AlfalfaGEDB | MS.gene21306

M. sativa cultivar XinJiangDaYe / MS.gene21306

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006355 GO:0008150 GO:0008270 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043167 GO:0043169 GO:0043565 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00320.30 PF06200.17 PF06203.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21306.t1	XP_003615317.1	98.1	257	5	0	1	257	1	257	2.70E-139	504.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21306.t1	Q9LRH6	62.8	180	65	1	72	249	81	260	2.5e-53	210.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21306.t1	G7JYF5	98.1	257	5	0	1	257	1	257	2.0e-139	504.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene21306.t1	TF	C2C2-GATA

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049969	MS.gene21306	0.808246	3.40E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21306.t1	MTR_5g066510	98.054	257	5	0	1	257	1	257	0.0	528
MS.gene21306.t1	MTR_5g066510	97.525	202	5	0	1	202	1	202	1.41e-147	410
MS.gene21306.t1	MTR_3g100050	67.453	212	64	4	46	253	42	252	1.61e-92	275
MS.gene21306.t1	MTR_3g100040	54.595	185	76	5	74	252	69	251	1.61e-57	187
MS.gene21306.t1	MTR_4g093730	51.208	207	80	8	53	245	20	219	1.07e-56	184
MS.gene21306.t1	MTR_3g100040	59.504	121	46	1	135	252	27	147	9.46e-46	154
MS.gene21306.t1	MTR_1g061610	67.647	68	21	1	39	106	42	108	4.15e-24	94.0
MS.gene21306.t1	MTR_4g008070	53.659	82	24	4	167	237	1	79	2.12e-18	78.2
MS.gene21306.t1	MTR_3g060200	37.113	97	57	2	159	252	4	99	1.29e-14	73.2
MS.gene21306.t1	MTR_3g060200	38.235	102	56	3	159	257	4	101	1.68e-14	72.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21306.t1	AT4G24470	62.778	180	65	1	72	249	81	260	4.00e-74	228
MS.gene21306.t1	AT4G24470	62.778	180	65	1	72	249	81	260	4.00e-74	228
MS.gene21306.t1	AT4G24470	62.778	180	65	1	72	249	81	260	4.82e-74	228
MS.gene21306.t1	AT1G51600	59.893	187	64	4	70	245	79	265	5.94e-69	215
MS.gene21306.t1	AT1G51600	59.893	187	64	4	70	245	79	265	5.94e-69	215
MS.gene21306.t1	AT3G21175	51.452	241	84	7	38	245	21	261	1.37e-68	214
MS.gene21306.t1	AT3G21175	51.667	240	83	7	38	245	21	259	1.50e-67	211
MS.gene21306.t1	AT3G21175	47.802	182	69	6	38	194	21	201	4.03e-38	133
MS.gene21306.t1	AT2G46670	50.909	55	27	0	129	183	126	180	3.55e-11	60.8
MS.gene21306.t1	AT2G46790	50.909	55	27	0	129	183	411	465	6.68e-11	62.4

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Find 0 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATCGAATTATCGTCTCT+TGG	-	37955:9575-9594	MS.gene21306:CDS	30.0%
AAAGAAAACACGATCATACT+GGG	+	37955:7446-7465	MS.gene21306:intergenic	30.0%
AAATCGAATTATCGTCTCTT+GGG	-	37955:9576-9595	MS.gene21306:CDS	30.0%
ACTACATCTAAGAAACAAGA+TGG	-	37955:8604-8623	MS.gene21306:intron	30.0%
AGGAGTGGATATATTGATAA+TGG	-	37955:6480-6499	MS.gene21306:intron	30.0%
ATACGTGCTTCATAGATAAT+AGG	-	37955:6991-7010	MS.gene21306:intron	30.0%
ATAGAATCATGTTGGCATTT+AGG	-	37955:7520-7539	MS.gene21306:intron	30.0%
ATCTAGTGGTATATAATGTC+TGG	-	37955:9417-9436	MS.gene21306:intron	30.0%
ATGTTCCACTTTCTCTTATT+TGG	-	37955:8499-8518	MS.gene21306:intron	30.0%
ATTTACCAATTCCTATGTTG+AGG	+	37955:6507-6526	MS.gene21306:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
37955	gene	5667	9787	5667	ID=MS.gene21306
37955	mRNA	5667	9787	5667	ID=MS.gene21306.t1;Parent=MS.gene21306
37955	exon	9509	9787	9509	ID=MS.gene21306.t1.exon1;Parent=MS.gene21306.t1
37955	CDS	9509	9787	9509	ID=cds.MS.gene21306.t1;Parent=MS.gene21306.t1
37955	exon	9209	9292	9209	ID=MS.gene21306.t1.exon2;Parent=MS.gene21306.t1
37955	CDS	9209	9292	9209	ID=cds.MS.gene21306.t1;Parent=MS.gene21306.t1
37955	exon	8250	8383	8250	ID=MS.gene21306.t1.exon3;Parent=MS.gene21306.t1
37955	CDS	8250	8383	8250	ID=cds.MS.gene21306.t1;Parent=MS.gene21306.t1
37955	exon	6768	6875	6768	ID=MS.gene21306.t1.exon4;Parent=MS.gene21306.t1
37955	CDS	6768	6875	6768	ID=cds.MS.gene21306.t1;Parent=MS.gene21306.t1
37955	exon	6481	6586	6481	ID=MS.gene21306.t1.exon5;Parent=MS.gene21306.t1
37955	CDS	6481	6586	6481	ID=cds.MS.gene21306.t1;Parent=MS.gene21306.t1
37955	exon	5667	5726	5667	ID=MS.gene21306.t1.exon6;Parent=MS.gene21306.t1
37955	CDS	5667	5726	5667	ID=cds.MS.gene21306.t1;Parent=MS.gene21306.t1

