Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050047.t1 | XP_003616032.1 | 82 | 172 | 31 | 0 | 1 | 172 | 66 | 237 | 5.50E-68 | 267.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050047.t1 | O22873 | 60.8 | 186 | 50 | 4 | 3 | 172 | 48 | 226 | 4.6e-47 | 189.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050047.t1 | G7K0T5 | 82.0 | 172 | 31 | 0 | 1 | 172 | 66 | 237 | 4.0e-68 | 267.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene050047.t1 | TF | bZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050047 | MS.gene64121 | 0.961971 | 2.52E-120 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050047.t1 | MTR_5g075390 | 86.047 | 172 | 24 | 0 | 1 | 172 | 66 | 237 | 1.05e-99 | 295 |
| MS.gene050047.t1 | MTR_5g075390 | 79.487 | 78 | 16 | 0 | 172 | 249 | 90 | 167 | 7.88e-38 | 136 |
| MS.gene050047.t1 | MTR_3g467120 | 60.185 | 216 | 49 | 5 | 1 | 181 | 53 | 266 | 1.34e-73 | 229 |
| MS.gene050047.t1 | MTR_3g467120 | 41.818 | 110 | 30 | 4 | 172 | 249 | 78 | 185 | 4.09e-15 | 74.3 |
| MS.gene050047.t1 | MTR_3g094020 | 61.905 | 147 | 49 | 1 | 26 | 172 | 47 | 186 | 3.14e-50 | 167 |
| MS.gene050047.t1 | MTR_2g099050 | 48.705 | 193 | 55 | 4 | 24 | 172 | 107 | 299 | 6.05e-42 | 148 |
| MS.gene050047.t1 | MTR_6g034945 | 59.231 | 130 | 50 | 3 | 46 | 173 | 102 | 230 | 1.04e-36 | 132 |
| MS.gene050047.t1 | MTR_4g072090 | 68.367 | 98 | 31 | 0 | 79 | 176 | 345 | 442 | 6.86e-34 | 127 |
| MS.gene050047.t1 | MTR_4g072090 | 70.213 | 94 | 28 | 0 | 79 | 172 | 345 | 438 | 1.94e-33 | 127 |
| MS.gene050047.t1 | MTR_1g023690 | 56.897 | 116 | 50 | 0 | 79 | 194 | 372 | 487 | 2.47e-20 | 90.1 |
| MS.gene050047.t1 | MTR_1g099030 | 38.017 | 121 | 70 | 3 | 38 | 158 | 73 | 188 | 4.84e-13 | 67.8 |
| MS.gene050047.t1 | MTR_2g090900 | 46.250 | 80 | 43 | 0 | 93 | 172 | 190 | 269 | 8.91e-13 | 67.4 |
| MS.gene050047.t1 | MTR_2g090900 | 46.250 | 80 | 43 | 0 | 93 | 172 | 190 | 269 | 9.75e-13 | 67.4 |
| MS.gene050047.t1 | MTR_4g079500 | 45.946 | 74 | 40 | 0 | 93 | 166 | 193 | 266 | 1.74e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050047.t1 | AT2G40620 | 60.215 | 186 | 51 | 4 | 3 | 172 | 48 | 226 | 5.67e-60 | 194 |
| MS.gene050047.t1 | AT2G40620 | 42.268 | 97 | 33 | 3 | 172 | 249 | 64 | 156 | 2.15e-12 | 66.6 |
| MS.gene050047.t1 | AT1G06850 | 55.696 | 158 | 55 | 3 | 29 | 172 | 70 | 226 | 9.48e-48 | 161 |
| MS.gene050047.t1 | AT2G31370 | 50.267 | 187 | 56 | 5 | 24 | 173 | 94 | 280 | 8.75e-43 | 149 |
| MS.gene050047.t1 | AT2G31370 | 50.267 | 187 | 56 | 5 | 24 | 173 | 94 | 280 | 1.83e-42 | 149 |
| MS.gene050047.t1 | AT2G31370 | 50.267 | 187 | 56 | 5 | 24 | 173 | 94 | 280 | 1.83e-42 | 149 |
| MS.gene050047.t1 | AT2G31370 | 50.267 | 187 | 56 | 5 | 24 | 173 | 94 | 280 | 1.83e-42 | 149 |
| MS.gene050047.t1 | AT2G31370 | 50.267 | 187 | 56 | 5 | 24 | 173 | 94 | 280 | 1.83e-42 | 149 |
| MS.gene050047.t1 | AT2G31370 | 50.267 | 187 | 56 | 5 | 24 | 173 | 94 | 280 | 1.83e-42 | 149 |
| MS.gene050047.t1 | AT2G31370 | 50.267 | 187 | 56 | 5 | 24 | 173 | 94 | 280 | 1.83e-42 | 149 |
| MS.gene050047.t1 | AT1G06070 | 47.514 | 181 | 63 | 3 | 24 | 172 | 108 | 288 | 9.56e-40 | 142 |
| MS.gene050047.t1 | AT1G06850 | 51.111 | 135 | 51 | 3 | 29 | 149 | 70 | 203 | 6.69e-35 | 125 |
