Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049720.t1 | XP_003600583.1 | 79.9 | 159 | 10 | 2 | 1 | 137 | 139 | 297 | 1.80E-57 | 231.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049720.t1 | G7J777 | 79.9 | 159 | 10 | 2 | 1 | 137 | 139 | 297 | 1.3e-57 | 231.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049720 | MS.gene053166 | 0.808548 | 2.93E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 0 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACACAAATATCTTAATTTAT+GGG | - | 24187:1635-1654 | MS.gene049720:intron | 15.0% |
| !! | TTCAAAAAACAAATGATTTA+CGG | + | 24187:2029-2048 | MS.gene049720:intergenic | 15.0% |
| !!! | TGTTTTAATATAAGTTTCTT+TGG | - | 24187:3068-3087 | MS.gene049720:intron | 15.0% |
| !! | AAGAAGAATATCAAATACAA+AGG | + | 24187:3174-3193 | MS.gene049720:intergenic | 20.0% |
| !! | AATAAAATTATATCATACCG+TGG | + | 24187:3532-3551 | MS.gene049720:intergenic | 20.0% |
| !! | ACATTTGTTTACTAAATTAC+CGG | + | 24187:1434-1453 | MS.gene049720:intergenic | 20.0% |
| !! | ATATTATTAGTAGCTGTTAA+AGG | - | 24187:4158-4177 | MS.gene049720:intron | 20.0% |
| !! | GACACAAATATCTTAATTTA+TGG | - | 24187:1634-1653 | MS.gene049720:intron | 20.0% |
| !! | TGTAAAACCATTAAAATACA+GGG | - | 24187:1236-1255 | MS.gene049720:intron | 20.0% |
| !! | TTAAAAAAAAAGTAGAAGAG+TGG | - | 24187:4032-4051 | MS.gene049720:intron | 20.0% |
| !! | TTGTAAAACCATTAAAATAC+AGG | - | 24187:1235-1254 | MS.gene049720:intron | 20.0% |
| !! | TTTGTAATAACAATCAATCT+AGG | + | 24187:1078-1097 | MS.gene049720:intergenic | 20.0% |
| !!! | ATTGTTATTCATTTAATTCC+TGG | - | 24187:1106-1125 | MS.gene049720:intron | 20.0% |
| !!! | ATTTGATTTAATTTTTGCGT+TGG | - | 24187:3829-3848 | MS.gene049720:intron | 20.0% |
| !!! | CTTTTTTTTTTTTGTTAACC+CGG | + | 24187:1163-1182 | MS.gene049720:intergenic | 20.0% |
| !!! | GAACTTTATTTTATTCTACA+AGG | - | 24187:3148-3167 | MS.gene049720:intron | 20.0% |
| !!! | TATAATTGTTTTATGGTTGT+CGG | + | 24187:3472-3491 | MS.gene049720:intergenic | 20.0% |
| ! | AAAGCTCTATAACTACTATT+TGG | + | 24187:3660-3679 | MS.gene049720:intergenic | 25.0% |
| ! | AATAACTTAAATTGTGTCTC+AGG | - | 24187:2111-2130 | MS.gene049720:intron | 25.0% |
| ! | AATCATCTCTTATAAACTGA+AGG | - | 24187:1349-1368 | MS.gene049720:intron | 25.0% |
| ! | AATTATGCAGAATTACACAA+AGG | + | 24187:2997-3016 | MS.gene049720:intergenic | 25.0% |
| ! | ATCATCTCTTATAAACTGAA+GGG | - | 24187:1350-1369 | MS.gene049720:intron | 25.0% |
| ! | ATTATGCAGAATTACACAAA+GGG | + | 24187:2996-3015 | MS.gene049720:intergenic | 25.0% |
| ! | GAAAACTATTAGTTGGTTAA+TGG | + | 24187:3685-3704 | MS.gene049720:intergenic | 25.0% |
