AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41486

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41486.t1 MTR_3g467200 87.692 260 32 0 1 260 1 260 2.99e-157 448
MS.gene41486.t1 MTR_3g467220 76.078 255 61 0 6 260 1 255 6.46e-144 414
MS.gene41486.t1 MTR_3g467290 68.702 262 79 1 1 259 1 262 9.97e-130 378
MS.gene41486.t1 MTR_3g465300 73.140 242 64 1 20 260 16 257 1.39e-129 377
MS.gene41486.t1 MTR_8g073960 56.275 247 105 1 17 260 11 257 9.45e-96 291
MS.gene41486.t1 MTR_8g073950 57.085 247 99 3 17 260 11 253 6.09e-94 286
MS.gene41486.t1 MTR_8g076390 56.275 247 105 1 17 260 11 257 3.64e-85 263
MS.gene41486.t1 MTR_8g076372 56.275 247 105 1 17 260 11 257 4.21e-85 263
MS.gene41486.t1 MTR_3g467250 66.923 130 37 2 80 206 2 128 2.15e-57 182
MS.gene41486.t1 MTR_5g019010 28.452 239 152 5 23 258 7 229 2.33e-24 101
MS.gene41486.t1 MTR_6g084770 31.224 237 143 6 27 260 14 233 1.17e-22 97.1
MS.gene41486.t1 MTR_3g058220 30.222 225 135 8 19 237 9 217 1.66e-22 96.7
MS.gene41486.t1 MTR_1g035190 31.088 193 126 4 43 235 13 198 2.51e-22 95.9
MS.gene41486.t1 MTR_3g058060 27.869 244 153 5 18 256 4 229 2.71e-22 96.3
MS.gene41486.t1 MTR_3g057970 31.863 204 119 6 22 220 6 194 3.53e-22 95.5
MS.gene41486.t1 MTR_3g057900 31.863 204 122 6 22 220 6 197 4.29e-22 95.1
MS.gene41486.t1 MTR_5g095290 33.333 165 100 3 31 192 22 179 7.72e-22 94.7
MS.gene41486.t1 MTR_5g073250 32.353 170 111 3 23 192 12 177 8.34e-22 94.4
MS.gene41486.t1 MTR_3g057910 28.837 215 131 4 45 256 33 228 8.68e-22 94.4
MS.gene41486.t1 MTR_8g091690 30.137 219 131 5 49 262 27 228 4.68e-21 92.0
MS.gene41486.t1 MTR_5g094840 28.972 214 137 6 9 220 5 205 4.89e-21 92.4
MS.gene41486.t1 MTR_7g087520 30.043 233 145 7 33 257 16 238 6.45e-21 92.0
MS.gene41486.t1 MTR_8g466180 28.632 234 148 6 19 252 7 221 7.20e-21 91.7
MS.gene41486.t1 MTR_5g094540 31.395 172 112 4 22 192 11 177 1.03e-20 91.3
MS.gene41486.t1 MTR_3g025260 29.208 202 138 2 59 260 41 237 1.12e-20 91.3
MS.gene41486.t1 MTR_6g462640 30.806 211 123 7 13 220 6 196 1.62e-20 90.9
MS.gene41486.t1 MTR_3g057800 30.409 171 108 4 49 216 35 197 2.63e-20 90.1
MS.gene41486.t1 MTR_3g058110 28.205 234 150 6 19 252 10 225 4.30e-20 89.7
MS.gene41486.t1 MTR_0059s0170 31.579 171 100 4 15 177 1 162 4.30e-20 89.7
MS.gene41486.t1 MTR_1g442730 31.765 170 108 3 23 192 11 172 4.40e-20 89.4
MS.gene41486.t1 MTR_5g094550 28.033 239 149 6 22 256 11 230 5.30e-20 89.4
MS.gene41486.t1 MTR_3g025230 28.713 202 139 2 59 260 41 237 6.19e-20 89.0
MS.gene41486.t1 MTR_0554s0020 28.713 202 128 6 22 220 10 198 7.65e-20 89.0
MS.gene41486.t1 MTR_5g094520 31.250 240 145 9 19 257 42 262 9.61e-20 88.6
MS.gene41486.t1 MTR_3g057980 35.172 145 84 3 50 191 36 173 1.01e-19 88.6
MS.gene41486.t1 MTR_6g039630 28.205 234 149 6 19 252 7 221 1.61e-19 85.9
MS.gene41486.t1 MTR_5g094660 28.638 213 136 6 50 261 38 235 2.09e-19 87.4
MS.gene41486.t1 MTR_3g057860 25.410 244 160 6 20 258 5 231 2.21e-19 87.4
MS.gene41486.t1 MTR_3g024520 28.218 202 140 2 59 260 41 237 2.24e-19 87.4
MS.gene41486.t1 MTR_3g058390 30.460 174 105 4 13 183 6 166 3.10e-19 87.0
MS.gene41486.t1 MTR_5g073320 28.037 214 141 4 44 257 32 232 3.54e-19 87.0
MS.gene41486.t1 MTR_5g094560 27.686 242 148 7 22 257 11 231 4.84e-19 86.7
MS.gene41486.t1 MTR_3g058400 27.193 228 145 6 32 256 19 228 5.28e-19 86.3
MS.gene41486.t1 MTR_5g095260 35.172 145 84 3 50 191 41 178 8.91e-19 85.9
MS.gene41486.t1 MTR_3g058250 28.856 201 125 5 12 209 5 190 1.80e-18 84.7
MS.gene41486.t1 MTR_4g133750 30.286 175 108 4 6 177 1 164 1.89e-18 84.7
MS.gene41486.t1 MTR_3g058000 27.143 210 132 4 50 256 38 229 2.18e-18 84.7
