Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64121.t1 | XP_003616032.1 | 82 | 172 | 31 | 0 | 1 | 172 | 66 | 237 | 5.50E-68 | 267.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64121.t1 | O22873 | 60.8 | 186 | 50 | 4 | 3 | 172 | 48 | 226 | 4.6e-47 | 189.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64121.t1 | G7K0T5 | 82.0 | 172 | 31 | 0 | 1 | 172 | 66 | 237 | 4.0e-68 | 267.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene64121.t1 | TF | bZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050047 | MS.gene64121 | 0.961971 | 2.52E-120 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64121.t1 | MTR_5g075390 | 86.047 | 172 | 24 | 0 | 1 | 172 | 66 | 237 | 1.05e-99 | 295 |
| MS.gene64121.t1 | MTR_5g075390 | 79.487 | 78 | 16 | 0 | 172 | 249 | 90 | 167 | 7.88e-38 | 136 |
| MS.gene64121.t1 | MTR_3g467120 | 60.185 | 216 | 49 | 5 | 1 | 181 | 53 | 266 | 1.34e-73 | 229 |
| MS.gene64121.t1 | MTR_3g467120 | 41.818 | 110 | 30 | 4 | 172 | 249 | 78 | 185 | 4.09e-15 | 74.3 |
| MS.gene64121.t1 | MTR_3g094020 | 61.905 | 147 | 49 | 1 | 26 | 172 | 47 | 186 | 3.14e-50 | 167 |
| MS.gene64121.t1 | MTR_2g099050 | 48.705 | 193 | 55 | 4 | 24 | 172 | 107 | 299 | 6.05e-42 | 148 |
| MS.gene64121.t1 | MTR_6g034945 | 59.231 | 130 | 50 | 3 | 46 | 173 | 102 | 230 | 1.04e-36 | 132 |
| MS.gene64121.t1 | MTR_4g072090 | 68.367 | 98 | 31 | 0 | 79 | 176 | 345 | 442 | 6.86e-34 | 127 |
| MS.gene64121.t1 | MTR_4g072090 | 70.213 | 94 | 28 | 0 | 79 | 172 | 345 | 438 | 1.94e-33 | 127 |
| MS.gene64121.t1 | MTR_1g023690 | 56.897 | 116 | 50 | 0 | 79 | 194 | 372 | 487 | 2.47e-20 | 90.1 |
| MS.gene64121.t1 | MTR_1g099030 | 38.017 | 121 | 70 | 3 | 38 | 158 | 73 | 188 | 4.84e-13 | 67.8 |
| MS.gene64121.t1 | MTR_2g090900 | 46.250 | 80 | 43 | 0 | 93 | 172 | 190 | 269 | 8.91e-13 | 67.4 |
| MS.gene64121.t1 | MTR_2g090900 | 46.250 | 80 | 43 | 0 | 93 | 172 | 190 | 269 | 9.75e-13 | 67.4 |
| MS.gene64121.t1 | MTR_4g079500 | 45.946 | 74 | 40 | 0 | 93 | 166 | 193 | 266 | 1.74e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64121.t1 | AT2G40620 | 60.215 | 186 | 51 | 4 | 3 | 172 | 48 | 226 | 5.67e-60 | 194 |
| MS.gene64121.t1 | AT2G40620 | 42.268 | 97 | 33 | 3 | 172 | 249 | 64 | 156 | 2.15e-12 | 66.6 |
| MS.gene64121.t1 | AT1G06850 | 55.696 | 158 | 55 | 3 | 29 | 172 | 70 | 226 | 9.48e-48 | 161 |
| MS.gene64121.t1 | AT2G31370 | 50.267 | 187 | 56 | 5 | 24 | 173 | 94 | 280 | 8.75e-43 | 149 |
| MS.gene64121.t1 | AT2G31370 | 50.267 | 187 | 56 | 5 | 24 | 173 | 94 | 280 | 1.83e-42 | 149 |