| ! | GAACAAAACATTATTACTTG+AGG | + | 24187:3110-3129 | MS.gene049720:intergenic | 25.0% |
| ! | TATAATTGCAATCAGTTTGT+TGG | - | 24187:2965-2984 | MS.gene049720:intron | 25.0% |
| ! | TTATGAAATTGCAAAGTTGA+TGG | - | 24187:2067-2086 | MS.gene049720:intron | 25.0% |
| ! | TTATTCATTTAATTCCTGGT+GGG | - | 24187:1110-1129 | MS.gene049720:intron | 25.0% |
| !! | ATAAATATTTGCTGGAGATA+AGG | + | 24187:4250-4269 | MS.gene049720:intergenic | 25.0% |
| !! | ATGGAAAATAGAATTTTGCA+AGG | - | 24187:1707-1726 | MS.gene049720:intron | 25.0% |
| !! | TAAATATTTGCTGGAGATAA+GGG | + | 24187:4249-4268 | MS.gene049720:intergenic | 25.0% |
| !! | TATGAAATTGCAAAGTTGAT+GGG | - | 24187:2068-2087 | MS.gene049720:intron | 25.0% |
| !! | TCTTAGAGTGTCATATATTT+AGG | + | 24187:986-1005 | MS.gene049720:intergenic | 25.0% |
| !!! | GATGTAAATCGCTTTTTAAT+GGG | - | 24187:2586-2605 | MS.gene049720:intron | 25.0% |
| !!! | GGCTTCTTATAATTGTTTTA+TGG | + | 24187:3479-3498 | MS.gene049720:intergenic | 25.0% |
| !!! | TCATTTGTTTTTTGAATGAG+CGG | - | 24187:2033-2052 | MS.gene049720:intron | 25.0% |
| AACTGCAGAAAACTATTAGT+TGG | + | 24187:3692-3711 | MS.gene049720:intergenic | 30.0% | |
| AAGGATGATCAAAGTTGTAT+CGG | - | 24187:1981-2000 | MS.gene049720:intron | 30.0% | |
| AATACTATGGTTGAAAACGA+TGG | + | 24187:3893-3912 | MS.gene049720:intergenic | 30.0% | |
| ATAGCCTATAGGTGTTAAAA+GGG | - | 24187:3318-3337 | MS.gene049720:intron | 30.0% | |
| ATTATGTTACAGTCTTACGT+TGG | - | 24187:2811-2830 | MS.gene049720:intron | 30.0% | |
| ATTTATGGGTAGAAAGAAAG+TGG | - | 24187:1649-1668 | MS.gene049720:intron | 30.0% | |
| CAATATCAGTTATAGCCTAT+AGG | - | 24187:3307-3326 | MS.gene049720:intron | 30.0% | |
| CTGCATACGTTCTTAAATAT+AGG | + | 24187:1460-1479 | MS.gene049720:intergenic | 30.0% | |
| GTATGTTGAACTTGTGAAAA+TGG | - | 24187:1507-1526 | MS.gene049720:intron | 30.0% | |
| GTCTCAATGATATCATAGAT+GGG | - | 24187:2681-2700 | MS.gene049720:intron | 30.0% | |
| GTTATTCATTTAATTCCTGG+TGG | - | 24187:1109-1128 | MS.gene049720:intron | 30.0% | |
| GTTTCAAATACTCTTTGTCA+TGG | - | 24187:2311-2330 | MS.gene049720:intron | 30.0% | |
| TAACGTTCTTAGATTTCCAA+GGG | - | 24187:2473-2492 | MS.gene049720:intron | 30.0% | |
| TATAGCCTATAGGTGTTAAA+AGG | - | 24187:3317-3336 | MS.gene049720:intron | 30.0% | |
| TCTCAATGATATCATAGATG+GGG | - | 24187:2682-2701 | MS.gene049720:intron | 30.0% | |
| TCTGCAATTTATTGAAAGGT+GGG | - | 24187:934-953 | MS.gene049720:CDS | 30.0% | |
| TGATGAACAATATCTTTGTC+AGG | - | 24187:3348-3367 | MS.gene049720:intron | 30.0% | |
| TGTCTCAATGATATCATAGA+TGG | - | 24187:2680-2699 | MS.gene049720:intron | 30.0% | |
