AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053166


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053166.t1 MTR_4g007980 98.261 460 8 0 1 460 1 460 0.0 936
MS.gene053166.t1 MTR_2g036510 28.224 411 249 17 32 431 216 591 1.87e-32 130
MS.gene053166.t1 MTR_2g036510 28.111 217 129 8 219 433 282 473 4.56e-15 78.2
MS.gene053166.t1 MTR_8g105590 27.139 409 254 15 32 431 238 611 4.36e-31 126
MS.gene053166.t1 MTR_1g084120 28.679 265 150 12 172 434 25 252 5.02e-16 80.9
MS.gene053166.t1 MTR_1g084120 29.487 312 179 16 118 427 25 297 1.95e-15 79.3
MS.gene053166.t1 MTR_2g019860 27.119 236 142 8 203 433 59 269 8.10e-13 71.2
MS.gene053166.t1 MTR_1g089370 26.441 295 182 11 153 435 8 279 2.62e-12 69.7
MS.gene053166.t1 MTR_1g090740 26.549 226 123 8 219 431 14 209 2.82e-12 68.9
MS.gene053166.t1 MTR_2g087530 27.458 295 155 13 172 435 81 347 5.34e-12 68.6
MS.gene053166.t1 MTR_2g087530 29.018 224 129 10 216 435 38 235 1.15e-11 67.4
MS.gene053166.t1 MTR_2g069030 26.877 253 148 12 120 366 20 241 2.10e-11 65.5
MS.gene053166.t1 MTR_1g492850 27.381 336 178 18 118 430 17 309 3.44e-11 65.5
MS.gene053166.t1 MTR_1g492850 27.381 336 178 18 118 430 17 309 3.88e-11 65.5
MS.gene053166.t1 MTR_4g109680 23.810 357 222 14 116 459 20 339 4.45e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053166.t1 AT1G51550 59.956 452 161 6 18 458 21 463 0.0 528
MS.gene053166.t1 AT2G18915 29.340 409 245 18 32 431 204 577 8.48e-36 140
MS.gene053166.t1 AT2G18915 29.584 409 244 18 32 431 214 587 1.28e-35 139
MS.gene053166.t1 AT5G57360 28.710 411 247 18 32 431 213 588 6.75e-33 132
MS.gene053166.t1 AT5G57360 28.710 411 247 18 32 431 213 588 8.43e-33 131
MS.gene053166.t1 AT1G68050 28.501 407 246 19 32 431 227 595 4.97e-32 129
MS.gene053166.t1 AT1G18610 25.648 347 208 16 118 451 22 331 1.83e-13 72.8
MS.gene053166.t1 AT1G18610 25.648 347 208 16 118 451 22 331 1.83e-13 72.8
MS.gene053166.t1 AT1G08420 28.475 295 152 13 172 435 102 368 2.04e-13 73.2
MS.gene053166.t1 AT1G08420 28.136 295 153 12 172 435 102 368 2.50e-13 72.8
MS.gene053166.t1 AT2G27210 27.458 295 155 13 172 435 91 357 4.89e-13 72.0
MS.gene053166.t1 AT2G27210 27.458 295 155 13 172 435 91 357 7.12e-13 71.6
MS.gene053166.t1 AT2G36360 28.739 341 176 20 118 430 17 318 9.77e-12 67.4
MS.gene053166.t1 AT2G36360 27.976 336 176 18 118 430 17 309 1.74e-11 66.6
MS.gene053166.t1 AT2G36360 27.976 336 176 18 118 430 17 309 1.77e-11 66.6
MS.gene053166.t1 AT2G36360 27.976 336 176 18 118 430 17 309 1.77e-11 66.6
MS.gene053166.t1 AT2G36360 27.381 336 178 17 118 430 17 309 1.91e-11 66.6

Find 109 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGGTAGGTTGTTAATTTA+TGG 0.139839 4.2:+91979971 MS.gene053166:CDS
GAGTGAGAAGCTCTTGCTTT+AGG 0.168448 4.2:-91978180 None:intergenic
GGTGATTTCCTTGTTCTCTT+TGG 0.218840 4.2:+91979452 MS.gene053166:CDS
GACTTCACGGCCTTCGTTTA+GGG 0.260841 4.2:+91979660 MS.gene053166:CDS
GCTTCATGATGTATGGTTAT+TGG 0.269291 4.2:+91979841 MS.gene053166:CDS
GGACTTCACGGCCTTCGTTT+AGG 0.277584 4.2:+91979659 MS.gene053166:CDS
GTTCAACCTGTTGAACCTTC+TGG 0.284085 4.2:+91980211 MS.gene053166:CDS
TCTTGAGGTATGTTGGTTAT+TGG 0.294095 4.2:-91977877 None:intergenic
AGTGAGAAGCTCTTGCTTTA+GGG 0.320830 4.2:-91978179 None:intergenic
AGAGAAAGAATTGCATCTAT+AGG 0.321173 4.2:-91977928 None:intergenic
TCTGACTGTCTTGTCTTGTT+TGG 0.342606 4.2:+91978216 MS.gene053166:CDS
ATGGTAATCCATGGAGGAAT+TGG 0.346210 4.2:+91979638 MS.gene053166:CDS