| MS.gene64121.t1 | AT2G31370 | 50.267 | 187 | 56 | 5 | 24 | 173 | 94 | 280 | 1.83e-42 | 149 |
| MS.gene64121.t1 | AT2G31370 | 50.267 | 187 | 56 | 5 | 24 | 173 | 94 | 280 | 1.83e-42 | 149 |
| MS.gene64121.t1 | AT2G31370 | 50.267 | 187 | 56 | 5 | 24 | 173 | 94 | 280 | 1.83e-42 | 149 |
| MS.gene64121.t1 | AT2G31370 | 50.267 | 187 | 56 | 5 | 24 | 173 | 94 | 280 | 1.83e-42 | 149 |
| MS.gene64121.t1 | AT2G31370 | 50.267 | 187 | 56 | 5 | 24 | 173 | 94 | 280 | 1.83e-42 | 149 |
| MS.gene64121.t1 | AT1G06070 | 47.514 | 181 | 63 | 3 | 24 | 172 | 108 | 288 | 9.56e-40 | 142 |
| MS.gene64121.t1 | AT1G06850 | 51.111 | 135 | 51 | 3 | 29 | 149 | 70 | 203 | 6.69e-35 | 125 |
| MS.gene64121.t1 | AT4G38900 | 71.277 | 94 | 27 | 0 | 79 | 172 | 379 | 472 | 3.41e-33 | 126 |
| MS.gene64121.t1 | AT4G38900 | 71.277 | 94 | 27 | 0 | 79 | 172 | 379 | 472 | 3.41e-33 | 126 |
| MS.gene64121.t1 | AT1G43700 | 68.041 | 97 | 29 | 1 | 78 | 172 | 176 | 272 | 7.57e-33 | 122 |
| MS.gene64121.t1 | AT4G38900 | 67.000 | 100 | 27 | 1 | 79 | 172 | 379 | 478 | 7.45e-31 | 120 |
| MS.gene64121.t1 | AT2G21230 | 65.957 | 94 | 32 | 0 | 79 | 172 | 355 | 448 | 3.12e-30 | 117 |
| MS.gene64121.t1 | AT2G21230 | 65.957 | 94 | 32 | 0 | 79 | 172 | 355 | 448 | 6.10e-30 | 117 |
| MS.gene64121.t1 | AT2G21230 | 65.957 | 94 | 32 | 0 | 79 | 172 | 355 | 448 | 6.10e-30 | 117 |
| MS.gene64121.t1 | AT2G21230 | 65.957 | 94 | 32 | 0 | 79 | 172 | 355 | 448 | 6.61e-30 | 117 |
| MS.gene64121.t1 | AT3G58120 | 42.857 | 84 | 48 | 0 | 94 | 177 | 202 | 285 | 3.82e-13 | 68.2 |
| MS.gene64121.t1 | AT2G42380 | 45.000 | 80 | 44 | 0 | 93 | 172 | 185 | 264 | 4.72e-13 | 67.4 |
| MS.gene64121.t1 | AT2G42380 | 47.297 | 74 | 39 | 0 | 93 | 166 | 185 | 258 | 1.56e-12 | 66.6 |
| MS.gene64121.t1 | AT3G58120 | 47.945 | 73 | 38 | 0 | 94 | 166 | 202 | 274 | 1.65e-12 | 66.6 |
| MS.gene64121.t1 | AT2G12900 | 33.696 | 92 | 61 | 0 | 94 | 185 | 116 | 207 | 2.65e-11 | 62.4 |
| MS.gene64121.t1 | AT2G12940 | 34.409 | 93 | 60 | 1 | 80 | 172 | 135 | 226 | 3.23e-11 | 62.4 |
Find 70 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGACATCGGCACAATAATT+TGG | 0.242899 | 5.1:+50031880 | MS.gene64121:CDS |
| GTCATTGGGTCGAGTTTGTT+TGG | 0.270016 | 5.1:+50029317 | MS.gene64121:CDS |
| TTGTTTGGGGAGACTATAGA+TGG | 0.281473 | 5.1:+50029332 | MS.gene64121:CDS |
| GTCGTTGGGTTGAGTTCGTT+TGG | 0.295731 | 5.1:+50031902 | MS.gene64121:CDS |
| CGACATAATAATTTGGTCAT+TGG | 0.303981 | 5.1:+50029302 | MS.gene64121:CDS |
| GAGACATCGACATAATAATT+TGG | 0.326453 | 5.1:+50029295 | MS.gene64121:CDS |
| CAAAGCTCAGCCAACTTATC+AGG | 0.329404 | 5.1:-50029371 | None:intergenic |