| TTATGCAGAATTACACAAAG+GGG | + | 24187:2995-3014 | MS.gene049720:intergenic | 30.0% | |
| TTTATGGGTAGAAAGAAAGT+GGG | - | 24187:1650-1669 | MS.gene049720:intron | 30.0% | |
| ! | AAAAGAGTATACAACTTCCT+AGG | - | 24187:1178-1197 | MS.gene049720:intron | 30.0% |
| ! | CCACTAATAAAGATTTTGCA+CGG | + | 24187:2233-2252 | MS.gene049720:intergenic | 30.0% |
| ! | TGATGTTGTTTGCTTGTATT+TGG | - | 24187:2175-2194 | MS.gene049720:intron | 30.0% |
| ! | TTCAACCATAGTATTTTGTG+TGG | - | 24187:3898-3917 | MS.gene049720:intron | 30.0% |
| !! | GACAAAGAGTATTTGAAACT+AGG | + | 24187:2310-2329 | MS.gene049720:intergenic | 30.0% |
| !! | GTTAATCTGTTAGCTTGTTT+CGG | - | 24187:2333-2352 | MS.gene049720:intron | 30.0% |
| !!! | CGATGTAAATCGCTTTTTAA+TGG | - | 24187:2585-2604 | MS.gene049720:intron | 30.0% |
| !!! | CTTGAGGCTTTTTTTTCAAA+AGG | + | 24187:3094-3113 | MS.gene049720:intergenic | 30.0% |
| AAACAGAGAAACTTCTCGAT+GGG | - | 24187:3750-3769 | MS.gene049720:intron | 35.0% | |
| AACCAACTATCAAACGAAGA+AGG | - | 24187:3412-3431 | MS.gene049720:intron | 35.0% | |
| ACAACAAGTACATAGTGGTA+CGG | - | 24187:3777-3796 | MS.gene049720:intron | 35.0% | |
| ACCAACTATCAAACGAAGAA+GGG | - | 24187:3413-3432 | MS.gene049720:intron | 35.0% | |
| ACTACAAGCTTTCTGAATTC+CGG | - | 24187:1412-1431 | MS.gene049720:CDS | 35.0% | |
| AGGATTTGAATACGTTGGTA+TGG | - | 24187:1859-1878 | MS.gene049720:intron | 35.0% | |
| ATATGGAGAGAAAGCAATCA+AGG | - | 24187:2201-2220 | MS.gene049720:intron | 35.0% | |
| ATATTGCACATTGCCCTAAT+TGG | + | 24187:3293-3312 | MS.gene049720:intergenic | 35.0% | |
| ATTCTGTCCTGTACCAATTT+GGG | + | 24187:2430-2449 | MS.gene049720:intergenic | 35.0% | |
| CAATGGAGCTGAAGATTTAA+AGG | - | 24187:4202-4221 | MS.gene049720:intron | 35.0% | |
| CATAAGCTACCTGATATCAA+TGG | - | 24187:4185-4204 | MS.gene049720:intron | 35.0% | |
| CCGTGCAAAATCTTTATTAG+TGG | - | 24187:2230-2249 | MS.gene049720:intron | 35.0% | |
| CGGTATGATCTATTTATCTG+TGG | - | 24187:3797-3816 | MS.gene049720:intron | 35.0% | |
| CTCAATGATATCATAGATGG+GGG | - | 24187:2683-2702 | MS.gene049720:intron | 35.0% | |
| GAGATAAGGGATTTAAGCTT+TGG | + | 24187:4236-4255 | MS.gene049720:intergenic | 35.0% | |
| GGGTGTTTATAATGCAAGAA+AGG | - | 24187:2656-2675 | MS.gene049720:intron | 35.0% | |
| GGTGTCTGCAATTTATTGAA+AGG | - | 24187:930-949 | MS.gene049720:CDS | 35.0% | |
| GTAACGTTCTTAGATTTCCA+AGG | - | 24187:2472-2491 | MS.gene049720:intron | 35.0% | |
| GTCTGCAATTTATTGAAAGG+TGG | - | 24187:933-952 | MS.gene049720:CDS | 35.0% | |
| TAACCAAGTGATCATAGGAA+AGG | - | 24187:1962-1981 | MS.gene049720:intron | 35.0% | |
