Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04975.t1 | XP_003600464.2 | 83.6 | 116 | 19 | 0 | 3 | 118 | 34 | 149 | 5.40E-42 | 180.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04975.t1 | G7IYA1 | 83.6 | 116 | 19 | 0 | 3 | 118 | 30 | 145 | 3.9e-42 | 180.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04975 | MS.gene25582 | 0.800374 | 1.48E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04975.t1 | MTR_3g061480 | 83.621 | 116 | 19 | 0 | 3 | 118 | 30 | 145 | 7.01e-57 | 173 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04975.t1 | AT2G01870 | 35.772 | 123 | 63 | 5 | 3 | 118 | 13 | 126 | 1.13e-14 | 66.2 |
Find 23 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGGCTTCTTTGGCCTTCTC+TGG | 0.212908 | 3.3:+58961858 | None:intergenic |
| GAGAGAGTACCCTTGAGTTT+TGG | 0.267475 | 3.3:+58961783 | None:intergenic |
| CTGCATAGTTCATGCATTAA+AGG | 0.282045 | 3.3:-58961907 | MS.gene04975:CDS |
| TCCTTTCTTGCACTTCTAAC+TGG | 0.318256 | 3.3:-58960680 | MS.gene04975:CDS |
| GATCAACCTCGATGAGGTTC+GGG | 0.393675 | 3.3:-58963510 | None:intergenic |
| GTAATTAAGCCAGCCATTGA+TGG | 0.399846 | 3.3:-58960611 | MS.gene04975:CDS |
| CGATCAACCTCGATGAGGTT+CGG | 0.403338 | 3.3:-58963511 | None:intergenic |
| GGGCTTCTTTGGCCTTCTCT+GGG | 0.431800 | 3.3:+58961859 | None:intergenic |
| GAAAATACGAAGACGAGATC+AGG | 0.480192 | 3.3:-58963473 | MS.gene04975:intron |
| ACCAGTTAGAAGTGCAAGAA+AGG | 0.491502 | 3.3:+58960679 | None:intergenic |
| TTTCTTGCACTTCTAACTGG+TGG | 0.502624 | 3.3:-58960677 | MS.gene04975:CDS |
| TATAGGTTATGGACCATCAA+TGG | 0.534653 | 3.3:+58960598 | None:intergenic |
| TGGCTGGCTTAATTACAGTA+AGG | 0.551216 | 3.3:+58960618 | None:intergenic |
| AGTTTCCTCTCCAAAACTCA+AGG | 0.567427 | 3.3:-58961793 | MS.gene04975:CDS |
| GGTTATGGACCATCAATGGC+TGG | 0.567707 | 3.3:+58960602 | None:intergenic |
| CTTATCACCTCCTCTCTCGT+AGG | 0.590439 | 3.3:+58960734 | None:intergenic |
| GATGAGGTTCGGGTCTAACA+AGG | 0.612646 | 3.3:-58963500 | MS.gene04975:CDS |
| GTTTCCTCTCCAAAACTCAA+GGG | 0.619477 | 3.3:-58961792 | MS.gene04975:intron |
| AGAAATGAAGCCTACGAGAG+AGG | 0.629871 | 3.3:-58960744 | MS.gene04975:CDS |
| GGAGGTGATAAGTGACAACA+AGG | 0.639196 | 3.3:-58960723 | MS.gene04975:CDS |
| ATATGAGATAGACCCAGAGA+AGG | 0.653858 | 3.3:-58961871 | MS.gene04975:CDS |
| AATGAAGCCTACGAGAGAGG+AGG | 0.660242 | 3.3:-58960741 | MS.gene04975:CDS |
| GAGGTGATAAGTGACAACAA+GGG | 0.821461 | 3.3:-58960722 | MS.gene04975:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAAAAATTAATTTTTTTT+AGG | + | chr3.3:58962557-58962576 | None:intergenic | 0.0% |
| !! | AGAAAAATTCAAAATATTAT+AGG | + | chr3.3:58962682-58962701 | None:intergenic | 10.0% |
| !!! | AAAAAATTCTGAATTTTTTT+TGG | - | chr3.3:58962649-58962668 | MS.gene04975:intron | 10.0% |