CCTGTTGAACCTTCTGGACT+TGG 0.354019 4.2:+91980217 MS.gene053166:CDS
TTTGTATGTGTTTGGTGGAA+TGG 0.359174 4.2:+91980177 MS.gene053166:CDS
TGACTTGCATTGGAAGAAAT+AGG 0.362144 4.2:+91979780 MS.gene053166:CDS
GGCATACCAAGTGGAAGATT+TGG 0.363811 4.2:+91979410 MS.gene053166:CDS
TTTGAACTTGCCGTGGTTGA+AGG 0.370574 4.2:-91980055 None:intergenic
GGTCGTTATTTGTATGTGTT+TGG 0.379139 4.2:+91980169 MS.gene053166:CDS
GAGAAAGAATTGCATCTATA+GGG 0.385396 4.2:-91977927 None:intergenic
TCTTCCATTTCAATATTCTC+TGG 0.397428 4.2:-91979376 None:intergenic
CGTGCCTGCGTAGATCCTTC+TGG 0.398486 4.2:+91980148 MS.gene053166:CDS
GACTGTCTTGTCTTGTTTGG+TGG 0.399377 4.2:+91978219 MS.gene053166:CDS
TTGTCAGATAGTCATTGTTT+CGG 0.403264 4.2:+91979701 MS.gene053166:CDS
TGGTCATACATGTGTAGAAA+TGG 0.403859 4.2:+91979430 MS.gene053166:CDS
AAATGGAAGACAGTTCATTC+AGG 0.403941 4.2:+91979389 MS.gene053166:CDS
CCATCGCCTCCGCCACGTTC+AGG 0.406508 4.2:+91979749 MS.gene053166:CDS
GATTTCCTTGTTCTCTTTGG+AGG 0.411789 4.2:+91979455 MS.gene053166:CDS
TTCTGGACTTGGATTTGATA+AGG 0.415767 4.2:+91980228 MS.gene053166:CDS
TCATGGAAAATGATAGATGT+TGG 0.416089 4.2:+91979557 MS.gene053166:CDS
GAGCTTGTGCTTCAACTCTA+AGG 0.421662 4.2:+91980265 MS.gene053166:CDS
CATGGAAAATGATAGATGTT+GGG 0.424832 4.2:+91979558 MS.gene053166:CDS
AGTTATAATCAAAATTATAG+TGG 0.432532 4.2:+91977850 MS.gene053166:CDS
TTGTTTGGTGGTGGCTGTGA+TGG 0.433357 4.2:+91978231 MS.gene053166:CDS
ACTCAAGTCTCTCTTGCATA+AGG 0.439993 4.2:-91978007 None:intergenic
CCAAGTCCAGAAGGTTCAAC+AGG 0.443345 4.2:-91980217 None:intergenic
TGTCTTGTCTTGTTTGGTGG+TGG 0.453433 4.2:+91978222 MS.gene053166:CDS
TGGAAACGATGGAAATCAAA+TGG 0.459866 4.2:+91980097 MS.gene053166:CDS
GAGTGTTGCTCCACCACCTA+GGG 0.460059 4.2:+91979580 MS.gene053166:CDS
GGTAGGTTGTTAATTTATGG+AGG 0.460207 4.2:+91979974 MS.gene053166:CDS
ATTTCCAGAGAATATTGAAA+TGG 0.461693 4.2:+91979372 MS.gene053166:CDS
CGTCAAAATGATACATGGAT+TGG 0.465503 4.2:+91979497 MS.gene053166:CDS
GTGTTTGGTGGAATGGTGGA+TGG 0.468198 4.2:+91980184 MS.gene053166:CDS
CTTGTCAAGGTTACATGAGA+TGG 0.473461 4.2:+91979867 MS.gene053166:CDS
ATGAAGTGCTTCATGATGTA+TGG 0.478974 4.2:+91979834 MS.gene053166:CDS
GATGTAATCTTGAGGTATGT+TGG 0.481435 4.2:-91977884 None:intergenic
CGTTATTTGTATGTGTTTGG+TGG 0.484542 4.2:+91980172 MS.gene053166:CDS
GGACACACGTTGACTTGCAT+TGG 0.486949 4.2:+91979770 MS.gene053166:CDS
CCTGAACGTGGCGGAGGCGA+TGG 0.489645 4.2:-91979749 None:intergenic
TTTGGAGGCATCAATGATCA+TGG 0.493134 4.2:+91979470 MS.gene053166:CDS
AGAGAGTGTTGACGAGGATG+TGG 0.493745 4.2:+91980077 MS.gene053166:CDS
CACTCTCTTTGAACTTGCCG+TGG 0.493848 4.2:-91980062 None:intergenic
CATGGAGGAATTGGACTTCA+CGG 0.495304 4.2:+91979647 MS.gene053166:CDS
GGTATTTCACTTCCTAGAGT+TGG 0.496132 4.2:+91979926 MS.gene053166:CDS
ATAGTCATTGTTTCGGCACA+TGG 0.499649 4.2:+91979708 MS.gene053166:CDS
GCATGAGCTCCCCTAGGTGG+TGG 0.503523 4.2:-91979590 None:intergenic
AAACTGATGAACATGGTGAT+TGG 0.504466 4.2:-91978070 None:intergenic
GGAGTGTTGCTCCACCACCT+AGG 0.505879 4.2:+91979579 MS.gene053166:CDS
GTATGTGTTTGGTGGAATGG+TGG 0.507525 4.2:+91980180 MS.gene053166:CDS
AGTTGGTCACACTGCTACAA+TGG 0.510947 4.2:+91979943 MS.gene053166:CDS
CATAAATTGTCATACCCTCA+TGG 0.513611 4.2:+91978144 MS.gene053166:CDS
TTTGAATCTCTTGCATGTCA+TGG 0.513878 4.2:-91977953 None:intergenic
CTAGGAAGTGAAATACCATC+TGG 0.516166 4.2:-91979920 None:intergenic
ACTTCACGGCCTTCGTTTAG+GGG 0.526092 4.2:+91979661 MS.gene053166:CDS
