1 | MTR_5g095220 | 25.904 | 166 | 98 | 4 | 50 | 212 | 28 | 171 | 4.18e-11 | 63.2 |
| MS.gene049553.t1 | MTR_5g023680 | 25.701 | 214 | 145 | 5 | 46 | 257 | 2 | 203 | 4.23e-11 | 63.2 |
| MS.gene049553.t1 | MTR_4g062500 | 25.455 | 165 | 120 | 1 | 51 | 215 | 36 | 197 | 5.42e-11 | 62.8 |
| MS.gene049553.t1 | MTR_6g008620 | 25.118 | 211 | 140 | 6 | 58 | 257 | 49 | 252 | 9.57e-11 | 62.0 |
| MS.gene049553.t1 | MTR_4g089025 | 24.880 | 209 | 135 | 5 | 10 | 206 | 15 | 213 | 9.67e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049553.t1 | AT2G22330 | 51.082 | 231 | 111 | 2 | 31 | 260 | 40 | 269 | 1.37e-77 | 244 |
| MS.gene049553.t1 | AT2G22330 | 51.082 | 231 | 111 | 2 | 31 | 260 | 63 | 292 | 1.64e-77 | 245 |
| MS.gene049553.t1 | AT4G39950 | 45.736 | 258 | 132 | 2 | 4 | 260 | 17 | 267 | 2.76e-77 | 244 |
| MS.gene049553.t1 | AT4G39950 | 45.736 | 258 | 132 | 2 | 4 | 260 | 57 | 307 | 1.03e-76 | 243 |
| MS.gene049553.t1 | AT5G05260 | 52.294 | 218 | 97 | 4 | 50 | 260 | 40 | 257 | 2.43e-74 | 235 |
| MS.gene049553.t1 | AT5G05260 | 52.294 | 218 | 97 | 4 | 50 | 260 | 40 | 257 | 7.28e-74 | 234 |
| MS.gene049553.t1 | AT5G35917 | 49.782 | 229 | 106 | 4 | 41 | 260 | 33 | 261 | 9.72e-72 | 228 |
| MS.gene049553.t1 | AT1G58260 | 41.224 | 245 | 138 | 2 | 18 | 259 | 8 | 249 | 5.60e-55 | 185 |
| MS.gene049553.t1 | AT1G79370 | 43.256 | 215 | 115 | 1 | 47 | 254 | 37 | 251 | 1.26e-50 | 174 |
| MS.gene049553.t1 | AT1G16410 | 32.661 | 248 | 163 | 2 | 6 | 250 | 2 | 248 | 5.27e-39 | 140 |
| MS.gene049553.t1 | AT1G16410 | 32.661 | 248 | 163 | 2 | 6 | 250 | 2 | 248 | 2.54e-38 | 140 |
| MS.gene049553.t1 | AT1G16400 | 35.426 | 223 | 136 | 2 | 36 | 250 | 25 | 247 | 2.84e-35 | 132 |
| MS.gene049553.t1 | AT5G07990 | 31.174 | 247 | 144 | 9 | 23 | 260 | 4 | 233 | 6.84e-23 | 97.8 |
| MS.gene049553.t1 | AT3G53300 | 32.143 | 168 | 104 | 3 | 45 | 208 | 23 | 184 | 5.27e-22 | 95.1 |
| MS.gene049553.t1 | AT3G53280 | 31.034 | 174 | 109 | 3 | 45 | 213 | 23 | 190 | 4.05e-20 | 89.7 |
| MS.gene049553.t1 | AT1G13090 | 31.383 | 188 | 114 | 2 | 45 | 232 | 23 | 195 | 7.35e-20 | 87.0 |
| MS.gene049553.t1 | AT1G13090 | 31.383 | 188 | 114 | 2 | 45 | 232 | 23 | 195 | 2.51e-19 | 87.4 |
| MS.gene049553.t1 | AT4G37370 | 29.614 | 233 | 148 | 7 | 31 | 256 | 11 | 234 | 3.49e-19 | 87.0 |
| MS.gene049553.t1 | AT4G12320 | 27.391 | 230 | 159 | 3 | 31 | 260 | 23 | 244 | 3.75e-19 | 87.0 |
| MS.gene049553.t1 | AT4G37320 | 28.643 | 199 | 137 | 4 | 25 | 220 | 6 | 202 | 8.11e-19 | 85.9 |
| MS.gene049553.t1 | AT3G26190 | 29.070 | 172 | 113 | 2 | 45 | 213 | 23 | 188 | 8.91e-19 | 85.9 |
| MS.gene049553.t1 | AT5G67310 | 26.613 | 248 | 155 | 10 | 22 | 261 | 18 | 246 | 1.22e-18 | 85.5 |
