Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04992.t1 | XP_003600695.2 | 83.1 | 272 | 43 | 2 | 1 | 269 | 1 | 272 | 6.80E-97 | 364 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04992.t1 | A0A396IYR1 | 83.1 | 272 | 43 | 2 | 1 | 269 | 1 | 272 | 4.9e-97 | 364.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene04992 | MS.gene009653 | PPI |
| MS.gene04992 | MS.gene049594 | PPI |
| MS.gene53889 | MS.gene04992 | PPI |
| MS.gene26246 | MS.gene04992 | PPI |
| MS.gene017247 | MS.gene04992 | PPI |
| MS.gene98045 | MS.gene04992 | PPI |
| MS.gene04992 | MS.gene05127 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04992.t1 | MTR_3g065180 | 89.231 | 260 | 25 | 2 | 13 | 269 | 1 | 260 | 6.94e-155 | 436 |
| MS.gene04992.t1 | MTR_7g056407 | 68.797 | 266 | 70 | 6 | 13 | 269 | 1 | 262 | 5.04e-95 | 285 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04992.t1 | AT3G07120 | 33.218 | 289 | 149 | 11 | 13 | 269 | 1 | 277 | 2.76e-22 | 95.9 |
| MS.gene04992.t1 | AT3G25030 | 39.496 | 119 | 58 | 7 | 3 | 116 | 7 | 116 | 1.75e-13 | 69.3 |
| MS.gene04992.t1 | AT3G25030 | 39.496 | 119 | 58 | 7 | 3 | 116 | 7 | 116 | 1.75e-13 | 69.3 |
| MS.gene04992.t1 | AT3G25030 | 39.496 | 119 | 58 | 7 | 3 | 116 | 7 | 116 | 1.75e-13 | 69.3 |
| MS.gene04992.t1 | AT4G13100 | 35.135 | 111 | 64 | 4 | 8 | 116 | 13 | 117 | 2.68e-12 | 66.2 |
| MS.gene04992.t1 | AT4G13100 | 35.897 | 117 | 66 | 5 | 3 | 116 | 7 | 117 | 3.92e-12 | 65.5 |
| MS.gene04992.t1 | AT4G13100 | 35.897 | 117 | 66 | 5 | 3 | 116 | 7 | 117 | 3.92e-12 | 65.5 |
| MS.gene04992.t1 | AT4G13100 | 35.897 | 117 | 66 | 5 | 3 | 116 | 7 | 117 | 3.92e-12 | 65.5 |
| MS.gene04992.t1 | AT4G13100 | 35.897 | 117 | 66 | 5 | 3 | 116 | 7 | 117 | 3.92e-12 | 65.5 |
| MS.gene04992.t1 | AT4G13100 | 35.897 | 117 | 66 | 5 | 3 | 116 | 7 | 117 | 4.38e-12 | 65.5 |
| MS.gene04992.t1 | AT4G13100 | 35.897 | 117 | 66 | 5 | 3 | 116 | 4 | 114 | 4.38e-12 | 65.5 |
| MS.gene04992.t1 | AT4G13100 | 35.897 | 117 | 66 | 5 | 3 | 116 | 7 | 117 | 4.38e-12 | 65.5 |
Find 76 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTCTGCTGTTTGGATTT+TGG | 0.125473 | 3.3:-58731642 | None:intergenic |
| TAGCCGAAGCTTGTCTTTAA+AGG | 0.159939 | 3.3:-58731560 | None:intergenic |
| GAGCTCCCACGAGTGAATTT+TGG | 0.247907 | 3.3:-58731784 | None:intergenic |
| GATGTGTTCAAGGGAGCTTC+TGG | 0.299919 | 3.3:+58732293 | MS.gene04992:CDS |
| TGTGAAAAGCTTCTGCTGTT+TGG | 0.327474 | 3.3:-58731649 | None:intergenic |