| TACGTTGGTATGGCATAATT+TGG | - | 24187:1869-1888 | MS.gene049720:intron | 35.0% | |
| TATAAACTGAAGGGTGAACT+TGG | - | 24187:1359-1378 | MS.gene049720:intron | 35.0% | |
| TATTGCACATTGCCCTAATT+GGG | + | 24187:3292-3311 | MS.gene049720:intergenic | 35.0% | |
| TGAACAATATCTTTGTCAGG+TGG | - | 24187:3351-3370 | MS.gene049720:intron | 35.0% | |
| TGTGAAGGATTTGAATACGT+TGG | - | 24187:1854-1873 | MS.gene049720:intron | 35.0% | |
| TGTGGAAGGAAGATAAAGTA+GGG | - | 24187:1778-1797 | MS.gene049720:CDS | 35.0% | |
| TTAGCGAAAATTCAGTAGAG+TGG | - | 24187:1755-1774 | MS.gene049720:CDS | 35.0% | |
| TTATGGGTAGAAAGAAAGTG+GGG | - | 24187:1651-1670 | MS.gene049720:intron | 35.0% | |
| TTCATTCCTTCTCCCAATTA+GGG | - | 24187:3277-3296 | MS.gene049720:intron | 35.0% | |
| TTGATTGCTTTCTCTCCATA+TGG | + | 24187:2202-2221 | MS.gene049720:intergenic | 35.0% | |
| TTGCTTGTATTTGGTCCATA+TGG | - | 24187:2184-2203 | MS.gene049720:intron | 35.0% | |
| TTGGTTAGCAAAGTTCACTT+TGG | + | 24187:1949-1968 | MS.gene049720:intergenic | 35.0% | |
| TTTGCTAACCAAGTGATCAT+AGG | - | 24187:1957-1976 | MS.gene049720:intron | 35.0% | |
| ! | AGCCTATCTTTTGTTAAGGA+AGG | - | 24187:1818-1837 | MS.gene049720:intron | 35.0% |
| ! | AGTCAGCCTATCTTTTGTTA+AGG | - | 24187:1814-1833 | MS.gene049720:intron | 35.0% |
| ! | GGTTGCTTCTCTTTTATGTT+GGG | - | 24187:2631-2650 | MS.gene049720:intron | 35.0% |
| ! | TGGTTGCTTCTCTTTTATGT+TGG | - | 24187:2630-2649 | MS.gene049720:intron | 35.0% |
| ! | TTTATCTCGATTTGCATGCA+AGG | + | 24187:4004-4023 | MS.gene049720:intergenic | 35.0% |
| !! | TCACACACCCTGTATTTTAA+TGG | + | 24187:1246-1265 | MS.gene049720:intergenic | 35.0% |
| !! | TTGTGCAGTTTTGTGTTCAA+TGG | - | 24187:2707-2726 | MS.gene049720:intron | 35.0% |
| !!! | AATCGCTTTTTAATGGGATG+TGG | - | 24187:2592-2611 | MS.gene049720:intron | 35.0% |
| !!! | ATTTTCGAGTTCCTAACTGT+TGG | - | 24187:2258-2277 | MS.gene049720:intron | 35.0% |
| AAGAACTGAGGTTAGAGAAG+TGG | - | 24187:2780-2799 | MS.gene049720:intron | 40.0% | |
| AGCCAGAGTTATGATAAGCT+TGG | - | 24187:3495-3514 | MS.gene049720:intron | 40.0% | |
| ATGTTACAGTCTTACGTTGG+TGG | - | 24187:2814-2833 | MS.gene049720:intron | 40.0% | |
| CAAACTCTGGATCAACATCA+TGG | - | 24187:3224-3243 | MS.gene049720:intron | 40.0% | |
| CAAGGATCCTATAGTAGAGT+TGG | - | 24187:1725-1744 | MS.gene049720:CDS | 40.0% | |
| CATCCTTTCCTATGATCACT+TGG | + | 24187:1968-1987 | MS.gene049720:intergenic | 40.0% | |
| CCACTCCACACAAAATACTA+TGG | + | 24187:3906-3925 | MS.gene049720:intergenic | 40.0% | |
| CGCCTTCCTTAACAAAAGAT+AGG | + | 24187:1823-1842 | MS.gene049720:intergenic | 40.0% | |