| TCATTGGGTCGAGTTTGTTT+GGG | 0.335881 | 5.1:+50029318 | MS.gene64121:CDS |
| CAAAGCTCAGCCAACTTATC+AGG | 0.343237 | 5.1:-50031956 | None:intergenic |
| TCGTTGGGTTGAGTTCGTTT+GGG | 0.362752 | 5.1:+50031903 | MS.gene64121:CDS |
| TGGAGATGCTGGAGCAGATC+CGG | 0.379190 | 5.1:+50029235 | MS.gene64121:CDS |
| TGGAGATGCTGGAGCAGATC+CGG | 0.379190 | 5.1:+50031820 | MS.gene64121:CDS |
| CTGATAAGTTGGCTGAGCTT+TGG | 0.398977 | 5.1:+50029372 | MS.gene64121:CDS |
| CTGATAAGTTGGCTGAGCTT+TGG | 0.400539 | 5.1:+50031957 | MS.gene64121:CDS |
| TTCGCACATTTAGGATCAAC+AGG | 0.413831 | 5.1:-50029395 | None:intergenic |
| GAGTTCGTTTGGGGAGACTA+TGG | 0.418532 | 5.1:+50031913 | MS.gene64121:CDS |
| GACATAATAATTTGGTCATT+GGG | 0.421535 | 5.1:+50029303 | MS.gene64121:CDS |
| GGCACAATAATTTGGTCGTT+GGG | 0.432993 | 5.1:+50031888 | MS.gene64121:CDS |
| CGGCACAATAATTTGGTCGT+TGG | 0.438010 | 5.1:+50031887 | MS.gene64121:CDS |
| CGAAGGGGCAGAGAAGAATC+AGG | 0.454515 | 5.1:+50029265 | MS.gene64121:CDS |
| TGAATGGATCGGACGGGGAG+AGG | 0.474920 | 5.1:-50029130 | None:intergenic |
| TCTGCCCCTTCGTTTCCTCC+CGG | 0.478769 | 5.1:-50029254 | None:intergenic |
| CGAAGAGGCAGAGAAGAATC+CGG | 0.481169 | 5.1:+50031850 | MS.gene64121:CDS |
| TCTGCCTCTTCGCTTCCTCC+CGG | 0.484387 | 5.1:-50031839 | None:intergenic |
| AGCTATGTCTCCTGATAAGT+TGG | 0.488757 | 5.1:+50029361 | MS.gene64121:CDS |
| AGCTATGCCTCCTGATAAGT+TGG | 0.499388 | 5.1:+50031946 | MS.gene64121:CDS |
| ATGGACAGACTTGGAGATGC+TGG | 0.503770 | 5.1:+50029224 | MS.gene64121:CDS |
| ATGGACAGACTTGGAGATGC+TGG | 0.503770 | 5.1:+50031809 | MS.gene64121:CDS |
| TGCCCAACTGACACTATACC+AGG | 0.512274 | 5.1:+50031221 | MS.gene64121:CDS |
| GTTGATGATCTGCCGGTGAA+TGG | 0.513134 | 5.1:-50029146 | None:intergenic |
| TGCTCATTCAAAAGAGAGAA+AGG | 0.514267 | 5.1:+50031134 | MS.gene64121:CDS |
| TTGATCCTAAATGTGCGAAA+AGG | 0.514958 | 5.1:+50031984 | MS.gene64121:CDS |
| TACATTGACATGGACAGACT+TGG | 0.516336 | 5.1:+50029215 | MS.gene64121:CDS |
| TACATTGACATGGACAGACT+TGG | 0.516336 | 5.1:+50031800 | MS.gene64121:CDS |
| TCGTTTGGGGAGACTATGGA+TGG | 0.520293 | 5.1:+50031917 | MS.gene64121:CDS |
| GCAGATCCGGGAGGAAACGA+AGG | 0.527514 | 5.1:+50029248 | MS.gene64121:CDS |
| TAAGCTCCGTCCGCAAGCAA+TGG | 0.531437 | 5.1:+50031686 | MS.gene64121:CDS |
| CAGATCCGGGAGGAAACGAA+GGG | 0.534632 | 5.1:+50029249 | MS.gene64121:CDS |
| TTGATCCTAAATGTGCGAAA+AGG | 0.537313 | 5.1:+50029399 | MS.gene64121:CDS |
| GGAGATGCTGGAGCAGATCC+GGG | 0.539976 | 5.1:+50029236 | MS.gene64121:CDS |