| !!! | AATTAATTTGTAATATAATG+TGG | + | chr3.3:58960851-58960870 | None:intergenic | 10.0% |
| !!! | TATAATATTTTGAATTTTTC+TGG | - | chr3.3:58962681-58962700 | MS.gene04975:intron | 10.0% |
| !!! | TTTTTCTCTTTTTTTTTTTT+GGG | - | chr3.3:58962349-58962368 | MS.gene04975:intron | 10.0% |
| !! | AAAACCATAAAGTTAAAAAA+AGG | + | chr3.3:58962966-58962985 | None:intergenic | 15.0% |
| !! | AAATATGTTGAATAATATCA+AGG | - | chr3.3:58963263-58963282 | MS.gene04975:intron | 15.0% |
| !! | ACTAAATGTAAATTTAGAAA+AGG | + | chr3.3:58963181-58963200 | None:intergenic | 15.0% |
| !! | AGAATTAACATTGAAAAAAA+AGG | + | chr3.3:58962869-58962888 | None:intergenic | 15.0% |
| !! | ATTATTCAACATATTTGAAT+TGG | + | chr3.3:58963259-58963278 | None:intergenic | 15.0% |
| !! | CTAAATGTAAATTTAGAAAA+GGG | + | chr3.3:58963180-58963199 | None:intergenic | 15.0% |
| !! | GAAAAATTGACATATTTATA+GGG | - | chr3.3:58962825-58962844 | MS.gene04975:intron | 15.0% |
| !! | GAAAAATTGACATATTTATA+GGG | + | chr3.3:58962844-58962825 | None:intergenic | 15.0% |
| !! | GAATTAACATTGAAAAAAAA+GGG | + | chr3.3:58962868-58962887 | None:intergenic | 15.0% |
| !! | TTATATATGACCAAAATAAA+CGG | - | chr3.3:58960882-58960901 | MS.gene04975:intron | 15.0% |
| !!! | ATATAAGTTTACTTTAAAAG+AGG | - | chr3.3:58962733-58962752 | MS.gene04975:intron | 15.0% |
| !!! | CTTTTTCTCTTTTTTTTTTT+TGG | - | chr3.3:58962348-58962367 | MS.gene04975:intron | 15.0% |
| !!! | TAGTGATTGAAAATTTTATA+GGG | + | chr3.3:58962452-58962471 | None:intergenic | 15.0% |
| !!! | TATAAGTTTACTTTAAAAGA+GGG | - | chr3.3:58962734-58962753 | MS.gene04975:intron | 15.0% |
| !!! | TGAAGATTGAAAATTTTATA+GGG | - | chr3.3:58962765-58962784 | MS.gene04975:intron | 15.0% |
| !!! | TTCAAATTTCCTATATTTTT+GGG | + | chr3.3:58961607-58961626 | None:intergenic | 15.0% |
| !!! | TTTTCCTTTTTTTAACTTTA+TGG | - | chr3.3:58962959-58962978 | MS.gene04975:intron | 15.0% |
| !!! | TTTTGATTGTCTTTATATAA+TGG | + | chr3.3:58961486-58961505 | None:intergenic | 15.0% |
| !! | AAAATATGGACAAGAAAAAA+TGG | + | chr3.3:58961222-58961241 | None:intergenic | 20.0% |
| !! | AAAGTTGAAAGAAAAAGTTT+AGG | + | chr3.3:58963328-58963347 | None:intergenic | 20.0% |
| !! | AAATATGGACAAGAAAAAAT+GGG | + | chr3.3:58961221-58961240 | None:intergenic | 20.0% |
| !! | AATTTAACGAATAATTGAGT+TGG | + | chr3.3:58961556-58961575 | None:intergenic | 20.0% |
| !! | ATAACATTAATGAATATGAG+TGG | + | chr3.3:58962049-58962068 | None:intergenic | 20.0% |
| !! | ATTTAACGAATAATTGAGTT+GGG | + | chr3.3:58961555-58961574 | None:intergenic | 20.0% |
| !! | ATTTCTAAACATAATGATAG+AGG | - | chr3.3:58962122-58962141 | MS.gene04975:intron | 20.0% |
| !! | ATTTGTCCTCAAATTAAAAT+CGG | - | chr3.3:58961134-58961153 | MS.gene04975:intron | 20.0% |
| !! | CGAAAAATTGACATATTTAT+AGG | - | chr3.3:58962824-58962843 | MS.gene04975:intron | 20.0% |