| MS.gene050047.t1 | AT4G38900 | 71.277 | 94 | 27 | 0 | 79 | 172 | 379 | 472 | 3.41e-33 | 126 |
| MS.gene050047.t1 | AT4G38900 | 71.277 | 94 | 27 | 0 | 79 | 172 | 379 | 472 | 3.41e-33 | 126 |
| MS.gene050047.t1 | AT1G43700 | 68.041 | 97 | 29 | 1 | 78 | 172 | 176 | 272 | 7.57e-33 | 122 |
| MS.gene050047.t1 | AT4G38900 | 67.000 | 100 | 27 | 1 | 79 | 172 | 379 | 478 | 7.45e-31 | 120 |
| MS.gene050047.t1 | AT2G21230 | 65.957 | 94 | 32 | 0 | 79 | 172 | 355 | 448 | 3.12e-30 | 117 |
| MS.gene050047.t1 | AT2G21230 | 65.957 | 94 | 32 | 0 | 79 | 172 | 355 | 448 | 6.10e-30 | 117 |
| MS.gene050047.t1 | AT2G21230 | 65.957 | 94 | 32 | 0 | 79 | 172 | 355 | 448 | 6.10e-30 | 117 |
| MS.gene050047.t1 | AT2G21230 | 65.957 | 94 | 32 | 0 | 79 | 172 | 355 | 448 | 6.61e-30 | 117 |
| MS.gene050047.t1 | AT3G58120 | 42.857 | 84 | 48 | 0 | 94 | 177 | 202 | 285 | 3.82e-13 | 68.2 |
| MS.gene050047.t1 | AT2G42380 | 45.000 | 80 | 44 | 0 | 93 | 172 | 185 | 264 | 4.72e-13 | 67.4 |
| MS.gene050047.t1 | AT2G42380 | 47.297 | 74 | 39 | 0 | 93 | 166 | 185 | 258 | 1.56e-12 | 66.6 |
| MS.gene050047.t1 | AT3G58120 | 47.945 | 73 | 38 | 0 | 94 | 166 | 202 | 274 | 1.65e-12 | 66.6 |
| MS.gene050047.t1 | AT2G12900 | 33.696 | 92 | 61 | 0 | 94 | 185 | 116 | 207 | 2.65e-11 | 62.4 |
| MS.gene050047.t1 | AT2G12940 | 34.409 | 93 | 60 | 1 | 80 | 172 | 135 | 226 | 3.23e-11 | 62.4 |
Find 70 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGACATCGGCACAATAATT+TGG | 0.242899 | 5.4:+50880402 | MS.gene050047:CDS |
| GTCATTGGGTCGAGTTTGTT+TGG | 0.270016 | 5.4:+50877841 | MS.gene050047:CDS |
| TTGTTTGGGGAGACTATAGA+TGG | 0.281473 | 5.4:+50877856 | MS.gene050047:CDS |
| GTCGTTGGGTTGAGTTCGTT+TGG | 0.295731 | 5.4:+50880424 | MS.gene050047:CDS |
| CGACATAATAATTTGGTCAT+TGG | 0.303981 | 5.4:+50877826 | MS.gene050047:CDS |
| GAGACATCGACATAATAATT+TGG | 0.326453 | 5.4:+50877819 | MS.gene050047:CDS |
| CAAAGCTCAGCCAACTTATC+AGG | 0.329404 | 5.4:-50877895 | None:intergenic |
| TCATTGGGTCGAGTTTGTTT+GGG | 0.335881 | 5.4:+50877842 | MS.gene050047:CDS |
| CAAAGCTCAGCCAACTTATC+AGG | 0.343237 | 5.4:-50880478 | None:intergenic |
| TCGTTGGGTTGAGTTCGTTT+GGG | 0.362752 | 5.4:+50880425 | MS.gene050047:CDS |
| TGGAGATGCTGGAGCAGATC+CGG | 0.379190 | 5.4:+50877759 | MS.gene050047:CDS |
| TGGAGATGCTGGAGCAGATC+CGG | 0.379190 | 5.4:+50880342 | MS.gene050047:CDS |
| CTGATAAGTTGGCTGAGCTT+TGG | 0.398977 | 5.4:+50877896 | MS.gene050047:CDS |
| CTGATAAGTTGGCTGAGCTT+TGG | 0.400539 | 5.4:+50880479 | MS.gene050047:CDS |
| TTCGCACATTTAGGATCAAC+AGG | 0.413831 | 5.4:-50877919 | None:intergenic |
| GAGTTCGTTTGGGGAGACTA+TGG | 0.418532 | 5.4:+50880435 | MS.gene050047:CDS |
| GACATAATAATTTGGTCATT+GGG | 0.421535 | 5.4:+50877827 | MS.gene050047:CDS |
| GGCACAATAATTTGGTCGTT+GGG | 0.432993 | 5.4:+50880410 | MS.gene050047:CDS |
| CGGCACAATAATTTGGTCGT+TGG | 0.438010 | 5.4:+50880409 | MS.gene050047:CDS |
| CGAAGGGGCAGAGAAGAATC+AGG | 0.454515 | 5.4:+50877789 | MS.gene050047:CDS |
| TGAATGGATCGGACGGGGAG+AGG | 0.474920 | 5.4:-50877654 | None:intergenic |
| TCTGCCCCTTCGTTTCCTCC+CGG | 0.478769 | 5.4:-50877778 | None:intergenic |
| CGAAGAGGCAGAGAAGAATC+CGG | 0.481169 | 5.4:+50880372 | MS.gene050047:CDS |
| TCTGCCTCTTCGCTTCCTCC+CGG | 0.484387 | 5.4:-50880361 | None:intergenic |
| AGCTATGTCTCCTGATAAGT+TGG | 0.488757 | 5.4:+50877885 | MS.gene050047:CDS |
