Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049969.t1 | XP_003615317.1 | 97.7 | 257 | 6 | 0 | 1 | 257 | 1 | 257 | 3.20E-138 | 501.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049969.t1 | Q9LRH6 | 62.8 | 180 | 65 | 1 | 72 | 249 | 81 | 260 | 2.7e-53 | 210.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049969.t1 | G7JYF5 | 97.7 | 257 | 6 | 0 | 1 | 257 | 1 | 257 | 2.3e-138 | 501.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene049969.t1 | TF | C2C2-GATA |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049969 | MS.gene21306 | 0.808246 | 3.40E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049969.t1 | MTR_5g066510 | 97.665 | 257 | 6 | 0 | 1 | 257 | 1 | 257 | 0.0 | 526 |
| MS.gene049969.t1 | MTR_5g066510 | 97.525 | 202 | 5 | 0 | 1 | 202 | 1 | 202 | 1.47e-147 | 411 |
| MS.gene049969.t1 | MTR_3g100050 | 65.455 | 220 | 70 | 4 | 46 | 260 | 42 | 260 | 2.67e-92 | 275 |
| MS.gene049969.t1 | MTR_3g100040 | 54.737 | 190 | 75 | 6 | 74 | 257 | 69 | 253 | 1.62e-57 | 187 |
| MS.gene049969.t1 | MTR_4g093730 | 51.208 | 207 | 80 | 8 | 53 | 245 | 20 | 219 | 3.35e-56 | 184 |
| MS.gene049969.t1 | MTR_3g100040 | 59.524 | 126 | 45 | 2 | 135 | 257 | 27 | 149 | 9.38e-46 | 154 |
| MS.gene049969.t1 | MTR_1g061610 | 67.647 | 68 | 21 | 1 | 39 | 106 | 42 | 108 | 6.11e-24 | 93.6 |
| MS.gene049969.t1 | MTR_4g008070 | 53.659 | 82 | 24 | 4 | 167 | 237 | 1 | 79 | 2.60e-18 | 78.2 |
| MS.gene049969.t1 | MTR_3g060200 | 37.113 | 97 | 57 | 2 | 159 | 252 | 4 | 99 | 1.65e-14 | 73.2 |
| MS.gene049969.t1 | MTR_3g060200 | 38.235 | 102 | 56 | 3 | 159 | 257 | 4 | 101 | 1.88e-14 | 72.4 |
| MS.gene049969.t1 | MTR_3g060200 | 37.113 | 97 | 57 | 2 | 159 | 252 | 4 | 99 | 2.17e-14 | 73.2 |
| MS.gene049969.t1 | MTR_3g060200 | 37.113 | 97 | 57 | 2 | 159 | 252 | 4 | 99 | 2.57e-14 | 72.4 |
| MS.gene049969.t1 | MTR_4g008090 | 50.000 | 80 | 30 | 3 | 93 | 166 | 12 | 87 | 2.40e-12 | 62.8 |
| MS.gene049969.t1 | MTR_4g108880 | 52.459 | 61 | 27 | 1 | 135 | 195 | 505 | 563 | 3.92e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049969.t1 | AT4G24470 | 62.778 | 180 | 65 | 1 | 72 | 249 | 81 | 260 | 6.91e-74 | 228 |
| MS.gene049969.t1 | AT4G24470 | 62.778 | 180 | 65 | 1 | 72 | 249 | 81 | 260 | 6.91e-74 | 228 |
| MS.gene049969.t1 | AT4G24470 | 62.778 | 180 | 65 | 1 | 72 | 249 | 81 | 260 | 8.42e-74 | 228 |
| MS.gene049969.t1 | AT1G51600 | 59.893 | 187 | 64 | 4 | 70 | 245 | 79 | 265 | 1.89e-68 | 214 |
| MS.gene049969.t1 | AT1G51600 | 59.893 | 187 | 64 | 4 | 70 | 245 | 79 | 265 | 1.89e-68 | 214 |
| MS.gene049969.t1 | AT3G21175 | 51.452 | 241 | 84 | 7 | 38 | 245 | 21 | 261 | 2.35e-68 | 214 |
| MS.gene049969.t1 | AT3G21175 | 51.667 | 240 | 83 | 7 | 38 | 245 | 21 | 259 | 2.16e-67 | 211 |
| MS.gene049969.t1 | AT3G21175 | 47.802 | 182 | 69 | 6 | 38 | 194 | 21 | 201 | 6.57e-38 | 133 |
| MS.gene049969.t1 | AT2G46670 | 50.909 | 55 | 27 | 0 | 129 | 183 | 126 | 180 | 5.65e-11 | 60.5 |
Find 75 sgRNAs with CRISPR-Local
Find 338 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTCTCGTGTCTATTAAAA+AGG | 0.221344 | 5.3:-52298846 | None:intergenic |
| AAACTTTGAAGTGCAAATTC+AGG | 0.278085 | 5.3:-52293750 | None:intergenic |
| ATGGCCCTCGCCGCATCATT+GGG | 0.283489 | 5.3:-52296810 | None:intergenic |
| TCCAACTCCGATGCTGTTTA+CGG | 0.309806 | 5.3:+52293711 | MS.gene049969:CDS |
| GATGGCCCTCGCCGCATCAT+TGG | 0.329482 | 5.3:-52296811 | None:intergenic |
| AAATTCAATTCAAAGCTATA+TGG | 0.341152 | 5.3:+52298814 | MS.gene049969:CDS |
| TCGCTTTCGCCGGCGGTGAT+TGG | 0.347965 | 5.3:-52293615 | None:intergenic |
| CTGGTCTGTACCACAACTAT+TGG | 0.364949 | 5.3:-52296538 | None:intergenic |
| GGTCACTTTGCAATGCTTGT+GGG | 0.405446 | 5.3:+52296842 | MS.gene049969:CDS |
| GGCGAAAGCGACGACGGTTC+CGG | 0.410307 | 5.3:+52293627 | MS.gene049969:CDS |
| ATGATGCGGCGAGGGCCATC+TGG | 0.424046 | 5.3:+52296814 | MS.gene049969:CDS |
| AAGCCTCATTACTTAGGTTC+CGG | 0.424048 | 5.3:+52295021 | MS.gene049969:CDS |
| GTCGATGCCGGCGTCGGGAC+CGG | 0.425728 | 5.3:-52293646 | None:intergenic |
| CAGCTTACGCTGTCGTTTCG+TGG | 0.436824 | 5.3:+52293786 | MS.gene049969:CDS |
| AGGTCACTTTGCAATGCTTG+TGG | 0.439332 | 5.3:+52296841 | MS.gene049969:CDS |
| TTTCTGATGGACTGGCATCC+TGG | 0.442732 | 5.3:-52296569 | None:intergenic |
| ATCTACTGTATCTGTTGAGC+AGG | 0.453113 | 5.3:+52297673 | MS.gene049969:CDS |
| TCAATCGGTGTTGTTACTGT+TGG | 0.455881 | 5.3:+52294066 | MS.gene049969:CDS |
| CAATCGGTGTTGTTACTGTT+GGG | 0.455920 | 5.3:+52294067 | MS.gene049969:CDS |
| AGATAATTCCTGATGTCTCT+TGG | 0.456240 | 5.3:-52297654 | None:intergenic |
| ATCTTTCTTTCCTCTTCTGC+CGG | 0.458420 | 5.3:-52295040 | None:intergenic |
| ATGTAGGATGCAGCGAAAGA+AGG | 0.464044 | 5.3:+52296482 | MS.gene049969:intron |
| TGAGCGTCGATGCCGGCGTC+GGG | 0.466145 | 5.3:-52293651 | None:intergenic |
| CGGTGCCTCAACAAAGTTTG+AGG | 0.475750 | 5.3:+52294122 | MS.gene049969:CDS |
| ATTGAGAATCGAACCTTAGC+AGG | 0.477071 | 5.3:-52293837 | None:intergenic |
| CAAGCATTGCAAAGTGACCT+TGG | 0.478461 | 5.3:-52296838 | None:intergenic |
| GCCGTAAACAGCATCGGAGT+TGG | 0.479472 | 5.3:-52293712 | None:intergenic |
| CAATTCAAAGCTATATGGAT+TGG | 0.479771 | 5.3:+52298819 | MS.gene049969:CDS |
| TGTAGGATGCAGCGAAAGAA+GGG | 0.482115 | 5.3:+52296483 | MS.gene049969:intron |