MS.gene41486.t1 MTR_5g070710 30.159 252 139 8 20 262 11 234 2.53e-18 84.3
MS.gene41486.t1 MTR_1g035140 27.179 195 134 3 22 216 13 199 3.07e-18 84.3
MS.gene41486.t1 MTR_5g018980 32.639 144 95 1 49 192 33 174 3.14e-18 84.0
MS.gene41486.t1 MTR_6g035100 27.778 180 114 4 6 182 1 167 3.19e-18 84.0
MS.gene41486.t1 MTR_2g010530 32.877 146 88 3 50 192 34 172 3.82e-18 84.0
MS.gene41486.t1 MTR_2g065360 27.189 217 142 3 49 262 6 209 5.38e-18 83.2
MS.gene41486.t1 MTR_5g094570 29.240 171 117 3 22 192 11 177 5.50e-18 83.6
MS.gene41486.t1 MTR_6g034965 27.222 180 115 4 6 182 1 167 7.49e-18 83.2
MS.gene41486.t1 MTR_5g016410 26.316 247 167 6 19 260 3 239 1.07e-17 82.4
MS.gene41486.t1 MTR_1g097240 25.726 241 161 5 23 260 3 228 1.26e-17 82.4
MS.gene41486.t1 MTR_0171s0010 32.558 172 113 3 23 192 6 176 1.56e-17 82.0
MS.gene41486.t1 MTR_3g058240 31.333 150 93 3 50 196 1 143 1.68e-17 82.0
MS.gene41486.t1 MTR_4g048580 30.159 189 123 6 23 208 12 194 1.73e-17 82.0
MS.gene41486.t1 MTR_7g056103 27.236 246 154 7 20 261 11 235 2.09e-17 81.6
MS.gene41486.t1 MTR_5g070850 26.364 220 136 5 49 262 36 235 2.35e-17 81.6
MS.gene41486.t1 MTR_4g104610 26.383 235 153 6 22 253 2 219 3.50e-17 80.9
MS.gene41486.t1 MTR_7g075390 25.523 239 163 4 22 257 7 233 4.96e-17 80.5
MS.gene41486.t1 MTR_3g058210 28.436 211 133 6 50 254 37 235 6.44e-17 80.1
MS.gene41486.t1 MTR_3g076560 28.112 249 143 8 19 258 28 249 7.40e-17 80.1
MS.gene41486.t1 MTR_6g035115 31.507 146 90 3 50 192 37 175 9.31e-17 79.7
MS.gene41486.t1 MTR_4g102310 28.070 228 154 4 33 260 22 239 1.05e-16 79.7
MS.gene41486.t1 MTR_8g020940 27.397 219 145 6 46 261 32 239 1.63e-16 79.0
MS.gene41486.t1 MTR_7g092620 27.551 196 130 4 18 210 5 191 2.37e-16 78.6
MS.gene41486.t1 MTR_8g076290 28.302 212 126 8 51 257 36 226 2.60e-16 78.6
MS.gene41486.t1 MTR_4g104550 29.293 198 130 3 44 237 21 212 3.10e-16 78.2
MS.gene41486.t1 MTR_5g073240 32.609 138 88 2 24 161 60 192 3.31e-16 75.1
MS.gene41486.t1 MTR_5g018990 29.545 132 87 2 49 177 34 162 3.84e-16 78.2
MS.gene41486.t1 MTR_1g103680 25.417 240 160 6 23 257 7 232 4.78e-16 77.8
MS.gene41486.t1 MTR_5g094535 31.387 137 92 2 27 163 16 150 8.59e-16 74.7
MS.gene41486.t1 MTR_5g070700 28.636 220 131 5 49 262 36 235 1.10e-15 76.6
MS.gene41486.t1 MTR_8g020950 27.982 218 143 6 47 261 35 241 1.18e-15 76.6
MS.gene41486.t1 MTR_5g007460 27.982 218 142 5 44 257 3 209 1.26e-15 76.3
MS.gene41486.t1 MTR_8g020960 27.523 218 144 6 47 261 34 240 2.38e-15 75.9
MS.gene41486.t1 MTR_5g070690 33.133 166 97 5 17 177 3 159 2.44e-15 75.5
MS.gene41486.t1 MTR_5g070800 33.133 166 97 5 17 177 3 159 2.44e-15 75.5
MS.gene41486.t1 MTR_5g070980 29.302 215 122 7 49 255 36 228 2.62e-15 73.6
MS.gene41486.t1 MTR_5g018480 25.664 226 153 6 42 260 32 249 2.77e-15 74.7
MS.gene41486.t1 MTR_8g104080 25.600 250 154 7 19 259 5 231 2.85e-15 74.3
MS.gene41486.t1 MTR_4g095050 28.141 199 135 4 23 216 4 199 3.02e-15 75.5
MS.gene41486.t1 MTR_4g109470 27.536 207 135 6 59 260 40 236 4.57e-15 74.7
MS.gene41486.t1 MTR_5g470730 28.571 217 135 5 49 262 36 235 4.77e-15 74.7
MS.gene41486.t1 MTR_8g046240 25.101 247 171 5 18 260 5 241 5.06e-15 74.7
MS.gene41486.t1 MTR_5g070920 28.685 251 146 7 19 262 11 235 5.07e-15 74.7
MS.gene41486.t1 MTR_4g471620 34.146 123 74 2 51 171 38 155 9.80e-15 71.2
MS.gene41486.t1 MTR_7g075610 25.000 220 151 3 41 257 25 233 1.03e-14 73.9
MS.gene41486.t1 MTR_4g094772 25.352 213 142 6 50 260 33 230 1.03e-14 73.9
MS.gene41486.t1 MTR_5g072980 25.000 204 140 4 50 251 33 225 1.25e-14 73.6
MS.gene41486.t1 MTR_5g072930 25.000 204 140 4 50 251 33 225 1.25e-14 73.6