| AGCTATGCCTCCTGATAAGT+TGG | 0.499388 | 5.4:+50880468 | MS.gene050047:CDS |
| ATGGACAGACTTGGAGATGC+TGG | 0.503770 | 5.4:+50877748 | MS.gene050047:CDS |
| ATGGACAGACTTGGAGATGC+TGG | 0.503770 | 5.4:+50880331 | MS.gene050047:CDS |
| TGCCCAACTGACACTATACC+AGG | 0.512274 | 5.4:+50879743 | MS.gene050047:CDS |
| GTTGATGATCTGCCGGTGAA+TGG | 0.513134 | 5.4:-50877670 | None:intergenic |
| TGCTCATTCAAAAGAGAGAA+AGG | 0.514267 | 5.4:+50879656 | MS.gene050047:CDS |
| TTGATCCTAAATGTGCGAAA+AGG | 0.514958 | 5.4:+50880506 | MS.gene050047:CDS |
| TACATTGACATGGACAGACT+TGG | 0.516336 | 5.4:+50877739 | MS.gene050047:CDS |
| TACATTGACATGGACAGACT+TGG | 0.516336 | 5.4:+50880322 | MS.gene050047:CDS |
| TCGTTTGGGGAGACTATGGA+TGG | 0.520293 | 5.4:+50880439 | MS.gene050047:CDS |
| GCAGATCCGGGAGGAAACGA+AGG | 0.527514 | 5.4:+50877772 | MS.gene050047:CDS |
| TAAGCTCCGTCCGCAAGCAA+TGG | 0.531437 | 5.4:+50880208 | MS.gene050047:CDS |
| CAGATCCGGGAGGAAACGAA+GGG | 0.534632 | 5.4:+50877773 | MS.gene050047:CDS |
| TTGATCCTAAATGTGCGAAA+AGG | 0.537313 | 5.4:+50877923 | MS.gene050047:CDS |
| GGAGATGCTGGAGCAGATCC+GGG | 0.539976 | 5.4:+50877760 | MS.gene050047:CDS |
| GGAGATGCTGGAGCAGATCC+GGG | 0.539976 | 5.4:+50880343 | MS.gene050047:CDS |
| GTTGCTCCATTGCTTGCGGA+CGG | 0.540579 | 5.4:-50880214 | None:intergenic |
| TGCCGGTGAATGGATCGGAC+GGG | 0.541814 | 5.4:-50877660 | None:intergenic |
| AACCTGGTATAGTGTCAGTT+GGG | 0.543208 | 5.4:-50879745 | None:intergenic |
| TCCCCGTCCGATCCATTCAC+CGG | 0.545509 | 5.4:+50877658 | MS.gene050047:CDS |
| GCCGGTGAATGGATCGGACG+GGG | 0.546664 | 5.4:-50877659 | None:intergenic |
| TGTTTGGGGAGACTATAGAT+GGG | 0.548419 | 5.4:+50877857 | MS.gene050047:CDS |
| GAGTTGTAGCATCAGTCTGT+AGG | 0.551575 | 5.4:-50879716 | None:intergenic |
| CTGCCGGTGAATGGATCGGA+CGG | 0.557304 | 5.4:-50877661 | None:intergenic |
| AAACCTGGTATAGTGTCAGT+TGG | 0.558403 | 5.4:-50879746 | None:intergenic |
| AGTTGTAGCATCAGTCTGTA+GGG | 0.565606 | 5.4:-50879715 | None:intergenic |
| GCTAGCAGTTGATGATCTGC+CGG | 0.567306 | 5.4:-50877677 | None:intergenic |
| TGCCGATGTCTCAACCTCAC+CGG | 0.569694 | 5.4:-50880391 | None:intergenic |
| CGTTGGGTTGAGTTCGTTTG+GGG | 0.570030 | 5.4:+50880426 | MS.gene050047:CDS |
| CAACAAACACATCTTCATGA+TGG | 0.580671 | 5.4:+50880233 | MS.gene050047:CDS |
| ACTGCTAGCCTCGATGAGAT+CGG | 0.580821 | 5.4:+50877691 | MS.gene050047:CDS |
| TTTCGCACATTTAGGATCAA+CGG | 0.584714 | 5.4:-50880503 | None:intergenic |
| CATTGGGTCGAGTTTGTTTG+GGG | 0.585199 | 5.4:+50877843 | MS.gene050047:CDS |
| TGATCTGCCGGTGAATGGAT+CGG | 0.590158 | 5.4:-50877665 | None:intergenic |
| ATCCGGTGAGGTTGAGACAT+CGG | 0.592715 | 5.4:+50880389 | MS.gene050047:CDS |
| GTTTGTTGCTCCATTGCTTG+CGG | 0.611180 | 5.4:-50880218 | None:intergenic |
| AGCTCAGCCAACTTATCAGG+AGG | 0.632846 | 5.4:-50880475 | None:intergenic |
| AGATCCGGGAGGAAGCGAAG+AGG | 0.647845 | 5.4:+50880357 | MS.gene050047:CDS |
| CGTTTGGGGAGACTATGGAT+GGG | 0.670001 | 5.4:+50880440 | MS.gene050047:CDS |
| GGGCAGAGAAGAATCAGGTG+AGG | 0.681356 | 5.4:+50877794 | MS.gene050047:CDS |
| AGGCAGAGAAGAATCCGGTG+AGG | 0.692593 | 5.4:+50880377 | MS.gene050047:CDS |
| CTTCGGATCCGATCTCATCG+AGG | 0.697774 | 5.4:-50877699 | None:intergenic |
| GATGCTGGAGCAGATCCGGG+AGG | 0.709228 | 5.4:+50877763 | MS.gene050047:CDS |