| CTCTGCATAATTATGCAGCA+CGG | - | 24187:2854-2873 | MS.gene049720:intron | 40.0% | |
| GAAAATTCAGTAGAGTGGTG+TGG | - | 24187:1760-1779 | MS.gene049720:CDS | 40.0% | |
| GAAACAGAGAAACTTCTCGA+TGG | - | 24187:3749-3768 | MS.gene049720:intron | 40.0% | |
| GATTCTGTCCTGTACCAATT+TGG | + | 24187:2431-2450 | MS.gene049720:intergenic | 40.0% | |
| GATTGTCTTGTGAAGAACTG+AGG | - | 24187:2768-2787 | MS.gene049720:intron | 40.0% | |
| GTCTGACAACAAGTACATAG+TGG | - | 24187:3772-3791 | MS.gene049720:intron | 40.0% | |
| GTGGTAGAGTTATACGTTGA+CGG | - | 24187:4051-4070 | MS.gene049720:intron | 40.0% | |
| GTGTGGAAGGAAGATAAAGT+AGG | - | 24187:1777-1796 | MS.gene049720:CDS | 40.0% | |
| GTTCATTCCTTCTCCCAATT+AGG | - | 24187:3276-3295 | MS.gene049720:intron | 40.0% | |
| TATGGGTAGAAAGAAAGTGG+GGG | - | 24187:1652-1671 | MS.gene049720:intron | 40.0% | |
| TCCTATAGTAGAGTTGGATG+AGG | - | 24187:1731-1750 | MS.gene049720:CDS | 40.0% | |
| TCTTCAGCTCCATTGATATC+AGG | + | 24187:4197-4216 | MS.gene049720:intergenic | 40.0% | |
| TGCCAAGCTTATCATAACTC+TGG | + | 24187:3500-3519 | MS.gene049720:intergenic | 40.0% | |
| ! | CAAAAGCTGCTAGCTTCAAT+GGG | + | 24187:1896-1915 | MS.gene049720:intergenic | 40.0% |
| ! | CAAAGTTGTATCGGTGAATG+TGG | - | 24187:1990-2009 | MS.gene049720:intron | 40.0% |
| ! | CCATAGTATTTTGTGTGGAG+TGG | - | 24187:3903-3922 | MS.gene049720:intron | 40.0% |
| ! | CTTCTCTTTTATGTTGGGTG+GGG | - | 24187:2636-2655 | MS.gene049720:intron | 40.0% |
| ! | GCTTCTCTTTTATGTTGGGT+GGG | - | 24187:2635-2654 | MS.gene049720:intron | 40.0% |
| ! | GTGACCCTTTTAACACCTAT+AGG | + | 24187:3325-3344 | MS.gene049720:intergenic | 40.0% |
| ! | TAATGAGTAAGCACTAGCCT+AGG | + | 24187:1198-1217 | MS.gene049720:intergenic | 40.0% |
| ! | TACGTTGACGGACAACTTAA+TGG | - | 24187:4063-4082 | MS.gene049720:intron | 40.0% |
| ! | TGATGGGTGTTTCACAAAGA+GGG | - | 24187:2084-2103 | MS.gene049720:intron | 40.0% |
| ! | TGCTTCTCTTTTATGTTGGG+TGG | - | 24187:2634-2653 | MS.gene049720:intron | 40.0% |
| ! | TTGATGGGTGTTTCACAAAG+AGG | - | 24187:2083-2102 | MS.gene049720:intron | 40.0% |
| ! | TTTTTAATGGGATGTGGAGG+TGG | - | 24187:2598-2617 | MS.gene049720:intron | 40.0% |
| !! | ATGGACCTTGGTGTGAATTT+TGG | - | 24187:2730-2749 | MS.gene049720:intron | 40.0% |
| !! | GCAGTTTTGTGTTCAATGGA+TGG | - | 24187:2711-2730 | MS.gene049720:intron | 40.0% |
| !! | GTGAATTTTGGCAGCTTGTT+TGG | - | 24187:2742-2761 | MS.gene049720:intron | 40.0% |
| !! | TGTTAGCTTGTTTCGGACTT+GGG | - | 24187:2340-2359 | MS.gene049720:intron | 40.0% |
| !!! | TTTTAGTTTTGCAGGCCACT+TGG | - | 24187:2553-2572 | MS.gene049720:intron | 40.0% |