| MS.gene049553.t1 | AT4G12300 | 28.814 | 236 | 148 | 6 | 31 | 260 | 23 | 244 | 2.37e-18 | 84.7 |
| MS.gene049553.t1 | AT5G25120 | 26.939 | 245 | 153 | 8 | 19 | 257 | 2 | 226 | 4.01e-18 | 84.0 |
| MS.gene049553.t1 | AT5G25130 | 26.122 | 245 | 155 | 8 | 19 | 257 | 2 | 226 | 6.15e-18 | 83.2 |
| MS.gene049553.t1 | AT3G44250 | 29.240 | 171 | 116 | 3 | 45 | 213 | 23 | 190 | 6.22e-17 | 80.5 |
| MS.gene049553.t1 | AT4G37340 | 28.333 | 240 | 150 | 8 | 20 | 253 | 8 | 231 | 7.11e-17 | 80.1 |
| MS.gene049553.t1 | AT5G10610 | 23.333 | 240 | 169 | 6 | 18 | 254 | 2 | 229 | 7.45e-17 | 80.1 |
| MS.gene049553.t1 | AT1G01280 | 28.571 | 168 | 118 | 1 | 90 | 257 | 69 | 234 | 1.00e-16 | 79.7 |
| MS.gene049553.t1 | AT5G42590 | 27.570 | 214 | 137 | 6 | 43 | 253 | 26 | 224 | 2.15e-16 | 79.0 |
| MS.gene049553.t1 | AT2G23190 | 25.424 | 236 | 164 | 7 | 24 | 254 | 49 | 277 | 3.11e-16 | 78.6 |
| MS.gene049553.t1 | AT3G26200 | 29.412 | 170 | 117 | 2 | 44 | 213 | 22 | 188 | 3.74e-16 | 78.2 |
| MS.gene049553.t1 | AT4G13770 | 26.263 | 198 | 135 | 3 | 26 | 217 | 3 | 195 | 4.57e-16 | 77.8 |
| MS.gene049553.t1 | AT5G25140 | 25.417 | 240 | 154 | 7 | 19 | 253 | 2 | 221 | 4.97e-16 | 77.8 |
| MS.gene049553.t1 | AT4G15330 | 30.357 | 168 | 105 | 3 | 47 | 207 | 31 | 193 | 5.44e-16 | 77.8 |
| MS.gene049553.t1 | AT1G13110 | 30.952 | 168 | 107 | 3 | 45 | 209 | 27 | 188 | 6.61e-16 | 77.4 |
| MS.gene049553.t1 | AT3G26280 | 30.464 | 151 | 90 | 3 | 27 | 174 | 32 | 170 | 6.75e-16 | 77.4 |
| MS.gene049553.t1 | AT3G26280 | 30.464 | 151 | 90 | 3 | 27 | 174 | 15 | 153 | 6.99e-16 | 77.4 |
| MS.gene049553.t1 | AT3G53305 | 27.160 | 162 | 112 | 2 | 90 | 251 | 3 | 158 | 1.32e-15 | 75.9 |
| MS.gene049553.t1 | AT5G10600 | 24.583 | 240 | 165 | 7 | 18 | 254 | 19 | 245 | 1.36e-15 | 76.6 |
| MS.gene049553.t1 | AT5G25180 | 24.370 | 238 | 165 | 6 | 21 | 257 | 3 | 226 | 1.43e-15 | 76.3 |
| MS.gene049553.t1 | AT4G31500 | 27.168 | 173 | 122 | 2 | 49 | 219 | 28 | 198 | 2.03e-15 | 75.9 |
| MS.gene049553.t1 | AT4G37430 | 24.696 | 247 | 161 | 8 | 22 | 256 | 2 | 235 | 6.88e-15 | 74.3 |
| MS.gene049553.t1 | AT3G52970 | 23.952 | 167 | 119 | 2 | 24 | 187 | 10 | 171 | 7.25e-15 | 74.3 |
| MS.gene049553.t1 | AT3G26330 | 25.373 | 201 | 140 | 4 | 51 | 251 | 32 | 222 | 8.95e-15 | 73.9 |
| MS.gene049553.t1 | AT3G52970 | 23.952 | 167 | 119 | 2 | 24 | 187 | 10 | 171 | 9.03e-15 | 73.9 |
| MS.gene049553.t1 | AT4G20240 | 34.646 | 127 | 80 | 2 | 46 | 172 | 29 | 152 | 1.02e-14 | 73.6 |
| MS.gene049553.t1 | AT5G24950 | 25.581 | 215 | 141 | 5 | 47 | 257 | 29 | 228 | 1.07e-14 | 73.9 |
| MS.gene049553.t1 | AT4G20240 | 34.921 | 126 | 79 | 2 | 47 | 172 | 30 | 152 | 1.40e-14 | 73.2 |
| MS.gene049553.t1 | AT4G37310 | 24.380 | 242 | 167 | 8 | 22 | 257 | 5 | 236 | 1.62e-14 | 73.2 |
