Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21306.t1 | XP_003615317.1 | 98.1 | 257 | 5 | 0 | 1 | 257 | 1 | 257 | 2.70E-139 | 504.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21306.t1 | Q9LRH6 | 62.8 | 180 | 65 | 1 | 72 | 249 | 81 | 260 | 2.5e-53 | 210.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21306.t1 | G7JYF5 | 98.1 | 257 | 5 | 0 | 1 | 257 | 1 | 257 | 2.0e-139 | 504.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene21306.t1 | TF | C2C2-GATA |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049969 | MS.gene21306 | 0.808246 | 3.40E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21306.t1 | MTR_5g066510 | 98.054 | 257 | 5 | 0 | 1 | 257 | 1 | 257 | 0.0 | 528 |
| MS.gene21306.t1 | MTR_5g066510 | 97.525 | 202 | 5 | 0 | 1 | 202 | 1 | 202 | 1.41e-147 | 410 |
| MS.gene21306.t1 | MTR_3g100050 | 67.453 | 212 | 64 | 4 | 46 | 253 | 42 | 252 | 1.61e-92 | 275 |
| MS.gene21306.t1 | MTR_3g100040 | 54.595 | 185 | 76 | 5 | 74 | 252 | 69 | 251 | 1.61e-57 | 187 |
| MS.gene21306.t1 | MTR_4g093730 | 51.208 | 207 | 80 | 8 | 53 | 245 | 20 | 219 | 1.07e-56 | 184 |
| MS.gene21306.t1 | MTR_3g100040 | 59.504 | 121 | 46 | 1 | 135 | 252 | 27 | 147 | 9.46e-46 | 154 |
| MS.gene21306.t1 | MTR_1g061610 | 67.647 | 68 | 21 | 1 | 39 | 106 | 42 | 108 | 4.15e-24 | 94.0 |
| MS.gene21306.t1 | MTR_4g008070 | 53.659 | 82 | 24 | 4 | 167 | 237 | 1 | 79 | 2.12e-18 | 78.2 |
| MS.gene21306.t1 | MTR_3g060200 | 37.113 | 97 | 57 | 2 | 159 | 252 | 4 | 99 | 1.29e-14 | 73.2 |
| MS.gene21306.t1 | MTR_3g060200 | 38.235 | 102 | 56 | 3 | 159 | 257 | 4 | 101 | 1.68e-14 | 72.4 |
| MS.gene21306.t1 | MTR_3g060200 | 37.113 | 97 | 57 | 2 | 159 | 252 | 4 | 99 | 1.77e-14 | 73.2 |
| MS.gene21306.t1 | MTR_3g060200 | 37.113 | 97 | 57 | 2 | 159 | 252 | 4 | 99 | 1.91e-14 | 72.8 |
| MS.gene21306.t1 | MTR_4g008090 | 50.000 | 80 | 30 | 3 | 93 | 166 | 12 | 87 | 2.27e-12 | 62.8 |
| MS.gene21306.t1 | MTR_4g108880 | 52.459 | 61 | 27 | 1 | 135 | 195 | 505 | 563 | 2.95e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21306.t1 | AT4G24470 | 62.778 | 180 | 65 | 1 | 72 | 249 | 81 | 260 | 4.00e-74 | 228 |
| MS.gene21306.t1 | AT4G24470 | 62.778 | 180 | 65 | 1 | 72 | 249 | 81 | 260 | 4.00e-74 | 228 |
| MS.gene21306.t1 | AT4G24470 | 62.778 | 180 | 65 | 1 | 72 | 249 | 81 | 260 | 4.82e-74 | 228 |
| MS.gene21306.t1 | AT1G51600 | 59.893 | 187 | 64 | 4 | 70 | 245 | 79 | 265 | 5.94e-69 | 215 |
| MS.gene21306.t1 | AT1G51600 | 59.893 | 187 | 64 | 4 | 70 | 245 | 79 | 265 | 5.94e-69 | 215 |
| MS.gene21306.t1 | AT3G21175 | 51.452 | 241 | 84 | 7 | 38 | 245 | 21 | 261 | 1.37e-68 | 214 |
| MS.gene21306.t1 | AT3G21175 | 51.667 | 240 | 83 | 7 | 38 | 245 | 21 | 259 | 1.50e-67 | 211 |
| MS.gene21306.t1 | AT3G21175 | 47.802 | 182 | 69 | 6 | 38 | 194 | 21 | 201 | 4.03e-38 | 133 |
| MS.gene21306.t1 | AT2G46670 | 50.909 | 55 | 27 | 0 | 129 | 183 | 126 | 180 | 3.55e-11 | 60.8 |
| MS.gene21306.t1 | AT2G46790 | 50.909 | 55 | 27 | 0 | 129 | 183 | 411 | 465 | 6.68e-11 | 62.4 |
| MS.gene21306.t1 | AT2G46790 | 50.909 | 55 | 27 | 0 | 129 | 183 | 254 | 308 | 6.73e-11 | 62.0 |
| MS.gene21306.t1 | AT2G46790 | 50.909 | 55 | 27 | 0 | 129 | 183 | 254 | 308 | 6.73e-11 | 62.0 |
| MS.gene21306.t1 | AT2G46790 | 50.909 | 55 | 27 | 0 | 129 | 183 | 294 | 348 | 8.41e-11 | 61.6 |
Find 0 sgRNAs with CRISPR-Local
Find 267 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTATGTTTAAATGT+AGG | - | 37955:8557-8576 | MS.gene21306:intron | 10.0% |