MS.gene41486.t1 MTR_8g046210 24.800 250 168 5 18 260 5 241 1.46e-14 73.2
MS.gene41486.t1 MTR_1g023700 28.037 214 140 4 51 257 34 240 1.74e-14 73.2
MS.gene41486.t1 MTR_1g023730 32.308 130 80 2 51 177 33 157 1.89e-14 73.2
MS.gene41486.t1 MTR_5g016440 25.306 245 169 7 18 261 3 234 2.90e-14 72.4
MS.gene41486.t1 MTR_5g007450 24.380 242 160 4 19 257 11 232 3.55e-14 72.0
MS.gene41486.t1 MTR_1g023720 31.538 130 81 2 51 177 33 157 3.74e-14 72.0
MS.gene41486.t1 MTR_5g007550 24.380 242 160 4 19 257 11 232 3.93e-14 72.0
MS.gene41486.t1 MTR_4g071710 34.146 123 74 2 51 171 38 155 4.16e-14 72.0
MS.gene41486.t1 MTR_4g104660 24.242 231 166 3 23 250 19 243 4.35e-14 72.0
MS.gene41486.t1 MTR_3g436540 23.482 247 166 6 17 260 15 241 5.98e-14 71.6
MS.gene41486.t1 MTR_5g075450 24.645 211 144 5 49 254 32 232 6.32e-14 71.6
MS.gene41486.t1 MTR_4g089055 27.600 250 156 6 10 256 15 242 8.26e-14 71.2
MS.gene41486.t1 MTR_7g012330 25.806 217 148 5 43 257 27 232 9.21e-14 70.9
MS.gene41486.t1 MTR_5g021390 26.512 215 134 7 47 257 41 235 9.31e-14 70.9
MS.gene41486.t1 MTR_7g012860 25.592 211 142 4 50 257 33 231 9.84e-14 70.9
MS.gene41486.t1 MTR_0287s0060 25.592 211 142 4 50 257 33 231 9.84e-14 70.9
MS.gene41486.t1 MTR_3g058380 31.677 161 100 4 97 254 1 154 2.24e-13 69.7
MS.gene41486.t1 MTR_5g073230 34.188 117 71 3 44 158 35 147 2.30e-13 69.7
MS.gene41486.t1 MTR_4g094775 26.923 234 163 6 28 259 11 238 2.90e-13 69.3
MS.gene41486.t1 MTR_1g103670 24.528 212 144 5 49 257 33 231 3.73e-13 69.3
MS.gene41486.t1 MTR_6g008500 26.423 246 135 7 42 258 34 262 4.03e-13 68.9
MS.gene41486.t1 MTR_2g450040 25.792 221 147 7 47 258 34 246 4.28e-13 68.9
MS.gene41486.t1 MTR_3g076550 25.000 240 118 7 24 258 52 234 5.85e-13 68.6
MS.gene41486.t1 MTR_0171s0020 29.310 174 118 4 22 192 5 176 5.87e-13 68.6
MS.gene41486.t1 MTR_5g094520 30.539 167 103 5 90 256 3 156 1.06e-12 67.8
MS.gene41486.t1 MTR_4g089020 25.126 199 137 3 22 217 2 191 3.35e-12 66.2
MS.gene41486.t1 MTR_3g076530 25.703 249 164 10 12 256 4 235 3.49e-12 66.2
MS.gene41486.t1 MTR_8g080520 25.940 266 152 11 6 237 1 255 3.66e-12 66.2
MS.gene41486.t1 MTR_4g104640 25.676 222 145 6 42 258 40 246 4.93e-12 65.9
MS.gene41486.t1 MTR_1g055325 25.000 212 147 4 47 257 51 251 5.19e-12 65.9
MS.gene41486.t1 MTR_8g012585 29.121 182 115 5 80 249 1 180 5.33e-12 65.5
MS.gene41486.t1 MTR_4g025980 25.116 215 145 6 46 257 27 228 7.45e-12 65.5
MS.gene41486.t1 MTR_4g026070 23.043 230 168 3 28 257 7 227 8.24e-12 64.7
MS.gene41486.t1 MTR_5g045770 25.616 203 138 4 51 251 30 221 9.40e-12 65.1
MS.gene41486.t1 MTR_2g437840 23.750 240 170 4 22 259 10 238 1.02e-11 64.7
MS.gene41486.t1 MTR_5g094460 26.718 131 94 2 26 155 5 134 1.68e-11 63.9
MS.gene41486.t1 MTR_4g035330 26.291 213 140 8 50 260 30 227 1.80e-11 64.3
MS.gene41486.t1 MTR_0181s0030 25.306 245 166 6 18 260 5 234 1.88e-11 63.9
MS.gene41486.t1 MTR_4g026050 22.881 236 173 3 22 257 1 227 2.78e-11 63.5
MS.gene41486.t1 MTR_4g078110 31.429 140 86 4 22 158 1 133 3.05e-11 63.5
MS.gene41486.t1 MTR_1g091010 24.706 255 162 6 6 257 1 228 3.68e-11 63.2
MS.gene41486.t1 MTR_5g095220 25.904 166 98 4 50 212 28 171 4.30e-11 63.2
MS.gene41486.t1 MTR_5g023680 25.701 214 145 5 46 257 2 203 5.04e-11 62.8
MS.gene41486.t1 MTR_4g062500 25.455 165 120 1 51 215 36 197 5.17e-11 62.8
MS.gene41486.t1 MTR_4g062510 23.316 193 139 2 70 261 54 238 7.80e-11 62.4
MS.gene41486.t1 MTR_4g089025 24.880 209 135 5 10 206 15 213 8.81e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41486.t1 AT2G22330 50.649 231 112 2 31 260 40 269 1.95e-77 244