| MS.gene049553.t1 | AT3G26180 | 24.186 | 215 | 148 | 4 | 50 | 261 | 30 | 232 | 1.68e-14 | 73.2 |
| MS.gene049553.t1 | AT5G24960 | 25.581 | 215 | 141 | 5 | 47 | 257 | 30 | 229 | 1.72e-14 | 73.2 |
| MS.gene049553.t1 | AT5G24960 | 25.116 | 215 | 142 | 5 | 47 | 257 | 30 | 229 | 1.74e-14 | 72.8 |
| MS.gene049553.t1 | AT3G26150 | 28.931 | 159 | 98 | 3 | 22 | 177 | 8 | 154 | 1.92e-14 | 73.2 |
| MS.gene049553.t1 | AT3G26320 | 25.822 | 213 | 124 | 6 | 51 | 251 | 32 | 222 | 2.63e-14 | 72.8 |
| MS.gene049553.t1 | AT3G26160 | 34.188 | 117 | 68 | 2 | 50 | 163 | 30 | 140 | 3.94e-14 | 72.0 |
| MS.gene049553.t1 | AT1G11610 | 25.234 | 214 | 143 | 5 | 47 | 257 | 30 | 229 | 7.18e-14 | 71.2 |
| MS.gene049553.t1 | AT1G11610 | 25.234 | 214 | 143 | 5 | 47 | 257 | 30 | 229 | 7.47e-14 | 71.2 |
| MS.gene049553.t1 | AT3G20140 | 35.252 | 139 | 73 | 5 | 50 | 182 | 42 | 169 | 9.05e-14 | 71.2 |
| MS.gene049553.t1 | AT2G40890 | 26.724 | 232 | 158 | 6 | 28 | 254 | 5 | 229 | 1.04e-13 | 70.9 |
| MS.gene049553.t1 | AT3G26830 | 28.931 | 159 | 110 | 1 | 45 | 203 | 23 | 178 | 1.16e-13 | 70.9 |
| MS.gene049553.t1 | AT5G57260 | 25.243 | 206 | 138 | 4 | 49 | 251 | 29 | 221 | 2.26e-13 | 69.7 |
| MS.gene049553.t1 | AT3G48280 | 28.931 | 159 | 104 | 2 | 22 | 177 | 2 | 154 | 2.31e-13 | 69.7 |
| MS.gene049553.t1 | AT3G26270 | 30.000 | 130 | 82 | 2 | 46 | 172 | 28 | 151 | 3.63e-13 | 69.3 |
| MS.gene049553.t1 | AT3G26300 | 25.346 | 217 | 145 | 6 | 46 | 258 | 27 | 230 | 3.66e-13 | 69.3 |
| MS.gene049553.t1 | AT2G30750 | 30.070 | 143 | 91 | 3 | 38 | 177 | 21 | 157 | 4.48e-13 | 68.9 |
| MS.gene049553.t1 | AT2G23220 | 24.775 | 222 | 159 | 7 | 36 | 254 | 32 | 248 | 4.53e-13 | 68.9 |
| MS.gene049553.t1 | AT4G37360 | 27.619 | 210 | 144 | 6 | 47 | 253 | 27 | 231 | 4.62e-13 | 68.9 |
| MS.gene049553.t1 | AT1G13080 | 32.164 | 171 | 100 | 5 | 25 | 189 | 3 | 163 | 7.05e-13 | 68.6 |
| MS.gene049553.t1 | AT3G26170 | 22.857 | 245 | 165 | 5 | 20 | 261 | 9 | 232 | 7.32e-13 | 68.2 |
| MS.gene049553.t1 | AT5G04330 | 33.628 | 113 | 72 | 2 | 51 | 163 | 33 | 142 | 7.82e-13 | 68.2 |
| MS.gene049553.t1 | AT5G06905 | 25.681 | 257 | 159 | 9 | 6 | 258 | 1 | 229 | 1.09e-12 | 67.8 |
| MS.gene049553.t1 | AT4G13290 | 26.728 | 217 | 140 | 6 | 46 | 257 | 29 | 231 | 1.52e-12 | 67.4 |
| MS.gene049553.t1 | AT5G06900 | 25.207 | 242 | 165 | 6 | 23 | 260 | 7 | 236 | 1.62e-12 | 67.4 |
| MS.gene049553.t1 | AT3G26310 | 23.585 | 212 | 128 | 4 | 52 | 251 | 32 | 221 | 3.42e-12 | 66.2 |
| MS.gene049553.t1 | AT3G48290 | 29.143 | 175 | 111 | 5 | 46 | 216 | 29 | 194 | 3.44e-12 | 66.2 |
| MS.gene049553.t1 | AT2G30770 | 30.370 | 135 | 85 | 3 | 46 | 177 | 29 | 157 | 3.48e-12 | 66.2 |