| !! | AAAAAAAAAAAAAAAGCCTT+TGG | + | 37955:8990-9009 | MS.gene21306:intergenic | 15.0% |
| !! | AATGGAAATTATTAATTCTT+TGG | - | 37955:7036-7055 | MS.gene21306:intron | 15.0% |
| !! | ATGGAAATTATTAATTCTTT+GGG | - | 37955:7037-7056 | MS.gene21306:intron | 15.0% |
| !!! | AGTTGAATTTTTTAGTTATT+TGG | - | 37955:6106-6125 | MS.gene21306:intron | 15.0% |
| !!! | CTTAATCTTGTATTTTTTAA+TGG | - | 37955:8446-8465 | MS.gene21306:intron | 15.0% |
| !!! | GTTGAATTTTTTAGTTATTT+GGG | - | 37955:6107-6126 | MS.gene21306:intron | 15.0% |
| !!! | TCAGAACAAAAAATATATTT+TGG | + | 37955:8717-8736 | MS.gene21306:intergenic | 15.0% |
| !!! | TGTTTATTATTGATTTTTCT+TGG | - | 37955:5990-6009 | MS.gene21306:intron | 15.0% |
| !! | AAATTATATCTGATACGTAT+CGG | + | 37955:6710-6729 | MS.gene21306:intergenic | 20.0% |
| !! | AAGAGAATAATATAACTGAA+TGG | - | 37955:7375-7394 | MS.gene21306:intron | 20.0% |
| !! | ATACAACAACAGATATTTAT+GGG | - | 37955:7703-7722 | MS.gene21306:intron | 20.0% |
| !! | ATTTGAATATGCATTAGATT+TGG | - | 37955:6329-6348 | MS.gene21306:intron | 20.0% |
| !! | CATAAAATAAAGAGTGAAAT+TGG | + | 37955:8548-8567 | MS.gene21306:intergenic | 20.0% |
| !! | CATCATTCATAAATCATAAT+AGG | - | 37955:6565-6584 | MS.gene21306:CDS | 20.0% |
| !! | CTATGAGATATAAATTATTG+AGG | + | 37955:8272-8291 | MS.gene21306:intergenic | 20.0% |
| !! | TATACAACAACAGATATTTA+TGG | - | 37955:7702-7721 | MS.gene21306:intron | 20.0% |
| !! | TATATTACATAGAATCATGT+TGG | - | 37955:7512-7531 | MS.gene21306:intron | 20.0% |
| !! | TGAAAATAATTGTATGTAAG+AGG | + | 37955:7481-7500 | MS.gene21306:intergenic | 20.0% |
| !! | TTTATCAACAAATTTAACAG+AGG | + | 37955:7846-7865 | MS.gene21306:intergenic | 20.0% |
| !! | TTTGAATATGCATTAGATTT+GGG | - | 37955:6330-6349 | MS.gene21306:intron | 20.0% |
| !!! | ACGTATCAGATATAATTTTA+TGG | - | 37955:6712-6731 | MS.gene21306:intron | 20.0% |
| !!! | ATTATTAATTCTTTGGGTTT+TGG | - | 37955:7043-7062 | MS.gene21306:intron | 20.0% |
| !!! | TTGTTTCTAAACTAAACAAT+AGG | + | 37955:8139-8158 | MS.gene21306:intergenic | 20.0% |
| !!! | TTTGGGAATATCAAAATTTT+GGG | - | 37955:9461-9480 | MS.gene21306:intron | 20.0% |
| !!! | TTTGTTGTGAAACAAATTTA+TGG | + | 37955:9390-9409 | MS.gene21306:intergenic | 20.0% |
| !!! | TTTTTTGAAAATTTGTCTGT+GGG | - | 37955:9009-9028 | MS.gene21306:intron | 20.0% |
| !!! | TTTTTTTGAAAATTTGTCTG+TGG | - | 37955:9008-9027 | MS.gene21306:intron | 20.0% |
| ! | AAGATAAAGCAAAACAAACA+CGG | + | 37955:9239-9258 | MS.gene21306:intergenic | 25.0% |
| ! | ACAAGCAATTTAAAGAATAG+TGG | + | 37955:8840-8859 | MS.gene21306:intergenic | 25.0% |
| ! | ATAAGTACTACTACTATCAT+GGG | + | 37955:6755-6774 | MS.gene21306:intergenic | 25.0% |
| ! | TCTCATCAATACATTTGTAT+AGG | - | 37955:8422-8441 | MS.gene21306:intron | 25.0% |
| ! | TGAGAATCAAAATCATTTGA+AGG | + | 37955:7960-7979 | MS.gene21306:intergenic | 25.0% |
| ! | TTAATTGTTTGATACTTTCC+AGG | + | 37955:6659-6678 | MS.gene21306:intergenic | 25.0% |
| ! | TTTATATCTCATAGAGTGAA+AGG | - | 37955:8278-8297 | MS.gene21306:CDS | 25.0% |
| !! | AGTACTTATGATTTCCTTTT+TGG | - | 37955:6766-6785 | MS.gene21306:intron | 25.0% |
| !! | GTTTGGGAATATCAAAATTT+TGG | - | 37955:9460-9479 | MS.gene21306:intron | 25.0% |
| !! | TATACAAATGTATTGATGAG+AGG | + | 37955:8423-8442 | MS.gene21306:intergenic | 25.0% |
| !! | TGTAGTTGACTATATTTTGT+AGG | + | 37955:7089-7108 | MS.gene21306:intergenic | 25.0% |
| !!! | AGATATTTTGAAATGTCTTG+TGG | - | 37955:9312-9331 | MS.gene21306:intron | 25.0% |