MS.gene41486.t1 AT4G39950 46.124 258 131 2 4 260 17 267 1.98e-77 244
MS.gene41486.t1 AT2G22330 50.649 231 112 2 31 260 63 292 2.49e-77 244
MS.gene41486.t1 AT4G39950 46.124 258 131 2 4 260 57 307 6.56e-77 244
MS.gene41486.t1 AT5G05260 51.835 218 98 4 50 260 40 257 3.98e-74 234
MS.gene41486.t1 AT5G05260 51.835 218 98 4 50 260 40 257 1.27e-73 234
MS.gene41486.t1 AT5G35917 49.345 229 107 4 41 260 33 261 1.66e-71 227
MS.gene41486.t1 AT1G58260 41.224 245 138 2 18 259 8 249 4.58e-55 185
MS.gene41486.t1 AT1G79370 43.256 215 115 1 47 254 37 251 1.09e-50 174
MS.gene41486.t1 AT1G16410 32.661 248 163 2 6 250 2 248 4.19e-39 141
MS.gene41486.t1 AT1G16410 32.661 248 163 2 6 250 2 248 2.41e-38 140
MS.gene41486.t1 AT1G16400 35.426 223 136 2 36 250 25 247 2.39e-35 132
MS.gene41486.t1 AT5G07990 31.174 247 144 9 23 260 4 233 8.96e-23 97.4
MS.gene41486.t1 AT3G53300 32.143 168 104 3 45 208 23 184 4.98e-22 95.1
MS.gene41486.t1 AT3G53280 31.034 174 109 3 45 213 23 190 4.54e-20 89.4
MS.gene41486.t1 AT1G13090 31.383 188 114 2 45 232 23 195 6.45e-20 87.4
MS.gene41486.t1 AT1G13090 31.383 188 114 2 45 232 23 195 2.21e-19 87.4
MS.gene41486.t1 AT4G37370 30.043 233 147 7 31 256 11 234 2.30e-19 87.4
MS.gene41486.t1 AT4G12320 27.826 230 158 3 31 260 23 244 2.42e-19 87.4
MS.gene41486.t1 AT4G37320 28.643 199 137 4 25 220 6 202 7.52e-19 85.9
MS.gene41486.t1 AT3G26190 29.070 172 113 2 45 213 23 188 8.58e-19 85.9
MS.gene41486.t1 AT5G67310 26.613 248 155 10 22 261 18 246 9.68e-19 85.5
MS.gene41486.t1 AT4G12300 28.814 236 148 6 31 260 23 244 2.35e-18 84.7
MS.gene41486.t1 AT5G25120 27.347 245 152 9 19 257 2 226 3.94e-18 84.0
MS.gene41486.t1 AT5G25130 26.122 245 155 8 19 257 2 226 6.26e-18 83.2
MS.gene41486.t1 AT4G37340 28.750 240 149 8 20 253 8 231 4.31e-17 80.9
MS.gene41486.t1 AT3G44250 27.928 222 134 6 45 257 23 227 5.25e-17 80.5
MS.gene41486.t1 AT5G10610 23.333 240 169 6 18 254 2 229 6.35e-17 80.5
MS.gene41486.t1 AT1G01280 28.571 168 118 1 90 257 69 234 1.33e-16 79.3
MS.gene41486.t1 AT5G42590 28.037 214 136 6 43 253 26 224 1.45e-16 79.3
MS.gene41486.t1 AT2G23190 25.424 236 164 7 24 254 49 277 2.70e-16 78.6
MS.gene41486.t1 AT5G25140 25.833 240 153 7 19 253 2 221 3.61e-16 78.2
MS.gene41486.t1 AT3G26200 29.412 170 117 2 44 213 22 188 3.84e-16 78.2
MS.gene41486.t1 AT4G13770 26.263 198 135 3 26 217 3 195 4.65e-16 77.8
MS.gene41486.t1 AT4G15330 30.357 168 105 3 47 207 31 193 5.54e-16 77.8
MS.gene41486.t1 AT3G26280 30.464 151 90 3 27 174 32 170 6.32e-16 77.4
MS.gene41486.t1 AT1G13110 30.952 168 107 3 45 209 27 188 6.80e-16 77.4
MS.gene41486.t1 AT3G26280 30.464 151 90 3 27 174 15 153 7.40e-16 77.4
MS.gene41486.t1 AT5G25180 24.370 238 165 6 21 257 3 226 1.57e-15 76.3
MS.gene41486.t1 AT3G53305 27.160 162 112 2 90 251 3 158 1.69e-15 75.5
MS.gene41486.t1 AT5G10600 24.583 240 165 7 18 254 19 245 1.73e-15 76.3
MS.gene41486.t1 AT4G31500 27.168 173 122 2 49 219 28 198 2.17e-15 75.9
MS.gene41486.t1 AT3G52970 23.952 167 119 2 24 187 10 171 7.39e-15 74.3
MS.gene41486.t1 AT4G37430 24.696 247 161 8 22 256 2 235 8.22e-15 73.9
MS.gene41486.t1 AT3G52970 23.952 167 119 2 24 187 10 171 8.95e-15 73.9
MS.gene41486.t1 AT4G20240 34.646 127 80 2 46 172 29 152 1.12e-14 73.6
MS.gene41486.t1 AT3G26330 25.373 201 140 4 51 251 32 222 1.19e-14 73.6
MS.gene41486.t1 AT4G20240 34.921 126 79 2 47 172 30 152 1.49e-14 73.2
MS.gene41486.t1 AT5G24950 25.116 215 142 5 47 257 29 228 1.90e-14 73.2
MS.gene41486.t1 AT3G26150 28.931 159 98 3 22 177 8 154 1.97e-14 73.2
MS.gene41486.t1 AT4G37310 24.380 242 167 8 22 257 5 236 1.99e-14 73.2