| !! | CGAAAAATTGACATATTTAT+AGG | + | chr3.3:58962843-58962824 | None:intergenic | 20.0% |
| !! | GAATTGCAATTGATTATATT+AGG | - | chr3.3:58962933-58962952 | MS.gene04975:intron | 20.0% |
| !!! | AAATTTTCAATCACTACTTT+TGG | - | chr3.3:58962456-58962475 | MS.gene04975:intron | 20.0% |
| !!! | AAATTTTCAATCTTCACTTT+TGG | + | chr3.3:58962761-58962780 | None:intergenic | 20.0% |
| !!! | CTTCAAATTTCCTATATTTT+TGG | + | chr3.3:58961608-58961627 | None:intergenic | 20.0% |
| !!! | GTAGTGATTGAAAATTTTAT+AGG | + | chr3.3:58962453-58962472 | None:intergenic | 20.0% |
| !!! | GTGAAGATTGAAAATTTTAT+AGG | - | chr3.3:58962764-58962783 | MS.gene04975:intron | 20.0% |
| !!! | TCAAATTTCCTATATTTTTG+GGG | + | chr3.3:58961606-58961625 | None:intergenic | 20.0% |
| !!! | TTACATTTTATCTTGAGTTA+GGG | + | chr3.3:58963053-58963072 | None:intergenic | 20.0% |
| !!! | TTTACATTTTATCTTGAGTT+AGG | + | chr3.3:58963054-58963073 | None:intergenic | 20.0% |
| ! | AAAAAATCAACTGTTTGAGA+TGG | - | chr3.3:58960934-58960953 | MS.gene04975:intron | 25.0% |
| ! | AAAATCTACCCCAAAAATAT+AGG | - | chr3.3:58961595-58961614 | MS.gene04975:intron | 25.0% |
| ! | ATGTTAATTCTCTTGTGATA+CGG | - | chr3.3:58962878-58962897 | MS.gene04975:intron | 25.0% |
| ! | CTTCTCATGTCTTAAAATTT+GGG | - | chr3.3:58961995-58962014 | MS.gene04975:intron | 25.0% |
| ! | CTTTGTATAATCTTAGGATA+GGG | + | chr3.3:58963209-58963228 | None:intergenic | 25.0% |
| ! | GCTAATCTTTGTATAATCTT+AGG | + | chr3.3:58963215-58963234 | None:intergenic | 25.0% |
| ! | GGAAATGAAGATAATGTTTA+TGG | + | chr3.3:58961971-58961990 | None:intergenic | 25.0% |
| ! | TAAAATTAGTGTGGTTCATT+TGG | + | chr3.3:58961897-58961916 | None:intergenic | 25.0% |
| ! | TCTTACAAACTAATCAAAAG+TGG | - | chr3.3:58960822-58960841 | MS.gene04975:intron | 25.0% |
| ! | TCTTTGTATAATCTTAGGAT+AGG | + | chr3.3:58963210-58963229 | None:intergenic | 25.0% |
| ! | TTTGTCCTCAAATTAAAATC+GGG | - | chr3.3:58961135-58961154 | MS.gene04975:intron | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | - | chr3.3:58962793-58962812 | MS.gene04975:intron | 25.0% |
| !! | AATTTATGCACCGTTTATTT+TGG | + | chr3.3:58960895-58960914 | None:intergenic | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | - | chr3.3:58962794-58962813 | MS.gene04975:intron | 25.0% |
| !!! | TTTCAGTTTTAAGAATGCAA+GGG | + | chr3.3:58961348-58961367 | None:intergenic | 25.0% |
| AAGTTAGAGTGTACAAAACT+CGG | + | chr3.3:58961301-58961320 | None:intergenic | 30.0% | |
| AATTGACCATTGTAATAGCA+AGG | - | chr3.3:58963124-58963143 | MS.gene04975:intron | 30.0% | |
| ACTTGGTCAAAAGGAAAATA+TGG | + | chr3.3:58961236-58961255 | None:intergenic | 30.0% | |
| AGCAACAACATAATCAAAAG+TGG | - | chr3.3:58960764-58960783 | MS.gene04975:intron | 30.0% | |