| GATGCTGGAGCAGATCCGGG+AGG | 0.709228 | 5.4:+50880346 | MS.gene050047:CDS |
| AGATCCGGGAGGAAACGAAG+GGG | 0.720038 | 5.4:+50877774 | MS.gene050047:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGGTAAAATAAATTAATA+AGG | + | chr5.4:50878107-50878126 | MS.gene050047:intron | 10.0% |
| !!! | TTGAAATTTTTTAATAGTTT+GGG | + | chr5.4:50878879-50878898 | MS.gene050047:intron | 10.0% |
| !! | TTATACAAAAAGATTCTTAA+TGG | - | chr5.4:50879228-50879247 | None:intergenic | 15.0% |
| !!! | ATTAGTTAATTTTTCAATGA+TGG | + | chr5.4:50877993-50878012 | MS.gene050047:intron | 15.0% |
| !!! | GTTGAAATTTTTTAATAGTT+TGG | + | chr5.4:50878878-50878897 | MS.gene050047:intron | 15.0% |
| !!! | TCATATTTTTTAGCTATAAA+TGG | - | chr5.4:50879922-50879941 | None:intergenic | 15.0% |
| !!! | TCTAGAACATTTTATATAAA+AGG | - | chr5.4:50879983-50880002 | None:intergenic | 15.0% |
| !!! | TGATTTTCTTTTATTAGTTT+AGG | + | chr5.4:50878064-50878083 | MS.gene050047:intron | 15.0% |
| !!! | TTAGTTAATTTTTCAATGAT+GGG | + | chr5.4:50877994-50878013 | MS.gene050047:intron | 15.0% |
| !!! | TTTTTTTTTATATAGTGATG+AGG | + | chr5.4:50879139-50879158 | MS.gene050047:intron | 15.0% |
| !! | AATTTATGATTAGAGATTAG+AGG | + | chr5.4:50879202-50879221 | MS.gene050047:intron | 20.0% |
| !! | ATCTTTAACATATTGTAAGA+AGG | - | chr5.4:50880271-50880290 | None:intergenic | 20.0% |
| !! | TCTTTAACATATTGTAAGAA+GGG | - | chr5.4:50880270-50880289 | None:intergenic | 20.0% |
| !!! | AACCAAGAAAAAACATTTTT+AGG | + | chr5.4:50878674-50878693 | MS.gene050047:intron | 20.0% |
| !!! | AAGAAAAAACATTTTTAGGT+AGG | + | chr5.4:50878678-50878697 | MS.gene050047:intron | 20.0% |
| !!! | ACTAGCTTATAAATATGATA+TGG | + | chr5.4:50878234-50878253 | MS.gene050047:intron | 20.0% |
| !!! | AGAAAAAACATTTTTAGGTA+GGG | + | chr5.4:50878679-50878698 | MS.gene050047:intron | 20.0% |
| !!! | CTTCTTAGATTTAAACTTTT+GGG | + | chr5.4:50879479-50879498 | MS.gene050047:intron | 20.0% |
| !!! | GTTTTGTTTATTGGATTTAT+CGG | + | chr5.4:50879831-50879850 | MS.gene050047:intron | 20.0% |
| !!! | TACCTAAAAATGTTTTTTCT+TGG | - | chr5.4:50878679-50878698 | None:intergenic | 20.0% |
| !!! | TAGCTAAAAAATATGACTTT+TGG | + | chr5.4:50879926-50879945 | MS.gene050047:intron | 20.0% |
| !!! | TATGTTGAGTTTTTGTTAAT+TGG | + | chr5.4:50878025-50878044 | MS.gene050047:intron | 20.0% |
| !!! | TTCTTAGATTTAAACTTTTG+GGG | + | chr5.4:50879480-50879499 | MS.gene050047:intron | 20.0% |
| !!! | TTGTTTTGATAATTTTTGTG+TGG | + | chr5.4:50878971-50878990 | MS.gene050047:intron | 20.0% |
| ! | AATAACTGATAAGCTTATAG+CGG | + | chr5.4:50878130-50878149 | MS.gene050047:intron | 25.0% |
| ! | ATAAATGGAACAAGGATATA+TGG | - | chr5.4:50879907-50879926 | None:intergenic | 25.0% |
| ! | CGATTCCAATTATAAACAAA+AGG | + | chr5.4:50878635-50878654 | MS.gene050047:intron | 25.0% |
| ! | CGTTAAAAAATTCAGCAATT+GGG | - | chr5.4:50878806-50878825 | None:intergenic | 25.0% |
| ! | CTTTAACATATTGTAAGAAG+GGG | - | chr5.4:50880269-50880288 | None:intergenic | 25.0% |
| ! | GACATAATAATTTGGTCATT+GGG | + | chr5.4:50877827-50877846 | MS.gene050047:CDS | 25.0% |
| ! | TACTGTACATTTAATCACTT+TGG | + | chr5.4:50880007-50880026 | MS.gene050047:intron | 25.0% |
| ! | TCGTTAAAAAATTCAGCAAT+TGG | - | chr5.4:50878807-50878826 | None:intergenic | 25.0% |