| MS.gene049553.t1 | AT4G37330 | 28.796 | 191 | 117 | 8 | 41 | 221 | 22 | 203 | 3.52e-12 | 66.2 |
| MS.gene049553.t1 | AT3G10560 | 25.714 | 245 | 167 | 6 | 11 | 253 | 10 | 241 | 3.60e-12 | 66.2 |
| MS.gene049553.t1 | AT3G48290 | 29.143 | 175 | 111 | 5 | 46 | 216 | 29 | 194 | 3.78e-12 | 66.2 |
| MS.gene049553.t1 | AT3G28740 | 27.103 | 214 | 146 | 7 | 45 | 254 | 34 | 241 | 3.86e-12 | 66.2 |
| MS.gene049553.t1 | AT3G26220 | 22.034 | 236 | 162 | 5 | 20 | 252 | 5 | 221 | 4.09e-12 | 66.2 |
| MS.gene049553.t1 | AT4G15360 | 25.221 | 226 | 150 | 5 | 18 | 237 | 9 | 221 | 5.49e-12 | 65.9 |
| MS.gene049553.t1 | AT4G13310 | 24.883 | 213 | 141 | 7 | 50 | 257 | 32 | 230 | 9.48e-12 | 65.1 |
| MS.gene049553.t1 | AT4G13310 | 24.883 | 213 | 141 | 7 | 50 | 257 | 32 | 230 | 1.29e-11 | 64.3 |
| MS.gene049553.t1 | AT3G26210 | 28.082 | 146 | 93 | 1 | 87 | 232 | 65 | 198 | 1.36e-11 | 64.7 |
| MS.gene049553.t1 | AT5G35715 | 25.000 | 124 | 93 | 0 | 90 | 213 | 3 | 126 | 1.42e-11 | 64.3 |
| MS.gene049553.t1 | AT1G13100 | 35.227 | 88 | 57 | 0 | 90 | 177 | 62 | 149 | 1.43e-11 | 64.3 |
| MS.gene049553.t1 | AT3G48320 | 24.895 | 237 | 149 | 6 | 31 | 257 | 6 | 223 | 2.19e-11 | 63.9 |
| MS.gene049553.t1 | AT2G24180 | 25.604 | 207 | 134 | 7 | 50 | 251 | 36 | 227 | 2.30e-11 | 63.9 |
| MS.gene049553.t1 | AT2G02580 | 23.478 | 230 | 165 | 5 | 22 | 251 | 4 | 222 | 3.72e-11 | 63.2 |
| MS.gene049553.t1 | AT1G50520 | 27.222 | 180 | 122 | 4 | 20 | 192 | 8 | 185 | 4.70e-11 | 63.2 |
| MS.gene049553.t1 | AT3G20110 | 27.381 | 168 | 111 | 3 | 12 | 176 | 1 | 160 | 6.98e-11 | 62.4 |
| MS.gene049553.t1 | AT3G26290 | 23.423 | 222 | 142 | 5 | 39 | 251 | 33 | 235 | 8.50e-11 | 62.4 |
| MS.gene049553.t1 | AT3G26290 | 23.423 | 222 | 142 | 5 | 39 | 251 | 20 | 222 | 8.55e-11 | 62.0 |
| MS.gene049553.t1 | AT3G48310 | 31.111 | 135 | 84 | 2 | 46 | 177 | 28 | 156 | 8.87e-11 | 62.0 |
| MS.gene049553.t1 | AT3G20080 | 31.034 | 145 | 85 | 4 | 45 | 182 | 33 | 169 | 9.68e-11 | 62.0 |
| MS.gene049553.t1 | AT3G20080 | 31.034 | 145 | 85 | 4 | 45 | 182 | 33 | 169 | 9.68e-11 | 62.0 |
Find 62 sgRNAs with CRISPR-Local
Find 69 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTTGTTTGCAAGCATTTC+AGG | 0.232153 | 3.2:-57883348 | None:intergenic |
| CTCAGTAATGTAGCATCTTA+TGG | 0.249041 | 3.2:-57883265 | None:intergenic |
| ATCAATGGCTTCAAGATAAA+AGG | 0.254882 | 3.2:+57883643 | MS.gene049553:CDS |
| GGTTACCATCCCAGTCCTTT+TGG | 0.266372 | 3.2:+57883199 | MS.gene049553:CDS |
| ATTTCACTAGCTAGGCTTAT+TGG | 0.278371 | 3.2:-57883519 | None:intergenic |
| GCAATGGAGGGAAAAGTAAC+AGG | 0.351027 | 3.2:-57883453 | None:intergenic |
| GACTTAGATGCATGGTCATA+AGG | 0.379157 | 3.2:+57883927 | MS.gene049553:CDS |
| GGATGGAGGGCCTGGTCTTA+AGG | 0.386643 | 3.2:+57883815 | MS.gene049553:CDS |