| ATGTCGTTGATGGATTTGTT+AGG | 0.340148 | 3.3:+58732081 | MS.gene04992:CDS |
| TGCAGCGGAGGCTGAGGCTG+AGG | 0.380447 | 3.3:+58732038 | MS.gene04992:CDS |
| GATAATGCCCTCCCCGTCTC+TGG | 0.395714 | 3.3:-58731976 | None:intergenic |
| GGGGAGACTGATAGAGAGAT+GGG | 0.409616 | 3.3:+58732102 | MS.gene04992:CDS |
| GCTGAGGCTGAGGCTGCAAC+AGG | 0.416381 | 3.3:+58732048 | MS.gene04992:CDS |
| AGAAGCTGCAGCGGAGGCTG+AGG | 0.420492 | 3.3:+58732032 | MS.gene04992:CDS |
| TGTCGTTGATGGATTTGTTA+GGG | 0.426572 | 3.3:+58732082 | MS.gene04992:CDS |
| ACCTCCGACGATGTCGTTGA+TGG | 0.428506 | 3.3:+58732071 | MS.gene04992:CDS |
| TTTGAATATGGAAGGTCATC+GGG | 0.444490 | 3.3:+58730868 | None:intergenic |
| TGGATAGGGATGTCTGATGT+TGG | 0.451282 | 3.3:-58731622 | None:intergenic |
| AAGCCTTTAAAGACAAGCTT+CGG | 0.451547 | 3.3:+58731557 | MS.gene04992:CDS |
| TGGATCCGACGACACACTAC+TGG | 0.451753 | 3.3:-58731881 | None:intergenic |
| AGCGGCAGAAGCTGCAGCGG+AGG | 0.453049 | 3.3:+58732026 | MS.gene04992:CDS |
| AGAGCTTGGCGGTGTAGAGC+CGG | 0.453417 | 3.3:-58730987 | None:intergenic |
| CGTCTTTGATGATGTCTATG+AGG | 0.458675 | 3.3:-58731045 | None:intergenic |
| AGCAGTGGCGGCACAAGAAG+CGG | 0.461146 | 3.3:+58732008 | MS.gene04992:CDS |
| GGATGCTTGGTATCATCGTC+TGG | 0.461468 | 3.3:-58731955 | None:intergenic |
| GAAGCATAAGGGCACTGCTT+TGG | 0.462618 | 3.3:+58732245 | MS.gene04992:intron |
| CCTCCCCGTCTCTGGATGCT+TGG | 0.465184 | 3.3:-58731968 | None:intergenic |
| AGGGATGTCTGATGTTGGAA+TGG | 0.468079 | 3.3:-58731617 | None:intergenic |
| TGCTTTGGCGTTGTAGAGCT+TGG | 0.469785 | 3.3:-58731001 | None:intergenic |
| AGGGGAGACTGATAGAGAGA+TGG | 0.472745 | 3.3:+58732101 | MS.gene04992:CDS |
| TCGTCGGATCCATTCCGAAA+AGG | 0.487048 | 3.3:+58731892 | MS.gene04992:CDS |
| CGTCGGATCCATTCCGAAAA+GGG | 0.487282 | 3.3:+58731893 | MS.gene04992:CDS |
| ATTTGCATGGTGAAGCATAA+GGG | 0.490601 | 3.3:+58732234 | MS.gene04992:intron |
| TGTCTGAGTCGTGATGAGTT+TGG | 0.492254 | 3.3:-58731699 | None:intergenic |
| AAGGGAGCTTCTGGTTGCTA+AGG | 0.496586 | 3.3:+58732302 | MS.gene04992:CDS |
| GATACCAAGCATCCAGAGAC+GGG | 0.496822 | 3.3:+58731964 | MS.gene04992:CDS |
| AGAAGCGGCAGAAGCTGCAG+CGG | 0.497737 | 3.3:+58732023 | MS.gene04992:CDS |
| GAGCTTGGCGGTGTAGAGCC+GGG | 0.499580 | 3.3:-58730986 | None:intergenic |
| TGGCCTGCTAGCTGGAGCAT+GGG | 0.500180 | 3.3:-58731764 | None:intergenic |
| GACTGATAGAGAGATGGGGT+TGG | 0.500325 | 3.3:+58732107 | MS.gene04992:CDS |