MS.gene41486.t1 AT3G26180 23.721 215 149 4 50 261 30 232 2.66e-14 72.8
MS.gene41486.t1 AT3G26320 25.822 213 124 6 51 251 32 222 2.86e-14 72.4
MS.gene41486.t1 AT5G24960 25.116 215 142 5 47 257 30 229 2.93e-14 72.4
MS.gene41486.t1 AT5G24960 24.651 215 143 5 47 257 30 229 3.15e-14 72.0
MS.gene41486.t1 AT3G26160 34.188 117 68 2 50 163 30 140 4.25e-14 72.0
MS.gene41486.t1 AT1G11610 25.234 214 143 5 47 257 30 229 7.25e-14 71.2
MS.gene41486.t1 AT1G11610 25.234 214 143 5 47 257 30 229 7.54e-14 71.2
MS.gene41486.t1 AT3G20140 35.252 139 73 5 50 182 42 169 8.32e-14 71.2
MS.gene41486.t1 AT2G40890 24.359 234 161 4 28 254 5 229 9.37e-14 70.9
MS.gene41486.t1 AT3G26830 28.931 159 110 1 45 203 23 178 1.17e-13 70.9
MS.gene41486.t1 AT5G57260 25.243 206 138 4 49 251 29 221 2.04e-13 70.1
MS.gene41486.t1 AT3G48280 28.931 159 104 2 22 177 2 154 2.09e-13 70.1
MS.gene41486.t1 AT2G23220 25.225 222 158 7 36 254 32 248 2.92e-13 69.7
MS.gene41486.t1 AT4G37360 28.095 210 143 6 47 253 27 231 2.98e-13 69.3
MS.gene41486.t1 AT3G26300 24.424 217 147 4 46 258 27 230 3.13e-13 69.3
MS.gene41486.t1 AT3G26270 30.000 130 82 2 46 172 28 151 3.81e-13 69.3
MS.gene41486.t1 AT2G30750 30.070 143 91 3 38 177 21 157 4.79e-13 68.9
MS.gene41486.t1 AT1G13080 32.164 171 100 5 25 189 3 163 7.46e-13 68.2
MS.gene41486.t1 AT5G04330 33.628 113 72 2 51 163 33 142 7.82e-13 68.2
MS.gene41486.t1 AT4G13290 27.189 217 139 6 46 257 29 231 1.01e-12 67.8
MS.gene41486.t1 AT3G26170 22.449 245 166 5 20 261 9 232 1.29e-12 67.8
MS.gene41486.t1 AT5G06900 25.207 242 165 6 23 260 7 236 1.31e-12 67.8
MS.gene41486.t1 AT5G06905 25.688 218 146 6 44 258 25 229 1.82e-12 67.0
MS.gene41486.t1 AT3G28740 27.570 214 145 7 45 254 34 241 2.90e-12 66.6
MS.gene41486.t1 AT3G48290 29.143 175 111 5 46 216 29 194 3.51e-12 66.2
MS.gene41486.t1 AT4G37330 28.796 191 117 8 41 221 22 203 3.56e-12 66.2
MS.gene41486.t1 AT3G48290 29.143 175 111 5 46 216 29 194 3.61e-12 66.2
MS.gene41486.t1 AT2G30770 30.370 135 85 3 46 177 29 157 3.64e-12 66.2
MS.gene41486.t1 AT3G26310 23.585 212 128 4 52 251 32 221 3.86e-12 66.2
MS.gene41486.t1 AT3G26220 22.034 236 162 5 20 252 5 221 4.21e-12 66.2
MS.gene41486.t1 AT4G15360 25.221 226 150 5 18 237 9 221 5.05e-12 65.9
MS.gene41486.t1 AT3G10560 28.022 182 126 4 11 190 10 188 5.08e-12 65.9
MS.gene41486.t1 AT4G13310 25.352 213 140 7 50 257 32 230 6.73e-12 65.5
MS.gene41486.t1 AT4G13310 25.352 213 140 7 50 257 32 230 8.31e-12 65.1
MS.gene41486.t1 AT3G26210 28.082 146 93 1 87 232 65 198 1.06e-11 64.7
MS.gene41486.t1 AT5G35715 25.000 124 93 0 90 213 3 126 1.42e-11 64.3
MS.gene41486.t1 AT1G13100 35.227 88 57 0 90 177 62 149 1.51e-11 64.3
MS.gene41486.t1 AT3G48320 24.895 237 149 6 31 257 6 223 1.75e-11 64.3
MS.gene41486.t1 AT2G24180 25.604 207 134 7 50 251 36 227 2.35e-11 63.9
MS.gene41486.t1 AT2G02580 23.043 230 166 4 22 251 4 222 4.23e-11 63.2
MS.gene41486.t1 AT1G50520 27.222 180 122 4 20 192 8 185 4.61e-11 63.2
MS.gene41486.t1 AT3G20110 27.381 168 111 3 12 176 1 160 6.92e-11 62.4
MS.gene41486.t1 AT3G26290 23.423 222 142 5 39 251 20 222 8.55e-11 62.0
MS.gene41486.t1 AT3G26290 23.423 222 142 5 39 251 33 235 8.66e-11 62.0
MS.gene41486.t1 AT3G48310 31.111 135 84 2 46 177 28 156 9.03e-11 62.0
MS.gene41486.t1 AT3G20080 31.034 145 85 4 45 182 33 169 9.77e-11 62.0
MS.gene41486.t1 AT3G20080 31.034 145 85 4 45 182 33 169 9.77e-11 62.0

Find 62 sgRNAs with CRISPR-Local

Find 69 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTTGTTTGCAAGCATTTC+AGG 0.232153 3.1:-51653557 None:intergenic
CTCAGTAATGTAGCATCTTA+TGG 0.249041 3.1:-51653474 None:intergenic