TTGCATCTATAGGGAGAAGA+AGG 0.528249 4.2:-91977918 None:intergenic
AACGTGGCGGAGGCGATGGA+TGG 0.538917 4.2:-91979745 None:intergenic
GTGTGTCCTGAACGTGGCGG+AGG 0.547895 4.2:-91979755 None:intergenic
ACTTGCCGTGGTTGAAGGAA+TGG 0.557428 4.2:-91980050 None:intergenic
CTATAAGCAAATATATCAGA+TGG 0.558115 4.2:+91978107 MS.gene053166:CDS
GTAGCAGTGTGACCAACTCT+AGG 0.558419 4.2:-91979938 None:intergenic
GAGAAGACTCATCAAGACAT+AGG 0.561244 4.2:+91979996 MS.gene053166:CDS
TGGTTATTGGATACTTGTCA+AGG 0.561263 4.2:+91979854 MS.gene053166:CDS
TAGTTCCATTCCTTCAACCA+CGG 0.562370 4.2:+91980045 MS.gene053166:CDS
TTGCATCGACGACAAGAGAA+TGG 0.566710 4.2:+91979619 MS.gene053166:CDS
TTTGGTGGTGGCTGTGATGG+AGG 0.568418 4.2:+91978234 MS.gene053166:CDS
GGTCATACATGTGTAGAAAT+GGG 0.572564 4.2:+91979431 MS.gene053166:CDS
AGACTTGAGTTCAACATGTG+TGG 0.574605 4.2:+91978020 MS.gene053166:CDS
GACAAGAGAATGGTAATCCA+TGG 0.574745 4.2:+91979629 MS.gene053166:CDS
GACGACACCTTGATGACACA+TGG 0.581104 4.2:+91979330 MS.gene053166:CDS
GAAACCGTCAAAATGATACA+TGG 0.591830 4.2:+91979492 MS.gene053166:CDS
GCCTTCGTTTAGGGGACACA+TGG 0.593734 4.2:+91979669 MS.gene053166:CDS
TGATGCCTCCAAAGAGAACA+AGG 0.601552 4.2:-91979460 None:intergenic
CAAGCAGCATGAGCTCCCCT+AGG 0.602113 4.2:-91979596 None:intergenic
TTGATTATAACTAACACTAG+TGG 0.606440 4.2:-91977839 None:intergenic
TTATCAAATCCAAGTCCAGA+AGG 0.606895 4.2:-91980226 None:intergenic
GATTTACAAAACATACCAGA+TGG 0.608221 4.2:+91979905 MS.gene053166:CDS
ATGCCACCCATGTGTCATCA+AGG 0.622366 4.2:-91979337 None:intergenic
GACACATGGGTGGCATACAT+TGG 0.624790 4.2:+91979344 MS.gene053166:CDS
ACATACAAATAACGACCAGA+AGG 0.627124 4.2:-91980163 None:intergenic
GTATGACCAAATCTTCCACT+TGG 0.629532 4.2:-91979416 None:intergenic
CGTGAAGTCCAATTCCTCCA+TGG 0.635655 4.2:-91979646 None:intergenic
GCAGCATGAGCTCCCCTAGG+TGG 0.638154 4.2:-91979593 None:intergenic
GGAAATCTAAATCTCCATGA+GGG 0.645796 4.2:-91978158 None:intergenic
CGATGAAACGATCTAGACTT+CGG 0.657515 4.2:-91980127 None:intergenic
GTTACACACAATGAAAACAA+AGG 0.659251 4.2:+91979524 MS.gene053166:CDS
GTCAACGTGTGTCCTGAACG+TGG 0.663195 4.2:-91979761 None:intergenic
GTTCATTCAGGCATACCAAG+TGG 0.677159 4.2:+91979401 MS.gene053166:CDS
TCCATGTGTCCCCTAAACGA+AGG 0.678498 4.2:-91979670 None:intergenic
GGGAAATCTAAATCTCCATG+AGG 0.678724 4.2:-91978159 None:intergenic
ACACCTTGATGACACATGGG+TGG 0.680411 4.2:+91979334 MS.gene053166:CDS
AGTGTTGCTCCACCACCTAG+GGG 0.681365 4.2:+91979581 MS.gene053166:CDS
ACGACCAGAAGGATCTACGC+AGG 0.686097 4.2:-91980152 None:intergenic
GTTCAAAGAGAGTGTTGACG+AGG 0.688260 4.2:+91980071 MS.gene053166:CDS
TGACGAGGATGTGGAAACGA+TGG 0.693492 4.2:+91980086 MS.gene053166:CDS
ATAGTGAAGATGTAATCTTG+AGG 0.705437 4.2:-91977892 None:intergenic
ACGACACCTTGATGACACAT+GGG 0.706425 4.2:+91979331 MS.gene053166:CDS
AAGAGAATGGTAATCCATGG+AGG 0.711153 4.2:+91979632 MS.gene053166:CDS
TAACTTCATCTGAAACACTG+TGG 0.716627 4.2:+91977980 MS.gene053166:CDS
TCCATGAAAACTGATGAACA+TGG 0.770136 4.2:-91978077 None:intergenic
AACGTGTGTCCTGAACGTGG+CGG 0.807074 4.2:-91979758 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTATAATCAAAATTATAG+TGG + chr4.2:91977850-91977869 MS.gene053166:CDS 15.0%
!! TATTATATAAAATGATAACC+TGG - chr4.2:91978366-91978385 None:intergenic 15.0%
!!! CTTTTATTTCTTTCTTTTTT+TGG + chr4.2:91978275-91978294 MS.gene053166:intron 15.0%
!!! TTAAAAGTTTGTTATAGTTT+AGG + chr4.2:91978818-91978837 MS.gene053166:intron 15.0%