| AATCCCATGCTCCAGCTAGC+AGG | 0.507491 | 3.3:+58731761 | MS.gene04992:CDS |
| GATAGAGAGATGGGGTTGGA+AGG | 0.508067 | 3.3:+58732111 | MS.gene04992:CDS |
| TAAAGCGTGCTGGCTCTGCT+TGG | 0.510415 | 3.3:+58731581 | MS.gene04992:CDS |
| AGATGGGGTTGGAAGGGTCA+AGG | 0.511672 | 3.3:+58732118 | MS.gene04992:CDS |
| GGGATGTCTGATGTTGGAAT+GGG | 0.514310 | 3.3:-58731616 | None:intergenic |
| TTGGCCTGCTAGCTGGAGCA+TGG | 0.514758 | 3.3:-58731765 | None:intergenic |
| AAGCTTCGGCTAAAGCGTGC+TGG | 0.527008 | 3.3:+58731571 | MS.gene04992:CDS |
| AGGGAGCTTCTGGTTGCTAA+GGG | 0.527571 | 3.3:+58732303 | MS.gene04992:CDS |
| ATGCTAGTGGAGGAAATCTC+CGG | 0.536362 | 3.3:+58731836 | MS.gene04992:CDS |
| AGCAAGCGAGAGAAGCTAGC+GGG | 0.542475 | 3.3:+58730926 | MS.gene04992:CDS |
| ATGGATCGAGGTCATCTACT+TGG | 0.544070 | 3.3:-58731732 | None:intergenic |
| GTCTTTGATGATGTCTATGA+GGG | 0.544217 | 3.3:-58731044 | None:intergenic |
| GGAGCATGGGATTCATCTGA+TGG | 0.544263 | 3.3:-58731751 | None:intergenic |
| TCGAGACAGCTTCGACGATG+AGG | 0.576310 | 3.3:+58731930 | MS.gene04992:CDS |
| AAAACGAAATTATTACAAAG+TGG | 0.576401 | 3.3:-58732333 | None:intergenic |
| TTTGGCGTTGTAGAGCTTGG+CGG | 0.578554 | 3.3:-58730998 | None:intergenic |
| ATAGAGAGATGGGGTTGGAA+GGG | 0.584366 | 3.3:+58732112 | MS.gene04992:CDS |
| AGCAGGCCAAAATTCACTCG+TGG | 0.590104 | 3.3:+58731778 | MS.gene04992:CDS |
| GAATTCTTGCGTGATAATTG+TGG | 0.593473 | 3.3:-58731859 | None:intergenic |
| GATTCCTCTGAGAATGCTAG+TGG | 0.598042 | 3.3:+58731823 | MS.gene04992:CDS |
| TGATACCAAGCATCCAGAGA+CGG | 0.598650 | 3.3:+58731963 | MS.gene04992:CDS |
| GAATTCCAGTAGTGTGTCGT+CGG | 0.603076 | 3.3:+58731876 | MS.gene04992:CDS |
| TCTTGCGTGATAATTGTGGC+CGG | 0.603393 | 3.3:-58731855 | None:intergenic |
| TCCATCAACGACATCGTCGG+AGG | 0.611948 | 3.3:-58732072 | None:intergenic |
| GCAGGCCAAAATTCACTCGT+GGG | 0.618628 | 3.3:+58731779 | MS.gene04992:CDS |
| AAATCCATCAACGACATCGT+CGG | 0.618750 | 3.3:-58732075 | None:intergenic |
| GTCGTTGATGGATTTGTTAG+GGG | 0.618908 | 3.3:+58732083 | MS.gene04992:CDS |
| ATCTGCGAGAGAAGCAGTGG+CGG | 0.621972 | 3.3:+58731996 | MS.gene04992:CDS |
| TCCTCTGAGAATGCTAGTGG+AGG | 0.637328 | 3.3:+58731826 | MS.gene04992:CDS |
| ATTATCTGCGAGAGAAGCAG+TGG | 0.640834 | 3.3:+58731993 | MS.gene04992:CDS |
| TTATGAGGAAATGTCAGCTG+CGG | 0.647602 | 3.3:+58730901 | MS.gene04992:CDS |
| GGGAGACTGATAGAGAGATG+GGG | 0.649131 | 3.3:+58732103 | MS.gene04992:CDS |