| TGGCATCCTGGCTAGAATCC+TGG | 0.494476 | 5.3:-52296557 | None:intergenic |
| TCAGTACGAAACGCACGGTA+TGG | 0.494591 | 5.3:+52293683 | MS.gene049969:CDS |
| TGACTCTGTTACGCCTGCTA+AGG | 0.495608 | 5.3:+52293824 | MS.gene049969:CDS |
| ACCGCATTCACACCAGCATC+AGG | 0.496179 | 5.3:-52294103 | None:intergenic |
| ATCGAGAAGCCTCATTACTT+AGG | 0.501589 | 5.3:+52295015 | MS.gene049969:CDS |
| TTTCATGTTACAGGTTCAAT+CGG | 0.502821 | 5.3:+52294051 | MS.gene049969:intron |
| GGAACCGTCGTCGCTTTCGC+CGG | 0.503198 | 5.3:-52293625 | None:intergenic |
| TACTTAGGTTCCGGCAGAAG+AGG | 0.507196 | 5.3:+52295030 | MS.gene049969:CDS |
| GACGGTTCCGGTCCCGACGC+CGG | 0.509123 | 5.3:+52293639 | MS.gene049969:CDS |
| ACTACATCTAAGAAACAAGA+TGG | 0.513677 | 5.3:+52296513 | MS.gene049969:CDS |
| TCCGATGCTGTTTACGGCAA+CGG | 0.517634 | 5.3:+52293717 | MS.gene049969:CDS |
| TTGAGCGTCGATGCCGGCGT+CGG | 0.518484 | 5.3:-52293652 | None:intergenic |
| ATTGGTACTGTGGTGTTCAA+AGG | 0.519474 | 5.3:-52293597 | None:intergenic |
| CGACCCCAATGATGCGGCGA+GGG | 0.521861 | 5.3:+52296806 | MS.gene049969:CDS |
| AGACCTTTCCAAGAGACATC+AGG | 0.523306 | 5.3:+52297646 | MS.gene049969:CDS |
| TCACGAGATTTCTGATGGAC+TGG | 0.530433 | 5.3:-52296577 | None:intergenic |
| GGTTGAGAGTGTTCGTACAT+TGG | 0.539771 | 5.3:-52293576 | None:intergenic |
| ACCGTCGTCGCTTTCGCCGG+CGG | 0.540258 | 5.3:-52293622 | None:intergenic |
| CAAAGTGACCTTGGACCAGA+TGG | 0.549647 | 5.3:-52296829 | None:intergenic |
| TGAGAGTGTTCGTACATTGG+TGG | 0.550890 | 5.3:-52293573 | None:intergenic |
| TTGATGTTGAGCGTCGATGC+CGG | 0.559465 | 5.3:-52293658 | None:intergenic |
| TACAGACCAGGATTCTAGCC+AGG | 0.560530 | 5.3:+52296551 | MS.gene049969:CDS |
| CAAGCTCACGAGATTTCTGA+TGG | 0.565628 | 5.3:-52296582 | None:intergenic |
| CAATAGTTGTGGTACAGACC+AGG | 0.567890 | 5.3:+52296539 | MS.gene049969:CDS |
| GGATGTGAACAACCTGATGC+TGG | 0.568670 | 5.3:+52294091 | MS.gene049969:CDS |
| CTGCCGGAACCTAAGTAATG+AGG | 0.570375 | 5.3:-52295024 | None:intergenic |
| ATTCCTGATGTCTCTTGGAA+AGG | 0.575092 | 5.3:-52297649 | None:intergenic |
| GGTGCCTCAACAAAGTTTGA+GGG | 0.580121 | 5.3:+52294123 | MS.gene049969:CDS |
| GCCGTTGCCGTAAACAGCAT+CGG | 0.590158 | 5.3:-52293718 | None:intergenic |
| GGCGAGGGCCATCTGGTCCA+AGG | 0.590488 | 5.3:+52296821 | MS.gene049969:CDS |
| CAAGATGGGTCCAATAGTTG+TGG | 0.595326 | 5.3:+52296528 | MS.gene049969:CDS |
| TTAAATAGTTGCACACATTG+TGG | 0.601041 | 5.3:+52296769 | MS.gene049969:intron |
| TCGGTGTTGTTACTGTTGGG+TGG | 0.618046 | 5.3:+52294070 | MS.gene049969:CDS |
| TACGTCAAGAAGTTGCACTC+AGG | 0.620095 | 5.3:+52295090 | MS.gene049969:CDS |
| ACCACCCTCAAACTTTGTTG+AGG | 0.626395 | 5.3:-52294127 | None:intergenic |
| ACCGCCGGCGAAAGCGACGA+CGG | 0.634534 | 5.3:+52293621 | MS.gene049969:CDS |
| CTACATCTAAGAAACAAGAT+GGG | 0.649224 | 5.3:+52296514 | MS.gene049969:CDS |
| CAAAATCGACCCCAATGATG+CGG | 0.651595 | 5.3:+52296800 | MS.gene049969:CDS |
| ACCACAGTACCAATCACCGC+CGG | 0.655305 | 5.3:+52293606 | MS.gene049969:CDS |
| GCCTCAACAAAGTTTGAGGG+TGG | 0.655336 | 5.3:+52294126 | MS.gene049969:CDS |
| TCGACCCCAATGATGCGGCG+AGG | 0.660240 | 5.3:+52296805 | MS.gene049969:CDS |
| GATGCTGTTTACGGCAACGG+CGG | 0.661829 | 5.3:+52293720 | MS.gene049969:CDS |
| ACCTGATGCTGGTGTGAATG+CGG | 0.662406 | 5.3:+52294102 | MS.gene049969:CDS |
| GCCGGCGGTGATTGGTACTG+TGG | 0.669157 | 5.3:-52293607 | None:intergenic |
| TGGCCCTCGCCGCATCATTG+GGG | 0.672900 | 5.3:-52296809 | None:intergenic |
| CAAATTCAGTACGAAACGCA+CGG | 0.681403 | 5.3:+52293678 | MS.gene049969:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAATTTAATTTTTTATTA+AGG | + | chr5.3:52294796-52294815 | MS.gene049969:intron | 0.0% |
| !! | TAAATATATCAAAATACATT+GGG | - | chr5.3:52298161-52298180 | None:intergenic | 10.0% |
| !!! | AATTTTTTATTAAGGTATTT+TGG | + | chr5.3:52294804-52294823 | MS.gene049969:intron | 10.0% |
| !!! | TTTATTTTATGTTTAAATGT+AGG | + | chr5.3:52296466-52296485 | MS.gene049969:intron | 10.0% |
| !!! | TTTGATTAAAATTTGTTTAA+GGG | - | chr5.3:52297799-52297818 | None:intergenic | 10.0% |
| !!! | TTTTGATTAAAATTTGTTTA+AGG | - | chr5.3:52297800-52297819 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAAAAGCCTT+TGG | - | chr5.3:52296899-52296918 | None:intergenic | 15.0% |
| !! | AAATATATCAAAATACATTG+GGG | - | chr5.3:52298160-52298179 | None:intergenic | 15.0% |
| !! | AATAAACAAAATAAAATCAC+AGG | - | chr5.3:52293878-52293897 | None:intergenic | 15.0% |
| !! | AATGGAAATTATTAATTCTT+TGG | + | chr5.3:52294943-52294962 | MS.gene049969:intron | 15.0% |
| !! | ATGGAAATTATTAATTCTTT+GGG | + | chr5.3:52294944-52294963 | MS.gene049969:intron | 15.0% |
| !! | CATTATTCATAAATCATAAT+AGG | + | chr5.3:52294467-52294486 | MS.gene049969:intron | 15.0% |
| !! | CTAAATATATCAAAATACAT+TGG | - | chr5.3:52298162-52298181 | None:intergenic | 15.0% |
| !!! | AGTTGAATTTTTTAGTTATT+TGG | + | chr5.3:52294008-52294027 | MS.gene049969:intron | 15.0% |
| !!! | CTTAATCTTGTATTTTTTAA+TGG | + | chr5.3:52296355-52296374 | MS.gene049969:intron | 15.0% |
| !!! | GTTGAATTTTTTAGTTATTT+GGG | + | chr5.3:52294009-52294028 | MS.gene049969:intron | 15.0% |
| !!! | TCAGAACAAAAAATATATTT+TGG | - | chr5.3:52296626-52296645 | None:intergenic | 15.0% |
| !!! | TGTTTATTATTGATTTTTCT+TGG | + | chr5.3:52293890-52293909 | MS.gene049969:intron | 15.0% |