ATCAATGGCTTCAAGATAAA+AGG 0.254882 3.1:+51653852 MS.gene41486:CDS
GGTTACCATCCCAGTCCTTT+TGG 0.266372 3.1:+51653408 MS.gene41486:CDS
ATTTCACTAGCTAGGCTTAT+TGG 0.278371 3.1:-51653728 None:intergenic
GCAATGGAGGGAAAAGTAAC+AGG 0.351027 3.1:-51653662 None:intergenic
GACTTAGATGCATGGTCATA+AGG 0.379157 3.1:+51654136 MS.gene41486:CDS
GGATGGAGGGCCTGGTCTTA+AGG 0.386643 3.1:+51654024 MS.gene41486:CDS
ACCAACTATAGGCAATGGTT+TGG 0.432042 3.1:-51653528 None:intergenic
CCAACTATAGGCAATGGTTT+GGG 0.432686 3.1:-51653527 None:intergenic
AATACAAGGTACTTTGGAAA+AGG 0.435545 3.1:+51653995 MS.gene41486:CDS
TCAGGAAGATTACCAACTAT+AGG 0.436534 3.1:-51653539 None:intergenic
CACATAAAACATAAGATTGT+CGG 0.438363 3.1:-51653885 None:intergenic
ATAGGCAATGGTTTGGGACC+AGG 0.446943 3.1:-51653521 None:intergenic
TTGTGTATCCACCTAGCTGC+AGG 0.449285 3.1:-51653578 None:intergenic
TCTCTCCACACAGGCATCAA+TGG 0.449375 3.1:+51653837 MS.gene41486:CDS
TCTCAAGAATTCACGGGCAA+TGG 0.468248 3.1:-51653678 None:intergenic
GCTAGTGAAATCATCTCAAA+TGG 0.469957 3.1:+51653740 MS.gene41486:CDS
GGTATGAAGGATGGAGGGCC+TGG 0.474805 3.1:+51654016 MS.gene41486:CDS
ACTTAGATGCATGGTCATAA+GGG 0.485663 3.1:+51654137 MS.gene41486:CDS
CCCAAACCATTGCCTATAGT+TGG 0.486285 3.1:+51653527 MS.gene41486:CDS
TGAAGAAAAGCCAAAAGGAC+TGG 0.486519 3.1:-51653418 None:intergenic
ACCTCAATTCTTGTACCCTA+TGG 0.492138 3.1:+51653770 MS.gene41486:CDS
TTGAGATGATTTCACTAGCT+AGG 0.511912 3.1:-51653736 None:intergenic
CAAGAATTCACGGGCAATGG+AGG 0.515153 3.1:-51653675 None:intergenic
ATCAATGAAGAAAAGCCAAA+AGG 0.516605 3.1:-51653423 None:intergenic
ATGGTGGCCTTGTCAATGTA+AGG 0.517075 3.1:+51653924 MS.gene41486:CDS
ATTACACTACTAGTTTCCTC+TGG 0.518614 3.1:+51653387 MS.gene41486:CDS
TTTGGAAAAGGTATGAAGGA+TGG 0.527712 3.1:+51654007 MS.gene41486:CDS
GAAGAAAAGCCAAAAGGACT+GGG 0.531137 3.1:-51653417 None:intergenic
TAGGCAATGGTTTGGGACCA+GGG 0.535787 3.1:-51653520 None:intergenic
GTACTTTGGAAAAGGTATGA+AGG 0.540038 3.1:+51654003 MS.gene41486:CDS
AAGTCAAGTAACCTCAAGCA+TGG 0.541430 3.1:-51654118 None:intergenic
GGATAACATGGACATTTCCT+AGG 0.543053 3.1:-51653640 None:intergenic
TAGGTGGATACACAAGACTA+TGG 0.562046 3.1:+51653586 MS.gene41486:CDS
AAGAATTCACGGGCAATGGA+GGG 0.574348 3.1:-51653674 None:intergenic
GAAAAGTAACAGGGATAACA+TGG 0.576288 3.1:-51653652 None:intergenic
ATTGCTACTCAACATTATTG+TGG 0.576812 3.1:+51653947 MS.gene41486:CDS
GCCATAGGGTACAAGAATTG+AGG 0.578397 3.1:-51653771 None:intergenic
AGATTACCAACTATAGGCAA+TGG 0.578490 3.1:-51653533 None:intergenic
AGGCAATGGTTTGGGACCAG+GGG 0.589217 3.1:-51653519 None:intergenic
CTGATTATATCCCATGCTTG+AGG 0.589495 3.1:+51654107 MS.gene41486:CDS
GAAATAGCACGTATCCGCCT+AGG 0.590425 3.1:+51653623 MS.gene41486:CDS
GGAAAAGGTATGAAGGATGG+AGG 0.601161 3.1:+51654010 MS.gene41486:CDS
TTGCAAACAAACCTGCAGCT+AGG 0.602841 3.1:+51653567 MS.gene41486:CDS
TTGTACCCTATGGCGAACAA+TGG 0.607756 3.1:+51653780 MS.gene41486:CDS
TGTTTGAGAATGATTTGCGA+AGG 0.608803 3.1:+51653359 None:intergenic
AGTCAAGTAACCTCAAGCAT+GGG 0.619137 3.1:-51654117 None:intergenic
TGTTCAACTTCCTTAAGACC+AGG 0.619973 3.1:-51654034 None:intergenic
AAGATTTGTTCTCTCCACAC+AGG 0.621068 3.1:+51653828 MS.gene41486:CDS
GGTTACTTGACTTAGATGCA+TGG 0.624272 3.1:+51654128 MS.gene41486:CDS
AAAAGCCAAAAGGACTGGGA+TGG 0.631073 3.1:-51653413 None:intergenic
CAAACAAACCTGCAGCTAGG+TGG 0.631866 3.1:+51653570 MS.gene41486:CDS
GAAAAGGTATGAAGGATGGA+GGG 0.635374 3.1:+51654011 MS.gene41486:CDS
GTGTACAACAAATGTAACAA+TGG 0.640902 3.1:+51653905 MS.gene41486:CDS
GGCAATGGTTTGGGACCAGG+GGG 0.644821 3.1:-51653518 None:intergenic