!! AAAAGAAAGAAATAAAAGCA+TGG - chr4.2:91978273-91978292 None:intergenic 20.0%
!! CAGTGTATAAATAATTCATA+TGG - chr4.2:91979123-91979142 None:intergenic 20.0%
!! TGTATAAATAATTCATATGG+TGG - chr4.2:91979120-91979139 None:intergenic 20.0%
!! TTACAGTAATTGATGTAAAT+TGG + chr4.2:91978969-91978988 MS.gene053166:intron 20.0%
! AGGTAAATAAATCCTTCTTA+TGG - chr4.2:91979041-91979060 None:intergenic 25.0%
! ATTATTTACCCTAAAGAGAA+AGG + chr4.2:91978431-91978450 MS.gene053166:intron 25.0%
! ATTTCCAGAGAATATTGAAA+TGG + chr4.2:91979372-91979391 MS.gene053166:CDS 25.0%
! CTATAAGCAAATATATCAGA+TGG + chr4.2:91978107-91978126 MS.gene053166:CDS 25.0%
! GTCTTGACTTAAAAATTAGA+CGG - chr4.2:91978610-91978629 None:intergenic 25.0%
! GTTTAATTCCTTTCTCTTTA+GGG - chr4.2:91978442-91978461 None:intergenic 25.0%
! TAAAGAGAAAGGAATTAAAC+AGG + chr4.2:91978442-91978461 MS.gene053166:intron 25.0%
! TGTTTAATTCCTTTCTCTTT+AGG - chr4.2:91978443-91978462 None:intergenic 25.0%
! TTGATTATAACTAACACTAG+TGG - chr4.2:91977842-91977861 None:intergenic 25.0%
!! ACATAGGAAAAATGACTTTT+GGG + chr4.2:91980012-91980031 MS.gene053166:CDS 25.0%
!! AGAAATAGGACAATACTTTT+TGG + chr4.2:91979794-91979813 MS.gene053166:CDS 25.0%
!! TTATTTATACACTGCCTTTT+TGG + chr4.2:91979129-91979148 MS.gene053166:intron 25.0%
!!! TTTGTTTTGTGCTTTGTTTT+AGG + chr4.2:91979308-91979327 MS.gene053166:intron 25.0%
AAGAAGGATTTATTTACCTG+TGG + chr4.2:91979042-91979061 MS.gene053166:intron 30.0%
AGAGAAAGAATTGCATCTAT+AGG - chr4.2:91977931-91977950 None:intergenic 30.0%
ATAGTGAAGATGTAATCTTG+AGG - chr4.2:91977895-91977914 None:intergenic 30.0%
ATTAGTCAAATCTCGACTAT+TGG + chr4.2:91979164-91979183 MS.gene053166:intron 30.0%
CATGGAAAATGATAGATGTT+GGG + chr4.2:91979558-91979577 MS.gene053166:CDS 30.0%
CTAACTTTCAAGGACTATAT+AGG - chr4.2:91979071-91979090 None:intergenic 30.0%
CTATATAGTCCTTGAAAGTT+AGG + chr4.2:91979069-91979088 MS.gene053166:intron 30.0%
GAGAAAGAATTGCATCTATA+GGG - chr4.2:91977930-91977949 None:intergenic 30.0%
GATTTACAAAACATACCAGA+TGG + chr4.2:91979905-91979924 MS.gene053166:CDS 30.0%
GTTACACACAATGAAAACAA+AGG + chr4.2:91979524-91979543 MS.gene053166:CDS 30.0%
TACTTGATCTTACCATAAGA+AGG + chr4.2:91979026-91979045 MS.gene053166:intron 30.0%
TCATGGAAAATGATAGATGT+TGG + chr4.2:91979557-91979576 MS.gene053166:CDS 30.0%
TCTTCCATTTCAATATTCTC+TGG - chr4.2:91979379-91979398 None:intergenic 30.0%
TTGTCAGATAGTCATTGTTT+CGG + chr4.2:91979701-91979720 MS.gene053166:CDS 30.0%
! ATCTAGTTTGAAGTCCAAAA+AGG - chr4.2:91979146-91979165 None:intergenic 30.0%
! ATTTTCAGAAGTGATTCACA+TGG + chr4.2:91978326-91978345 MS.gene053166:intron 30.0%
! CAATCCATGTATCATTTTGA+CGG - chr4.2:91979499-91979518 None:intergenic 30.0%
! CGAGTAACAAAAGTGTAATT+AGG + chr4.2:91978788-91978807 MS.gene053166:intron 30.0%
! GACATAGGAAAAATGACTTT+TGG + chr4.2:91980011-91980030 MS.gene053166:CDS 30.0%
!! AATAGGACAATACTTTTTGG+AGG + chr4.2:91979797-91979816 MS.gene053166:CDS 30.0%
!! TTGATAAGGAGCTTTTTCTT+GGG + chr4.2:91980242-91980261 MS.gene053166:CDS 30.0%
!! TTTGATAAGGAGCTTTTTCT+TGG + chr4.2:91980241-91980260 MS.gene053166:CDS 30.0%
!!! ACAAAGGCATTACATTTTCA+TGG + chr4.2:91979540-91979559 MS.gene053166:CDS 30.0%
AAACTGATGAACATGGTGAT+TGG - chr4.2:91978073-91978092 None:intergenic 35.0%
AAATGGAAGACAGTTCATTC+AGG + chr4.2:91979389-91979408 MS.gene053166:CDS 35.0%
AAGGACCTGATTGTAACAAT+TGG + chr4.2:91978693-91978712 MS.gene053166:intron 35.0%