| !! | AAATCTAGATGAAATTACAT+GGG | + | chr5.3:52298188-52298207 | MS.gene049969:intron | 20.0% |
| !! | AAATTATATCTGATACGTAT+CGG | - | chr5.3:52294612-52294631 | None:intergenic | 20.0% |
| !! | AAATTCAATTCAAAGCTATA+TGG | + | chr5.3:52298814-52298833 | MS.gene049969:CDS | 20.0% |
| !! | AAGAGAATAATATAACTGAA+TGG | + | chr5.3:52295282-52295301 | MS.gene049969:intron | 20.0% |
| !! | ATACAACAACAGATATTTAT+GGG | + | chr5.3:52295610-52295629 | MS.gene049969:intron | 20.0% |
| !! | ATCTATACTATAAAGGAAAT+AGG | + | chr5.3:52297739-52297758 | MS.gene049969:intron | 20.0% |
| !! | ATTTGAATATGCATTAGATT+TGG | + | chr5.3:52294231-52294250 | MS.gene049969:intron | 20.0% |
| !! | CATAAAATAAAGAGTGAAAT+TGG | - | chr5.3:52296457-52296476 | None:intergenic | 20.0% |
| !! | CATCATAATCTATACTATAA+AGG | + | chr5.3:52297732-52297751 | MS.gene049969:intron | 20.0% |
| !! | CTATGAGATATAAATTATTG+AGG | - | chr5.3:52296181-52296200 | None:intergenic | 20.0% |
| !! | TAAACAAGCAATTTAAAGAA+TGG | - | chr5.3:52296752-52296771 | None:intergenic | 20.0% |
| !! | TAAATCTAGATGAAATTACA+TGG | + | chr5.3:52298187-52298206 | MS.gene049969:intron | 20.0% |
| !! | TATACAACAACAGATATTTA+TGG | + | chr5.3:52295609-52295628 | MS.gene049969:intron | 20.0% |
| !! | TGAAAATAATTGTATGTAAG+AGG | - | chr5.3:52295388-52295407 | None:intergenic | 20.0% |
| !! | TTTATTACATAGAATCATGT+TGG | + | chr5.3:52295419-52295438 | MS.gene049969:intron | 20.0% |
| !! | TTTGAATATGCATTAGATTT+GGG | + | chr5.3:52294232-52294251 | MS.gene049969:intron | 20.0% |
| !!! | ACGTATCAGATATAATTTTA+TGG | + | chr5.3:52294614-52294633 | MS.gene049969:intron | 20.0% |
| !!! | ATTATTAATTCTTTGGGTTT+TGG | + | chr5.3:52294950-52294969 | MS.gene049969:intron | 20.0% |
| !!! | GCTATTTTAGATATTTTGAA+AGG | + | chr5.3:52297213-52297232 | MS.gene049969:intron | 20.0% |
| !!! | TATAAAAATGTATTGATGAG+AGG | - | chr5.3:52296332-52296351 | None:intergenic | 20.0% |
| !!! | TATTTCTTGATTTTTTAGTC+CGG | - | chr5.3:52296000-52296019 | None:intergenic | 20.0% |
| !!! | TCTCATCAATACATTTTTAT+AGG | + | chr5.3:52296331-52296350 | MS.gene049969:intron | 20.0% |
| !!! | TTGTTTCTAAACTAAACAAT+AGG | - | chr5.3:52296046-52296065 | None:intergenic | 20.0% |
| !!! | TTTGGGAATATCAAAATTTT+GGG | + | chr5.3:52297370-52297389 | MS.gene049969:intron | 20.0% |
| !!! | TTTGTTGTGAAACAAATTTA+TGG | - | chr5.3:52297299-52297318 | None:intergenic | 20.0% |
| !!! | TTTTTTGAAAATTTGTCTGT+GGG | + | chr5.3:52296918-52296937 | MS.gene049969:intron | 20.0% |
| !!! | TTTTTTTGAAAATTTGTCTG+TGG | + | chr5.3:52296917-52296936 | MS.gene049969:intron | 20.0% |
| ! | AAGATAAAGCAAAACAAACA+CGG | - | chr5.3:52297148-52297167 | None:intergenic | 25.0% |
| ! | ATAAGTACTACTACTATCAT+GGG | - | chr5.3:52294657-52294676 | None:intergenic | 25.0% |
| ! | CAAGCAAAAAAATGGTAAAA+TGG | - | chr5.3:52297918-52297937 | None:intergenic | 25.0% |
| ! | CTTATCAACAAATTTAACAG+AGG | - | chr5.3:52295753-52295772 | None:intergenic | 25.0% |
| ! | GTATATATCAGTTAGTTATG+AGG | - | chr5.3:52298476-52298495 | None:intergenic | 25.0% |
| ! | TGAGAATCAAAATCATTTGA+AGG | - | chr5.3:52295866-52295885 | None:intergenic | 25.0% |
| ! | TTAATTGTTTGATACTTTCC+AGG | - | chr5.3:52294561-52294580 | None:intergenic | 25.0% |
| ! | TTGAGAAAAGAAAGAAACAT+TGG | - | chr5.3:52298722-52298741 | None:intergenic | 25.0% |
| ! | TTTATATCTCATAGAGTGAA+AGG | + | chr5.3:52296187-52296206 | MS.gene049969:intron | 25.0% |
| !! | AATGTTTCTTTCTTTTCTCA+AGG | + | chr5.3:52298721-52298740 | MS.gene049969:intron | 25.0% |
| !! | AGTACTTATGATTTCCTTTT+TGG | + | chr5.3:52294668-52294687 | MS.gene049969:intron | 25.0% |
| !! | ATAAAGGAAATAGGTTGTTT+TGG | + | chr5.3:52297748-52297767 | MS.gene049969:intron | 25.0% |
| !! | ATTTTGTCTGGATATACTTT+TGG | + | chr5.3:52298232-52298251 | MS.gene049969:intron | 25.0% |
| !! | GTTTGGGAATATCAAAATTT+TGG | + | chr5.3:52297369-52297388 | MS.gene049969:intron | 25.0% |
| !! | TGTAGTTGACTATATTTTGT+AGG | - | chr5.3:52294996-52295015 | None:intergenic | 25.0% |
| !! | TGTTTAAGGGTATAATTGAA+AGG | - | chr5.3:52297786-52297805 | None:intergenic | 25.0% |
| !! | TTTTGTCTGGATATACTTTT+GGG | + | chr5.3:52298233-52298252 | MS.gene049969:intron | 25.0% |
| !!! | ATATTGCTTTTTGAACTTTG+TGG | + | chr5.3:52297404-52297423 | MS.gene049969:intron | 25.0% |
| !!! | GATAATTCATATAGTTTTGC+TGG | + | chr5.3:52298566-52298585 | MS.gene049969:intron | 25.0% |
| !!! | GATGCATTGTTATTTCATAT+TGG | - | chr5.3:52296686-52296705 | None:intergenic | 25.0% |
| !!! | TAAAGGAAATAGGTTGTTTT+GGG | + | chr5.3:52297749-52297768 | MS.gene049969:intron | 25.0% |
| !!! | TTCTTTTAAAACTTGTCAGA+GGG | + | chr5.3:52297433-52297452 | MS.gene049969:intron | 25.0% |
| !!! | TTTAATGGACTAAAAACTGA+CGG | + | chr5.3:52296370-52296389 | MS.gene049969:intron | 25.0% |
| !!! | TTTCTTTTAAAACTTGTCAG+AGG | + | chr5.3:52297432-52297451 | MS.gene049969:intron | 25.0% |
| AAAATCGAATTATCGTCTCT+TGG | + | chr5.3:52297484-52297503 | MS.gene049969:intron | 30.0% | |
| AAAGAAAACACGATCATACT+GGG | - | chr5.3:52295353-52295372 | None:intergenic | 30.0% | |
| AAATCGAATTATCGTCTCTT+GGG | + | chr5.3:52297485-52297504 | MS.gene049969:intron | 30.0% | |
| AAGTTGTATCTGCATGATAT+GGG | - | chr5.3:52298755-52298774 | None:intergenic | 30.0% | |