| ACCAACTATAGGCAATGGTT+TGG | 0.432042 | 3.2:-57883319 | None:intergenic |
| CCAACTATAGGCAATGGTTT+GGG | 0.432686 | 3.2:-57883318 | None:intergenic |
| AATACAAGGTACTTTGGAAA+AGG | 0.435545 | 3.2:+57883786 | MS.gene049553:CDS |
| TCAGGAAGATTACCAACTAT+AGG | 0.436534 | 3.2:-57883330 | None:intergenic |
| CACATAAAACATAAGATTGT+CGG | 0.438363 | 3.2:-57883676 | None:intergenic |
| ATAGGCAATGGTTTGGGACC+AGG | 0.446943 | 3.2:-57883312 | None:intergenic |
| TTGTGTATCCACCTAGCTGC+AGG | 0.449285 | 3.2:-57883369 | None:intergenic |
| TCTCTCCACACAGGCATCAA+TGG | 0.449375 | 3.2:+57883628 | MS.gene049553:CDS |
| CTGATTATATCCCATGTTTG+AGG | 0.467744 | 3.2:+57883898 | MS.gene049553:CDS |
| TCTCAAGAATTCACGGGCAA+TGG | 0.468248 | 3.2:-57883469 | None:intergenic |
| GCTAGTGAAATCATCTCAAA+TGG | 0.469957 | 3.2:+57883531 | MS.gene049553:CDS |
| GGTATGAAGGATGGAGGGCC+TGG | 0.474805 | 3.2:+57883807 | MS.gene049553:CDS |
| ACTTAGATGCATGGTCATAA+GGG | 0.485663 | 3.2:+57883928 | MS.gene049553:CDS |
| CCCAAACCATTGCCTATAGT+TGG | 0.486285 | 3.2:+57883318 | MS.gene049553:CDS |
| TGAAGAAAAGCCAAAAGGAC+TGG | 0.486519 | 3.2:-57883209 | None:intergenic |
| ACCTCAATTCTTGTACCCTA+TGG | 0.492138 | 3.2:+57883561 | MS.gene049553:CDS |
| TTGAGATGATTTCACTAGCT+AGG | 0.511912 | 3.2:-57883527 | None:intergenic |
| CAAGAATTCACGGGCAATGG+AGG | 0.515153 | 3.2:-57883466 | None:intergenic |
| ATCAATGAAGAAAAGCCAAA+AGG | 0.516605 | 3.2:-57883214 | None:intergenic |
| ATGGTGGCCTTGTCAATGTA+AGG | 0.517075 | 3.2:+57883715 | MS.gene049553:CDS |
| ATTACACTACTAGTTTCCTC+TGG | 0.518614 | 3.2:+57883178 | MS.gene049553:CDS |
| TTTGGAAAAGGTATGAAGGA+TGG | 0.527712 | 3.2:+57883798 | MS.gene049553:CDS |
| GAAATAGCGCGTATCCGCCT+AGG | 0.530309 | 3.2:+57883414 | MS.gene049553:CDS |
| GAAGAAAAGCCAAAAGGACT+GGG | 0.531137 | 3.2:-57883208 | None:intergenic |
| TAGGCAATGGTTTGGGACCA+GGG | 0.535787 | 3.2:-57883311 | None:intergenic |
| AGTCAAGTAACCTCAAACAT+GGG | 0.536224 | 3.2:-57883908 | None:intergenic |
| GTACTTTGGAAAAGGTATGA+AGG | 0.540038 | 3.2:+57883794 | MS.gene049553:CDS |
| GGATAACATGGACATTTCCT+AGG | 0.543053 | 3.2:-57883431 | None:intergenic |
| AAGTCAAGTAACCTCAAACA+TGG | 0.559690 | 3.2:-57883909 | None:intergenic |
| TAGGTGGATACACAAGACTA+TGG | 0.562046 | 3.2:+57883377 | MS.gene049553:CDS |
| AAGAATTCACGGGCAATGGA+GGG | 0.574348 | 3.2:-57883465 | None:intergenic |
| GAAAAGTAACAGGGATAACA+TGG | 0.576288 | 3.2:-57883443 | None:intergenic |
| ATTGCTACTCAACATTATTG+TGG | 0.576812 | 3.2:+57883738 | MS.gene049553:CDS |
| GCCATAGGGTACAAGAATTG+AGG | 0.578397 | 3.2:-57883562 | None:intergenic |
| AGATTACCAACTATAGGCAA+TGG | 0.578490 | 3.2:-57883324 | None:intergenic |