| ATTGTGTGCTAAAATTAGTG+TGG | + | chr3.3:58961906-58961925 | None:intergenic | 30.0% | |
| CTTGCATTCTTAAAACTGAA+AGG | - | chr3.3:58961347-58961366 | MS.gene04975:intron | 30.0% | |
| GAAATTGATGCAAATAGTGA+TGG | + | chr3.3:58962107-58962126 | None:intergenic | 30.0% | |
| GCTTCTCATGTCTTAAAATT+TGG | - | chr3.3:58961994-58962013 | MS.gene04975:intron | 30.0% | |
| TCAAAGACTAAACTGACTAA+CGG | + | chr3.3:58963098-58963117 | None:intergenic | 30.0% | |
| TCACAGTATAGGATAATTGA+GGG | + | chr3.3:58961854-58961873 | None:intergenic | 30.0% | |
| TTATAGGGACTAAAAGTTGA+AGG | - | chr3.3:58962780-58962799 | MS.gene04975:intron | 30.0% | |
| TTCACAGTATAGGATAATTG+AGG | + | chr3.3:58961855-58961874 | None:intergenic | 30.0% | |
| TTGTCCTCAAATTAAAATCG+GGG | - | chr3.3:58961136-58961155 | MS.gene04975:intron | 30.0% | |
| ! | AAGGACTTGATAATAGTAGT+TGG | - | chr3.3:58961366-58961385 | MS.gene04975:intron | 30.0% |
| ! | AGGACTTGATAATAGTAGTT+GGG | - | chr3.3:58961367-58961386 | MS.gene04975:intron | 30.0% |
| ! | GAATAATTTTGTCGAGGAAA+AGG | + | chr3.3:58961530-58961549 | None:intergenic | 30.0% |
| ! | GATTGTAAGATGCATGTTTT+AGG | - | chr3.3:58961393-58961412 | MS.gene04975:intron | 30.0% |
| ! | TAGAGATAGACTGAATTTTC+TGG | + | chr3.3:58962283-58962302 | None:intergenic | 30.0% |
| ! | TTTTGTCACATTCACAGTAT+AGG | + | chr3.3:58961865-58961884 | None:intergenic | 30.0% |
| !! | AAGTCGAAGGAATATTTTAG+AGG | + | chr3.3:58962424-58962443 | None:intergenic | 30.0% |
| !! | ACGATCTATTCTGAAATCAA+TGG | + | chr3.3:58961269-58961288 | None:intergenic | 30.0% |
| !! | AGTCGAAGGAATATTTTAGA+GGG | + | chr3.3:58962423-58962442 | None:intergenic | 30.0% |
| !! | CGATCTATTCTGAAATCAAT+GGG | + | chr3.3:58961268-58961287 | None:intergenic | 30.0% |
| !! | CTATCATGAAAAAGTGTCTA+AGG | - | chr3.3:58961433-58961452 | MS.gene04975:intron | 30.0% |
| !! | TATTCTGAAATCAATGGGTT+GGG | + | chr3.3:58961263-58961282 | None:intergenic | 30.0% |
| !! | TTTACACCTTGCTATTACAA+TGG | + | chr3.3:58963133-58963152 | None:intergenic | 30.0% |
| !!! | CTTTCAGTTTTAAGAATGCA+AGG | + | chr3.3:58961349-58961368 | None:intergenic | 30.0% |
| !!! | TTTTAAGACATGAGAAGCAA+TGG | + | chr3.3:58961992-58962011 | None:intergenic | 30.0% |
| AAATTAAAATCGGGGTTGGA+CGG | - | chr3.3:58961144-58961163 | MS.gene04975:intron | 35.0% | |
| AATGCATGGACATAACTGAA+AGG | + | chr3.3:58961198-58961217 | None:intergenic | 35.0% | |
| ACAAAATCATTCGTCTAACG+AGG | + | chr3.3:58962904-58962923 | None:intergenic | 35.0% | |
| ACATAAGACTGTGTTAGATG+AGG | - | chr3.3:58960983-58961002 | MS.gene04975:intron | 35.0% | |
| ATTGATGCAAATAGTGATGG+TGG | + | chr3.3:58962104-58962123 | None:intergenic | 35.0% | |
| CAAGAAAAAATGGGAATGCA+TGG | + | chr3.3:58961212-58961231 | None:intergenic | 35.0% | |