| ACAAGCAATTTAAAGAATGG+TGG | - | chr5.3:52296749-52296768 | None:intergenic | 30.0% | |
| ACTACATCTAAGAAACAAGA+TGG | + | chr5.3:52296513-52296532 | MS.gene049969:CDS | 30.0% | |
| AGGAGTGGATATATTGATAA+TGG | + | chr5.3:52294382-52294401 | MS.gene049969:intron | 30.0% | |
| ATACGTGCTTCATAGATAAT+AGG | + | chr5.3:52294898-52294917 | MS.gene049969:intron | 30.0% | |
| ATACTTGACATGATAAGGAT+AGG | - | chr5.3:52294880-52294899 | None:intergenic | 30.0% | |
| ATAGAATCATGTTGGCATTT+AGG | + | chr5.3:52295427-52295446 | MS.gene049969:intron | 30.0% | |
| ATCACAACAACTTTGATGTA+AGG | - | chr5.3:52298634-52298653 | None:intergenic | 30.0% | |
| ATCTAGTGGTATATAATGTC+TGG | + | chr5.3:52297326-52297345 | MS.gene049969:intron | 30.0% | |
| ATGTTCCACTTTCTCTTATT+TGG | + | chr5.3:52296408-52296427 | MS.gene049969:intron | 30.0% | |
| ATTTACCAATTCCTATGTTG+AGG | - | chr5.3:52294409-52294428 | None:intergenic | 30.0% | |
| ATTTATGAGCTCTGTCTATT+TGG | + | chr5.3:52297191-52297210 | MS.gene049969:intron | 30.0% | |
| ATTTGTGTGCAATTGGATTT+AGG | + | chr5.3:52298535-52298554 | MS.gene049969:intron | 30.0% | |
| CAACAAAATGAAGAATCTAG+TGG | + | chr5.3:52297312-52297331 | MS.gene049969:intron | 30.0% | |
| CAATTCAAAGCTATATGGAT+TGG | + | chr5.3:52298819-52298838 | MS.gene049969:CDS | 30.0% | |
| CATAAGTACTACTACTATCA+TGG | - | chr5.3:52294658-52294677 | None:intergenic | 30.0% | |
| CTAAGTTATCCTCAAATTCT+CGG | - | chr5.3:52295913-52295932 | None:intergenic | 30.0% | |
| CTACATCTAAGAAACAAGAT+GGG | + | chr5.3:52296514-52296533 | MS.gene049969:CDS | 30.0% | |
| CTCAAAAAATGCCAAAGTAT+TGG | + | chr5.3:52294506-52294525 | MS.gene049969:intron | 30.0% | |
| CTGTTGTTGTATAGTCAATT+TGG | - | chr5.3:52295602-52295621 | None:intergenic | 30.0% | |
| GAAAATAACACACAAAACCA+AGG | - | chr5.3:52295803-52295822 | None:intergenic | 30.0% | |
| GATTAATGTTCAAGTGCAAA+TGG | + | chr5.3:52294925-52294944 | MS.gene049969:intron | 30.0% | |
| GGGAACTGTTAATAATAAAC+TGG | - | chr5.3:52297583-52297602 | None:intergenic | 30.0% | |
| TACTAGCAAATAGTTGTAGA+TGG | - | chr5.3:52298023-52298042 | None:intergenic | 30.0% | |
| TCACAACAACTTTGATGTAA+GGG | - | chr5.3:52298633-52298652 | None:intergenic | 30.0% | |
| TGGGATTGAAAATTCGTATT+TGG | + | chr5.3:52294028-52294047 | MS.gene049969:intron | 30.0% | |
| TGGTGTATGCTATATGTAAT+TGG | + | chr5.3:52296241-52296260 | MS.gene049969:intron | 30.0% | |
| TTAAATAGTTGCACACATTG+TGG | + | chr5.3:52296769-52296788 | MS.gene049969:intron | 30.0% | |
| TTTCAACAACTTGACTAAAC+TGG | + | chr5.3:52298313-52298332 | MS.gene049969:intron | 30.0% | |
| TTTCATGTTACAGGTTCAAT+CGG | + | chr5.3:52294051-52294070 | MS.gene049969:intron | 30.0% | |
| ! | ACTATTTGCTAGTACTATAC+TGG | + | chr5.3:52298029-52298048 | MS.gene049969:intron | 30.0% |
| ! | AGACGATAATTCGATTTTTG+AGG | - | chr5.3:52297482-52297501 | None:intergenic | 30.0% |
| ! | ATTTTCAACATGTTACAAGC+TGG | - | chr5.3:52294206-52294225 | None:intergenic | 30.0% |
| ! | CAATTTCAACTTCGTTGATT+TGG | + | chr5.3:52295633-52295652 | MS.gene049969:intron | 30.0% |
| ! | CTTATGATTTCCTTTTTGGA+CGG | + | chr5.3:52294672-52294691 | MS.gene049969:intron | 30.0% |
| ! | GATATAATTTTATGGTGCTC+CGG | + | chr5.3:52294622-52294641 | MS.gene049969:intron | 30.0% |
| ! | GTATAGTCAATTTGGTAACA+GGG | - | chr5.3:52295594-52295613 | None:intergenic | 30.0% |
| ! | TGTATAGTCAATTTGGTAAC+AGG | - | chr5.3:52295595-52295614 | None:intergenic | 30.0% |
| ! | TGTTAGTTTCTTGTCTACTA+TGG | - | chr5.3:52296083-52296102 | None:intergenic | 30.0% |
| ! | TTCATTTATGCCCTTTTGAT+TGG | + | chr5.3:52295774-52295793 | MS.gene049969:intron | 30.0% |
| !! | AAACTTTGAAGTGCAAATTC+AGG | - | chr5.3:52293753-52293772 | None:intergenic | 30.0% |
| !! | AGATATTTTGAAAGGTCTTG+TGG | + | chr5.3:52297221-52297240 | MS.gene049969:intron | 30.0% |
| !! | AGGGTCTGACAATTTAATTT+TGG | + | chr5.3:52295568-52295587 | MS.gene049969:intron | 30.0% |
| !! | CTTTTTAATTGTGGAGGAAT+TGG | + | chr5.3:52295690-52295709 | MS.gene049969:intron | 30.0% |
| !! | TTAAATGCTTGTTATGTCCA+GGG | - | chr5.3:52298667-52298686 | None:intergenic | 30.0% |
| !!! | CTTTGGCATTTTTTGAGTAA+CGG | - | chr5.3:52294503-52294522 | None:intergenic | 30.0% |
| !!! | GCTTGTTTTTACTGTTGTTA+TGG | + | chr5.3:52296600-52296619 | MS.gene049969:intron | 30.0% |
| !!! | TTTGGCATTTTTTGAGTAAC+GGG | - | chr5.3:52294502-52294521 | None:intergenic | 30.0% |
| AACCTATACTATTGAGAACC+TGG | + | chr5.3:52295666-52295685 | MS.gene049969:intron | 35.0% | |
| AAGAGCCAAATAAGAGAAAG+TGG | - | chr5.3:52296416-52296435 | None:intergenic | 35.0% | |
| AAGGTTCGATTCTCAATTGT+TGG | + | chr5.3:52293843-52293862 | MS.gene049969:intron | 35.0% | |
| AATCGAATTATCGTCTCTTG+GGG | + | chr5.3:52297486-52297505 | MS.gene049969:intron | 35.0% | |
| ACTTGACTAAACTGGTAAAC+TGG | + | chr5.3:52298321-52298340 | MS.gene049969:intron | 35.0% | |
| AGATAATTCCTGATGTCTCT+TGG | - | chr5.3:52297657-52297676 | None:intergenic | 35.0% | |
| AGGAATTGGTAAATTATGCG+CGG | + | chr5.3:52294415-52294434 | MS.gene049969:intron | 35.0% | |
| AGTCATCGCAAGCAAAAAAA+TGG | - | chr5.3:52297926-52297945 | None:intergenic | 35.0% | |
| ATACTTTCCAGGTACATATC+AGG | - | chr5.3:52294550-52294569 | None:intergenic | 35.0% | |