ACATACAAATAACGACCAGA+AGG - chr4.2:91980166-91980185 None:intergenic 35.0%
AGACTAACTTAGACCAACAT+TGG + chr4.2:91978626-91978645 MS.gene053166:intron 35.0%
AGGACCTGATTGTAACAATT+GGG + chr4.2:91978694-91978713 MS.gene053166:intron 35.0%
ATTAGACGGTTAGTAGACAA+AGG - chr4.2:91978596-91978615 None:intergenic 35.0%
CATAAATTGTCATACCCTCA+TGG + chr4.2:91978144-91978163 MS.gene053166:CDS 35.0%
CGTCAAAATGATACATGGAT+TGG + chr4.2:91979497-91979516 MS.gene053166:CDS 35.0%
CGTTATTTGTATGTGTTTGG+TGG + chr4.2:91980172-91980191 MS.gene053166:CDS 35.0%
GAAACCGTCAAAATGATACA+TGG + chr4.2:91979492-91979511 MS.gene053166:CDS 35.0%
GATGTAATCTTGAGGTATGT+TGG - chr4.2:91977887-91977906 None:intergenic 35.0%
GCTTCATGATGTATGGTTAT+TGG + chr4.2:91979841-91979860 MS.gene053166:CDS 35.0%
GGAAATCTAAATCTCCATGA+GGG - chr4.2:91978161-91978180 None:intergenic 35.0%
GGAGGTAGGTTGTTAATTTA+TGG + chr4.2:91979971-91979990 MS.gene053166:CDS 35.0%
GGTAGGTTGTTAATTTATGG+AGG + chr4.2:91979974-91979993 MS.gene053166:CDS 35.0%
GGTCATACATGTGTAGAAAT+GGG + chr4.2:91979431-91979450 MS.gene053166:CDS 35.0%
GGTCGTTATTTGTATGTGTT+TGG + chr4.2:91980169-91980188 MS.gene053166:CDS 35.0%
TCCATGAAAACTGATGAACA+TGG - chr4.2:91978080-91978099 None:intergenic 35.0%
TGGAAACGATGGAAATCAAA+TGG + chr4.2:91980097-91980116 MS.gene053166:CDS 35.0%
TGGTCATACATGTGTAGAAA+TGG + chr4.2:91979430-91979449 MS.gene053166:CDS 35.0%
TGGTTATTGGATACTTGTCA+AGG + chr4.2:91979854-91979873 MS.gene053166:CDS 35.0%
TTAAGCATTTCAACTTGCCT+AGG + chr4.2:91978996-91979015 MS.gene053166:intron 35.0%
TTATCAAATCCAAGTCCAGA+AGG - chr4.2:91980229-91980248 None:intergenic 35.0%
TTCTGGACTTGGATTTGATA+AGG + chr4.2:91980228-91980247 MS.gene053166:CDS 35.0%
TTTGAATCTCTTGCATGTCA+TGG - chr4.2:91977956-91977975 None:intergenic 35.0%
! ACCATGTTCATCAGTTTTCA+TGG + chr4.2:91978076-91978095 MS.gene053166:CDS 35.0%
! ATGAAGTGCTTCATGATGTA+TGG + chr4.2:91979834-91979853 MS.gene053166:CDS 35.0%
! GTGGCATATTTTCCAAAACT+GGG - chr4.2:91979101-91979120 None:intergenic 35.0%
! TAACTTCATCTGAAACACTG+TGG + chr4.2:91977980-91977999 MS.gene053166:CDS 35.0%
! TCTTGAGGTATGTTGGTTAT+TGG - chr4.2:91977880-91977899 None:intergenic 35.0%
! TGACTTGCATTGGAAGAAAT+AGG + chr4.2:91979780-91979799 MS.gene053166:CDS 35.0%
! TTTGTATGTGTTTGGTGGAA+TGG + chr4.2:91980177-91980196 MS.gene053166:CDS 35.0%
!! ACAATACTTTTTGGAGGTAG+AGG + chr4.2:91979803-91979822 MS.gene053166:CDS 35.0%
!! TGATAAGGAGCTTTTTCTTG+GGG + chr4.2:91980243-91980262 MS.gene053166:CDS 35.0%
AAGAGAATGGTAATCCATGG+AGG + chr4.2:91979632-91979651 MS.gene053166:CDS 40.0%
ACTCAAGTCTCTCTTGCATA+AGG - chr4.2:91978010-91978029 None:intergenic 40.0%
ACTGCCCAATTGTTACAATC+AGG - chr4.2:91978701-91978720 None:intergenic 40.0%
AGACTTGAGTTCAACATGTG+TGG + chr4.2:91978020-91978039 MS.gene053166:CDS 40.0%
AGATCAAGTAGAAGTCTCCT+AGG - chr4.2:91979016-91979035 None:intergenic 40.0%
AGGACTATATAGGAATCCAC+AGG - chr4.2:91979061-91979080 None:intergenic 40.0%
AGTGAGAAGCTCTTGCTTTA+GGG - chr4.2:91978182-91978201 None:intergenic 40.0%
ATAGTCATTGTTTCGGCACA+TGG + chr4.2:91979708-91979727 MS.gene053166:CDS 40.0%
ATGGTAATCCATGGAGGAAT+TGG + chr4.2:91979638-91979657 MS.gene053166:CDS 40.0%
CAGGTCCTTTCGTCTATTAA+CGG - chr4.2:91978682-91978701 None:intergenic 40.0%
CGATGAAACGATCTAGACTT+CGG - chr4.2:91980130-91980149 None:intergenic 40.0%
CTAGACCGTTAATAGACGAA+AGG + chr4.2:91978674-91978693 MS.gene053166:intron 40.0%