| !!! | ATATTGCTTTTTGAACTTTG+TGG | - | 37955:9495-9514 | MS.gene21306:intron | 25.0% |
| !!! | GATGCATTGTTATTTCATAT+TGG | + | 37955:8777-8796 | MS.gene21306:intergenic | 25.0% |
| !!! | TTCTTTTAAAACTTGTCAGA+GGG | - | 37955:9524-9543 | MS.gene21306:CDS | 25.0% |
| !!! | TTTAATGGACTAAAAACTGA+CGG | - | 37955:8461-8480 | MS.gene21306:intron | 25.0% |
| !!! | TTTCTTTTAAAACTTGTCAG+AGG | - | 37955:9523-9542 | MS.gene21306:CDS | 25.0% |
| AAAATCGAATTATCGTCTCT+TGG | - | 37955:9575-9594 | MS.gene21306:CDS | 30.0% | |
| AAAGAAAACACGATCATACT+GGG | + | 37955:7446-7465 | MS.gene21306:intergenic | 30.0% | |
| AAATCGAATTATCGTCTCTT+GGG | - | 37955:9576-9595 | MS.gene21306:CDS | 30.0% | |
| ACTACATCTAAGAAACAAGA+TGG | - | 37955:8604-8623 | MS.gene21306:intron | 30.0% | |
| AGGAGTGGATATATTGATAA+TGG | - | 37955:6480-6499 | MS.gene21306:intron | 30.0% | |
| ATACGTGCTTCATAGATAAT+AGG | - | 37955:6991-7010 | MS.gene21306:intron | 30.0% | |
| ATAGAATCATGTTGGCATTT+AGG | - | 37955:7520-7539 | MS.gene21306:intron | 30.0% | |
| ATCTAGTGGTATATAATGTC+TGG | - | 37955:9417-9436 | MS.gene21306:intron | 30.0% | |
| ATGTTCCACTTTCTCTTATT+TGG | - | 37955:8499-8518 | MS.gene21306:intron | 30.0% | |
| ATTTACCAATTCCTATGTTG+AGG | + | 37955:6507-6526 | MS.gene21306:intergenic | 30.0% | |
| ATTTATGAGCTCTGTCTATT+TGG | - | 37955:9282-9301 | MS.gene21306:intron | 30.0% | |
| CAACAAAATGAAGAATCTAG+TGG | - | 37955:9403-9422 | MS.gene21306:intron | 30.0% | |
| CATAAGTACTACTACTATCA+TGG | + | 37955:6756-6775 | MS.gene21306:intergenic | 30.0% | |
| CTAAGTTATCCTCAAATTCT+CGG | + | 37955:8007-8026 | MS.gene21306:intergenic | 30.0% | |
| CTACATCTAAGAAACAAGAT+GGG | - | 37955:8605-8624 | MS.gene21306:intron | 30.0% | |
| CTCAAAAAATGCCAAAGTAT+CGG | - | 37955:6604-6623 | MS.gene21306:intron | 30.0% | |
| CTGTTGTTGTATAGTCAATT+TGG | + | 37955:7695-7714 | MS.gene21306:intergenic | 30.0% | |
| GAAAATAACACACAAAACCA+AGG | + | 37955:7897-7916 | MS.gene21306:intergenic | 30.0% | |
| GATTAATGTTCAAGTGCAAA+TGG | - | 37955:7018-7037 | MS.gene21306:intron | 30.0% | |
| GGGAACTGTTAATAATAAAC+TGG | + | 37955:9676-9695 | MS.gene21306:intergenic | 30.0% | |
| TGGGATTGAAAATTCGTATT+TGG | - | 37955:6126-6145 | MS.gene21306:intron | 30.0% | |
| TGGTGTATGCTATATGTAAT+TGG | - | 37955:8332-8351 | MS.gene21306:CDS | 30.0% | |
| TTAAATAGTTGCACACATTG+TGG | - | 37955:8860-8879 | MS.gene21306:intron | 30.0% | |
| TTTCATGTTACAGGTTCAAT+CGG | - | 37955:6149-6168 | MS.gene21306:intron | 30.0% | |
| ! | AGACGATAATTCGATTTTTG+AGG | + | 37955:9573-9592 | MS.gene21306:intergenic | 30.0% |
| ! | ATTTTCAACATGTTACAAGC+TGG | + | 37955:6304-6323 | MS.gene21306:intergenic | 30.0% |
| ! | CAATTTCAACTTCGTTGATT+TGG | - | 37955:7726-7745 | MS.gene21306:intron | 30.0% |
| ! | CTTATGATTTCCTTTTTGGA+CGG | - | 37955:6770-6789 | MS.gene21306:CDS | 30.0% |
| ! | GATATAATTTTATGGTGCTC+CGG | - | 37955:6720-6739 | MS.gene21306:intron | 30.0% |
| ! | TGTATAGTCAATTTGGTAAC+AGG | + | 37955:7688-7707 | MS.gene21306:intergenic | 30.0% |
| ! | TGTTAGTTTCTTGTCTACTA+TGG | + | 37955:8176-8195 | MS.gene21306:intergenic | 30.0% |
| ! | TTCATTTATGCCCTTTTGAT+TGG | - | 37955:7868-7887 | MS.gene21306:intron | 30.0% |
| !! | AAACTTTGAAGTGCAAATTC+AGG | + | 37955:5853-5872 | MS.gene21306:intergenic | 30.0% |
| !! | AGGGTCTGACAATTTAATTT+TGG | - | 37955:7661-7680 | MS.gene21306:intron | 30.0% |
| !! | CTTTTTAATTGTGGAGGAAT+TGG | - | 37955:7783-7802 | MS.gene21306:intron | 30.0% |
| !!! | CTTTGGCATTTTTTGAGTAA+CGG | + | 37955:6601-6620 | MS.gene21306:intergenic | 30.0% |