| AACTGAGGTTAGAGAAGTGG+TGG | - | 24187:2783-2802 | MS.gene049720:intron | 45.0% | |
| ACATTGCCCTAATTGGGAGA+AGG | + | 24187:3286-3305 | MS.gene049720:intergenic | 45.0% | |
| AGAGAAGGGAAGCAGTATGT+TGG | - | 24187:2507-2526 | MS.gene049720:intron | 45.0% | |
| AGCTGCCAAAATTCACACCA+AGG | + | 24187:2738-2757 | MS.gene049720:intergenic | 45.0% | |
| ATTCAGTAGAGTGGTGTGGA+AGG | - | 24187:1764-1783 | MS.gene049720:CDS | 45.0% | |
| CACGAATGCAACTTCAATGC+AGG | + | 24187:2882-2901 | MS.gene049720:intergenic | 45.0% | |
| CAGGGTGTGTGATCTCATTA+TGG | - | 24187:1254-1273 | MS.gene049720:intron | 45.0% | |
| CATCATGGTTACTGTGTAGC+AGG | - | 24187:3239-3258 | MS.gene049720:intron | 45.0% | |
| CCATTTCCAAGCCAACAGTT+AGG | + | 24187:2272-2291 | MS.gene049720:intergenic | 45.0% | |
| CTAAACTAGCCCACCCAAAT+TGG | - | 24187:2414-2433 | MS.gene049720:intron | 45.0% | |
| CTTAAACGAAGCAAGGACGA+TGG | - | 24187:3376-3395 | MS.gene049720:intron | 45.0% | |
| GACAGAGACAATGCAAACTC+TGG | - | 24187:3211-3230 | MS.gene049720:intron | 45.0% | |
| GCAATTGAAGAGATCCACTC+TGG | + | 24187:3978-3997 | MS.gene049720:intergenic | 45.0% | |
| GCCTCATCCAACTCTACTAT+AGG | + | 24187:1735-1754 | MS.gene049720:intergenic | 45.0% | |
| GCTAATACATCCTCTCGAGA+AGG | - | 24187:909-928 | MS.gene049720:CDS | 45.0% | |
| GCTTGGCAATGAAAACTCCA+CGG | - | 24187:3512-3531 | MS.gene049720:intron | 45.0% | |
| GGTGGATCTTAAACGAAGCA+AGG | - | 24187:3369-3388 | MS.gene049720:intron | 45.0% | |
| GTTACAATCAAGACTGCAGC+AGG | + | 24187:2457-2476 | MS.gene049720:intergenic | 45.0% | |
| TGGAAACGTGTGACTAGAGA+GGG | - | 24187:2930-2949 | MS.gene049720:intron | 45.0% | |
| TGTCCTGTACCAATTTGGGT+GGG | + | 24187:2426-2445 | MS.gene049720:intergenic | 45.0% | |
| TGTGTTCAATGGATGGACCT+TGG | - | 24187:2718-2737 | MS.gene049720:intron | 45.0% | |
| TGTTAAGGAAGGCGACTTGT+AGG | - | 24187:1829-1848 | MS.gene049720:intron | 45.0% | |
| TTCCTGGTGGGAACAATTCT+TGG | - | 24187:1122-1141 | MS.gene049720:intron | 45.0% | |
| TTGGTCAGGCTTTACTTAGC+CGG | - | 24187:1141-1160 | MS.gene049720:intron | 45.0% | |
| ! | ACATCGATTGAACTGCCAAG+TGG | + | 24187:2571-2590 | MS.gene049720:intergenic | 45.0% |
| ! | GAACAGTTTTCTTGCAGCTG+GGG | - | 24187:2529-2548 | MS.gene049720:intron | 45.0% |
| ! | GCAAAAGCTGCTAGCTTCAA+TGG | + | 24187:1897-1916 | MS.gene049720:intergenic | 45.0% |
| ! | GCCCTTCTTCGTTTGATAGT+TGG | + | 24187:3417-3436 | MS.gene049720:intergenic | 45.0% |
| ! | GGAACAGTTTTCTTGCAGCT+GGG | - | 24187:2528-2547 | MS.gene049720:intron | 45.0% |
| ! | GGAGGAGAAAGCTGTTTCAA+TGG | - | 24187:1688-1707 | MS.gene049720:intron | 45.0% |