| CAAGCATCCAGAGACGGGGA+GGG | 0.651075 | 3.3:+58731969 | MS.gene04992:CDS |
| CCAAGCATCCAGAGACGGGG+AGG | 0.656073 | 3.3:+58731968 | MS.gene04992:CDS |
| TTAGCGAATCAACAAAGACC+CGG | 0.663952 | 3.3:+58730968 | MS.gene04992:CDS |
| TCCTCCACTAGCATTCTCAG+AGG | 0.666057 | 3.3:-58731827 | None:intergenic |
| GGGATTCATCTGATGGATCG+AGG | 0.669034 | 3.3:-58731744 | None:intergenic |
| GAGCAAGCGAGAGAAGCTAG+CGG | 0.703074 | 3.3:+58730925 | MS.gene04992:CDS |
| ATACCAAGCATCCAGAGACG+GGG | 0.703842 | 3.3:+58731965 | MS.gene04992:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAGAAAATATTCTTTTTTT+AGG | - | chr3.3:58731323-58731342 | None:intergenic | 10.0% |
| !!! | TATTGATCAATTTTATTTTA+TGG | + | chr3.3:58731447-58731466 | MS.gene04992:intron | 10.0% |
| !! | AAAACGAAATTATTACAAAG+TGG | - | chr3.3:58732336-58732355 | None:intergenic | 20.0% |
| !! | GACATATATATAAAAAGAAG+TGG | + | chr3.3:58731134-58731153 | MS.gene04992:intron | 20.0% |
| !!! | CAAGAAAAGATTCTTTTTTT+AGG | + | chr3.3:58731234-58731253 | MS.gene04992:intron | 20.0% |
| ! | AAGGTATATATTAAGTGATG+AGG | + | chr3.3:58732137-58732156 | MS.gene04992:intron | 25.0% |
| ! | AATTAGTTAGTTACTCTACA+AGG | - | chr3.3:58731194-58731213 | None:intergenic | 25.0% |
| ! | ATTAGTTAGTTACTCTACAA+GGG | - | chr3.3:58731193-58731212 | None:intergenic | 25.0% |
| !!! | TATTTTCTTACATTTGAGAC+CGG | + | chr3.3:58731333-58731352 | MS.gene04992:intron | 25.0% |
| !!! | TTTTCTGATGATGATTATGA+AGG | + | chr3.3:58732165-58732184 | MS.gene04992:intron | 25.0% |
| AACACATCCTACAAAAACTA+TGG | - | chr3.3:58732281-58732300 | None:intergenic | 30.0% | |
| TTCATTGATATGGAAGATCT+TGG | + | chr3.3:58731533-58731552 | MS.gene04992:intron | 30.0% | |
| ! | CTGCTTCATTTTCATTGATA+TGG | + | chr3.3:58731523-58731542 | MS.gene04992:intron | 30.0% |
| ! | TTTTTGTAGGATGTGTTCAA+GGG | + | chr3.3:58732284-58732303 | MS.gene04992:CDS | 30.0% |
| AAACCAACAAAAAAGATCGC+AGG | + | chr3.3:58731071-58731090 | MS.gene04992:CDS | 35.0% | |
| AACTAACTAATTACTCCCTC+TGG | + | chr3.3:58731202-58731221 | MS.gene04992:intron | 35.0% | |
| AAGGTGAAGATGATGAAGAT+GGG | + | chr3.3:58732184-58732203 | MS.gene04992:intron | 35.0% | |
| ACACACTTGTTCTATTTGCA+TGG | + | chr3.3:58732221-58732240 | MS.gene04992:intron | 35.0% | |
| ATTTGCATGGTGAAGCATAA+GGG | + | chr3.3:58732234-58732253 | MS.gene04992:intron | 35.0% | |
| GAATTCTTGCGTGATAATTG+TGG | - | chr3.3:58731862-58731881 | None:intergenic | 35.0% | |