| !!! | GCTTGTTTTTACTGTTGTTA+TGG | - | 37955:8691-8710 | MS.gene21306:intron | 30.0% |
| !!! | TTTGGCATTTTTTGAGTAAC+GGG | + | 37955:6600-6619 | MS.gene21306:intergenic | 30.0% |
| AACCTATACTATTGAGAACC+TGG | - | 37955:7759-7778 | MS.gene21306:intron | 35.0% | |
| AAGAGCCAAATAAGAGAAAG+TGG | + | 37955:8507-8526 | MS.gene21306:intergenic | 35.0% | |
| AAGGTTCGATTCTCAATTGT+TGG | - | 37955:5943-5962 | MS.gene21306:intron | 35.0% | |
| AATCGAATTATCGTCTCTTG+GGG | - | 37955:9577-9596 | MS.gene21306:CDS | 35.0% | |
| AGATAATTCCTGATGTCTCT+TGG | + | 37955:9750-9769 | MS.gene21306:intergenic | 35.0% | |
| ATACTTTCCAGGTACATATC+AGG | + | 37955:6648-6667 | MS.gene21306:intergenic | 35.0% | |
| ATATCTCATAGAGTGAAAGG+TGG | - | 37955:8281-8300 | MS.gene21306:CDS | 35.0% | |
| ATCATGCATCCAAGATACAT+GGG | + | 37955:8248-8267 | MS.gene21306:intergenic | 35.0% | |
| CAAAGAAAACACGATCATAC+TGG | + | 37955:7447-7466 | MS.gene21306:intergenic | 35.0% | |
| CACGTATACTTGACATGATA+AGG | + | 37955:6978-6997 | MS.gene21306:intergenic | 35.0% | |
| CGAGAATTTGAGGATAACTT+AGG | - | 37955:8005-8024 | MS.gene21306:intron | 35.0% | |
| GAATGTTGTTCTTTGACTAG+AGG | + | 37955:8225-8244 | MS.gene21306:intergenic | 35.0% | |
| GATTCACAGTTGAACGAATT+AGG | + | 37955:9633-9652 | MS.gene21306:intergenic | 35.0% | |
| TAGGTTAGGGGATATAAAGA+TGG | - | 37955:6439-6458 | MS.gene21306:intron | 35.0% | |
| TATCATGCATCCAAGATACA+TGG | + | 37955:8249-8268 | MS.gene21306:intergenic | 35.0% | |
| TCAACAATACCTGTAGGTTA+GGG | - | 37955:6426-6445 | MS.gene21306:intron | 35.0% | |
| TCATCATGCGAATGATGATT+GGG | - | 37955:7272-7291 | MS.gene21306:intron | 35.0% | |
| TGCAAATTCCAATGCAATGA+AGG | + | 37955:9107-9126 | MS.gene21306:intergenic | 35.0% | |
| TTCATCATGCGAATGATGAT+TGG | - | 37955:7271-7290 | MS.gene21306:intron | 35.0% | |
| ! | ATCTTAAGTACCGTCCAAAA+AGG | + | 37955:6783-6802 | MS.gene21306:intergenic | 35.0% |
| ! | CGTATTTGGTTTCATGTTAC+AGG | - | 37955:6140-6159 | MS.gene21306:intron | 35.0% |
| ! | GCATAGGATGGTAGATTTTA+CGG | - | 37955:7634-7653 | MS.gene21306:intron | 35.0% |
| ! | TATGCCACTTCAAAATGAGA+AGG | + | 37955:7619-7638 | MS.gene21306:intergenic | 35.0% |
| !! | ATTCGATTTTTGAGGATGAG+TGG | + | 37955:9565-9584 | MS.gene21306:intergenic | 35.0% |
| !! | ATTGCCTTCTCATTTTGAAG+TGG | - | 37955:7612-7631 | MS.gene21306:intron | 35.0% |
| !! | GAACCTGGTCTTTTTAATTG+TGG | - | 37955:7774-7793 | MS.gene21306:intron | 35.0% |
| !! | TTGATAATGGTCCTCAACAT+AGG | - | 37955:6493-6512 | MS.gene21306:CDS | 35.0% |
| !!! | GGTCTATTTTTGCACTGTTT+GGG | - | 37955:9444-9463 | MS.gene21306:intron | 35.0% |
| !!! | TGGTCTATTTTTGCACTGTT+TGG | - | 37955:9443-9462 | MS.gene21306:intron | 35.0% |
| !!! | TTCTCATTTTGAAGTGGCAT+AGG | - | 37955:7618-7637 | MS.gene21306:intron | 35.0% |
| !!! | TTGGCATTTTTTGAGTAACG+GGG | + | 37955:6599-6618 | MS.gene21306:intergenic | 35.0% |
| AACCAAGGACACCAATCAAA+AGG | + | 37955:7882-7901 | MS.gene21306:intergenic | 40.0% | |
| AAGCCTCATTACTTAGGTTC+CGG | - | 37955:7114-7133 | MS.gene21306:intron | 40.0% | |
| ACAACATTCCCCATGTATCT+TGG | - | 37955:8236-8255 | MS.gene21306:intron | 40.0% | |
| ACCAAGACCATTGTCAAAAG+GGG | + | 37955:9697-9716 | MS.gene21306:intergenic | 40.0% | |
| ACCAAGGACACCAATCAAAA+GGG | + | 37955:7881-7900 | MS.gene21306:intergenic | 40.0% | |
| ACTAGTTGACCGAGAATTTG+AGG | - | 37955:7995-8014 | MS.gene21306:intron | 40.0% | |
| AGACCAAGACCATTGTCAAA+AGG | + | 37955:9699-9718 | MS.gene21306:intergenic | 40.0% | |