CTAGGAAGTGAAATACCATC+TGG - chr4.2:91979923-91979942 None:intergenic 40.0%
CTTGTCAAGGTTACATGAGA+TGG + chr4.2:91979867-91979886 MS.gene053166:CDS 40.0%
GACAAGAGAATGGTAATCCA+TGG + chr4.2:91979629-91979648 MS.gene053166:CDS 40.0%
GAGAAGACTCATCAAGACAT+AGG + chr4.2:91979996-91980015 MS.gene053166:CDS 40.0%
GATTTCCTTGTTCTCTTTGG+AGG + chr4.2:91979455-91979474 MS.gene053166:CDS 40.0%
GGGAAATCTAAATCTCCATG+AGG - chr4.2:91978162-91978181 None:intergenic 40.0%
GGGACATAACCTAACTTTCA+AGG - chr4.2:91979081-91979100 None:intergenic 40.0%
GGTATTTCACTTCCTAGAGT+TGG + chr4.2:91979926-91979945 MS.gene053166:CDS 40.0%
GGTGATTTCCTTGTTCTCTT+TGG + chr4.2:91979452-91979471 MS.gene053166:CDS 40.0%
GTATGACCAAATCTTCCACT+TGG - chr4.2:91979419-91979438 None:intergenic 40.0%
TAGTTCCATTCCTTCAACCA+CGG + chr4.2:91980045-91980064 MS.gene053166:CDS 40.0%
TTGCATCTATAGGGAGAAGA+AGG - chr4.2:91977921-91977940 None:intergenic 40.0%
TTTCACTAAAGACGCTTCAG+AGG + chr4.2:91979248-91979267 MS.gene053166:intron 40.0%
! ACTTTTGTTACTCGAGTGTC+AGG - chr4.2:91978782-91978801 None:intergenic 40.0%
! CACACTGCTACAATGGTTTT+AGG + chr4.2:91979950-91979969 MS.gene053166:CDS 40.0%
! GGTGGCATATTTTCCAAAAC+TGG - chr4.2:91979102-91979121 None:intergenic 40.0%
! GTGTCAGGATTGCACAATTT+TGG - chr4.2:91978767-91978786 None:intergenic 40.0%
! GTTAGGTTATGTCCCAGTTT+TGG + chr4.2:91979086-91979105 MS.gene053166:intron 40.0%
! TAGACCAACATTGGCTACTT+AGG + chr4.2:91978635-91978654 MS.gene053166:intron 40.0%
! TCTGACTGTCTTGTCTTGTT+TGG + chr4.2:91978216-91978235 MS.gene053166:CDS 40.0%
!! CTTTTTGGAGGTAGAGGTTT+AGG + chr4.2:91979809-91979828 MS.gene053166:CDS 40.0%
!! TTTGGAGGCATCAATGATCA+TGG + chr4.2:91979470-91979489 MS.gene053166:CDS 40.0%
!!! ACTGCTACAATGGTTTTAGG+AGG + chr4.2:91979953-91979972 MS.gene053166:CDS 40.0%
!!! CTACAATGGTTTTAGGAGGT+AGG + chr4.2:91979957-91979976 MS.gene053166:CDS 40.0%
AGAGCCTAAGTAGCCAATGT+TGG - chr4.2:91978642-91978661 None:intergenic 45.0%
AGTTCGCCCAATTGAAACAC+AGG + chr4.2:91978739-91978758 MS.gene053166:intron 45.0%
AGTTGGTCACACTGCTACAA+TGG + chr4.2:91979943-91979962 MS.gene053166:CDS 45.0%
CATGGAGGAATTGGACTTCA+CGG + chr4.2:91979647-91979666 MS.gene053166:CDS 45.0%
GAGTGAGAAGCTCTTGCTTT+AGG - chr4.2:91978183-91978202 None:intergenic 45.0%
GGCATACCAAGTGGAAGATT+TGG + chr4.2:91979410-91979429 MS.gene053166:CDS 45.0%
GTTCAACCTGTTGAACCTTC+TGG + chr4.2:91980211-91980230 MS.gene053166:CDS 45.0%
GTTCATTCAGGCATACCAAG+TGG + chr4.2:91979401-91979420 MS.gene053166:CDS 45.0%
GTTCGCCCAATTGAAACACA+GGG + chr4.2:91978740-91978759 MS.gene053166:intron 45.0%
TGATGCCTCCAAAGAGAACA+AGG - chr4.2:91979463-91979482 None:intergenic 45.0%
TTCGCCCAATTGAAACACAG+GGG + chr4.2:91978741-91978760 MS.gene053166:intron 45.0%
TTGGCCCCTGTGTTTCAATT+GGG - chr4.2:91978748-91978767 None:intergenic 45.0%
TTTGAACTTGCCGTGGTTGA+AGG - chr4.2:91980058-91980077 None:intergenic 45.0%
TTTGGCCCCTGTGTTTCAAT+TGG - chr4.2:91978749-91978768 None:intergenic 45.0%
! ACATTGGCTACTTAGGCTCT+TGG + chr4.2:91978642-91978661 MS.gene053166:intron 45.0%
! ACGACACCTTGATGACACAT+GGG + chr4.2:91979331-91979350 MS.gene053166:CDS 45.0%
! GTATGTGTTTGGTGGAATGG+TGG + chr4.2:91980180-91980199 MS.gene053166:CDS 45.0%
! TTGCATCGACGACAAGAGAA+TGG + chr4.2:91979619-91979638 MS.gene053166:CDS 45.0%
!! CAATTGGGCAGTTTGCTGTA+TGG + chr4.2:91978709-91978728 MS.gene053166:intron 45.0%