| ATATCTCATAGAGTGAAAGG+TGG | + | chr5.3:52296190-52296209 | MS.gene049969:intron | 35.0% | |
| ATGCATATCCAAGATACATG+GGG | - | chr5.3:52296154-52296173 | None:intergenic | 35.0% | |
| ATTAGTTGACCGAGAATTTG+AGG | + | chr5.3:52295901-52295920 | MS.gene049969:intron | 35.0% | |
| CAAAGAAAACACGATCATAC+TGG | - | chr5.3:52295354-52295373 | None:intergenic | 35.0% | |
| CAAGTTGTATCTGCATGATA+TGG | - | chr5.3:52298756-52298775 | None:intergenic | 35.0% | |
| CACGTATACTTGACATGATA+AGG | - | chr5.3:52294885-52294904 | None:intergenic | 35.0% | |
| CATATCATGCAGATACAACT+TGG | + | chr5.3:52298754-52298773 | MS.gene049969:intron | 35.0% | |
| CATGCATATCCAAGATACAT+GGG | - | chr5.3:52296155-52296174 | None:intergenic | 35.0% | |
| CGAGAATTTGAGGATAACTT+AGG | + | chr5.3:52295911-52295930 | MS.gene049969:intron | 35.0% | |
| GAATGTTGTTCTTTGACTAG+AGG | - | chr5.3:52296132-52296151 | None:intergenic | 35.0% | |
| GATTCACAGTTGAACGAATT+AGG | - | chr5.3:52297542-52297561 | None:intergenic | 35.0% | |
| TAGGTTAGGGGATATAAAGA+TGG | + | chr5.3:52294341-52294360 | MS.gene049969:intron | 35.0% | |
| TCAACAATACCTGTAGGTTA+GGG | + | chr5.3:52294328-52294347 | MS.gene049969:intron | 35.0% | |
| TCATCATGCGAATGATGATT+GGG | + | chr5.3:52295179-52295198 | MS.gene049969:intron | 35.0% | |
| TCATGCATATCCAAGATACA+TGG | - | chr5.3:52296156-52296175 | None:intergenic | 35.0% | |
| TGCAAATTCCAATGCAATGA+AGG | - | chr5.3:52297016-52297035 | None:intergenic | 35.0% | |
| TTCATCATGCGAATGATGAT+TGG | + | chr5.3:52295178-52295197 | MS.gene049969:intron | 35.0% | |
| TTGGGGAAAACAACAAAATC+AGG | - | chr5.3:52298143-52298162 | None:intergenic | 35.0% | |
| ! | ATCTTAAGTACCGTCCAAAA+AGG | - | chr5.3:52294685-52294704 | None:intergenic | 35.0% |
| ! | CGTATTTGGTTTCATGTTAC+AGG | + | chr5.3:52294042-52294061 | MS.gene049969:intron | 35.0% |
| ! | GATTCAAGTGAGATTTTGTC+TGG | + | chr5.3:52298220-52298239 | MS.gene049969:intron | 35.0% |
| ! | GCATAGGATGGTAGATTTTA+CGG | + | chr5.3:52295541-52295560 | MS.gene049969:intron | 35.0% |
| ! | TATGCCACTTCAAAATGAGA+AGG | - | chr5.3:52295526-52295545 | None:intergenic | 35.0% |
| ! | TTCTTTCTTTTCTCAAGGCA+AGG | + | chr5.3:52298726-52298745 | MS.gene049969:intron | 35.0% |
| !! | ATTCGATTTTTGAGGATGAG+TGG | - | chr5.3:52297474-52297493 | None:intergenic | 35.0% |
| !! | ATTGCCTTCTCATTTTGAAG+TGG | + | chr5.3:52295519-52295538 | MS.gene049969:intron | 35.0% |
| !! | GAACCTGGTCTTTTTAATTG+TGG | + | chr5.3:52295681-52295700 | MS.gene049969:intron | 35.0% |
| !! | GGCTATTGACTTAACAACAT+AGG | - | chr5.3:52298701-52298720 | None:intergenic | 35.0% |
| !! | GTTAAATGCTTGTTATGTCC+AGG | - | chr5.3:52298668-52298687 | None:intergenic | 35.0% |
| !! | TTGATAATGGTCCTCAACAT+AGG | + | chr5.3:52294395-52294414 | MS.gene049969:intron | 35.0% |
| !!! | GGTCTATTTTTGCACTGTTT+GGG | + | chr5.3:52297353-52297372 | MS.gene049969:intron | 35.0% |
| !!! | TGGTCTATTTTTGCACTGTT+TGG | + | chr5.3:52297352-52297371 | MS.gene049969:intron | 35.0% |
| !!! | TTCTCATTTTGAAGTGGCAT+AGG | + | chr5.3:52295525-52295544 | MS.gene049969:intron | 35.0% |
| !!! | TTGGCATTTTTTGAGTAACG+GGG | - | chr5.3:52294501-52294520 | None:intergenic | 35.0% |
| !!! | TTTTTTTGCTTGCGATGACT+AGG | + | chr5.3:52297926-52297945 | MS.gene049969:intron | 35.0% |
| AACCAAGGACACCAATCAAA+AGG | - | chr5.3:52295788-52295807 | None:intergenic | 40.0% | |
| AAGCCTCATTACTTAGGTTC+CGG | + | chr5.3:52295021-52295040 | MS.gene049969:CDS | 40.0% | |
| ACAACATTCCCCATGTATCT+TGG | + | chr5.3:52296143-52296162 | MS.gene049969:intron | 40.0% | |
| ACCAAGACCATTGTCAAAAG+GGG | - | chr5.3:52297604-52297623 | None:intergenic | 40.0% | |
| ACCAAGGACACCAATCAAAA+GGG | - | chr5.3:52295787-52295806 | None:intergenic | 40.0% | |
| AGACCAAGACCATTGTCAAA+AGG | - | chr5.3:52297606-52297625 | None:intergenic | 40.0% | |
| ATAATGCCTTGTGACATGCT+TGG | + | chr5.3:52296221-52296240 | MS.gene049969:intron | 40.0% | |
| ATATCAGGATGTATCCGTGT+CGG | - | chr5.3:52294535-52294554 | None:intergenic | 40.0% | |
| ATCGAGAAGCCTCATTACTT+AGG | + | chr5.3:52295015-52295034 | MS.gene049969:CDS | 40.0% | |
| ATCTACTGTATCTGTTGAGC+AGG | + | chr5.3:52297673-52297692 | MS.gene049969:CDS | 40.0% | |
| ATCTTTCTTTCCTCTTCTGC+CGG | - | chr5.3:52295043-52295062 | None:intergenic | 40.0% | |
| ATGGTCCTCAACATAGGAAT+TGG | + | chr5.3:52294401-52294420 | MS.gene049969:intron | 40.0% | |
| ATTCCTGATGTCTCTTGGAA+AGG | - | chr5.3:52297652-52297671 | None:intergenic | 40.0% | |
| ATTGAGAATCGAACCTTAGC+AGG | - | chr5.3:52293840-52293859 | None:intergenic | 40.0% | |
| ATTGGTACTGTGGTGTTCAA+AGG | - | chr5.3:52293600-52293619 | None:intergenic | 40.0% | |
| ATTGTATGTAAGAGGAAGCC+TGG | - | chr5.3:52295380-52295399 | None:intergenic | 40.0% | |
| CAAATTCAGTACGAAACGCA+CGG | + | chr5.3:52293678-52293697 | MS.gene049969:CDS | 40.0% | |
| CAACAATACCTGTAGGTTAG+GGG | + | chr5.3:52294329-52294348 | MS.gene049969:intron | 40.0% | |
| CAACTGCATTTGTGTGCAAT+TGG | + | chr5.3:52298528-52298547 | MS.gene049969:intron | 40.0% | |
| CCTCCACAATTAAAAAGACC+AGG | - | chr5.3:52295687-52295706 | None:intergenic | 40.0% | |
| CTTAGGTCAACAATACCTGT+AGG | + | chr5.3:52294322-52294341 | MS.gene049969:intron | 40.0% | |
| CTTTATATCCCCTAACCTAC+AGG | - | chr5.3:52294340-52294359 | None:intergenic | 40.0% | |