| ATAAGGATACGACACGGATA+CGG | + | 37955:6961-6980 | MS.gene21306:intergenic | 40.0% | |
| ATAATGCCTTGTGACATGCT+TGG | - | 37955:8312-8331 | MS.gene21306:CDS | 40.0% | |
| ATATCAGGATGTATCCGTGT+CGG | + | 37955:6633-6652 | MS.gene21306:intergenic | 40.0% | |
| ATCGAGAAGCCTCATTACTT+AGG | - | 37955:7108-7127 | MS.gene21306:intron | 40.0% | |
| ATCTTTCTTTCCTCTTCTGC+CGG | + | 37955:7136-7155 | MS.gene21306:intergenic | 40.0% | |
| ATGGTCCTCAACATAGGAAT+TGG | - | 37955:6499-6518 | MS.gene21306:CDS | 40.0% | |
| ATTCCTGATGTCTCTTGGAA+AGG | + | 37955:9745-9764 | MS.gene21306:intergenic | 40.0% | |
| ATTGAGAATCGAACCTTAGC+AGG | + | 37955:5940-5959 | MS.gene21306:intergenic | 40.0% | |
| ATTGGTACTGTGGTGTTCAA+AGG | + | 37955:5700-5719 | MS.gene21306:intergenic | 40.0% | |
| ATTGTATGTAAGAGGAAGCC+TGG | + | 37955:7473-7492 | MS.gene21306:intergenic | 40.0% | |
| CAAATTCAGTACGAAACGCA+CGG | - | 37955:5778-5797 | MS.gene21306:intron | 40.0% | |
| CAACAATACCTGTAGGTTAG+GGG | - | 37955:6427-6446 | MS.gene21306:intron | 40.0% | |
| CCTCCACAATTAAAAAGACC+AGG | + | 37955:7780-7799 | MS.gene21306:intergenic | 40.0% | |
| CTTAGGTCAACAATACCTGT+AGG | - | 37955:6420-6439 | MS.gene21306:intron | 40.0% | |
| CTTTATATCCCCTAACCTAC+AGG | + | 37955:6438-6457 | MS.gene21306:intergenic | 40.0% | |
| GACATGATAAGGATACGACA+CGG | + | 37955:6967-6986 | MS.gene21306:intergenic | 40.0% | |
| GACCAAGACCATTGTCAAAA+GGG | + | 37955:9698-9717 | MS.gene21306:intergenic | 40.0% | |
| GACCAGGTTCTCAATAGTAT+AGG | + | 37955:7764-7783 | MS.gene21306:intergenic | 40.0% | |
| GATACATCCTGATATGTACC+TGG | - | 37955:6638-6657 | MS.gene21306:intron | 40.0% | |
| GGGAAGTAAATACTAGTGAG+TGG | - | 37955:6350-6369 | MS.gene21306:intron | 40.0% | |
| GTCAACAATACCTGTAGGTT+AGG | - | 37955:6425-6444 | MS.gene21306:intron | 40.0% | |
| GTTCTTTGACTAGAGGAAGA+AGG | + | 37955:8218-8237 | MS.gene21306:intergenic | 40.0% | |
| TAGGGGATATAAAGATGGCT+TGG | - | 37955:6444-6463 | MS.gene21306:intron | 40.0% | |
| TATGAGATCTGTTAGCAAGC+TGG | - | 37955:7403-7422 | MS.gene21306:intron | 40.0% | |
| TCATGCATCCAAGATACATG+GGG | + | 37955:8247-8266 | MS.gene21306:intergenic | 40.0% | |
| TGAATGACACTCTGTGTGAA+TGG | - | 37955:6542-6561 | MS.gene21306:CDS | 40.0% | |
| TGGTATATAATGTCTGGCAC+TGG | - | 37955:9423-9442 | MS.gene21306:intron | 40.0% | |
| TTCCAATGCAATGAAGGAAC+CGG | + | 37955:9101-9120 | MS.gene21306:intergenic | 40.0% | |
| ! | AGGATGGTAGATTTTACGGT+GGG | - | 37955:7638-7657 | MS.gene21306:intron | 40.0% |
| ! | ATCGTGTTTTCTTTGCATCC+AGG | - | 37955:7452-7471 | MS.gene21306:intron | 40.0% |
| ! | ATGGTCTTGGTCTATTCTAC+AGG | - | 37955:9706-9725 | MS.gene21306:CDS | 40.0% |
| ! | ATTTTATGGTGCTCCGGATA+CGG | - | 37955:6726-6745 | MS.gene21306:intron | 40.0% |
| ! | CAAGTTTTCTCTTCAGTGGA+AGG | - | 37955:8796-8815 | MS.gene21306:intron | 40.0% |
| ! | CATACCAGAACTCTTTTGAC+AGG | + | 37955:8043-8062 | MS.gene21306:intergenic | 40.0% |
| ! | GCATCAAGTTTTCTCTTCAG+TGG | - | 37955:8792-8811 | MS.gene21306:intron | 40.0% |
| ! | TAGGATGGTAGATTTTACGG+TGG | - | 37955:7637-7656 | MS.gene21306:intron | 40.0% |
| ! | TGGTCTTGGTCTATTCTACA+GGG | - | 37955:9707-9726 | MS.gene21306:CDS | 40.0% |
| !! | AATTCTTTGGGTTTTGGTGC+AGG | - | 37955:7049-7068 | MS.gene21306:intron | 40.0% |
| !! | CAATCGGTGTTGTTACTGTT+GGG | - | 37955:6165-6184 | MS.gene21306:intron | 40.0% |
| !! | CCTGGTCTTTTTAATTGTGG+AGG | - | 37955:7777-7796 | MS.gene21306:intron | 40.0% |