| TGTTCAATTTCCTTAAGACC+AGG | 0.583723 | 3.2:-57883825 | None:intergenic |
| AGGCAATGGTTTGGGACCAG+GGG | 0.589217 | 3.2:-57883310 | None:intergenic |
| GGAAAAGGTATGAAGGATGG+AGG | 0.601161 | 3.2:+57883801 | MS.gene049553:CDS |
| TTGCAAACAAACCTGCAGCT+AGG | 0.602841 | 3.2:+57883358 | MS.gene049553:CDS |
| TTGTACCCTATGGCGAACAA+TGG | 0.607756 | 3.2:+57883571 | MS.gene049553:CDS |
| TGTTTGAGAATGATTTGCGA+AGG | 0.608803 | 3.2:+57883150 | None:intergenic |
| AAGATTTGTTCTCTCCACAC+AGG | 0.621068 | 3.2:+57883619 | MS.gene049553:CDS |
| GGTTACTTGACTTAGATGCA+TGG | 0.624272 | 3.2:+57883919 | MS.gene049553:CDS |
| AAAAGCCAAAAGGACTGGGA+TGG | 0.631073 | 3.2:-57883204 | None:intergenic |
| CAAACAAACCTGCAGCTAGG+TGG | 0.631866 | 3.2:+57883361 | MS.gene049553:CDS |
| GAAAAGGTATGAAGGATGGA+GGG | 0.635374 | 3.2:+57883802 | MS.gene049553:CDS |
| GTGTACAACAAATGTAACAA+TGG | 0.640902 | 3.2:+57883696 | MS.gene049553:CDS |
| GGCAATGGTTTGGGACCAGG+GGG | 0.644821 | 3.2:-57883309 | None:intergenic |
| TAGCAATCCTTACATTGACA+AGG | 0.660229 | 3.2:-57883722 | None:intergenic |
| CAATGGAGGGAAAAGTAACA+GGG | 0.667683 | 3.2:-57883452 | None:intergenic |
| TGAAGCCATTGATGCCTGTG+TGG | 0.690414 | 3.2:-57883633 | None:intergenic |
| TACAACAAATGTAACAATGG+TGG | 0.693075 | 3.2:+57883699 | MS.gene049553:CDS |
| AGGACTGGGATGGTAACCAG+AGG | 0.723034 | 3.2:-57883194 | None:intergenic |
| TAACATGGACATTTCCTAGG+CGG | 0.727704 | 3.2:-57883428 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAAACTATTTTTCAATACA+AGG | + | chr3.2:57883772-57883791 | MS.gene049553:CDS | 20.0% |
| ! | CACATAAAACATAAGATTGT+CGG | - | chr3.2:57883679-57883698 | None:intergenic | 25.0% |
| !! | TTCTTCATTGATATGCTTTT+TGG | + | chr3.2:57883225-57883244 | MS.gene049553:CDS | 25.0% |
| !!! | TTTTTCAATACAAGGTACTT+TGG | + | chr3.2:57883780-57883799 | MS.gene049553:CDS | 25.0% |
| ATCAATGAAGAAAAGCCAAA+AGG | - | chr3.2:57883217-57883236 | None:intergenic | 30.0% | |
| ATCAATGGCTTCAAGATAAA+AGG | + | chr3.2:57883643-57883662 | MS.gene049553:CDS | 30.0% | |
| ATTGCTACTCAACATTATTG+TGG | + | chr3.2:57883738-57883757 | MS.gene049553:CDS | 30.0% | |
| GTGTACAACAAATGTAACAA+TGG | + | chr3.2:57883696-57883715 | MS.gene049553:CDS | 30.0% | |
| TACAACAAATGTAACAATGG+TGG | + | chr3.2:57883699-57883718 | MS.gene049553:CDS | 30.0% | |
| ! | AATACAAGGTACTTTGGAAA+AGG | + | chr3.2:57883786-57883805 | MS.gene049553:CDS | 30.0% |
| ! | ATGTTTTCTCAAGAATTCAC+GGG | - | chr3.2:57883478-57883497 | None:intergenic | 30.0% |
| ! | CATGTTTTCTCAAGAATTCA+CGG | - | chr3.2:57883479-57883498 | None:intergenic | 30.0% |
| AAGTCAAGTAACCTCAAACA+TGG | - | chr3.2:57883912-57883931 | None:intergenic | 35.0% | |
| AGATTACCAACTATAGGCAA+TGG | - | chr3.2:57883327-57883346 | None:intergenic | 35.0% | |