| GACCAAGACCATTGTCAAAA+GGG | - | chr5.3:52297605-52297624 | None:intergenic | 40.0% | |
| GACCAGGTTCTCAATAGTAT+AGG | - | chr5.3:52295671-52295690 | None:intergenic | 40.0% | |
| GACTTAACAACATAGGTTGC+AGG | - | chr5.3:52298694-52298713 | None:intergenic | 40.0% | |
| GATAAGGATAGGATACGACA+CGG | - | chr5.3:52294869-52294888 | None:intergenic | 40.0% | |
| GATACATCCTGATATGTACC+TGG | + | chr5.3:52294540-52294559 | MS.gene049969:intron | 40.0% | |
| GGAATTGGTAAATTATGCGC+GGG | + | chr5.3:52294416-52294435 | MS.gene049969:intron | 40.0% | |
| GGGAAGTAAATACTAGTGAG+TGG | + | chr5.3:52294252-52294271 | MS.gene049969:intron | 40.0% | |
| GTCAACAATACCTGTAGGTT+AGG | + | chr5.3:52294327-52294346 | MS.gene049969:intron | 40.0% | |
| GTTCTTTGACTAGAGGAAGA+AGG | - | chr5.3:52296125-52296144 | None:intergenic | 40.0% | |
| GTTGTAGATGGTTGCTCAAT+AGG | - | chr5.3:52298011-52298030 | None:intergenic | 40.0% | |
| TAGGGGATATAAAGATGGCT+TGG | + | chr5.3:52294346-52294365 | MS.gene049969:intron | 40.0% | |
| TATACTGGCACTTGTCTGTT+TGG | + | chr5.3:52298044-52298063 | MS.gene049969:intron | 40.0% | |
| TATGAGATCTGTTAGCAAGC+TGG | + | chr5.3:52295310-52295329 | MS.gene049969:intron | 40.0% | |
| TGAATGACACTCTGTGTGAA+TGG | + | chr5.3:52294444-52294463 | MS.gene049969:intron | 40.0% | |
| TGGTAAACTGGTGATTCTCT+TGG | + | chr5.3:52298333-52298352 | MS.gene049969:intron | 40.0% | |
| TGGTATATAATGTCTGGCAC+TGG | + | chr5.3:52297332-52297351 | MS.gene049969:intron | 40.0% | |
| TTCCAATGCAATGAAGGAAC+CGG | - | chr5.3:52297010-52297029 | None:intergenic | 40.0% | |
| ! | AGGATGGTAGATTTTACGGT+GGG | + | chr5.3:52295545-52295564 | MS.gene049969:intron | 40.0% |
| ! | ATCGTGTTTTCTTTGCATCC+AGG | + | chr5.3:52295359-52295378 | MS.gene049969:intron | 40.0% |
| ! | ATGGTCTTGGTCTATTCTAC+AGG | + | chr5.3:52297613-52297632 | MS.gene049969:intron | 40.0% |
| ! | ATTTTATGGTGCTCCGGATA+CGG | + | chr5.3:52294628-52294647 | MS.gene049969:intron | 40.0% |
| ! | CAAGTTTTCTCTTCAGTGGA+AGG | + | chr5.3:52296705-52296724 | MS.gene049969:intron | 40.0% |
| ! | CATACCAGAACTCTTTTGAC+AGG | - | chr5.3:52295949-52295968 | None:intergenic | 40.0% |
| ! | GCATCAAGTTTTCTCTTCAG+TGG | + | chr5.3:52296701-52296720 | MS.gene049969:intron | 40.0% |
| ! | TAGGATGGTAGATTTTACGG+TGG | + | chr5.3:52295544-52295563 | MS.gene049969:intron | 40.0% |
| ! | TGGTCTTGGTCTATTCTACA+GGG | + | chr5.3:52297614-52297633 | MS.gene049969:intron | 40.0% |
| !! | AATTCTTTGGGTTTTGGTGC+AGG | + | chr5.3:52294956-52294975 | MS.gene049969:intron | 40.0% |
| !! | CAAAGTATTGGTTTCCGACA+CGG | + | chr5.3:52294518-52294537 | MS.gene049969:intron | 40.0% |
| !! | CAATCGGTGTTGTTACTGTT+GGG | + | chr5.3:52294067-52294086 | MS.gene049969:CDS | 40.0% |
| !! | CCTGGTCTTTTTAATTGTGG+AGG | + | chr5.3:52295684-52295703 | MS.gene049969:intron | 40.0% |
| !! | GTGATTAATTTGCCGATCTG+TGG | + | chr5.3:52294284-52294303 | MS.gene049969:intron | 40.0% |
| !! | TCAATCGGTGTTGTTACTGT+TGG | + | chr5.3:52294066-52294085 | MS.gene049969:CDS | 40.0% |
| !!! | CATTTTGAAGTGGCATAGGA+TGG | + | chr5.3:52295529-52295548 | MS.gene049969:intron | 40.0% |
| ACCAACCTCGTGCTAATTTG+AGG | - | chr5.3:52298503-52298522 | None:intergenic | 45.0% | |
| ACCACCCTCAAACTTTGTTG+AGG | - | chr5.3:52294130-52294149 | None:intergenic | 45.0% | |
| AGACCTTTCCAAGAGACATC+AGG | + | chr5.3:52297646-52297665 | MS.gene049969:CDS | 45.0% | |
| AGCCCCAGTAGGATAGTTAT+CGG | - | chr5.3:52295117-52295136 | None:intergenic | 45.0% | |
| AGGTCCGATAACTATCCTAC+TGG | + | chr5.3:52295110-52295129 | MS.gene049969:intron | 45.0% | |
| ATAGGAGTGATGTTGTGTGC+AGG | - | chr5.3:52297993-52298012 | None:intergenic | 45.0% | |
| ATGTAGGATGCAGCGAAAGA+AGG | + | chr5.3:52296482-52296501 | MS.gene049969:intron | 45.0% | |
| CAAAATCGACCCCAATGATG+CGG | + | chr5.3:52296800-52296819 | MS.gene049969:CDS | 45.0% | |
| CAACCTCGTGCTAATTTGAG+GGG | - | chr5.3:52298501-52298520 | None:intergenic | 45.0% | |
| CAAGATGGGTCCAATAGTTG+TGG | + | chr5.3:52296528-52296547 | MS.gene049969:CDS | 45.0% | |
| CAAGCTCACGAGATTTCTGA+TGG | - | chr5.3:52296585-52296604 | None:intergenic | 45.0% | |
| CAAGGTAACAACTCAGACTG+TGG | + | chr5.3:52297954-52297973 | MS.gene049969:intron | 45.0% | |
| CAATAGTTGTGGTACAGACC+AGG | + | chr5.3:52296539-52296558 | MS.gene049969:CDS | 45.0% | |
| CAGCACATATGGTCTGTCTT+GGG | - | chr5.3:52295473-52295492 | None:intergenic | 45.0% | |
| CATACACCAAGCATGTCACA+AGG | - | chr5.3:52296230-52296249 | None:intergenic | 45.0% | |
| CCAACCTCGTGCTAATTTGA+GGG | - | chr5.3:52298502-52298521 | None:intergenic | 45.0% | |
| CCAAGACCATTGTCAAAAGG+GGG | - | chr5.3:52297603-52297622 | None:intergenic | 45.0% | |
| CGTGTCGGAAACCAATACTT+TGG | - | chr5.3:52294520-52294539 | None:intergenic | 45.0% | |
| CTGGTCTGTACCACAACTAT+TGG | - | chr5.3:52296541-52296560 | None:intergenic | 45.0% | |
| CTGTGATAGACCAGCACATA+TGG | - | chr5.3:52295484-52295503 | None:intergenic | 45.0% | |
| CTTAAAATGCAAGCCCCAGT+AGG | - | chr5.3:52295128-52295147 | None:intergenic | 45.0% | |
| GATAGGATACGACACGGATA+CGG | - | chr5.3:52294863-52294882 | None:intergenic | 45.0% | |
| GCATTTAGCAAGCCACAGAT+CGG | - | chr5.3:52294299-52294318 | None:intergenic | 45.0% | |
| GGTCCGATAACTATCCTACT+GGG | + | chr5.3:52295111-52295130 | MS.gene049969:intron | 45.0% | |