| GGAGATGCTGGAGCAGATCC+GGG | 0.539976 | 5.1:+50031821 | MS.gene64121:CDS |
| GTTGCTCCATTGCTTGCGGA+CGG | 0.540579 | 5.1:-50031692 | None:intergenic |
| TGCCGGTGAATGGATCGGAC+GGG | 0.541814 | 5.1:-50029136 | None:intergenic |
| AACCTGGTATAGTGTCAGTT+GGG | 0.543208 | 5.1:-50031223 | None:intergenic |
| TCCCCGTCCGATCCATTCAC+CGG | 0.545509 | 5.1:+50029134 | MS.gene64121:CDS |
| GCCGGTGAATGGATCGGACG+GGG | 0.546664 | 5.1:-50029135 | None:intergenic |
| TGTTTGGGGAGACTATAGAT+GGG | 0.548419 | 5.1:+50029333 | MS.gene64121:CDS |
| GAGTTGTAGCATCAGTCTGT+AGG | 0.551575 | 5.1:-50031194 | None:intergenic |
| CTGCCGGTGAATGGATCGGA+CGG | 0.557304 | 5.1:-50029137 | None:intergenic |
| AAACCTGGTATAGTGTCAGT+TGG | 0.558403 | 5.1:-50031224 | None:intergenic |
| AGTTGTAGCATCAGTCTGTA+GGG | 0.565606 | 5.1:-50031193 | None:intergenic |
| GCTAGCAGTTGATGATCTGC+CGG | 0.567306 | 5.1:-50029153 | None:intergenic |
| TGCCGATGTCTCAACCTCAC+CGG | 0.569694 | 5.1:-50031869 | None:intergenic |
| CGTTGGGTTGAGTTCGTTTG+GGG | 0.570030 | 5.1:+50031904 | MS.gene64121:CDS |
| CAACAAACACATCTTCATGA+TGG | 0.580671 | 5.1:+50031711 | MS.gene64121:CDS |
| ACTGCTAGCCTCGATGAGAT+CGG | 0.580821 | 5.1:+50029167 | MS.gene64121:CDS |
| TTTCGCACATTTAGGATCAA+CGG | 0.584714 | 5.1:-50031981 | None:intergenic |
| CATTGGGTCGAGTTTGTTTG+GGG | 0.585199 | 5.1:+50029319 | MS.gene64121:CDS |
| TGATCTGCCGGTGAATGGAT+CGG | 0.590158 | 5.1:-50029141 | None:intergenic |
| ATCCGGTGAGGTTGAGACAT+CGG | 0.592715 | 5.1:+50031867 | MS.gene64121:CDS |
| GTTTGTTGCTCCATTGCTTG+CGG | 0.611180 | 5.1:-50031696 | None:intergenic |
| AGCTCAGCCAACTTATCAGG+AGG | 0.632846 | 5.1:-50031953 | None:intergenic |
| AGATCCGGGAGGAAGCGAAG+AGG | 0.647845 | 5.1:+50031835 | MS.gene64121:CDS |
| CGTTTGGGGAGACTATGGAT+GGG | 0.670001 | 5.1:+50031918 | MS.gene64121:CDS |
| GGGCAGAGAAGAATCAGGTG+AGG | 0.681356 | 5.1:+50029270 | MS.gene64121:CDS |
| AGGCAGAGAAGAATCCGGTG+AGG | 0.692593 | 5.1:+50031855 | MS.gene64121:CDS |
| CTTCGGATCCGATCTCATCG+AGG | 0.697774 | 5.1:-50029175 | None:intergenic |
| GATGCTGGAGCAGATCCGGG+AGG | 0.709228 | 5.1:+50029239 | MS.gene64121:CDS |
| GATGCTGGAGCAGATCCGGG+AGG | 0.709228 | 5.1:+50031824 | MS.gene64121:CDS |
| AGATCCGGGAGGAAACGAAG+GGG | 0.720038 | 5.1:+50029250 | MS.gene64121:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGGTAAAATAAATTAATA+AGG | + | chr5.1:50029583-50029602 | MS.gene64121:intron | 10.0% |
| !!! | TTGAAATTTTTTAATAGTTT+GGG | + | chr5.1:50030355-50030374 | MS.gene64121:intron | 10.0% |
| !! | TTATACAAAAAGATTCTTAA+TGG | - | chr5.1:50030707-50030726 | None:intergenic | 15.0% |