TAGCAATCCTTACATTGACA+AGG 0.660229 3.1:-51653931 None:intergenic
CAATGGAGGGAAAAGTAACA+GGG 0.667683 3.1:-51653661 None:intergenic
TGAAGCCATTGATGCCTGTG+TGG 0.690414 3.1:-51653842 None:intergenic
TACAACAAATGTAACAATGG+TGG 0.693075 3.1:+51653908 MS.gene41486:CDS
AGGACTGGGATGGTAACCAG+AGG 0.723034 3.1:-51653403 None:intergenic
TAACATGGACATTTCCTAGG+CGG 0.727704 3.1:-51653637 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAAAACTATTTTTCAATACA+AGG + chr3.1:51653981-51654000 MS.gene41486:CDS 20.0%
! CACATAAAACATAAGATTGT+CGG - chr3.1:51653888-51653907 None:intergenic 25.0%
!! TTCTTCATTGATATGCTTTT+TGG + chr3.1:51653434-51653453 MS.gene41486:CDS 25.0%
!!! TTTTTCAATACAAGGTACTT+TGG + chr3.1:51653989-51654008 MS.gene41486:CDS 25.0%
ATCAATGAAGAAAAGCCAAA+AGG - chr3.1:51653426-51653445 None:intergenic 30.0%
ATCAATGGCTTCAAGATAAA+AGG + chr3.1:51653852-51653871 MS.gene41486:CDS 30.0%
ATTGCTACTCAACATTATTG+TGG + chr3.1:51653947-51653966 MS.gene41486:CDS 30.0%
GTGTACAACAAATGTAACAA+TGG + chr3.1:51653905-51653924 MS.gene41486:CDS 30.0%
TACAACAAATGTAACAATGG+TGG + chr3.1:51653908-51653927 MS.gene41486:CDS 30.0%
! AATACAAGGTACTTTGGAAA+AGG + chr3.1:51653995-51654014 MS.gene41486:CDS 30.0%
! ATGTTTTCTCAAGAATTCAC+GGG - chr3.1:51653687-51653706 None:intergenic 30.0%
! CATGTTTTCTCAAGAATTCA+CGG - chr3.1:51653688-51653707 None:intergenic 30.0%
AGATTACCAACTATAGGCAA+TGG - chr3.1:51653536-51653555 None:intergenic 35.0%
ATTTCACTAGCTAGGCTTAT+TGG - chr3.1:51653731-51653750 None:intergenic 35.0%
CTCAGTAATGTAGCATCTTA+TGG - chr3.1:51653477-51653496 None:intergenic 35.0%
GAAAAGTAACAGGGATAACA+TGG - chr3.1:51653655-51653674 None:intergenic 35.0%
GCTAGTGAAATCATCTCAAA+TGG + chr3.1:51653740-51653759 MS.gene41486:CDS 35.0%
TAGCAATCCTTACATTGACA+AGG - chr3.1:51653934-51653953 None:intergenic 35.0%
TCAGGAAGATTACCAACTAT+AGG - chr3.1:51653542-51653561 None:intergenic 35.0%
TTGAGATGATTTCACTAGCT+AGG - chr3.1:51653739-51653758 None:intergenic 35.0%
! ATTACACTACTAGTTTCCTC+TGG + chr3.1:51653387-51653406 MS.gene41486:CDS 35.0%
! GTACTTTGGAAAAGGTATGA+AGG + chr3.1:51654003-51654022 MS.gene41486:CDS 35.0%
! TTTGGAAAAGGTATGAAGGA+TGG + chr3.1:51654007-51654026 MS.gene41486:CDS 35.0%
! TTTTTCCATTGTTCGCCATA+GGG - chr3.1:51653788-51653807 None:intergenic 35.0%
AAGTCAAGTAACCTCAAGCA+TGG - chr3.1:51654121-51654140 None:intergenic 40.0%
ACCAACTATAGGCAATGGTT+TGG - chr3.1:51653531-51653550 None:intergenic 40.0%
ACCTCAATTCTTGTACCCTA+TGG + chr3.1:51653770-51653789 MS.gene41486:CDS 40.0%
AGTCAAGTAACCTCAAGCAT+GGG - chr3.1:51654120-51654139 None:intergenic 40.0%
CAATGGAGGGAAAAGTAACA+GGG - chr3.1:51653664-51653683 None:intergenic 40.0%
CCAACTATAGGCAATGGTTT+GGG - chr3.1:51653530-51653549 None:intergenic 40.0%
CTGATTATATCCCATGCTTG+AGG + chr3.1:51654107-51654126 MS.gene41486:CDS 40.0%
GAAGAAAAGCCAAAAGGACT+GGG - chr3.1:51653420-51653439 None:intergenic 40.0%
GGATAACATGGACATTTCCT+AGG - chr3.1:51653643-51653662 None:intergenic 40.0%
GGTTACTTGACTTAGATGCA+TGG + chr3.1:51654128-51654147 MS.gene41486:CDS 40.0%
TAACATGGACATTTCCTAGG+CGG - chr3.1:51653640-51653659 None:intergenic 40.0%
TAGGTGGATACACAAGACTA+TGG + chr3.1:51653586-51653605 MS.gene41486:CDS 40.0%
TGAAGAAAAGCCAAAAGGAC+TGG - chr3.1:51653421-51653440 None:intergenic 40.0%
TGTTCAACTTCCTTAAGACC+AGG - chr3.1:51654037-51654056 None:intergenic 40.0%
! AAGATTTGTTCTCTCCACAC+AGG + chr3.1:51653828-51653847 MS.gene41486:CDS 40.0%
! CTTTTTCCATTGTTCGCCAT+AGG - chr3.1:51653789-51653808 None:intergenic 40.0%
! GAAAAGGTATGAAGGATGGA+GGG + chr3.1:51654011-51654030 MS.gene41486:CDS 40.0%
! GGTTTGTTTGCAAGCATTTC+AGG - chr3.1:51653560-51653579 None:intergenic 40.0%