| GGTGCCTCAACAAAGTTTGA+GGG | + | chr5.3:52294123-52294142 | MS.gene049969:CDS | 45.0% | |
| GTCCGATAACTATCCTACTG+GGG | + | chr5.3:52295112-52295131 | MS.gene049969:intron | 45.0% | |
| GTTGCCTGTCAAAAGAGTTC+TGG | + | chr5.3:52295942-52295961 | MS.gene049969:intron | 45.0% | |
| GTTGGCATTTAGGCTTGACT+TGG | + | chr5.3:52295437-52295456 | MS.gene049969:intron | 45.0% | |
| TAAGTTAGAGCCTGGTGCTT+TGG | - | chr5.3:52298606-52298625 | None:intergenic | 45.0% | |
| TACGTCAAGAAGTTGCACTC+AGG | + | chr5.3:52295090-52295109 | MS.gene049969:CDS | 45.0% | |
| TAGGAGTGATGTTGTGTGCA+GGG | - | chr5.3:52297992-52298011 | None:intergenic | 45.0% | |
| TCCAATGCAATGAAGGAACC+GGG | - | chr5.3:52297009-52297028 | None:intergenic | 45.0% | |
| TGTAGGATGCAGCGAAAGAA+GGG | + | chr5.3:52296483-52296502 | MS.gene049969:intron | 45.0% | |
| TTGGATGCACAGCTGTCTAT+TGG | + | chr5.3:52298063-52298082 | MS.gene049969:intron | 45.0% | |
| TTGTGATCAGACAACTTCCC+TGG | + | chr5.3:52298647-52298666 | MS.gene049969:intron | 45.0% | |
| ! | AAAGCACCAGGCTCTAACTT+AGG | + | chr5.3:52298605-52298624 | MS.gene049969:intron | 45.0% |
| ! | ACAGTTCCCCCTTTTGACAA+TGG | + | chr5.3:52297594-52297613 | MS.gene049969:intron | 45.0% |
| ! | AGGTCACTTTGCAATGCTTG+TGG | + | chr5.3:52296841-52296860 | MS.gene049969:CDS | 45.0% |
| ! | ATGGTAGATTTTACGGTGGG+AGG | + | chr5.3:52295548-52295567 | MS.gene049969:intron | 45.0% |
| ! | CAAGCATTGCAAAGTGACCT+TGG | - | chr5.3:52296841-52296860 | None:intergenic | 45.0% |
| ! | CAATGCTTGTGGGCTTTTCT+GGG | + | chr5.3:52296852-52296871 | MS.gene049969:CDS | 45.0% |
| ! | CTTTTCTGGGCAAATAGGGT+AGG | + | chr5.3:52296865-52296884 | MS.gene049969:intron | 45.0% |
| ! | GGTCACTTTGCAATGCTTGT+GGG | + | chr5.3:52296842-52296861 | MS.gene049969:CDS | 45.0% |
| ! | TCACGAGATTTCTGATGGAC+TGG | - | chr5.3:52296580-52296599 | None:intergenic | 45.0% |
| ! | TCCAACTCCGATGCTGTTTA+CGG | + | chr5.3:52293711-52293730 | MS.gene049969:CDS | 45.0% |
| ! | TCTGTTAGCAAGCTGGTCTA+CGG | + | chr5.3:52295317-52295336 | MS.gene049969:intron | 45.0% |
| ! | TGGGCTTTTCTGGGCAAATA+GGG | + | chr5.3:52296861-52296880 | MS.gene049969:CDS | 45.0% |
| ! | TGGTAGATTTTACGGTGGGA+GGG | + | chr5.3:52295549-52295568 | MS.gene049969:intron | 45.0% |
| !! | GGCTTGCTAAATGCTAGCTT+AGG | + | chr5.3:52294305-52294324 | MS.gene049969:intron | 45.0% |
| !! | GGTTGAGAGTGTTCGTACAT+TGG | - | chr5.3:52293579-52293598 | None:intergenic | 45.0% |
| !! | GGTTTTGGTGCAGGAATCAA+TGG | + | chr5.3:52294965-52294984 | MS.gene049969:intron | 45.0% |
| !! | TGAGAGTGTTCGTACATTGG+TGG | - | chr5.3:52293576-52293595 | None:intergenic | 45.0% |
| !! | TGCGATGACTAGGTTGATCA+AGG | + | chr5.3:52297936-52297955 | MS.gene049969:intron | 45.0% |
| !!! | GGAAATAGGTTGTTTTGGGC+TGG | + | chr5.3:52297753-52297772 | MS.gene049969:intron | 45.0% |
| !!! | TTTATTTTTTTTAAATAGAT+TGG | + | chr5.3:52294586-52294605 | MS.gene049969:intron | 5.0% |
| ACCTGATGCTGGTGTGAATG+CGG | + | chr5.3:52294102-52294121 | MS.gene049969:CDS | 50.0% | |
| ACGACACGGATACGGTGATA+TGG | - | chr5.3:52294855-52294874 | None:intergenic | 50.0% | |
| AGGGAACCTAAGTTAGAGCC+TGG | - | chr5.3:52298614-52298633 | None:intergenic | 50.0% | |
| AGGGTAGGTGTTCTCTCCAA+AGG | + | chr5.3:52296880-52296899 | MS.gene049969:intron | 50.0% | |
| ATGCAATGAAGGAACCGGGA+AGG | - | chr5.3:52297005-52297024 | None:intergenic | 50.0% | |
| CAAAGTGACCTTGGACCAGA+TGG | - | chr5.3:52296832-52296851 | None:intergenic | 50.0% | |
| CCAAGACAGACCATATGTGC+TGG | + | chr5.3:52295471-52295490 | MS.gene049969:intron | 50.0% | |
| CCAGCACATATGGTCTGTCT+TGG | - | chr5.3:52295474-52295493 | None:intergenic | 50.0% | |
| CCCTCAAATTAGCACGAGGT+TGG | + | chr5.3:52298499-52298518 | MS.gene049969:intron | 50.0% | |
| CGGTGCCTCAACAAAGTTTG+AGG | + | chr5.3:52294122-52294141 | MS.gene049969:CDS | 50.0% | |
| CTGCCGGAACCTAAGTAATG+AGG | - | chr5.3:52295027-52295046 | None:intergenic | 50.0% | |
| GCCTCAACAAAGTTTGAGGG+TGG | + | chr5.3:52294126-52294145 | MS.gene049969:CDS | 50.0% | |
| GGATGTGAACAACCTGATGC+TGG | + | chr5.3:52294091-52294110 | MS.gene049969:CDS | 50.0% | |
| TACAGACCAGGATTCTAGCC+AGG | + | chr5.3:52296551-52296570 | MS.gene049969:CDS | 50.0% | |
| TACTTAGGTTCCGGCAGAAG+AGG | + | chr5.3:52295030-52295049 | MS.gene049969:CDS | 50.0% | |
| TCAGTACGAAACGCACGGTA+TGG | + | chr5.3:52293683-52293702 | MS.gene049969:CDS | 50.0% | |
| TCCCGGTTCCTTCATTGCAT+TGG | + | chr5.3:52297005-52297024 | MS.gene049969:intron | 50.0% | |
| TGACTCTGTTACGCCTGCTA+AGG | + | chr5.3:52293824-52293843 | MS.gene049969:CDS | 50.0% | |
| TGCAATGAAGGAACCGGGAA+GGG | - | chr5.3:52297004-52297023 | None:intergenic | 50.0% | |
| ! | CCCCCTTTTGACAATGGTCT+TGG | + | chr5.3:52297600-52297619 | MS.gene049969:intron | 50.0% |
| ! | CTGTTAGCAAGCTGGTCTAC+GGG | + | chr5.3:52295318-52295337 | MS.gene049969:intron | 50.0% |
| ! | GCAATGCTTGTGGGCTTTTC+TGG | + | chr5.3:52296851-52296870 | MS.gene049969:CDS | 50.0% |
| ! | GTGGGCTTTTCTGGGCAAAT+AGG | + | chr5.3:52296860-52296879 | MS.gene049969:CDS | 50.0% |
| ! | TCCGATGCTGTTTACGGCAA+CGG | + | chr5.3:52293717-52293736 | MS.gene049969:CDS | 50.0% |
| !! | GCCCTTTTGATTGGTGTCCT+TGG | + | chr5.3:52295783-52295802 | MS.gene049969:intron | 50.0% |