| !!! | ATTAGTTAATTTTTCAATGA+TGG | + | chr5.1:50029469-50029488 | MS.gene64121:intron | 15.0% |
| !!! | GTTGAAATTTTTTAATAGTT+TGG | + | chr5.1:50030354-50030373 | MS.gene64121:intron | 15.0% |
| !!! | TCATATTTTTTAGCTATAAA+TGG | - | chr5.1:50031400-50031419 | None:intergenic | 15.0% |
| !!! | TCTAGAACATTTTATATAAA+AGG | - | chr5.1:50031461-50031480 | None:intergenic | 15.0% |
| !!! | TGATTTTCTTTTATTAGTTT+AGG | + | chr5.1:50029540-50029559 | MS.gene64121:intron | 15.0% |
| !!! | TTAGTTAATTTTTCAATGAT+GGG | + | chr5.1:50029470-50029489 | MS.gene64121:intron | 15.0% |
| !!! | TTTTTTTTTATATAGTGATG+AGG | + | chr5.1:50030618-50030637 | MS.gene64121:intron | 15.0% |
| !! | AATTTATGATTAGAGATTAG+AGG | + | chr5.1:50030681-50030700 | MS.gene64121:intron | 20.0% |
| !! | ATCTTTAACATATTGTAAGA+AGG | - | chr5.1:50031749-50031768 | None:intergenic | 20.0% |
| !! | TCTTTAACATATTGTAAGAA+GGG | - | chr5.1:50031748-50031767 | None:intergenic | 20.0% |
| !!! | AACCAAGAAAAAACATTTTT+AGG | + | chr5.1:50030150-50030169 | MS.gene64121:intron | 20.0% |
| !!! | AAGAAAAAACATTTTTAGGT+AGG | + | chr5.1:50030154-50030173 | MS.gene64121:intron | 20.0% |
| !!! | ACTAGCTTATAAATATGATA+TGG | + | chr5.1:50029710-50029729 | MS.gene64121:intron | 20.0% |
| !!! | AGAAAAAACATTTTTAGGTA+GGG | + | chr5.1:50030155-50030174 | MS.gene64121:intron | 20.0% |
| !!! | CTTCTTAGATTTAAACTTTT+GGG | + | chr5.1:50030957-50030976 | MS.gene64121:intron | 20.0% |
| !!! | TACCTAAAAATGTTTTTTCT+TGG | - | chr5.1:50030155-50030174 | None:intergenic | 20.0% |
| !!! | TAGCTAAAAAATATGACTTT+TGG | + | chr5.1:50031404-50031423 | MS.gene64121:intron | 20.0% |
| !!! | TATGTTGAGTTTTTGTTAAT+TGG | + | chr5.1:50029501-50029520 | MS.gene64121:intron | 20.0% |
| !!! | TTCTTAGATTTAAACTTTTG+GGG | + | chr5.1:50030958-50030977 | MS.gene64121:intron | 20.0% |
| !!! | TTGTTTTGATAATTTTTGTG+TGG | + | chr5.1:50030447-50030466 | MS.gene64121:intron | 20.0% |
| ! | AATAACTGATAAGCTTATAG+CGG | + | chr5.1:50029606-50029625 | MS.gene64121:intron | 25.0% |
| ! | ATAAATGGAACAAGGATATA+TGG | - | chr5.1:50031385-50031404 | None:intergenic | 25.0% |
| ! | CGATTCCAATTATAAACAAA+AGG | + | chr5.1:50030111-50030130 | MS.gene64121:intron | 25.0% |
| ! | CGTTAAAAAATTCAGCAATT+GGG | - | chr5.1:50030282-50030301 | None:intergenic | 25.0% |
| ! | CTTTAACATATTGTAAGAAG+GGG | - | chr5.1:50031747-50031766 | None:intergenic | 25.0% |
| ! | GACATAATAATTTGGTCATT+GGG | + | chr5.1:50029303-50029322 | MS.gene64121:CDS | 25.0% |
| ! | TACTGTACATTTAATCACTT+TGG | + | chr5.1:50031485-50031504 | MS.gene64121:intron | 25.0% |