| TATTTGCATGGTGAAGCATA+AGG | + | chr3.3:58732233-58732252 | MS.gene04992:intron | 35.0% | |
| TCATTATACAATACTCCCTC+CGG | - | chr3.3:58731355-58731374 | None:intergenic | 35.0% | |
| ! | AAGCCTTTAAAGACAAGCTT+CGG | + | chr3.3:58731557-58731576 | MS.gene04992:CDS | 35.0% |
| ! | AGCAGAAGCTTTTCACAATT+CGG | + | chr3.3:58731655-58731674 | MS.gene04992:CDS | 35.0% |
| ! | CTTGTAGCCATAGTTTTTGT+AGG | + | chr3.3:58732271-58732290 | MS.gene04992:CDS | 35.0% |
| ! | GGAAAACCACTTCTTTTTAG+AGG | - | chr3.3:58731172-58731191 | None:intergenic | 35.0% |
| ! | GTTTTTGTAGGATGTGTTCA+AGG | + | chr3.3:58732283-58732302 | MS.gene04992:CDS | 35.0% |
| ! | TCGGGAAAGAACATTTTATG+AGG | + | chr3.3:58730886-58730905 | MS.gene04992:CDS | 35.0% |
| ! | TTCCTTCCTCTAAAAAGAAG+TGG | + | chr3.3:58731163-58731182 | MS.gene04992:intron | 35.0% |
| !! | AACCACTTCTTTTTAGAGGA+AGG | - | chr3.3:58731168-58731187 | None:intergenic | 35.0% |
| !! | ATGTCGTTGATGGATTTGTT+AGG | + | chr3.3:58732081-58732100 | MS.gene04992:CDS | 35.0% |
| !! | GTCTTTGATGATGTCTATGA+GGG | - | chr3.3:58731047-58731066 | None:intergenic | 35.0% |
| !! | TGCTGTTTGGATTTTGGATA+GGG | - | chr3.3:58731639-58731658 | None:intergenic | 35.0% |
| !! | TGTCGTTGATGGATTTGTTA+GGG | + | chr3.3:58732082-58732101 | MS.gene04992:CDS | 35.0% |
| !!! | TTACCTGCGATCTTTTTTGT+TGG | - | chr3.3:58731077-58731096 | None:intergenic | 35.0% |
| AAATCCATCAACGACATCGT+CGG | - | chr3.3:58732078-58732097 | None:intergenic | 40.0% | |
| AGGTGAAGATGATGAAGATG+GGG | + | chr3.3:58732185-58732204 | MS.gene04992:intron | 40.0% | |
| GAAGGTGAAGATGATGAAGA+TGG | + | chr3.3:58732183-58732202 | MS.gene04992:intron | 40.0% | |
| TAGCCGAAGCTTGTCTTTAA+AGG | - | chr3.3:58731563-58731582 | None:intergenic | 40.0% | |
| TGTGAAAAGCTTCTGCTGTT+TGG | - | chr3.3:58731652-58731671 | None:intergenic | 40.0% | |
| TTAGCGAATCAACAAAGACC+CGG | + | chr3.3:58730968-58730987 | MS.gene04992:CDS | 40.0% | |
| TTATGAGGAAATGTCAGCTG+CGG | + | chr3.3:58730901-58730920 | MS.gene04992:CDS | 40.0% | |
| TTCTTGCATATGAGACCAGA+GGG | - | chr3.3:58731220-58731239 | None:intergenic | 40.0% | |
| TTTCTTGCATATGAGACCAG+AGG | - | chr3.3:58731221-58731240 | None:intergenic | 40.0% | |
| ! | ATGAGGGTTCGACTTTTAGA+GGG | - | chr3.3:58731031-58731050 | None:intergenic | 40.0% |
| ! | TATGAGGGTTCGACTTTTAG+AGG | - | chr3.3:58731032-58731051 | None:intergenic | 40.0% |
| ! | TTCTTACATTTGAGACCGGA+GGG | + | chr3.3:58731337-58731356 | MS.gene04992:intron | 40.0% |