| !! | TCGGTGTTGTTACTGTTGGG+TGG | + | chr5.3:52294070-52294089 | MS.gene049969:CDS | 50.0% |
| !! | TTGATGTTGAGCGTCGATGC+CGG | - | chr5.3:52293661-52293680 | None:intergenic | 50.0% |
| !! | TTTCTGATGGACTGGCATCC+TGG | - | chr5.3:52296572-52296591 | None:intergenic | 50.0% |
| ACACTCATGCATGCCCTTCC+CGG | + | chr5.3:52296988-52297007 | MS.gene049969:intron | 55.0% | |
| ACCACAGTACCAATCACCGC+CGG | + | chr5.3:52293606-52293625 | MS.gene049969:CDS | 55.0% | |
| ACCGCATTCACACCAGCATC+AGG | - | chr5.3:52294106-52294125 | None:intergenic | 55.0% | |
| CCTCGTGCTAATTTGAGGGG+CGG | - | chr5.3:52298498-52298517 | None:intergenic | 55.0% | |
| CCTGCTGACAAGTCCTCGTA+GGG | + | chr5.3:52295972-52295991 | MS.gene049969:intron | 55.0% | |
| CTATCATGGGCAGCCGTATC+CGG | - | chr5.3:52294644-52294663 | None:intergenic | 55.0% | |
| GCCGTTGCCGTAAACAGCAT+CGG | - | chr5.3:52293721-52293740 | None:intergenic | 55.0% | |
| GGAGTGAGAGAGTTCAGGAG+TGG | + | chr5.3:52294367-52294386 | MS.gene049969:intron | 55.0% | |
| GGCTTGGAGTGAGAGAGTTC+AGG | + | chr5.3:52294362-52294381 | MS.gene049969:intron | 55.0% | |
| TCCTGCTGACAAGTCCTCGT+AGG | + | chr5.3:52295971-52295990 | MS.gene049969:intron | 55.0% | |
| TGGCATCCTGGCTAGAATCC+TGG | - | chr5.3:52296560-52296579 | None:intergenic | 55.0% | |
| ! | CAGCTTACGCTGTCGTTTCG+TGG | + | chr5.3:52293786-52293805 | MS.gene049969:CDS | 55.0% |
| ! | GATGCTGTTTACGGCAACGG+CGG | + | chr5.3:52293720-52293739 | MS.gene049969:CDS | 55.0% |
| ! | GCAGCTGAAACCAAAGCACC+AGG | + | chr5.3:52298593-52298612 | MS.gene049969:intron | 55.0% |
| ! | GCCGTAAACAGCATCGGAGT+TGG | - | chr5.3:52293715-52293734 | None:intergenic | 55.0% |
| ! | TTTTAGTCCGGTGCCCTACG+AGG | - | chr5.3:52295988-52296007 | None:intergenic | 55.0% |
| ATGGCCCTCGCCGCATCATT+GGG | - | chr5.3:52296813-52296832 | None:intergenic | 60.0% | |
| CCCTACGAGGACTTGTCAGC+AGG | - | chr5.3:52295975-52295994 | None:intergenic | 60.0% | |
| CCGCCCCTCAAATTAGCACG+AGG | + | chr5.3:52298495-52298514 | MS.gene049969:intron | 60.0% | |
| GACAAGTCCTCGTAGGGCAC+CGG | + | chr5.3:52295978-52295997 | MS.gene049969:intron | 60.0% | |
| ATGATGCGGCGAGGGCCATC+TGG | + | chr5.3:52296814-52296833 | MS.gene049969:CDS | 65.0% | |
| CGACCCCAATGATGCGGCGA+GGG | + | chr5.3:52296806-52296825 | MS.gene049969:CDS | 65.0% | |
| GATGGCCCTCGCCGCATCAT+TGG | - | chr5.3:52296814-52296833 | None:intergenic | 65.0% | |
| GCCGGCGGTGATTGGTACTG+TGG | - | chr5.3:52293610-52293629 | None:intergenic | 65.0% | |
| GGCGAAAGCGACGACGGTTC+CGG | + | chr5.3:52293627-52293646 | MS.gene049969:CDS | 65.0% | |
| TCGACCCCAATGATGCGGCG+AGG | + | chr5.3:52296805-52296824 | MS.gene049969:CDS | 65.0% | |
| TCGCTTTCGCCGGCGGTGAT+TGG | - | chr5.3:52293618-52293637 | None:intergenic | 65.0% | |
| TGGCCCTCGCCGCATCATTG+GGG | - | chr5.3:52296812-52296831 | None:intergenic | 65.0% | |
| ! | GGAACCGTCGTCGCTTTCGC+CGG | - | chr5.3:52293628-52293647 | None:intergenic | 65.0% |
| !! | TTGAGCGTCGATGCCGGCGT+CGG | - | chr5.3:52293655-52293674 | None:intergenic | 65.0% |
| ACCGCCGGCGAAAGCGACGA+CGG | + | chr5.3:52293621-52293640 | MS.gene049969:CDS | 70.0% | |
| GGCGAGGGCCATCTGGTCCA+AGG | + | chr5.3:52296821-52296840 | MS.gene049969:CDS | 70.0% | |
| ! | ACCGTCGTCGCTTTCGCCGG+CGG | - | chr5.3:52293625-52293644 | None:intergenic | 70.0% |
| !! | TGAGCGTCGATGCCGGCGTC+GGG | - | chr5.3:52293654-52293673 | None:intergenic | 70.0% |
| GACGGTTCCGGTCCCGACGC+CGG | + | chr5.3:52293639-52293658 | MS.gene049969:CDS | 75.0% | |
| ! | GTCGATGCCGGCGTCGGGAC+CGG | - | chr5.3:52293649-52293668 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 52293567 | 52298854 | 52293567 | ID=MS.gene049969 |
| chr5.3 | mRNA | 52293567 | 52298854 | 52293567 | ID=MS.gene049969.t1;Parent=MS.gene049969 |
| chr5.3 | exon | 52293567 | 52293845 | 52293567 | ID=MS.gene049969.t1.exon1;Parent=MS.gene049969.t1 |
| chr5.3 | CDS | 52293567 | 52293845 | 52293567 | ID=cds.MS.gene049969.t1;Parent=MS.gene049969.t1 |
| chr5.3 | exon | 52294064 | 52294147 | 52294064 | ID=MS.gene049969.t1.exon2;Parent=MS.gene049969.t1 |
| chr5.3 | CDS | 52294064 | 52294147 | 52294064 | ID=cds.MS.gene049969.t1;Parent=MS.gene049969.t1 |
| chr5.3 | exon | 52294978 | 52295111 | 52294978 | ID=MS.gene049969.t1.exon3;Parent=MS.gene049969.t1 |
| chr5.3 | CDS | 52294978 | 52295111 | 52294978 | ID=cds.MS.gene049969.t1;Parent=MS.gene049969.t1 |
| chr5.3 | exon | 52296488 | 52296595 | 52296488 | ID=MS.gene049969.t1.exon4;Parent=MS.gene049969.t1 |
| chr5.3 | CDS | 52296488 | 52296595 | 52296488 | ID=cds.MS.gene049969.t1;Parent=MS.gene049969.t1 |
| chr5.3 | exon | 52296777 | 52296882 | 52296777 | ID=MS.gene049969.t1.exon5;Parent=MS.gene049969.t1 |
| chr5.3 | CDS | 52296777 | 52296882 | 52296777 | ID=cds.MS.gene049969.t1;Parent=MS.gene049969.t1 |
| chr5.3 | exon | 52297635 | 52297694 | 52297635 | ID=MS.gene049969.t1.exon6;Parent=MS.gene049969.t1 |
| chr5.3 | CDS | 52297635 | 52297694 | 52297635 | ID=cds.MS.gene049969.t1;Parent=MS.gene049969.t1 |
| chr5.3 | exon | 52298813 | 52298854 | 52298813 | ID=MS.gene049969.t1.exon7;Parent=MS.gene049969.t1 |
| chr5.3 | CDS | 52298813 | 52298854 | 52298813 | ID=cds.MS.gene049969.t1;Parent=MS.gene049969.t1 |
| Gene Sequence |
| Protein sequence |