| CTATTTCGAACTTCAACCTA+GGG | + | chr3.3:58961032-58961051 | None:intergenic | 35.0% | |
| CTGCATAGTTCATGCATTAA+AGG | - | chr3.3:58962196-58962215 | MS.gene04975:intron | 35.0% | |
| TCTATTTCGAACTTCAACCT+AGG | + | chr3.3:58961033-58961052 | None:intergenic | 35.0% | |
| TTATAGGGACTAAAAGTCGA+AGG | + | chr3.3:58962437-58962456 | None:intergenic | 35.0% | |
| TTCAGAATAGATCGTAAGAC+AGG | - | chr3.3:58961274-58961293 | MS.gene04975:intron | 35.0% | |
| ! | ATAGAGGCATATTCAAAGAG+AGG | - | chr3.3:58962138-58962157 | MS.gene04975:intron | 35.0% |
| ! | GGACTTGATAATAGTAGTTG+GGG | - | chr3.3:58961368-58961387 | MS.gene04975:intron | 35.0% |
| ! | TGGGAAGAATAATTTTGTCG+AGG | + | chr3.3:58961536-58961555 | None:intergenic | 35.0% |
| !! | ATGCATGTTTTAGGCTTGTA+AGG | - | chr3.3:58961402-58961421 | MS.gene04975:intron | 35.0% |
| !! | CTATTCTGAAATCAATGGGT+TGG | + | chr3.3:58961264-58961283 | None:intergenic | 35.0% |
| !! | TTTCTGGTCAAGCTTTTTGA+GGG | + | chr3.3:58962267-58962286 | None:intergenic | 35.0% |
| !! | TTTTCTGGTCAAGCTTTTTG+AGG | + | chr3.3:58962268-58962287 | None:intergenic | 35.0% |
| AGTTTCCTCTCCAAAACTCA+AGG | - | chr3.3:58962310-58962329 | MS.gene04975:intron | 40.0% | |
| ATATGAGATAGACCCAGAGA+AGG | - | chr3.3:58962232-58962251 | MS.gene04975:intron | 40.0% | |
| CCTCAAATTAAAATCGGGGT+TGG | - | chr3.3:58961140-58961159 | MS.gene04975:intron | 40.0% | |
| GAAAATACGAAGACGAGATC+AGG | - | chr3.3:58960630-58960649 | MS.gene04975:CDS | 40.0% | |
| GAGGTGATAAGTGACAACAA+GGG | - | chr3.3:58963381-58963400 | MS.gene04975:intron | 40.0% | |
| GTAATTAAGCCAGCCATTGA+TGG | - | chr3.3:58963492-58963511 | MS.gene04975:CDS | 40.0% | |
| GTTTCCTCTCCAAAACTCAA+GGG | - | chr3.3:58962311-58962330 | MS.gene04975:intron | 40.0% | |
| TCCTTTCTTGCACTTCTAAC+TGG | - | chr3.3:58963423-58963442 | MS.gene04975:intron | 40.0% | |
| TTGGGTTTCACTTGGTCAAA+AGG | + | chr3.3:58961245-58961264 | None:intergenic | 40.0% | |
| TTTCTTGCACTTCTAACTGG+TGG | - | chr3.3:58963426-58963445 | MS.gene04975:intron | 40.0% | |
| ! | ACCAGTTAGAAGTGCAAGAA+AGG | + | chr3.3:58963427-58963446 | None:intergenic | 40.0% |
| ! | AGTGTGGTTCATTTGGAATG+TGG | + | chr3.3:58961890-58961909 | None:intergenic | 40.0% |
| ! | CGAGGAAAAGGTTAGTTAGT+CGG | + | chr3.3:58961518-58961537 | None:intergenic | 40.0% |
| !! | AAGCTTTTTGAGGGCTTCTT+TGG | + | chr3.3:58962258-58962277 | None:intergenic | 40.0% |
| !! | TAGGATAATTGAGGGCATTC+TGG | + | chr3.3:58961846-58961865 | None:intergenic | 40.0% |
| !! | TGGCTGGCTTAATTACAGTA+AGG | + | chr3.3:58963488-58963507 | None:intergenic | 40.0% |
| !!! | CCAACCCCGATTTTAATTTG+AGG | + | chr3.3:58961143-58961162 | None:intergenic | 40.0% |
| ACTGAGGTTGAGTTAACCCT+CGG | + | chr3.3:58961175-58961194 | None:intergenic | 45.0% | |
| AGAAATGAAGCCTACGAGAG+AGG | - | chr3.3:58963359-58963378 | MS.gene04975:intron | 45.0% | |