| AGTCAAGTAACCTCAAACAT+GGG | - | chr3.2:57883911-57883930 | None:intergenic | 35.0% | |
| ATTTCACTAGCTAGGCTTAT+TGG | - | chr3.2:57883522-57883541 | None:intergenic | 35.0% | |
| CTCAGTAATGTAGCATCTTA+TGG | - | chr3.2:57883268-57883287 | None:intergenic | 35.0% | |
| CTGATTATATCCCATGTTTG+AGG | + | chr3.2:57883898-57883917 | MS.gene049553:CDS | 35.0% | |
| GAAAAGTAACAGGGATAACA+TGG | - | chr3.2:57883446-57883465 | None:intergenic | 35.0% | |
| GCTAGTGAAATCATCTCAAA+TGG | + | chr3.2:57883531-57883550 | MS.gene049553:CDS | 35.0% | |
| TAGCAATCCTTACATTGACA+AGG | - | chr3.2:57883725-57883744 | None:intergenic | 35.0% | |
| TCAGGAAGATTACCAACTAT+AGG | - | chr3.2:57883333-57883352 | None:intergenic | 35.0% | |
| TGTTCAATTTCCTTAAGACC+AGG | - | chr3.2:57883828-57883847 | None:intergenic | 35.0% | |
| TTGAGATGATTTCACTAGCT+AGG | - | chr3.2:57883530-57883549 | None:intergenic | 35.0% | |
| ! | ATTACACTACTAGTTTCCTC+TGG | + | chr3.2:57883178-57883197 | MS.gene049553:CDS | 35.0% |
| ! | GTACTTTGGAAAAGGTATGA+AGG | + | chr3.2:57883794-57883813 | MS.gene049553:CDS | 35.0% |
| ! | TTTGGAAAAGGTATGAAGGA+TGG | + | chr3.2:57883798-57883817 | MS.gene049553:CDS | 35.0% |
| ! | TTTTTCCATTGTTCGCCATA+GGG | - | chr3.2:57883579-57883598 | None:intergenic | 35.0% |
| ACCAACTATAGGCAATGGTT+TGG | - | chr3.2:57883322-57883341 | None:intergenic | 40.0% | |
| ACCTCAATTCTTGTACCCTA+TGG | + | chr3.2:57883561-57883580 | MS.gene049553:CDS | 40.0% | |
| CAATGGAGGGAAAAGTAACA+GGG | - | chr3.2:57883455-57883474 | None:intergenic | 40.0% | |
| CCAACTATAGGCAATGGTTT+GGG | - | chr3.2:57883321-57883340 | None:intergenic | 40.0% | |
| GAAGAAAAGCCAAAAGGACT+GGG | - | chr3.2:57883211-57883230 | None:intergenic | 40.0% | |
| GGATAACATGGACATTTCCT+AGG | - | chr3.2:57883434-57883453 | None:intergenic | 40.0% | |
| GGTTACTTGACTTAGATGCA+TGG | + | chr3.2:57883919-57883938 | MS.gene049553:CDS | 40.0% | |
| TAACATGGACATTTCCTAGG+CGG | - | chr3.2:57883431-57883450 | None:intergenic | 40.0% | |
| TAGGTGGATACACAAGACTA+TGG | + | chr3.2:57883377-57883396 | MS.gene049553:CDS | 40.0% | |
| TGAAGAAAAGCCAAAAGGAC+TGG | - | chr3.2:57883212-57883231 | None:intergenic | 40.0% | |
| ! | AAGATTTGTTCTCTCCACAC+AGG | + | chr3.2:57883619-57883638 | MS.gene049553:CDS | 40.0% |
| ! | CTTTTTCCATTGTTCGCCAT+AGG | - | chr3.2:57883580-57883599 | None:intergenic | 40.0% |
| ! | GAAAAGGTATGAAGGATGGA+GGG | + | chr3.2:57883802-57883821 | MS.gene049553:CDS | 40.0% |
| ! | GGTTTGTTTGCAAGCATTTC+AGG | - | chr3.2:57883351-57883370 | None:intergenic | 40.0% |
| AAAAGCCAAAAGGACTGGGA+TGG | - | chr3.2:57883207-57883226 | None:intergenic | 45.0% | |
| AACAAACCTAAACTTCCCCC+TGG | + | chr3.2:57883294-57883313 | MS.gene049553:CDS | 45.0% | |