| ! | TCGTTAAAAAATTCAGCAAT+TGG | - | chr5.1:50030283-50030302 | None:intergenic | 25.0% |
| ! | TGCTAGATTTAAACAAATGA+GGG | - | chr5.1:50030032-50030051 | None:intergenic | 25.0% |
| ! | TGTTTATAATTGGAATCGAT+TGG | - | chr5.1:50030109-50030128 | None:intergenic | 25.0% |
| ! | TGTTTGTGAATAATTCATCA+TGG | + | chr5.1:50031544-50031563 | MS.gene64121:intron | 25.0% |
| ! | TTGCTAGATTTAAACAAATG+AGG | - | chr5.1:50030033-50030052 | None:intergenic | 25.0% |
| !! | AGTTTAGGCAATTTAAAACA+AGG | + | chr5.1:50029555-50029574 | MS.gene64121:intron | 25.0% |
| !! | ATTTAATCACTTTGGTGATT+TGG | + | chr5.1:50031493-50031512 | MS.gene64121:intron | 25.0% |
| !! | ATTTCCAAGACCAATTTTAA+AGG | - | chr5.1:50030080-50030099 | None:intergenic | 25.0% |
| !! | GCTTCTTAGATTTAAACTTT+TGG | + | chr5.1:50030956-50030975 | MS.gene64121:intron | 25.0% |
| !! | TCTTAGATTTAAACTTTTGG+GGG | + | chr5.1:50030959-50030978 | MS.gene64121:intron | 25.0% |
| !! | TTTAATCACTTTGGTGATTT+GGG | + | chr5.1:50031494-50031513 | MS.gene64121:intron | 25.0% |
| !! | TTTCCAAGACCAATTTTAAA+GGG | - | chr5.1:50030079-50030098 | None:intergenic | 25.0% |
| !!! | AAGCTCCTTTTGTTTATAAT+TGG | - | chr5.1:50030119-50030138 | None:intergenic | 25.0% |
| !!! | AGTAACTCTGTTTTGTTTAT+TGG | + | chr5.1:50031300-50031319 | MS.gene64121:intron | 25.0% |
| !!! | TTTTAGCTATAAATGGAACA+AGG | - | chr5.1:50031393-50031412 | None:intergenic | 25.0% |
| AAGCTCAAATACGTCAAATA+TGG | + | chr5.1:50030769-50030788 | MS.gene64121:intron | 30.0% | |
| AAGTTTAAATCTAAGAAGCC+CGG | - | chr5.1:50030955-50030974 | None:intergenic | 30.0% | |
| ACTCATCTCAATTATTTGAC+TGG | + | chr5.1:50030487-50030506 | MS.gene64121:intron | 30.0% | |
| CACTCTCATACTTAAATTTG+TGG | + | chr5.1:50031581-50031600 | MS.gene64121:intron | 30.0% | |
| CGACATAATAATTTGGTCAT+TGG | + | chr5.1:50029302-50029321 | MS.gene64121:CDS | 30.0% | |
| CGTCAAATATGGAAAAACAT+TGG | + | chr5.1:50030780-50030799 | MS.gene64121:intron | 30.0% | |
| CTCATCTCAATTATTTGACT+GGG | + | chr5.1:50030488-50030507 | MS.gene64121:intron | 30.0% | |
| GAGACATCGACATAATAATT+TGG | + | chr5.1:50029295-50029314 | MS.gene64121:CDS | 30.0% | |
| GTAAGTTCTATGAGTAATTG+CGG | + | chr5.1:50030561-50030580 | MS.gene64121:intron | 30.0% | |
| TCCATATTGTTCTATGTATC+CGG | + | chr5.1:50030933-50030952 | MS.gene64121:intron | 30.0% | |
| ! | AAAAACATTGGTGTTTGACA+TGG | + | chr5.1:50030792-50030811 | MS.gene64121:intron | 30.0% |
| ! | ACAATCTAGAATCACATAAG+AGG | - | chr5.1:50030543-50030562 | None:intergenic | 30.0% |