| ! | TGCTAGATTTAAACAAATGA+GGG | - | chr5.4:50878556-50878575 | None:intergenic | 25.0% |
| ! | TGTTTATAATTGGAATCGAT+TGG | - | chr5.4:50878633-50878652 | None:intergenic | 25.0% |
| ! | TGTTTGTGAATAATTCATCA+TGG | + | chr5.4:50880066-50880085 | MS.gene050047:intron | 25.0% |
| ! | TTGCTAGATTTAAACAAATG+AGG | - | chr5.4:50878557-50878576 | None:intergenic | 25.0% |
| !! | AGTTTAGGCAATTTAAAACA+AGG | + | chr5.4:50878079-50878098 | MS.gene050047:intron | 25.0% |
| !! | ATTTAATCACTTTGGTGATT+TGG | + | chr5.4:50880015-50880034 | MS.gene050047:intron | 25.0% |
| !! | ATTTCCAAGACCAATTTTAA+AGG | - | chr5.4:50878604-50878623 | None:intergenic | 25.0% |
| !! | GCTTCTTAGATTTAAACTTT+TGG | + | chr5.4:50879478-50879497 | MS.gene050047:intron | 25.0% |
| !! | TCTTAGATTTAAACTTTTGG+GGG | + | chr5.4:50879481-50879500 | MS.gene050047:intron | 25.0% |
| !! | TTTAATCACTTTGGTGATTT+GGG | + | chr5.4:50880016-50880035 | MS.gene050047:intron | 25.0% |
| !! | TTTCCAAGACCAATTTTAAA+GGG | - | chr5.4:50878603-50878622 | None:intergenic | 25.0% |
| !!! | AAGCTCCTTTTGTTTATAAT+TGG | - | chr5.4:50878643-50878662 | None:intergenic | 25.0% |
| !!! | AGTAACTCTGTTTTGTTTAT+TGG | + | chr5.4:50879822-50879841 | MS.gene050047:intron | 25.0% |
| !!! | TTTTAGCTATAAATGGAACA+AGG | - | chr5.4:50879915-50879934 | None:intergenic | 25.0% |
| AAGCTCAAATACGTCAAATA+TGG | + | chr5.4:50879290-50879309 | MS.gene050047:intron | 30.0% | |
| AAGTTTAAATCTAAGAAGCC+CGG | - | chr5.4:50879477-50879496 | None:intergenic | 30.0% | |
| ACTCATCTCAATTATTTGAC+TGG | + | chr5.4:50879011-50879030 | MS.gene050047:intron | 30.0% | |
| CACTCTCATACTTAAATTTG+TGG | + | chr5.4:50880103-50880122 | MS.gene050047:intron | 30.0% | |
| CGACATAATAATTTGGTCAT+TGG | + | chr5.4:50877826-50877845 | MS.gene050047:CDS | 30.0% | |
| CGTCAAATATGGAAAAACAT+TGG | + | chr5.4:50879301-50879320 | MS.gene050047:intron | 30.0% | |
| CTCATCTCAATTATTTGACT+GGG | + | chr5.4:50879012-50879031 | MS.gene050047:intron | 30.0% | |
| GAGACATCGACATAATAATT+TGG | + | chr5.4:50877819-50877838 | MS.gene050047:CDS | 30.0% | |
| GTAAGTTCTATGAGTAATTG+CGG | + | chr5.4:50879084-50879103 | MS.gene050047:intron | 30.0% | |
| TCCATATTGTTCTATGTATC+CGG | + | chr5.4:50879455-50879474 | MS.gene050047:intron | 30.0% | |
| ! | AAAAACATTGGTGTTTGACA+TGG | + | chr5.4:50879313-50879332 | MS.gene050047:intron | 30.0% |
| ! | ACAATCTAGAATCACATAAG+AGG | - | chr5.4:50879066-50879085 | None:intergenic | 30.0% |
| ! | ATTTAAAACAAGGCTCTGTT+TGG | + | chr5.4:50878089-50878108 | MS.gene050047:intron | 30.0% |
| ! | CAATCTAGAATCACATAAGA+GGG | - | chr5.4:50879065-50879084 | None:intergenic | 30.0% |
| ! | CTAATTGATTTAGCACAACT+CGG | - | chr5.4:50878440-50878459 | None:intergenic | 30.0% |
| !! | AATTTTAAAGGGGTGATATG+AGG | - | chr5.4:50878592-50878611 | None:intergenic | 30.0% |
| !! | ATTTTAAAGGGGTGATATGA+GGG | - | chr5.4:50878591-50878610 | None:intergenic | 30.0% |
| !! | TCATATCACCCCTTTAAAAT+TGG | + | chr5.4:50878591-50878610 | MS.gene050047:intron | 30.0% |
| !! | TTCCAAGACCAATTTTAAAG+GGG | - | chr5.4:50878602-50878621 | None:intergenic | 30.0% |
| !!! | GGTCTTTTTTAAGTCAAATG+AGG | + | chr5.4:50878323-50878342 | MS.gene050047:intron | 30.0% |
| !!! | TTATTTTAGAGAGACACAAC+AGG | + | chr5.4:50880161-50880180 | MS.gene050047:intron | 30.0% |