| !! | GTGATTAATTTGCCGATCTG+TGG | - | 37955:6382-6401 | MS.gene21306:intron | 40.0% |
| !! | TCAATCGGTGTTGTTACTGT+TGG | - | 37955:6164-6183 | MS.gene21306:intron | 40.0% |
| !!! | CATTTTGAAGTGGCATAGGA+TGG | - | 37955:7622-7641 | MS.gene21306:intron | 40.0% |
| ACCACCCTCAAACTTTGTTG+AGG | + | 37955:6228-6247 | MS.gene21306:intergenic | 45.0% | |
| AGACCTTTCCAAGAGACATC+AGG | - | 37955:9739-9758 | MS.gene21306:CDS | 45.0% | |
| AGCCCCAGTAGGATAGTTAT+CGG | + | 37955:7210-7229 | MS.gene21306:intergenic | 45.0% | |
| AGGTCCGATAACTATCCTAC+TGG | - | 37955:7203-7222 | MS.gene21306:intron | 45.0% | |
| ATGTAGGATGCAGCGAAAGA+AGG | - | 37955:8573-8592 | MS.gene21306:intron | 45.0% | |
| CAAAATCGACCCCAATGATG+CGG | - | 37955:8891-8910 | MS.gene21306:intron | 45.0% | |
| CAAGATGGGTCCAATAGTTG+TGG | - | 37955:8619-8638 | MS.gene21306:intron | 45.0% | |
| CAAGCTCACGAGATTTCTGA+TGG | + | 37955:8676-8695 | MS.gene21306:intergenic | 45.0% | |
| CAATAGTTGTGGTACAGACC+AGG | - | 37955:8630-8649 | MS.gene21306:intron | 45.0% | |
| CAGCACATATGGTCTGTCTT+GGG | + | 37955:7566-7585 | MS.gene21306:intergenic | 45.0% | |
| CATACACCAAGCATGTCACA+AGG | + | 37955:8321-8340 | MS.gene21306:intergenic | 45.0% | |
| CCAAGACCATTGTCAAAAGG+GGG | + | 37955:9696-9715 | MS.gene21306:intergenic | 45.0% | |
| CTGGTCTGTACCACAACTAT+TGG | + | 37955:8632-8651 | MS.gene21306:intergenic | 45.0% | |
| CTGTGATAGACCAGCACATA+TGG | + | 37955:7577-7596 | MS.gene21306:intergenic | 45.0% | |
| CTTAAAATGCAAGCCCCAGT+AGG | + | 37955:7221-7240 | MS.gene21306:intergenic | 45.0% | |
| GCATTTAGCAAGCCACAGAT+CGG | + | 37955:6397-6416 | MS.gene21306:intergenic | 45.0% | |
| GGTCCGATAACTATCCTACT+GGG | - | 37955:7204-7223 | MS.gene21306:intron | 45.0% | |
| GGTGCCTCAACAAAGTTTGA+GGG | - | 37955:6221-6240 | MS.gene21306:intron | 45.0% | |
| GTCCGATAACTATCCTACTG+GGG | - | 37955:7205-7224 | MS.gene21306:intron | 45.0% | |
| GTTGCCTGTCAAAAGAGTTC+TGG | - | 37955:8036-8055 | MS.gene21306:intron | 45.0% | |
| GTTGGCATTTAGGCTTGACT+TGG | - | 37955:7530-7549 | MS.gene21306:intron | 45.0% | |
| TACGTCAAGAAGTTGCACTC+AGG | - | 37955:7183-7202 | MS.gene21306:intron | 45.0% | |
| TCCAATGCAATGAAGGAACC+GGG | + | 37955:9100-9119 | MS.gene21306:intergenic | 45.0% | |
| TGTAGGATGCAGCGAAAGAA+GGG | - | 37955:8574-8593 | MS.gene21306:intron | 45.0% | |
| ! | ACAGTTCCCCCTTTTGACAA+TGG | - | 37955:9687-9706 | MS.gene21306:CDS | 45.0% |
| ! | AGGTCACTTTGCAATGCTTG+TGG | - | 37955:8932-8951 | MS.gene21306:intron | 45.0% |
| ! | ATGGTAGATTTTACGGTGGG+AGG | - | 37955:7641-7660 | MS.gene21306:intron | 45.0% |
| ! | CAAGCATTGCAAAGTGACCT+TGG | + | 37955:8932-8951 | MS.gene21306:intergenic | 45.0% |
| ! | CAATGCTTGTGGGCTTTTCT+GGG | - | 37955:8943-8962 | MS.gene21306:intron | 45.0% |
| ! | CTTTTCTGGGCAAATAGGGT+AGG | - | 37955:8956-8975 | MS.gene21306:intron | 45.0% |
| ! | GGTCACTTTGCAATGCTTGT+GGG | - | 37955:8933-8952 | MS.gene21306:intron | 45.0% |
| ! | TCACGAGATTTCTGATGGAC+TGG | + | 37955:8671-8690 | MS.gene21306:intergenic | 45.0% |
| ! | TCCAACTCCGATGCTGTTTA+CGG | - | 37955:5811-5830 | MS.gene21306:intron | 45.0% |
| ! | TCTGTTAGCAAGCTGGTCTA+CGG | - | 37955:7410-7429 | MS.gene21306:intron | 45.0% |
| ! | TGGGCTTTTCTGGGCAAATA+GGG | - | 37955:8952-8971 | MS.gene21306:intron | 45.0% |
| ! | TGGTAGATTTTACGGTGGGA+GGG | - | 37955:7642-7661 | MS.gene21306:intron | 45.0% |
| !! | CAAAGTATCGGTTTCCGACA+CGG | - | 37955:6616-6635 | MS.gene21306:intron | 45.0% |