Gene Sequence

>MS.gene21306

ATGGAACCACCAATGTACGAACACTCTCAACCTTTGAACACCACAGTACCAATCACCGCCGGCGAAAGCGATGACGGTTCCGGTCCCGACGCCGGCATCGACGCTCAACATCAAATTCAGTACGAAACGCACGGTATGGATGATTCCAACTCCGATGCTGTTTACGGCAACGGCGGCGAAAATCCTGAATTTGCACTTCAAAGTTTTGATGAATCTGATCAGCTTACGCTGTCGTTTCGTGGTCAAGTTTATGTCTTTGACTCTGTTACGCCTGCTAAGGTTCGATTCTCAATTGTTGGAATTCTTTTTCTGTGATTTTATTTTGTTTATTATTGATTTTTCTTGGTGATTTTGTGACACTTTCGTTACTGAAATTGATTTAAGCTGAATAATGAATAATGAACGAAATAAATTTGATTTTTTTTTTGTTGTTGTTAAAAGTTGAATTTTTTAGTTATTTGGGATTGAAAATTCGTATTTGGTTTCATGTTACAGGTTCAATCGGTGTTGTTACTGTTGGGTGGATGTGAACAACCTGATGCTGGTGTGAATGCGGTGCCTCAACAAAGTTTGAGGGTGGTATGTTTTCTAATTGTTGAATAATAATGCTATTCACACAAACTTGCACACTTCACCAGCTTGTAACATGTTGAAAATTTGTAATTTGAATATGCATTAGATTTGGGAAGTAAATACTAGTGAGTGGAAGAAGATAGTGATTAATTTGCCGATCTGTGGCTTGCTAAATGCTAGCTTAGGTCAACAATACCTGTAGGTTAGGGGATATAAAGATGGCTTGGAGTGAGAGAGTTCAGGAGTGGATATATTGATAATGGTCCTCAACATAGGAATTGGTAAATTATGCGCGAGTGACGTGAATGACACTCTGTGTGAATGGCATCATTCATAAATCATAATAGGCTCTGAAGCCCCGTTACTCAAAAAATGCCAAAGTATCGGTTTCCGACACGGATACATCCTGATATGTACCTGGAAAGTATCAAACAATTAATATTTTTTATTTTTTTTAAATAGATTGGCCGATACGTATCAGATATAATTTTATGGTGCTCCGGATACGGCTGCCCATGATAGTAGTAGTACTTATGATTTCCTTTTTGGACGGTACTTAAGATATGTAATTGTTACTTGTTTTAATGCGAATGTTTCTTTATTATCATTATCATTTTTAGTTATGTTTATATATTGTGCATTTATATACTTAATTTAAATTTAATTTTTTATTAAAGTATTTTGGCTGTATCGTGTCTATTTAAAATTTTCCATATCGCCGTATCCGTGTCGTATCCTTATCATGTCAAGTATACGTGCTTCATAGATAATAGGATTTGATTAATGTTCAAGTGCAAATGGAAATTATTAATTCTTTGGGTTTTGGTGCAGGAATCAATGGATTTTCCTACAAAATATAGTCAACTACATCGAGAAGCCTCATTACTTAGGTTCCGGCAGAAGAGGAAAGAAAGATGCTTTGATAAGAAAGTTAGATATGAAGTACGTCAAGAAGTTGCACTCAGGTCCGATAACTATCCTACTGGGGCTTGCATTTTAAGCTTAACATTTTTGTTGCATTATATGTCAGATTCATCATGCGAATGATGATTGGGAATAAGTTTTCGATTTTGCTTCTATAAAGCAATTTGTTGATAAGTTGTAGATATGATATAATTGTAGAGTGTTATATAACAAGAGAATAATATAACTGAATGGTTTGCTATGAGATCTGTTAGCAAGCTGGTCTACGGGCTTAATTATCCCAGTATGATCGTGTTTTCTTTGCATCCAGGCTTCCTCTTACATACAATTATTTTCAGATTTAAAATGTATATTACATAGAATCATGTTGGCATTTAGGCTTGACTTGGTAAAGTCAAGCCCAAGACAGACCATATGTGCTGGTCTATCACAGAAATTTGTGCTTTAAATTGCCTTCTCATTTTGAAGTGGCATAGGATGGTAGATTTTACGGTGGGAGGGTCTGACAATTTAATTTTGGTCCTGTTACCAAATTGACTATACAACAACAGATATTTATGGGCAATTTCAACTTCGTTGATTTGGAGCATTCTCAAACCTATACTATTGAGAACCTGGTCTTTTTAATTGTGGAGGAATTGGAACTGACAAACTTTTAATCTCAAAAAATGTCAAACTGCCTCTGTTAAATTTGTTGATAAAGATTCATTTATGCCCTTTTGATTGGTGTCCTTGGTTTTGTGTGTTATTTTCAGTGTGATTGTTATTTTTTGCAATTCTCTTCATTTAATTTCCTTCAAATGATTTTGATTCTCAAATTTTAGAAATATCACTAGTTGACCGAGAATTTGAGGATAACTTAGGTTCATGATGTTGCCTGTCAAAAGAGTTCTGGTATGAGTCCTGCTGATAAGTCCTCGTAGGGCACGGACTAAAAAATCAAGAAATATAAAGTATTTGTTTCAGTTTGCTCCTATTGTTTAGTTTAGAAACAAATATTGATCTCTGACCATAGTAGACAAGAAACTAACAGTTGTGCTGTCATTTTGTTCCTTCTTCCTCTAGTCAAAGAACAACATTCCCCATGTATCTTGGATGCATGATACCTCAATAATTTATATCTCATAGAGTGAAAGGTGGAAAGATTGATAATGCCTTGTGACATGCTTGGTGTATGCTATATGTAATTGGTATGCATATTTGTACTTGTATGTATTATATTAATAATGACTTGAAGTCAACAGATGTTAGTTATGCCTCTCATCAATACATTTGTATAGGACTTAATCTTGTATTTTTTAATGGACTAAAAACTGACGGTTTGTCATGTCATCTATGTTCCACTTTCTCTTATTTGGCTCTTAAATTCTCTTCGTTGTTGCCAATTTCACTCTTTATTTTATGTTTAAATGTAGGATGCAGCGAAAGAAGGGTCAATTTACTACATCTAAGAAACAAGATGGGTCCAATAGTTGTGGTACAGACCAGGATTCTAGCCAGGATGCCAGTCCATCAGAAATCTCGTGAGCTTGTTTTTACTGTTGTTATGGCCAAAATATATTTTTTGTTCTGAGACTTGTAGTTGTAGCAATTCATTTTTCTAGAAAAGTCCAATATGAAATAACAATGCATCAAGTTTTCTCTTCAGTGGAAGGTTTATAACTAGAGTTTAACCACTATTCTTTAAATTGCTTGTTTAAATAGTTGCACACATTGTGGCACAAGCTCAAAATCGACCCCAATGATGCGGCGAGGGCCATCTGGTCCAAGGTCACTTTGCAATGCTTGTGGGCTTTTCTGGGCAAATAGGGTAGGTGTTCTCTCCAAAGGCTTTTTTTTTTTTTTTTTTTTGAAAATTTGTCTGTGGGTTTGTGTTTTGTTCTCTTTAATGTGTTCATTCATACGACTAACACATACACTCATGCATGCCCTTCCCGGTTCCTTCATTGCATTGGAATTTGCAAATATATACTGTTATATCACTTGTATGACTGTTTTGCTGAGAAGTAGTTTGTCGATCAGTGCAGTGAATATTCAGTTCTTTTAATCTTCTTCAGCTTGAATTTTCATAACCGTGTTTGTTTTGCTTTATCTTTTTAGTTTTTCTTGTTTGAAAATATTTATGAGCTCTGTCTATTTGGCTATTTTAGATATTTTGAAATGTCTTGTGGCTACATGCTACAATAATGATATTGAATGTGCATAAAAATGCAATGCATATGACCATAAATTTGTTTCACAACAAAATGAAGAATCTAGTGGTATATAATGTCTGGCACTGGTCTATTTTTGCACTGTTTGGGAATATCAAAATTTTGGGTAGTCTTGTTGATATTGCTTTTTGAACTTTGTGGACTATTTTCTTTTAAAACTTGTCAGAGGGTAATTTAATTTTTTTCCACTCATCCTCAAAAATCGAATTATCGTCTCTTGGGGTGATGCAAGTATTTTCATTGTTGCATCAAGCCTAATTCGTTCAACTGTGAATCTGCAATTTCTTCTATGTTGACCAGTTTATTATTAACAGTTCCCCCTTTTGACAATGGTCTTGGTCTATTCTACAGGGTGTCTTGAGAGACCTTTCCAAGAGACATCAGGAATTATCTACTGTACCTGTTGAGCAG

Protein sequence

>MS.gene21306.t1

MEPPMYEHSQPLNTTVPITAGESDDGSGPDAGIDAQHQIQYETHGMDDSNSDAVYGNGGENPEFALQSFDESDQLTLSFRGQVYVFDSVTPAKVQSVLLLLGGCEQPDAGVNAVPQQSLRVESMDFPTKYSQLHREASLLRFRQKRKERCFDKKVRYEVRQEVALRMQRKKGQFTTSKKQDGSNSCGTDQDSSQDASPSEISCTHCGTSSKSTPMMRRGPSGPRSLCNACGLFWANRGVLRDLSKRHQELSTVPVEQ