| ! | GTATCGGTGAATGTGGCATA+TGG | - | 24187:1997-2016 | MS.gene049720:intron | 45.0% |
| ! | TGAAGCTAGCAGCTTTTGCT+AGG | - | 24187:1898-1917 | MS.gene049720:CDS | 45.0% |
| ! | TGGAACAGTTTTCTTGCAGC+TGG | - | 24187:2527-2546 | MS.gene049720:intron | 45.0% |
| !! | CCTAACTGTTGGCTTGGAAA+TGG | - | 24187:2269-2288 | MS.gene049720:intron | 45.0% |
| !! | CGCTTTTTAATGGGATGTGG+AGG | - | 24187:2595-2614 | MS.gene049720:intron | 45.0% |
| !! | CTGTTAGCTTGTTTCGGACT+TGG | - | 24187:2339-2358 | MS.gene049720:intron | 45.0% |
| !! | GGGTCTAGCTTAGTTTGCAT+CGG | - | 24187:2363-2382 | MS.gene049720:intron | 45.0% |
| !! | GTTAGCTTGTTTCGGACTTG+GGG | - | 24187:2341-2360 | MS.gene049720:intron | 45.0% |
| !! | TTAGCTTGTTTCGGACTTGG+GGG | - | 24187:2342-2361 | MS.gene049720:intron | 45.0% |
| !!! | CTTACGTTGGTGGCTTGTTT+TGG | - | 24187:2824-2843 | MS.gene049720:intron | 45.0% |
| AGTTGCATTCGTGCCGTGTT+AGG | - | 24187:2889-2908 | MS.gene049720:intron | 50.0% | |
| ATTGCAGACACCTTCTCGAG+AGG | + | 24187:922-941 | MS.gene049720:intergenic | 50.0% | |
| CTCCCATGCACATCCTAACA+CGG | + | 24187:2905-2924 | MS.gene049720:intergenic | 50.0% | |
| CTGTCCTGTACCAATTTGGG+TGG | + | 24187:2427-2446 | MS.gene049720:intergenic | 50.0% | |
| GACCAAGAATTGTTCCCACC+AGG | + | 24187:1127-1146 | MS.gene049720:intergenic | 50.0% | |
| GAGATCCACTCTGGTCGATA+CGG | + | 24187:3969-3988 | MS.gene049720:intergenic | 50.0% | |
| GGAAACGTGTGACTAGAGAG+GGG | - | 24187:2931-2950 | MS.gene049720:intron | 50.0% | |
| GGGTGTTTCACAAAGAGGGA+GGG | - | 24187:2088-2107 | MS.gene049720:intron | 50.0% | |
| GGTGGGAACAATTCTTGGTC+AGG | - | 24187:1127-1146 | MS.gene049720:intron | 50.0% | |
| GTGGAAACGTGTGACTAGAG+AGG | - | 24187:2929-2948 | MS.gene049720:intron | 50.0% | |
| TAGCCCACCCAAATTGGTAC+AGG | - | 24187:2420-2439 | MS.gene049720:intron | 50.0% | |
| TGCCGTGTTAGGATGTGCAT+GGG | - | 24187:2900-2919 | MS.gene049720:intron | 50.0% | |
| TGGGTGTTTCACAAAGAGGG+AGG | - | 24187:2087-2106 | MS.gene049720:intron | 50.0% | |
| TGGTCAGGCTTTACTTAGCC+GGG | - | 24187:1142-1161 | MS.gene049720:intron | 50.0% | |
| TGTGTCTCAGGCGTGATTCA+GGG | - | 24187:2123-2142 | MS.gene049720:intron | 50.0% | |
| TTGTGTCTCAGGCGTGATTC+AGG | - | 24187:2122-2141 | MS.gene049720:intron | 50.0% | |
| ! | AGCTAGCAGCTTTTGCTAGG+TGG | - | 24187:1901-1920 | MS.gene049720:CDS | 50.0% |
| ! | CGAGTTCCTAACTGTTGGCT+TGG | - | 24187:2263-2282 | MS.gene049720:intron | 50.0% |
| ! | GATTTCCAAGGGCTCGCTTT+TGG | - | 24187:2484-2503 | MS.gene049720:intron | 50.0% |
| !! | TAGCTTGTTTCGGACTTGGG+GGG | - | 24187:2343-2362 | MS.gene049720:intron | 50.0% |