| GGACATAACTGAAAGGACTG+AGG | + | chr3.3:58961191-58961210 | None:intergenic | 45.0% | |
| GGAGGTGATAAGTGACAACA+AGG | - | chr3.3:58963380-58963399 | MS.gene04975:intron | 45.0% | |
| GGCTGCTTATAGATGCTAAG+AGG | + | chr3.3:58962083-58962102 | None:intergenic | 45.0% | |
| GGTTACATACTAGATGCTCG+TGG | + | chr3.3:58961327-58961346 | None:intergenic | 45.0% | |
| GTGAGTGTAGTGTAGAGTGA+AGG | - | chr3.3:58962017-58962036 | MS.gene04975:intron | 45.0% | |
| !! | TCAATGGGTTGGGTTTCACT+TGG | + | chr3.3:58961253-58961272 | None:intergenic | 45.0% |
| !!! | AGTACCCTTGAGTTTTGGAG+AGG | + | chr3.3:58962318-58962337 | None:intergenic | 45.0% |
| !!! | GAGAGAGTACCCTTGAGTTT+TGG | + | chr3.3:58962323-58962342 | None:intergenic | 45.0% |
| !! | ACAAAAATTAAATTAAAAAT+AGG | + | chr3.3:58962484-58962503 | None:intergenic | 5.0% |
| !! | CAAAAATTAAATTAAAAATA+GGG | + | chr3.3:58962483-58962502 | None:intergenic | 5.0% |
| !!! | ATGAATTTTTATATTTTTTA+CGG | + | chr3.3:58962610-58962629 | None:intergenic | 5.0% |
| AATGAAGCCTACGAGAGAGG+AGG | - | chr3.3:58963362-58963381 | MS.gene04975:intron | 50.0% | |
| AGACTGTGTTAGATGAGGCG+AGG | - | chr3.3:58960988-58961007 | MS.gene04975:intron | 50.0% | |
| CGACATGTGAAGTGAACCCT+AGG | - | chr3.3:58961013-58961032 | MS.gene04975:intron | 50.0% | |
| CTGAGGTTGAGTTAACCCTC+GGG | + | chr3.3:58961174-58961193 | None:intergenic | 50.0% | |
| CTTATCACCTCCTCTCTCGT+AGG | + | chr3.3:58963372-58963391 | None:intergenic | 50.0% | |
| !! | CAAGCGTCGTTTTCATGCTG+AGG | - | chr3.3:58961939-58961958 | MS.gene04975:intron | 50.0% |
| ! | AGGGCTTCTTTGGCCTTCTC+TGG | + | chr3.3:58962248-58962267 | None:intergenic | 55.0% |
| ! | GGGCTTCTTTGGCCTTCTCT+GGG | + | chr3.3:58962247-58962266 | None:intergenic | 55.0% |
| GGGTTGGACGGATAACCCGA+GGG | - | chr3.3:58961156-58961175 | MS.gene04975:intron | 60.0% | |
| GGGGTTGGACGGATAACCCG+AGG | - | chr3.3:58961155-58961174 | MS.gene04975:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 58960604 | 58963521 | 58960604 | ID=MS.gene04975 |
| chr3.3 | mRNA | 58960604 | 58963521 | 58960604 | ID=MS.gene04975.t1;Parent=MS.gene04975 |
| chr3.3 | exon | 58963474 | 58963521 | 58963474 | ID=MS.gene04975.t1.exon1;Parent=MS.gene04975.t1 |
| chr3.3 | CDS | 58963474 | 58963521 | 58963474 | ID=cds.MS.gene04975.t1;Parent=MS.gene04975.t1 |
| chr3.3 | exon | 58961793 | 58961934 | 58961793 | ID=MS.gene04975.t1.exon2;Parent=MS.gene04975.t1 |
| chr3.3 | CDS | 58961793 | 58961934 | 58961793 | ID=cds.MS.gene04975.t1;Parent=MS.gene04975.t1 |
| chr3.3 | exon | 58960604 | 58960770 | 58960604 | ID=MS.gene04975.t1.exon3;Parent=MS.gene04975.t1 |
| chr3.3 | CDS | 58960604 | 58960770 | 58960604 | ID=cds.MS.gene04975.t1;Parent=MS.gene04975.t1 |
| Gene Sequence |
| Protein sequence |