| ATTATTTGACTGGGATGAGT+TGG | + | chr5.4:50879021-50879040 | MS.gene050047:intron | 35.0% | |
| CAACAAACACATCTTCATGA+TGG | + | chr5.4:50880233-50880252 | MS.gene050047:CDS | 35.0% | |
| CCATATTGTTCTATGTATCC+GGG | + | chr5.4:50879456-50879475 | MS.gene050047:intron | 35.0% | |
| CGTCAAAAACAAGTCATCTT+CGG | - | chr5.4:50877719-50877738 | None:intergenic | 35.0% | |
| CTGATTGAATTCGTAGTGTT+TGG | + | chr5.4:50878195-50878214 | MS.gene050047:intron | 35.0% | |
| GATAAATGTCAACACAAACC+TGG | - | chr5.4:50879764-50879783 | None:intergenic | 35.0% | |
| TGACTTAAAAAAGACCCGTT+TGG | - | chr5.4:50878319-50878338 | None:intergenic | 35.0% | |
| TGCTCATTCAAAAGAGAGAA+AGG | + | chr5.4:50879656-50879675 | MS.gene050047:CDS | 35.0% | |
| TTGATCCTAAATGTGCGAAA+AGG | + | chr5.4:50877923-50877942 | MS.gene050047:CDS | 35.0% | |
| TTGTTGTGTGTTCAATCTGT+CGG | + | chr5.4:50878405-50878424 | MS.gene050047:intron | 35.0% | |
| ! | ACAAACCTTTTCGCACATTT+AGG | - | chr5.4:50880514-50880533 | None:intergenic | 35.0% |
| ! | ACACATTTGTTAGCGTATCT+TGG | + | chr5.4:50879380-50879399 | MS.gene050047:intron | 35.0% |
| ! | GTTTTTGACGTACATTGACA+TGG | + | chr5.4:50877729-50877748 | MS.gene050047:CDS | 35.0% |
| ! | TTTCGCACATTTAGGATCAA+CGG | - | chr5.4:50877923-50877942 | None:intergenic | 35.0% |
| !! | AAGTTTGTTGTGTGTGATTG+TGG | + | chr5.4:50878929-50878948 | MS.gene050047:intron | 35.0% |
| !! | TAGATTTAAACTTTTGGGGG+TGG | + | chr5.4:50879484-50879503 | MS.gene050047:intron | 35.0% |
| !!! | ACATTTTTAGGTAGGGAACT+AGG | + | chr5.4:50878686-50878705 | MS.gene050047:intron | 35.0% |
| AAACCTGGTATAGTGTCAGT+TGG | - | chr5.4:50879749-50879768 | None:intergenic | 40.0% | |
| AACCTGGTATAGTGTCAGTT+GGG | - | chr5.4:50879748-50879767 | None:intergenic | 40.0% | |
| AGAACGTCACAGTTACCAAA+CGG | + | chr5.4:50878301-50878320 | MS.gene050047:intron | 40.0% | |
| AGCCAGATACACGACAAAAT+AGG | - | chr5.4:50878759-50878778 | None:intergenic | 40.0% | |
| AGCTATGTCTCCTGATAAGT+TGG | + | chr5.4:50877885-50877904 | MS.gene050047:CDS | 40.0% | |
| AGTTGTAGCATCAGTCTGTA+GGG | - | chr5.4:50879718-50879737 | None:intergenic | 40.0% | |
| CCAGATACACGACAAAATAG+GGG | - | chr5.4:50878757-50878776 | None:intergenic | 40.0% | |
| CCCGGATACATAGAACAATA+TGG | - | chr5.4:50879459-50879478 | None:intergenic | 40.0% | |
| CTAGAATCACATAAGAGGGT+TGG | - | chr5.4:50879061-50879080 | None:intergenic | 40.0% | |
| GAACAAGGATATATGGCTCA+AGG | - | chr5.4:50879900-50879919 | None:intergenic | 40.0% | |
| GAGACATCGGCACAATAATT+TGG | + | chr5.4:50880402-50880421 | MS.gene050047:CDS | 40.0% | |
| GCCAGATACACGACAAAATA+GGG | - | chr5.4:50878758-50878777 | None:intergenic | 40.0% | |
| GGCAACTAGTTCAAGATGAA+GGG | - | chr5.4:50878736-50878755 | None:intergenic | 40.0% | |
| GGCACAATAATTTGGTCGTT+GGG | + | chr5.4:50880410-50880429 | MS.gene050047:CDS | 40.0% | |
| GTATCTGGCTATGTGTTCAA+TGG | + | chr5.4:50878769-50878788 | MS.gene050047:intron | 40.0% | |
| GTTTACTCACACTGCAGAAA+CGG | - | chr5.4:50878527-50878546 | None:intergenic | 40.0% | |
| TACATTGACATGGACAGACT+TGG | + | chr5.4:50877739-50877758 | MS.gene050047:CDS | 40.0% | |
| TGTTTGGGGAGACTATAGAT+GGG | + | chr5.4:50877857-50877876 | MS.gene050047:CDS | 40.0% | |
| TTGTTTGGGGAGACTATAGA+TGG | + | chr5.4:50877856-50877875 | MS.gene050047:CDS | 40.0% | |