!! GACTGTCTTGTCTTGTTTGG+TGG + chr4.2:91978219-91978238 MS.gene053166:CDS 45.0%
!! GTTCAAAGAGAGTGTTGACG+AGG + chr4.2:91980071-91980090 MS.gene053166:CDS 45.0%
!! TGTCTTGTCTTGTTTGGTGG+TGG + chr4.2:91978222-91978241 MS.gene053166:CDS 45.0%
ACTTCACGGCCTTCGTTTAG+GGG + chr4.2:91979661-91979680 MS.gene053166:CDS 50.0%
ACTTGCCGTGGTTGAAGGAA+TGG - chr4.2:91980053-91980072 None:intergenic 50.0%
AGAGACTCAAGTCGCGCAAT+TGG - chr4.2:91978546-91978565 None:intergenic 50.0%
ATGCCACCCATGTGTCATCA+AGG - chr4.2:91979340-91979359 None:intergenic 50.0%
ATGGCTTCTAGTGTTCGACC+AGG + chr4.2:91978345-91978364 MS.gene053166:intron 50.0%
CACTCTCTTTGAACTTGCCG+TGG - chr4.2:91980065-91980084 None:intergenic 50.0%
CCAAGTCCAGAAGGTTCAAC+AGG - chr4.2:91980220-91980239 None:intergenic 50.0%
CCTGTTGAACCTTCTGGACT+TGG + chr4.2:91980217-91980236 MS.gene053166:CDS 50.0%
CGTGAAGTCCAATTCCTCCA+TGG - chr4.2:91979649-91979668 None:intergenic 50.0%
GACACATGGGTGGCATACAT+TGG + chr4.2:91979344-91979363 MS.gene053166:CDS 50.0%
GACTTCACGGCCTTCGTTTA+GGG + chr4.2:91979660-91979679 MS.gene053166:CDS 50.0%
GTAGCAGTGTGACCAACTCT+AGG - chr4.2:91979941-91979960 None:intergenic 50.0%
TCCATGTGTCCCCTAAACGA+AGG - chr4.2:91979673-91979692 None:intergenic 50.0%
TGACGAGGATGTGGAAACGA+TGG + chr4.2:91980086-91980105 MS.gene053166:CDS 50.0%
TTGCGCGACTTGAGTCTCTT+AGG + chr4.2:91978547-91978566 MS.gene053166:intron 50.0%
! ACACCTTGATGACACATGGG+TGG + chr4.2:91979334-91979353 MS.gene053166:CDS 50.0%
! GACGACACCTTGATGACACA+TGG + chr4.2:91979330-91979349 MS.gene053166:CDS 50.0%
! GTGTTTGGTGGAATGGTGGA+TGG + chr4.2:91980184-91980203 MS.gene053166:CDS 50.0%
!! AGAGAGTGTTGACGAGGATG+TGG + chr4.2:91980077-91980096 MS.gene053166:CDS 50.0%
!! GGACACACGTTGACTTGCAT+TGG + chr4.2:91979770-91979789 MS.gene053166:CDS 50.0%
!! TTGGGCAGTTTGCTGTATGG+AGG + chr4.2:91978712-91978731 MS.gene053166:intron 50.0%
!! TTGTTTGGTGGTGGCTGTGA+TGG + chr4.2:91978231-91978250 MS.gene053166:CDS 50.0%
AACGTGTGTCCTGAACGTGG+CGG - chr4.2:91979761-91979780 None:intergenic 55.0%
ACGACCAGAAGGATCTACGC+AGG - chr4.2:91980155-91980174 None:intergenic 55.0%
GCCTTCGTTTAGGGGACACA+TGG + chr4.2:91979669-91979688 MS.gene053166:CDS 55.0%
GGACTTCACGGCCTTCGTTT+AGG + chr4.2:91979659-91979678 MS.gene053166:CDS 55.0%
GTCAACGTGTGTCCTGAACG+TGG - chr4.2:91979764-91979783 None:intergenic 55.0%
! AGTGTTGCTCCACCACCTAG+GGG + chr4.2:91979581-91979600 MS.gene053166:CDS 55.0%
! GAGTGTTGCTCCACCACCTA+GGG + chr4.2:91979580-91979599 MS.gene053166:CDS 55.0%
!! TTTGGTGGTGGCTGTGATGG+AGG + chr4.2:91978234-91978253 MS.gene053166:CDS 55.0%
CAAGCAGCATGAGCTCCCCT+AGG - chr4.2:91979599-91979618 None:intergenic 60.0%
CGTGCCTGCGTAGATCCTTC+TGG + chr4.2:91980148-91980167 MS.gene053166:CDS 60.0%
!! GGAGTGTTGCTCCACCACCT+AGG + chr4.2:91979579-91979598 MS.gene053166:CDS 60.0%
GCAGCATGAGCTCCCCTAGG+TGG - chr4.2:91979596-91979615 None:intergenic 65.0%
GCATGAGCTCCCCTAGGTGG+TGG - chr4.2:91979593-91979612 None:intergenic 65.0%
GTGTGTCCTGAACGTGGCGG+AGG - chr4.2:91979758-91979777 None:intergenic 65.0%
! AACGTGGCGGAGGCGATGGA+TGG - chr4.2:91979748-91979767 None:intergenic 65.0%
CCATCGCCTCCGCCACGTTC+AGG + chr4.2:91979749-91979768 MS.gene053166:CDS 70.0%
! CCTGAACGTGGCGGAGGCGA+TGG - chr4.2:91979752-91979771 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 91977829 91980285 91977829 ID=MS.gene053166
chr4.2 mRNA 91977829 91980285 91977829 ID=MS.gene053166.t1;Parent=MS.gene053166