| !! | GGCTTGCTAAATGCTAGCTT+AGG | - | 37955:6403-6422 | MS.gene21306:intron | 45.0% |
| !! | GGTTGAGAGTGTTCGTACAT+TGG | + | 37955:5679-5698 | MS.gene21306:intergenic | 45.0% |
| !! | GGTTTTGGTGCAGGAATCAA+TGG | - | 37955:7058-7077 | MS.gene21306:intron | 45.0% |
| !! | TGAGAGTGTTCGTACATTGG+TGG | + | 37955:5676-5695 | MS.gene21306:intergenic | 45.0% |
| !!! | AATTTTTTATTAAAGTATTT+TGG | - | 37955:6902-6921 | MS.gene21306:intron | 5.0% |
| !!! | TTTATTTTTTTTAAATAGAT+TGG | - | 37955:6684-6703 | MS.gene21306:intron | 5.0% |
| ACCTGATGCTGGTGTGAATG+CGG | - | 37955:6200-6219 | MS.gene21306:intron | 50.0% | |
| AGGGTAGGTGTTCTCTCCAA+AGG | - | 37955:8971-8990 | MS.gene21306:intron | 50.0% | |
| ATGCAATGAAGGAACCGGGA+AGG | + | 37955:9096-9115 | MS.gene21306:intergenic | 50.0% | |
| CAAAGTGACCTTGGACCAGA+TGG | + | 37955:8923-8942 | MS.gene21306:intergenic | 50.0% | |
| CCAAGACAGACCATATGTGC+TGG | - | 37955:7564-7583 | MS.gene21306:intron | 50.0% | |
| CCAGCACATATGGTCTGTCT+TGG | + | 37955:7567-7586 | MS.gene21306:intergenic | 50.0% | |
| CCTGCTGATAAGTCCTCGTA+GGG | - | 37955:8066-8085 | MS.gene21306:intron | 50.0% | |
| CGGTGCCTCAACAAAGTTTG+AGG | - | 37955:6220-6239 | MS.gene21306:intron | 50.0% | |
| CGTGTCGGAAACCGATACTT+TGG | + | 37955:6618-6637 | MS.gene21306:intergenic | 50.0% | |
| CTGCCGGAACCTAAGTAATG+AGG | + | 37955:7120-7139 | MS.gene21306:intergenic | 50.0% | |
| GCCTCAACAAAGTTTGAGGG+TGG | - | 37955:6224-6243 | MS.gene21306:intron | 50.0% | |
| GGATGTGAACAACCTGATGC+TGG | - | 37955:6189-6208 | MS.gene21306:intron | 50.0% | |
| TACAGACCAGGATTCTAGCC+AGG | - | 37955:8642-8661 | MS.gene21306:intron | 50.0% | |
| TACTTAGGTTCCGGCAGAAG+AGG | - | 37955:7123-7142 | MS.gene21306:intron | 50.0% | |
| TCAGTACGAAACGCACGGTA+TGG | - | 37955:5783-5802 | MS.gene21306:intron | 50.0% | |
| TCCCGGTTCCTTCATTGCAT+TGG | - | 37955:9096-9115 | MS.gene21306:intron | 50.0% | |
| TCCTGCTGATAAGTCCTCGT+AGG | - | 37955:8065-8084 | MS.gene21306:intron | 50.0% | |
| TGACTCTGTTACGCCTGCTA+AGG | - | 37955:5924-5943 | MS.gene21306:intron | 50.0% | |
| TGATAAGTCCTCGTAGGGCA+CGG | - | 37955:8071-8090 | MS.gene21306:intron | 50.0% | |
| TGCAATGAAGGAACCGGGAA+GGG | + | 37955:9095-9114 | MS.gene21306:intergenic | 50.0% | |
| ! | CCCCCTTTTGACAATGGTCT+TGG | - | 37955:9693-9712 | MS.gene21306:CDS | 50.0% |
| ! | CTGTTAGCAAGCTGGTCTAC+GGG | - | 37955:7411-7430 | MS.gene21306:intron | 50.0% |
| ! | GCAATGCTTGTGGGCTTTTC+TGG | - | 37955:8942-8961 | MS.gene21306:intron | 50.0% |
| ! | GTGGGCTTTTCTGGGCAAAT+AGG | - | 37955:8951-8970 | MS.gene21306:intron | 50.0% |
| ! | TCCGATGCTGTTTACGGCAA+CGG | - | 37955:5817-5836 | MS.gene21306:intron | 50.0% |
| !! | GCCCTTTTGATTGGTGTCCT+TGG | - | 37955:7877-7896 | MS.gene21306:intron | 50.0% |
| !! | TCGGTGTTGTTACTGTTGGG+TGG | - | 37955:6168-6187 | MS.gene21306:intron | 50.0% |
| !! | TTGATGTTGAGCGTCGATGC+CGG | + | 37955:5761-5780 | MS.gene21306:intergenic | 50.0% |
| !! | TTTCTGATGGACTGGCATCC+TGG | + | 37955:8663-8682 | MS.gene21306:intergenic | 50.0% |
| !! | TTTTTAGTCCGTGCCCTACG+AGG | + | 37955:8082-8101 | MS.gene21306:intergenic | 50.0% |
| ACACTCATGCATGCCCTTCC+CGG | - | 37955:9079-9098 | MS.gene21306:intron | 55.0% | |
| ACCACAGTACCAATCACCGC+CGG | - | 37955:5706-5725 | MS.gene21306:CDS | 55.0% | |
| ACCGCATTCACACCAGCATC+AGG | + | 37955:6204-6223 | MS.gene21306:intergenic | 55.0% | |
| ACGACACGGATACGGCGATA+TGG | + | 37955:6953-6972 | MS.gene21306:intergenic | 55.0% | |
| CCCTACGAGGACTTATCAGC+AGG | + | 37955:8069-8088 | MS.gene21306:intergenic | 55.0% | |