| !!! | GCTGGGGCTTTTAGTTTTGC+AGG | - | 24187:2545-2564 | MS.gene049720:intron | 50.0% |
| CGTGTTAGGATGTGCATGGG+AGG | - | 24187:2903-2922 | MS.gene049720:intron | 55.0% | |
| GAAAGTGGGGGTGGTAGTTG+AGG | - | 24187:1664-1683 | MS.gene049720:intron | 55.0% | |
| GGATGTGCATGGGAGGAATG+TGG | - | 24187:2910-2929 | MS.gene049720:intron | 55.0% | |
| GGCGACTTGTAGGTCTGTGA+AGG | - | 24187:1839-1858 | MS.gene049720:intron | 55.0% | |
| GGGATGTGGAGGTGGTAGAA+GGG | - | 24187:2606-2625 | MS.gene049720:intron | 55.0% | |
| GGGTAGAAAGAAAGTGGGGG+TGG | - | 24187:1655-1674 | MS.gene049720:intron | 55.0% | |
| GTGCCGTGTTAGGATGTGCA+TGG | - | 24187:2899-2918 | MS.gene049720:intron | 55.0% | |
| TCTCAGGCGTGATTCAGGGT+GGG | - | 24187:2127-2146 | MS.gene049720:intron | 55.0% | |
| TCTCTCCAAAAGCGAGCCCT+TGG | + | 24187:2492-2511 | MS.gene049720:intergenic | 55.0% | |
| TGGGATGTGGAGGTGGTAGA+AGG | - | 24187:2605-2624 | MS.gene049720:intron | 55.0% | |
| ! | ACTCACCGTATCGACCAGAG+TGG | - | 24187:3961-3980 | MS.gene049720:intron | 55.0% |
| !! | AGGGCTCGCTTTTGGAGAGA+AGG | - | 24187:2492-2511 | MS.gene049720:intron | 55.0% |
| !! | GGGCTCGCTTTTGGAGAGAA+GGG | - | 24187:2493-2512 | MS.gene049720:intron | 55.0% |
| AGTGGGGGTGGTAGTTGAGG+TGG | - | 24187:1667-1686 | MS.gene049720:intron | 60.0% | |
| GTCTCAGGCGTGATTCAGGG+TGG | - | 24187:2126-2145 | MS.gene049720:intron | 60.0% | |
| TGTGGAGGTGGTAGAAGGGC+TGG | - | 24187:2610-2629 | MS.gene049720:intron | 60.0% | |
| GGGGGTGGTAGTTGAGGTGG+AGG | - | 24187:1670-1689 | MS.gene049720:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 24187 | gene | 896 | 4271 | 896 | ID=MS.gene049720 |
| 24187 | mRNA | 896 | 4271 | 896 | ID=MS.gene049720.t1;Parent=MS.gene049720 |
| 24187 | exon | 4216 | 4271 | 4216 | ID=MS.gene049720.t1.exon1;Parent=MS.gene049720.t1 |
| 24187 | CDS | 4216 | 4271 | 4216 | ID=cds.MS.gene049720.t1;Parent=MS.gene049720.t1 |
| 24187 | exon | 1896 | 1951 | 1896 | ID=MS.gene049720.t1.exon2;Parent=MS.gene049720.t1 |
| 24187 | CDS | 1896 | 1951 | 1896 | ID=cds.MS.gene049720.t1;Parent=MS.gene049720.t1 |
| 24187 | exon | 1709 | 1797 | 1709 | ID=MS.gene049720.t1.exon3;Parent=MS.gene049720.t1 |
| 24187 | CDS | 1709 | 1797 | 1709 | ID=cds.MS.gene049720.t1;Parent=MS.gene049720.t1 |
| 24187 | exon | 1374 | 1467 | 1374 | ID=MS.gene049720.t1.exon4;Parent=MS.gene049720.t1 |
| 24187 | CDS | 1374 | 1467 | 1374 | ID=cds.MS.gene049720.t1;Parent=MS.gene049720.t1 |
| 24187 | exon | 896 | 1012 | 896 | ID=MS.gene049720.t1.exon5;Parent=MS.gene049720.t1 |
| 24187 | CDS | 896 | 1012 | 896 | ID=cds.MS.gene049720.t1;Parent=MS.gene049720.t1 |
| Gene Sequence |
| Protein sequence |