| ! | TTTCTTACATTTGAGACCGG+AGG | + | chr3.3:58731336-58731355 | MS.gene04992:intron | 40.0% |
| !! | AGCTTCTGCTGTTTGGATTT+TGG | - | chr3.3:58731645-58731664 | None:intergenic | 40.0% |
| !! | CGTCTTTGATGATGTCTATG+AGG | - | chr3.3:58731048-58731067 | None:intergenic | 40.0% |
| !! | CTGCTGTTTGGATTTTGGAT+AGG | - | chr3.3:58731640-58731659 | None:intergenic | 40.0% |
| !! | GTCGTTGATGGATTTGTTAG+GGG | + | chr3.3:58732083-58732102 | MS.gene04992:CDS | 40.0% |
| AGGGATGTCTGATGTTGGAA+TGG | - | chr3.3:58731620-58731639 | None:intergenic | 45.0% | |
| ATAGAGAGATGGGGTTGGAA+GGG | + | chr3.3:58732112-58732131 | MS.gene04992:CDS | 45.0% | |
| ATGCTAGTGGAGGAAATCTC+CGG | + | chr3.3:58731836-58731855 | MS.gene04992:CDS | 45.0% | |
| ATGGATCGAGGTCATCTACT+TGG | - | chr3.3:58731735-58731754 | None:intergenic | 45.0% | |
| ATTATCTGCGAGAGAAGCAG+TGG | + | chr3.3:58731993-58732012 | MS.gene04992:CDS | 45.0% | |
| GAATTCCAGTAGTGTGTCGT+CGG | + | chr3.3:58731876-58731895 | MS.gene04992:CDS | 45.0% | |
| GGGATGTCTGATGTTGGAAT+GGG | - | chr3.3:58731619-58731638 | None:intergenic | 45.0% | |
| TCTTGCGTGATAATTGTGGC+CGG | - | chr3.3:58731858-58731877 | None:intergenic | 45.0% | |
| TGATACCAAGCATCCAGAGA+CGG | + | chr3.3:58731963-58731982 | MS.gene04992:CDS | 45.0% | |
| TGGATAGGGATGTCTGATGT+TGG | - | chr3.3:58731625-58731644 | None:intergenic | 45.0% | |
| TGTCTGAGTCGTGATGAGTT+TGG | - | chr3.3:58731702-58731721 | None:intergenic | 45.0% | |
| ! | AAGTCACTACACGCCCTTTT+CGG | - | chr3.3:58731909-58731928 | None:intergenic | 45.0% |
| ! | GATTCCTCTGAGAATGCTAG+TGG | + | chr3.3:58731823-58731842 | MS.gene04992:CDS | 45.0% |
| ! | TGAAGATGGGGAAAGTGCAT+TGG | + | chr3.3:58732197-58732216 | MS.gene04992:intron | 45.0% |
| !! | CTTTTAGAGGGTGGTTGCTT+TGG | - | chr3.3:58731019-58731038 | None:intergenic | 45.0% |
| AGCAGGCCAAAATTCACTCG+TGG | + | chr3.3:58731778-58731797 | MS.gene04992:CDS | 50.0% | |
| AGGGGAGACTGATAGAGAGA+TGG | + | chr3.3:58732101-58732120 | MS.gene04992:CDS | 50.0% | |
| ATACCAAGCATCCAGAGACG+GGG | + | chr3.3:58731965-58731984 | MS.gene04992:CDS | 50.0% | |
| CGTCGGATCCATTCCGAAAA+GGG | + | chr3.3:58731893-58731912 | MS.gene04992:CDS | 50.0% | |
| GACTGATAGAGAGATGGGGT+TGG | + | chr3.3:58732107-58732126 | MS.gene04992:CDS | 50.0% | |
| GATACCAAGCATCCAGAGAC+GGG | + | chr3.3:58731964-58731983 | MS.gene04992:CDS | 50.0% | |