| CTATCATGGGCAGCCGTATC+CGG | + | 37955:6742-6761 | MS.gene21306:intergenic | 55.0% | |
| GCCGTTGCCGTAAACAGCAT+CGG | + | 37955:5821-5840 | MS.gene21306:intergenic | 55.0% | |
| GGAGTGAGAGAGTTCAGGAG+TGG | - | 37955:6465-6484 | MS.gene21306:intron | 55.0% | |
| GGCTTGGAGTGAGAGAGTTC+AGG | - | 37955:6460-6479 | MS.gene21306:intron | 55.0% | |
| TGGCATCCTGGCTAGAATCC+TGG | + | 37955:8651-8670 | MS.gene21306:intergenic | 55.0% | |
| ! | CAGCTTACGCTGTCGTTTCG+TGG | - | 37955:5886-5905 | MS.gene21306:intron | 55.0% |
| ! | GATGCTGTTTACGGCAACGG+CGG | - | 37955:5820-5839 | MS.gene21306:intron | 55.0% |
| ! | GCCGTAAACAGCATCGGAGT+TGG | + | 37955:5815-5834 | MS.gene21306:intergenic | 55.0% |
| ATGGCCCTCGCCGCATCATT+GGG | + | 37955:8904-8923 | MS.gene21306:intergenic | 60.0% | |
| GGAACCGTCATCGCTTTCGC+CGG | + | 37955:5728-5747 | MS.gene21306:intergenic | 60.0% | |
| ! | GGCGAAAGCGATGACGGTTC+CGG | - | 37955:5727-5746 | MS.gene21306:intron | 60.0% |
| ACCGCCGGCGAAAGCGATGA+CGG | - | 37955:5721-5740 | MS.gene21306:intron | 65.0% | |
| ACCGTCATCGCTTTCGCCGG+CGG | + | 37955:5725-5744 | MS.gene21306:intergenic | 65.0% | |
| ATGATGCGGCGAGGGCCATC+TGG | - | 37955:8905-8924 | MS.gene21306:intron | 65.0% | |
| CGACCCCAATGATGCGGCGA+GGG | - | 37955:8897-8916 | MS.gene21306:intron | 65.0% | |
| GATGGCCCTCGCCGCATCAT+TGG | + | 37955:8905-8924 | MS.gene21306:intergenic | 65.0% | |
| GCCGGCGGTGATTGGTACTG+TGG | + | 37955:5710-5729 | MS.gene21306:intergenic | 65.0% | |
| TCGACCCCAATGATGCGGCG+AGG | - | 37955:8896-8915 | MS.gene21306:intron | 65.0% | |
| TCGCTTTCGCCGGCGGTGAT+TGG | + | 37955:5718-5737 | MS.gene21306:intergenic | 65.0% | |
| TGGCCCTCGCCGCATCATTG+GGG | + | 37955:8903-8922 | MS.gene21306:intergenic | 65.0% | |
| !! | TTGAGCGTCGATGCCGGCGT+CGG | + | 37955:5755-5774 | MS.gene21306:intergenic | 65.0% |
| GGCGAGGGCCATCTGGTCCA+AGG | - | 37955:8912-8931 | MS.gene21306:intron | 70.0% | |
| !! | TGAGCGTCGATGCCGGCGTC+GGG | + | 37955:5754-5773 | MS.gene21306:intergenic | 70.0% |
| GACGGTTCCGGTCCCGACGC+CGG | - | 37955:5739-5758 | MS.gene21306:intron | 75.0% | |
| ! | GTCGATGCCGGCGTCGGGAC+CGG | + | 37955:5749-5768 | MS.gene21306:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 37955 | gene | 5667 | 9787 | 5667 | ID=MS.gene21306 |
| 37955 | mRNA | 5667 | 9787 | 5667 | ID=MS.gene21306.t1;Parent=MS.gene21306 |
| 37955 | exon | 9509 | 9787 | 9509 | ID=MS.gene21306.t1.exon1;Parent=MS.gene21306.t1 |
| 37955 | CDS | 9509 | 9787 | 9509 | ID=cds.MS.gene21306.t1;Parent=MS.gene21306.t1 |
| 37955 | exon | 9209 | 9292 | 9209 | ID=MS.gene21306.t1.exon2;Parent=MS.gene21306.t1 |
| 37955 | CDS | 9209 | 9292 | 9209 | ID=cds.MS.gene21306.t1;Parent=MS.gene21306.t1 |
| 37955 | exon | 8250 | 8383 | 8250 | ID=MS.gene21306.t1.exon3;Parent=MS.gene21306.t1 |
| 37955 | CDS | 8250 | 8383 | 8250 | ID=cds.MS.gene21306.t1;Parent=MS.gene21306.t1 |
| 37955 | exon | 6768 | 6875 | 6768 | ID=MS.gene21306.t1.exon4;Parent=MS.gene21306.t1 |
| 37955 | CDS | 6768 | 6875 | 6768 | ID=cds.MS.gene21306.t1;Parent=MS.gene21306.t1 |
| 37955 | exon | 6481 | 6586 | 6481 | ID=MS.gene21306.t1.exon5;Parent=MS.gene21306.t1 |
| 37955 | CDS | 6481 | 6586 | 6481 | ID=cds.MS.gene21306.t1;Parent=MS.gene21306.t1 |
| 37955 | exon | 5667 | 5726 | 5667 | ID=MS.gene21306.t1.exon6;Parent=MS.gene21306.t1 |
| 37955 | CDS | 5667 | 5726 | 5667 | ID=cds.MS.gene21306.t1;Parent=MS.gene21306.t1 |
| Gene Sequence |
| Protein sequence |