chr4.2 exon 91977829 91978255 91977829 ID=MS.gene053166.t1.exon1;Parent=MS.gene053166.t1
chr4.2 CDS 91977829 91978255 91977829 ID=cds.MS.gene053166.t1;Parent=MS.gene053166.t1
chr4.2 exon 91979330 91980285 91979330 ID=MS.gene053166.t1.exon2;Parent=MS.gene053166.t1
chr4.2 CDS 91979330 91980285 91979330 ID=cds.MS.gene053166.t1;Parent=MS.gene053166.t1
Gene Sequence

>MS.gene053166

ATGGAAGAAACCACTAGTGTTAGTTATAATCAAAATTATAGTGGATCACCAATAACCAACATACCTCAAGATTACATCTTCACTATTATCCTTCTTCTCCCTATAGATGCAATTCTTTCTCTTTCCATGACATGCAAGAGATTCAAAGCTTTAACTTCATCTGAAACACTGTGGAAATCCTTATGCAAGAGAGACTTGAGTTCAACATGTGTGGATTCACTAGTCAAGTCTTGTAATATTTCCAATCACCATGTTCATCAGTTTTCATGGATGAAACTCTATAAGCAAATATATCAGATGGATTCTGTTTGTTGTCATAAATTGTCATACCCTCATGGAGATTTAGATTTCCCTAAAGCAAGAGCTTCTCACTCTCTCAACTTTGTTTCTGACTGTCTTGTCTTGTTTGGTGGTGGCTGTGATGGAGGTTAGTTTCACTTTCCATGCTTTTATTTCTTTCTTTTTTTGGTTATTTTTGTTGTTGTTTTGTACTGTGTATTTTCAGAAGTGATTCACATGGCTTCTAGTGTTCGACCAGGTTATCATTTTATATAATATATATCATAATCTTATCTATTTTTTGTTTTTCATGTCAGAGATAAATTATTTACCCTAAAGAGAAAGGAATTAAACAGGAAAATATTATACTAAAAAGCTCAATTAATTGTTATTTTAGTCTCAAGATGACACGATTATGCAATTTTGATCTGTATTCCAATTGCGCGACTTGAGTCTCTTAGGTATAGTAATTGTTATAACGTTGTCCTTTGTCTACTAACCGTCTAATTTTTAAGTCAAGACTAACTTAGACCAACATTGGCTACTTAGGCTCTTGGTGTTAAATACTAGACCGTTAATAGACGAAAGGACCTGATTGTAACAATTGGGCAGTTTGCTGTATGGAGGATTCAGTTCGCCCAATTGAAACACAGGGGCCAAAATTGTGCAATCCTGACACTCGAGTAACAAAAGTGTAATTAGGTATAAATTTAAAAGTTTGTTATAGTTTAGGTGATGAGACTTATATTTGAGAATGAAGTGAATTCAATGTTATTTTCATGTCAAGTTTGTTATCACTGTATTTTTCTTATTTGAAAGATTCAAGTATAAATGAGTATGAGCTTTCTTCTTGATGTCTTGTTACAGTAATTGATGTAAATTGGAATTTTAAGCATTTCAACTTGCCTAGGAGACTTCTACTTGATCTTACCATAAGAAGGATTTATTTACCTGTGGATTCCTATATAGTCCTTGAAAGTTAGGTTATGTCCCAGTTTTGGAAAATATGCCACCATATGAATTATTTATACACTGCCTTTTTGGACTTCAAACTAGATTAGTCAAATCTCGACTATTGGATTAATCTAAGATAAGATATATATAATCATCTCGATAGTTAGATTAATCAAACAGTCGATGTTTCACTAAAGACGCTTCAGAGGATTCAAGTTGAGTAGTTATAAGTTAATATTTAATATATTTGTTTTGTGCTTTGTTTTAGGACGACACCTTGATGACACATGGGTGGCATACATTGGTAGCGATTTCCAGAGAATATTGAAATGGAAGACAGTTCATTCAGGCATACCAAGTGGAAGATTTGGTCATACATGTGTAGAAATGGGTGATTTCCTTGTTCTCTTTGGAGGCATCAATGATCATGGAAACCGTCAAAATGATACATGGATTGGAAAAGTTACACACAATGAAAACAAAGGCATTACATTTTCATGGAAAATGATAGATGTTGGGAGTGTTGCTCCACCACCTAGGGGAGCTCATGCTGCTTGTTGCATCGACGACAAGAGAATGGTAATCCATGGAGGAATTGGACTTCACGGCCTTCGTTTAGGGGACACATGGATCTTAGAATTGTCAGATAGTCATTGTTTCGGCACATGGCATGAGATTGCTATCCATCCATCGCCTCCGCCACGTTCAGGACACACGTTGACTTGCATTGGAAGAAATAGGACAATACTTTTTGGAGGTAGAGGTTTAGGTTATGAAGTGCTTCATGATGTATGGTTATTGGATACTTGTCAAGGTTACATGAGATGGATTCAAGTACTTTATGATTTACAAAACATACCAGATGGTATTTCACTTCCTAGAGTTGGTCACACTGCTACAATGGTTTTAGGAGGTAGGTTGTTAATTTATGGAGGAGAAGACTCATCAAGACATAGGAAAAATGACTTTTGGGTATTAGATATTAGTTCCATTCCTTCAACCACGGCAAGTTCAAAGAGAGTGTTGACGAGGATGTGGAAACGATGGAAATCAAATGGATATGAACCGAAGTCTAGATCGTTTCATCGTGCCTGCGTAGATCCTTCTGGTCGTTATTTGTATGTGTTTGGTGGAATGGTGGATGGTTTAGTTCAACCTGTTGAACCTTCTGGACTTGGATTTGATAAGGAGCTTTTTCTTGGGGAGCTTGTGCTTCAACTCTAA

Protein sequence

>MS.gene053166.t1

MEETTSVSYNQNYSGSPITNIPQDYIFTIILLLPIDAILSLSMTCKRFKALTSSETLWKSLCKRDLSSTCVDSLVKSCNISNHHVHQFSWMKLYKQIYQMDSVCCHKLSYPHGDLDFPKARASHSLNFVSDCLVLFGGGCDGGRHLDDTWVAYIGSDFQRILKWKTVHSGIPSGRFGHTCVEMGDFLVLFGGINDHGNRQNDTWIGKVTHNENKGITFSWKMIDVGSVAPPPRGAHAACCIDDKRMVIHGGIGLHGLRLGDTWILELSDSHCFGTWHEIAIHPSPPPRSGHTLTCIGRNRTILFGGRGLGYEVLHDVWLLDTCQGYMRWIQVLYDLQNIPDGISLPRVGHTATMVLGGRLLIYGGEDSSRHRKNDFWVLDISSIPSTTASSKRVLTRMWKRWKSNGYEPKSRSFHRACVDPSGRYLYVFGGMVDGLVQPVEPSGLGFDKELFLGELVLQL