| GATAGAGAGATGGGGTTGGA+AGG | + | chr3.3:58732111-58732130 | MS.gene04992:CDS | 50.0% | |
| GATGTGTTCAAGGGAGCTTC+TGG | + | chr3.3:58732293-58732312 | MS.gene04992:CDS | 50.0% | |
| GCAGGCCAAAATTCACTCGT+GGG | + | chr3.3:58731779-58731798 | MS.gene04992:CDS | 50.0% | |
| GGAGCATGGGATTCATCTGA+TGG | - | chr3.3:58731754-58731773 | None:intergenic | 50.0% | |
| GGATGCTTGGTATCATCGTC+TGG | - | chr3.3:58731958-58731977 | None:intergenic | 50.0% | |
| GGGAGACTGATAGAGAGATG+GGG | + | chr3.3:58732103-58732122 | MS.gene04992:CDS | 50.0% | |
| GGGGAGACTGATAGAGAGAT+GGG | + | chr3.3:58732102-58732121 | MS.gene04992:CDS | 50.0% | |
| TCCTCCACTAGCATTCTCAG+AGG | - | chr3.3:58731830-58731849 | None:intergenic | 50.0% | |
| TCGTCGGATCCATTCCGAAA+AGG | + | chr3.3:58731892-58731911 | MS.gene04992:CDS | 50.0% | |
| TGCTTTGGCGTTGTAGAGCT+TGG | - | chr3.3:58731004-58731023 | None:intergenic | 50.0% | |
| TTTGGCGTTGTAGAGCTTGG+CGG | - | chr3.3:58731001-58731020 | None:intergenic | 50.0% | |
| ! | AAGGGAGCTTCTGGTTGCTA+AGG | + | chr3.3:58732302-58732321 | MS.gene04992:CDS | 50.0% |
| ! | ACTACACGCCCTTTTCGGAA+TGG | - | chr3.3:58731904-58731923 | None:intergenic | 50.0% |
| ! | AGGGAGCTTCTGGTTGCTAA+GGG | + | chr3.3:58732303-58732322 | MS.gene04992:CDS | 50.0% |
| ! | GAGCTCCCACGAGTGAATTT+TGG | - | chr3.3:58731787-58731806 | None:intergenic | 50.0% |
| ! | GGGATTCATCTGATGGATCG+AGG | - | chr3.3:58731747-58731766 | None:intergenic | 50.0% |
| ! | TCCTCTGAGAATGCTAGTGG+AGG | + | chr3.3:58731826-58731845 | MS.gene04992:CDS | 50.0% |
| !! | AGGGTTCGACTTTTAGAGGG+TGG | - | chr3.3:58731028-58731047 | None:intergenic | 50.0% |
| !! | GAAGCATAAGGGCACTGCTT+TGG | + | chr3.3:58732245-58732264 | MS.gene04992:intron | 50.0% |
| !! | GTGAATTTTGGCCTGCTAGC+TGG | - | chr3.3:58731775-58731794 | None:intergenic | 50.0% |
| AAGCTTCGGCTAAAGCGTGC+TGG | + | chr3.3:58731571-58731590 | MS.gene04992:CDS | 55.0% | |
| AATCCCATGCTCCAGCTAGC+AGG | + | chr3.3:58731761-58731780 | MS.gene04992:CDS | 55.0% | |
| ACCTCCGACGATGTCGTTGA+TGG | + | chr3.3:58732071-58732090 | MS.gene04992:CDS | 55.0% | |
| AGATGGGGTTGGAAGGGTCA+AGG | + | chr3.3:58732118-58732137 | MS.gene04992:CDS | 55.0% | |
| AGCAAGCGAGAGAAGCTAGC+GGG | + | chr3.3:58730926-58730945 | MS.gene04992:CDS | 55.0% | |
| ATCTGCGAGAGAAGCAGTGG+CGG | + | chr3.3:58731996-58732015 | MS.gene04992:CDS | 55.0% | |
| GAGCAAGCGAGAGAAGCTAG+CGG | + | chr3.3:58730925-58730944 | MS.gene04992:CDS | 55.0% | |