AAAAGCCAAAAGGACTGGGA+TGG - chr3.1:51653416-51653435 None:intergenic 45.0%
AACAAACCTAAACTTCCCCC+TGG + chr3.1:51653503-51653522 MS.gene41486:CDS 45.0%
AAGAATTCACGGGCAATGGA+GGG - chr3.1:51653677-51653696 None:intergenic 45.0%
CCCAAACCATTGCCTATAGT+TGG + chr3.1:51653527-51653546 MS.gene41486:CDS 45.0%
GCAATGGAGGGAAAAGTAAC+AGG - chr3.1:51653665-51653684 None:intergenic 45.0%
GCCATAGGGTACAAGAATTG+AGG - chr3.1:51653774-51653793 None:intergenic 45.0%
TCTCAAGAATTCACGGGCAA+TGG - chr3.1:51653681-51653700 None:intergenic 45.0%
TTGCAAACAAACCTGCAGCT+AGG + chr3.1:51653567-51653586 MS.gene41486:CDS 45.0%
TTGTACCCTATGGCGAACAA+TGG + chr3.1:51653780-51653799 MS.gene41486:CDS 45.0%
! GGAAAAGGTATGAAGGATGG+AGG + chr3.1:51654010-51654029 MS.gene41486:CDS 45.0%
! GGGGGAAGTTTAGGTTTGTT+AGG - chr3.1:51653503-51653522 None:intergenic 45.0%
!! ATGGTGGCCTTGTCAATGTA+AGG + chr3.1:51653924-51653943 MS.gene41486:CDS 45.0%
CAAACAAACCTGCAGCTAGG+TGG + chr3.1:51653570-51653589 MS.gene41486:CDS 50.0%
CAAGAATTCACGGGCAATGG+AGG - chr3.1:51653678-51653697 None:intergenic 50.0%
GAAATAGCACGTATCCGCCT+AGG + chr3.1:51653623-51653642 MS.gene41486:CDS 50.0%
TCTCTCCACACAGGCATCAA+TGG + chr3.1:51653837-51653856 MS.gene41486:CDS 50.0%
TGAAGCCATTGATGCCTGTG+TGG - chr3.1:51653845-51653864 None:intergenic 50.0%
TTGTGTATCCACCTAGCTGC+AGG - chr3.1:51653581-51653600 None:intergenic 50.0%
! ATAGGCAATGGTTTGGGACC+AGG - chr3.1:51653524-51653543 None:intergenic 50.0%
! GGTTACCATCCCAGTCCTTT+TGG + chr3.1:51653408-51653427 MS.gene41486:CDS 50.0%
! TAGGCAATGGTTTGGGACCA+GGG - chr3.1:51653523-51653542 None:intergenic 50.0%
AGGACTGGGATGGTAACCAG+AGG - chr3.1:51653406-51653425 None:intergenic 55.0%
TTGGGACCAGGGGGAAGTTT+AGG - chr3.1:51653512-51653531 None:intergenic 55.0%
! AGGCAATGGTTTGGGACCAG+GGG - chr3.1:51653522-51653541 None:intergenic 55.0%
GGTATGAAGGATGGAGGGCC+TGG + chr3.1:51654016-51654035 MS.gene41486:CDS 60.0%
! GGCAATGGTTTGGGACCAGG+GGG - chr3.1:51653521-51653540 None:intergenic 60.0%
!! GGATGGAGGGCCTGGTCTTA+AGG + chr3.1:51654024-51654043 MS.gene41486:CDS 60.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 51653368 51654156 51653368 ID=MS.gene41486
chr3.1 mRNA 51653368 51654156 51653368 ID=MS.gene41486.t1;Parent=MS.gene41486
chr3.1 exon 51653368 51654156 51653368 ID=MS.gene41486.t1.exon1;Parent=MS.gene41486.t1
chr3.1 CDS 51653368 51654156 51653368 ID=cds.MS.gene41486.t1;Parent=MS.gene41486.t1
Gene Sequence

>MS.gene41486

ATGATTTGCGAAGGTATGAATTACACTACTAGTTTCCTCTGGTTACCATCCCAGTCCTTTTGGCTTTTCTTCATTGATATGCTTTTTGGCTTGATGATAATCAAAACCATAAGATGCTACATTACTGAGAATCCTAACAAACCTAAACTTCCCCCTGGTCCCAAACCATTGCCTATAGTTGGTAATCTTCCTGAAATGCTTGCAAACAAACCTGCAGCTAGGTGGATACACAAGACTATGGAAGAATTGAACACTGAAATAGCACGTATCCGCCTAGGAAATGTCCATGTTATCCCTGTTACTTTTCCCTCCATTGCCCGTGAATTCTTGAGAAAACATGATGCTGATTTTGCATCAAGACCAATAAGCCTAGCTAGTGAAATCATCTCAAATGGCTACATGACCTCAATTCTTGTACCCTATGGCGAACAATGGAAAAAGATGAAGAAAATTATTGTTAAAGATTTGTTCTCTCCACACAGGCATCAATGGCTTCAAGATAAAAGGAACGAAGAAGCCGACAATCTTATGTTTTATGTGTACAACAAATGTAACAATGGTGGCCTTGTCAATGTAAGGATTGCTACTCAACATTATTGTGGTAATGTGTATAGAAAACTATTTTTCAATACAAGGTACTTTGGAAAAGGTATGAAGGATGGAGGGCCTGGTCTTAAGGAAGTTGAACATGTTGATGCTGCTTTTGTATTGCTTAACTGTGTTTTAGCTTTCTCTGCATCTGATTATATCCCATGCTTGAGGTTACTTGACTTAGATGCATGGTCATAA
Protein sequence

>MS.gene41486.t1

MICEGMNYTTSFLWLPSQSFWLFFIDMLFGLMIIKTIRCYITENPNKPKLPPGPKPLPIVGNLPEMLANKPAARWIHKTMEELNTEIARIRLGNVHVIPVTFPSIAREFLRKHDADFASRPISLASEIISNGYMTSILVPYGEQWKKMKKIIVKDLFSPHRHQWLQDKRNEEADNLMFYVYNKCNNGGLVNVRIATQHYCGNVYRKLFFNTRYFGKGMKDGGPGLKEVEHVDAAFVLLNCVLAFSASDYIPCLRLLDLDAWS