| AAGAATTCACGGGCAATGGA+GGG | - | chr3.2:57883468-57883487 | None:intergenic | 45.0% | |
| CCCAAACCATTGCCTATAGT+TGG | + | chr3.2:57883318-57883337 | MS.gene049553:CDS | 45.0% | |
| GCAATGGAGGGAAAAGTAAC+AGG | - | chr3.2:57883456-57883475 | None:intergenic | 45.0% | |
| GCCATAGGGTACAAGAATTG+AGG | - | chr3.2:57883565-57883584 | None:intergenic | 45.0% | |
| TCTCAAGAATTCACGGGCAA+TGG | - | chr3.2:57883472-57883491 | None:intergenic | 45.0% | |
| TTGCAAACAAACCTGCAGCT+AGG | + | chr3.2:57883358-57883377 | MS.gene049553:CDS | 45.0% | |
| TTGTACCCTATGGCGAACAA+TGG | + | chr3.2:57883571-57883590 | MS.gene049553:CDS | 45.0% | |
| ! | GGAAAAGGTATGAAGGATGG+AGG | + | chr3.2:57883801-57883820 | MS.gene049553:CDS | 45.0% |
| ! | GGGGGAAGTTTAGGTTTGTT+AGG | - | chr3.2:57883294-57883313 | None:intergenic | 45.0% |
| !! | ATGGTGGCCTTGTCAATGTA+AGG | + | chr3.2:57883715-57883734 | MS.gene049553:CDS | 45.0% |
| CAAACAAACCTGCAGCTAGG+TGG | + | chr3.2:57883361-57883380 | MS.gene049553:CDS | 50.0% | |
| CAAGAATTCACGGGCAATGG+AGG | - | chr3.2:57883469-57883488 | None:intergenic | 50.0% | |
| TCTCTCCACACAGGCATCAA+TGG | + | chr3.2:57883628-57883647 | MS.gene049553:CDS | 50.0% | |
| TGAAGCCATTGATGCCTGTG+TGG | - | chr3.2:57883636-57883655 | None:intergenic | 50.0% | |
| TTGTGTATCCACCTAGCTGC+AGG | - | chr3.2:57883372-57883391 | None:intergenic | 50.0% | |
| ! | ATAGGCAATGGTTTGGGACC+AGG | - | chr3.2:57883315-57883334 | None:intergenic | 50.0% |
| ! | GGTTACCATCCCAGTCCTTT+TGG | + | chr3.2:57883199-57883218 | MS.gene049553:CDS | 50.0% |
| ! | TAGGCAATGGTTTGGGACCA+GGG | - | chr3.2:57883314-57883333 | None:intergenic | 50.0% |
| AGGACTGGGATGGTAACCAG+AGG | - | chr3.2:57883197-57883216 | None:intergenic | 55.0% | |
| GAAATAGCGCGTATCCGCCT+AGG | + | chr3.2:57883414-57883433 | MS.gene049553:CDS | 55.0% | |
| TTGGGACCAGGGGGAAGTTT+AGG | - | chr3.2:57883303-57883322 | None:intergenic | 55.0% | |
| ! | AGGCAATGGTTTGGGACCAG+GGG | - | chr3.2:57883313-57883332 | None:intergenic | 55.0% |
| GGTATGAAGGATGGAGGGCC+TGG | + | chr3.2:57883807-57883826 | MS.gene049553:CDS | 60.0% | |
| ! | GGCAATGGTTTGGGACCAGG+GGG | - | chr3.2:57883312-57883331 | None:intergenic | 60.0% |
| !! | GGATGGAGGGCCTGGTCTTA+AGG | + | chr3.2:57883815-57883834 | MS.gene049553:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 57883159 | 57883947 | 57883159 | ID=MS.gene049553 |
| chr3.2 | mRNA | 57883159 | 57883947 | 57883159 | ID=MS.gene049553.t1;Parent=MS.gene049553 |
| chr3.2 | exon | 57883159 | 57883947 | 57883159 | ID=MS.gene049553.t1.exon1;Parent=MS.gene049553.t1 |
| chr3.2 | CDS | 57883159 | 57883947 | 57883159 | ID=cds.MS.gene049553.t1;Parent=MS.gene049553.t1 |
| Gene Sequence |
| Protein sequence |