| TCCATCAACGACATCGTCGG+AGG | - | chr3.3:58732075-58732094 | None:intergenic | 55.0% | |
| TCGAGACAGCTTCGACGATG+AGG | + | chr3.3:58731930-58731949 | MS.gene04992:CDS | 55.0% | |
| TGGATCCGACGACACACTAC+TGG | - | chr3.3:58731884-58731903 | None:intergenic | 55.0% | |
| !! | TAAAGCGTGCTGGCTCTGCT+TGG | + | chr3.3:58731581-58731600 | MS.gene04992:CDS | 55.0% |
| AGAAGCGGCAGAAGCTGCAG+CGG | + | chr3.3:58732023-58732042 | MS.gene04992:CDS | 60.0% | |
| AGAGCTTGGCGGTGTAGAGC+CGG | - | chr3.3:58730990-58731009 | None:intergenic | 60.0% | |
| AGCAGTGGCGGCACAAGAAG+CGG | + | chr3.3:58732008-58732027 | MS.gene04992:CDS | 60.0% | |
| CAAGCATCCAGAGACGGGGA+GGG | + | chr3.3:58731969-58731988 | MS.gene04992:CDS | 60.0% | |
| GATAATGCCCTCCCCGTCTC+TGG | - | chr3.3:58731979-58731998 | None:intergenic | 60.0% | |
| TGGCCTGCTAGCTGGAGCAT+GGG | - | chr3.3:58731767-58731786 | None:intergenic | 60.0% | |
| TTGGCCTGCTAGCTGGAGCA+TGG | - | chr3.3:58731768-58731787 | None:intergenic | 60.0% | |
| AGAAGCTGCAGCGGAGGCTG+AGG | + | chr3.3:58732032-58732051 | MS.gene04992:CDS | 65.0% | |
| CCAAGCATCCAGAGACGGGG+AGG | + | chr3.3:58731968-58731987 | MS.gene04992:CDS | 65.0% | |
| CCTCCCCGTCTCTGGATGCT+TGG | - | chr3.3:58731971-58731990 | None:intergenic | 65.0% | |
| GAGCTTGGCGGTGTAGAGCC+GGG | - | chr3.3:58730989-58731008 | None:intergenic | 65.0% | |
| GCTGAGGCTGAGGCTGCAAC+AGG | + | chr3.3:58732048-58732067 | MS.gene04992:CDS | 65.0% | |
| AGCGGCAGAAGCTGCAGCGG+AGG | + | chr3.3:58732026-58732045 | MS.gene04992:CDS | 70.0% | |
| TGCAGCGGAGGCTGAGGCTG+AGG | + | chr3.3:58732038-58732057 | MS.gene04992:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 58730875 | 58732357 | 58730875 | ID=MS.gene04992 |
| chr3.3 | mRNA | 58730875 | 58732357 | 58730875 | ID=MS.gene04992.t1;Parent=MS.gene04992 |
| chr3.3 | exon | 58730875 | 58731092 | 58730875 | ID=MS.gene04992.t1.exon1;Parent=MS.gene04992.t1 |
| chr3.3 | CDS | 58730875 | 58731092 | 58730875 | ID=cds.MS.gene04992.t1;Parent=MS.gene04992.t1 |
| chr3.3 | exon | 58731549 | 58732139 | 58731549 | ID=MS.gene04992.t1.exon2;Parent=MS.gene04992.t1 |
| chr3.3 | CDS | 58731549 | 58732139 | 58731549 | ID=cds.MS.gene04992.t1;Parent=MS.gene04992.t1 |
| chr3.3 | exon | 58732249 | 58732357 | 58732249 | ID=MS.gene04992.t1.exon3;Parent=MS.gene04992.t1 |
| chr3.3 | CDS | 58732249 | 58732357 | 58732249 | ID=cds.MS.gene04992.t1;Parent=MS.gene04992.t1 |
| Gene Sequence |
| Protein sequence |