| ! | AACTCCACTAACAGCCATTT+TGG | + | chr5.4:50878496-50878515 | MS.gene050047:intron | 40.0% |
| ! | ACGAACCTTTTCGCACATTT+AGG | - | chr5.4:50877931-50877950 | None:intergenic | 40.0% |
| ! | TCATTGGGTCGAGTTTGTTT+GGG | + | chr5.4:50877842-50877861 | MS.gene050047:CDS | 40.0% |
| ! | TTCGCACATTTAGGATCAAC+AGG | - | chr5.4:50877922-50877941 | None:intergenic | 40.0% |
| !! | ATTTAAACTTTTGGGGGTGG+AGG | + | chr5.4:50879487-50879506 | MS.gene050047:intron | 40.0% |
| !! | CACCCCTTTAAAATTGGTCT+TGG | + | chr5.4:50878597-50878616 | MS.gene050047:intron | 40.0% |
| AGCTATGCCTCCTGATAAGT+TGG | + | chr5.4:50880468-50880487 | MS.gene050047:CDS | 45.0% | |
| CAAAGCTCAGCCAACTTATC+AGG | - | chr5.4:50877898-50877917 | None:intergenic | 45.0% | |
| CGGCACAATAATTTGGTCGT+TGG | + | chr5.4:50880409-50880428 | MS.gene050047:CDS | 45.0% | |
| GAACGTCACAGTTACCAAAC+GGG | + | chr5.4:50878302-50878321 | MS.gene050047:intron | 45.0% | |
| GAGTTGTAGCATCAGTCTGT+AGG | - | chr5.4:50879719-50879738 | None:intergenic | 45.0% | |
| GGGCAACTAGTTCAAGATGA+AGG | - | chr5.4:50878737-50878756 | None:intergenic | 45.0% | |
| GTGGAGGATAAAGTGAGAGA+GGG | + | chr5.4:50879503-50879522 | MS.gene050047:intron | 45.0% | |
| TGGAGGATAAAGTGAGAGAG+GGG | + | chr5.4:50879504-50879523 | MS.gene050047:intron | 45.0% | |
| TTTAGCACAACTCGGAGAGA+AGG | - | chr5.4:50878432-50878451 | None:intergenic | 45.0% | |
| ! | CATTGGGTCGAGTTTGTTTG+GGG | + | chr5.4:50877843-50877862 | MS.gene050047:CDS | 45.0% |
| ! | CCCCTATTTTGTCGTGTATC+TGG | + | chr5.4:50878754-50878773 | MS.gene050047:intron | 45.0% |
| ! | CTGATAAGTTGGCTGAGCTT+TGG | + | chr5.4:50877896-50877915 | MS.gene050047:CDS | 45.0% |
| ! | GTCATTGGGTCGAGTTTGTT+TGG | + | chr5.4:50877841-50877860 | MS.gene050047:CDS | 45.0% |
| ! | GTTTGTTGCTCCATTGCTTG+CGG | - | chr5.4:50880221-50880240 | None:intergenic | 45.0% |
| !! | TCGTTGGGTTGAGTTCGTTT+GGG | + | chr5.4:50880425-50880444 | MS.gene050047:CDS | 45.0% |
| AGCTCAGCCAACTTATCAGG+AGG | - | chr5.4:50877895-50877914 | None:intergenic | 50.0% | |
| ATCCGGTGAGGTTGAGACAT+CGG | + | chr5.4:50880389-50880408 | MS.gene050047:CDS | 50.0% | |
| ATGGACAGACTTGGAGATGC+TGG | + | chr5.4:50877748-50877767 | MS.gene050047:CDS | 50.0% | |
| CAGAAACGGAGTGGCCAAAA+TGG | - | chr5.4:50878513-50878532 | None:intergenic | 50.0% | |
| CGAAGAGGCAGAGAAGAATC+CGG | + | chr5.4:50880372-50880391 | MS.gene050047:CDS | 50.0% | |
| CGTTTGGGGAGACTATGGAT+GGG | + | chr5.4:50880440-50880459 | MS.gene050047:CDS | 50.0% | |
| GAGTTCGTTTGGGGAGACTA+TGG | + | chr5.4:50880435-50880454 | MS.gene050047:CDS | 50.0% | |
| GGTGGAGGATAAAGTGAGAG+AGG | + | chr5.4:50879502-50879521 | MS.gene050047:intron | 50.0% | |
| GTGGCCAAAATGGCTGTTAG+TGG | - | chr5.4:50878503-50878522 | None:intergenic | 50.0% | |
| TCGTTTGGGGAGACTATGGA+TGG | + | chr5.4:50880439-50880458 | MS.gene050047:CDS | 50.0% | |
| TGATCTGCCGGTGAATGGAT+CGG | - | chr5.4:50877668-50877687 | None:intergenic | 50.0% | |
| TGCCCAACTGACACTATACC+AGG | + | chr5.4:50879743-50879762 | MS.gene050047:CDS | 50.0% | |
| ! | ACTGCTAGCCTCGATGAGAT+CGG | + | chr5.4:50877691-50877710 | MS.gene050047:CDS | 50.0% |
| !! | CGTTGGGTTGAGTTCGTTTG+GGG | + | chr5.4:50880426-50880445 | MS.gene050047:CDS | 50.0% |
| !! | GCTAGCAGTTGATGATCTGC+CGG | - | chr5.4:50877680-50877699 | None:intergenic | 50.0% |
| !! | GTCGTTGGGTTGAGTTCGTT+TGG | + | chr5.4:50880424-50880443 | MS.gene050047:CDS | 50.0% |
| !! | GTTGATGATCTGCCGGTGAA+TGG | - | chr5.4:50877673-50877692 | None:intergenic | 50.0% |
| AGATCCGGGAGGAAACGAAG+GGG | + | chr5.4:50877774-50877793 | MS.gene050047:CDS | 55.0% | |
| AGGCAGAGAAGAATCCGGTG+AGG | + | chr5.4:50880377-50880396 | MS.gene050047:CDS | 55.0% | |
| CAGATCCGGGAGGAAACGAA+GGG | + | chr5.4:50877773-50877792 | MS.gene050047:CDS | 55.0% | |
| CGAAGGGGCAGAGAAGAATC+AGG | + | chr5.4:50877789-50877808 | MS.gene050047:CDS | 55.0% | |
| CTCACACTGCAGAAACGGAG+TGG | - | chr5.4:50878522-50878541 | None:intergenic | 55.0% | |
| CTTCGGATCCGATCTCATCG+AGG | - | chr5.4:50877702-50877721 | None:intergenic | 55.0% | |
| GGGCAGAGAAGAATCAGGTG+AGG | + | chr5.4:50877794-50877813 | MS.gene050047:CDS | 55.0% | |
| GTTGCTCCATTGCTTGCGGA+CGG | - | chr5.4:50880217-50880236 | None:intergenic | 55.0% | |
| TAAGCTCCGTCCGCAAGCAA+TGG | + | chr5.4:50880208-50880227 | MS.gene050047:CDS | 55.0% | |
| TGCCGATGTCTCAACCTCAC+CGG | - | chr5.4:50880394-50880413 | None:intergenic | 55.0% | |
| TGGAGATGCTGGAGCAGATC+CGG | + | chr5.4:50877759-50877778 | MS.gene050047:CDS | 55.0% | |
| AGATCCGGGAGGAAGCGAAG+AGG | + | chr5.4:50880357-50880376 | MS.gene050047:CDS | 60.0% | |
| CTGCCGGTGAATGGATCGGA+CGG | - | chr5.4:50877664-50877683 | None:intergenic | 60.0% | |
| GCAGATCCGGGAGGAAACGA+AGG | + | chr5.4:50877772-50877791 | MS.gene050047:CDS | 60.0% | |
| GGAGATGCTGGAGCAGATCC+GGG | + | chr5.4:50877760-50877779 | MS.gene050047:CDS | 60.0% | |
| TCCCCGTCCGATCCATTCAC+CGG | + | chr5.4:50877658-50877677 | MS.gene050047:CDS | 60.0% | |
| TCTGCCCCTTCGTTTCCTCC+CGG | - | chr5.4:50877781-50877800 | None:intergenic | 60.0% | |
| TCTGCCTCTTCGCTTCCTCC+CGG | - | chr5.4:50880364-50880383 | None:intergenic | 60.0% | |
| TGAATGGATCGGACGGGGAG+AGG | - | chr5.4:50877657-50877676 | None:intergenic | 60.0% | |
| TGCCGGTGAATGGATCGGAC+GGG | - | chr5.4:50877663-50877682 | None:intergenic | 60.0% | |
| GATGCTGGAGCAGATCCGGG+AGG | + | chr5.4:50877763-50877782 | MS.gene050047:CDS | 65.0% | |
| GCCGGTGAATGGATCGGACG+GGG | - | chr5.4:50877662-50877681 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 50877646 | 50880549 | 50877646 | ID=MS.gene050047 |
| chr5.4 | mRNA | 50877646 | 50880549 | 50877646 | ID=MS.gene050047.t1;Parent=MS.gene050047 |
| chr5.4 | exon | 50877646 | 50877944 | 50877646 | ID=MS.gene050047.t1.exon1;Parent=MS.gene050047.t1 |
| chr5.4 | CDS | 50877646 | 50877944 | 50877646 | ID=cds.MS.gene050047.t1;Parent=MS.gene050047.t1 |
| chr5.4 | exon | 50879632 | 50879764 | 50879632 | ID=MS.gene050047.t1.exon2;Parent=MS.gene050047.t1 |
| chr5.4 | CDS | 50879632 | 50879764 | 50879632 | ID=cds.MS.gene050047.t1;Parent=MS.gene050047.t1 |
| chr5.4 | exon | 50880170 | 50880254 | 50880170 | ID=MS.gene050047.t1.exon3;Parent=MS.gene050047.t1 |
| chr5.4 | CDS | 50880170 | 50880254 | 50880170 | ID=cds.MS.gene050047.t1;Parent=MS.gene050047.t1 |
| chr5.4 | exon | 50880305 | 50880549 | 50880305 | ID=MS.gene050047.t1.exon4;Parent=MS.gene050047.t1 |
| chr5.4 | CDS | 50880305 | 50880549 | 50880305 | ID=cds.MS.gene050047.t1;Parent=MS.gene050047.t1 |
| Gene Sequence |
| Protein sequence |