| ! | ATTTAAAACAAGGCTCTGTT+TGG | + | chr5.1:50029565-50029584 | MS.gene64121:intron | 30.0% |
| ! | CAATCTAGAATCACATAAGA+GGG | - | chr5.1:50030542-50030561 | None:intergenic | 30.0% |
| ! | CTAATTGATTTAGCACAACT+CGG | - | chr5.1:50029916-50029935 | None:intergenic | 30.0% |
| !! | AATTTTAAAGGGGTGATATG+AGG | - | chr5.1:50030068-50030087 | None:intergenic | 30.0% |
| !! | ATTTTAAAGGGGTGATATGA+GGG | - | chr5.1:50030067-50030086 | None:intergenic | 30.0% |
| !! | TCATATCACCCCTTTAAAAT+TGG | + | chr5.1:50030067-50030086 | MS.gene64121:intron | 30.0% |
| !! | TTCCAAGACCAATTTTAAAG+GGG | - | chr5.1:50030078-50030097 | None:intergenic | 30.0% |
| !!! | GGTCTTTTTTAAGTCAAATG+AGG | + | chr5.1:50029799-50029818 | MS.gene64121:intron | 30.0% |
| !!! | TTATTTTAGAGAGACACAAC+AGG | + | chr5.1:50031639-50031658 | MS.gene64121:intron | 30.0% |
| ATTATTTGACTGGGATGAGT+TGG | + | chr5.1:50030497-50030516 | MS.gene64121:intron | 35.0% | |
| CAACAAACACATCTTCATGA+TGG | + | chr5.1:50031711-50031730 | MS.gene64121:CDS | 35.0% | |
| CCATATTGTTCTATGTATCC+GGG | + | chr5.1:50030934-50030953 | MS.gene64121:intron | 35.0% | |
| CGTCAAAAACAAGTCATCTT+CGG | - | chr5.1:50029195-50029214 | None:intergenic | 35.0% | |
| GATAAATGTCAACACAAACC+TGG | - | chr5.1:50031242-50031261 | None:intergenic | 35.0% | |
| TGACTTAAAAAAGACCCGTT+TGG | - | chr5.1:50029795-50029814 | None:intergenic | 35.0% | |
| TGCTCATTCAAAAGAGAGAA+AGG | + | chr5.1:50031134-50031153 | MS.gene64121:CDS | 35.0% | |
| TTGATCCTAAATGTGCGAAA+AGG | + | chr5.1:50029399-50029418 | MS.gene64121:CDS | 35.0% | |
| TTGTTGTGTGTTCAATCTGT+CGG | + | chr5.1:50029881-50029900 | MS.gene64121:intron | 35.0% | |
| ! | ACAAACCTTTTCGCACATTT+AGG | - | chr5.1:50031992-50032011 | None:intergenic | 35.0% |
| ! | ACACATTTGTTAGCGTATCT+TGG | + | chr5.1:50030859-50030878 | MS.gene64121:intron | 35.0% |
| ! | GTTTTTGACGTACATTGACA+TGG | + | chr5.1:50029205-50029224 | MS.gene64121:CDS | 35.0% |
| ! | TTTCGCACATTTAGGATCAA+CGG | - | chr5.1:50029399-50029418 | None:intergenic | 35.0% |
| !! | AAGTTTGTTGTGTGTGATTG+TGG | + | chr5.1:50030405-50030424 | MS.gene64121:intron | 35.0% |
| !! | TAGATTTAAACTTTTGGGGG+TGG | + | chr5.1:50030962-50030981 | MS.gene64121:intron | 35.0% |
| !!! | ACATTTTTAGGTAGGGAACT+AGG | + | chr5.1:50030162-50030181 | MS.gene64121:intron | 35.0% |
| AAACCTGGTATAGTGTCAGT+TGG | - | chr5.1:50031227-50031246 | None:intergenic | 40.0% | |
| AACCTGGTATAGTGTCAGTT+GGG | - | chr5.1:50031226-50031245 | None:intergenic | 40.0% | |
| AGAACGTCACAGTTACCAAA+CGG | + | chr5.1:50029777-50029796 | MS.gene64121:intron | 40.0% | |
| AGCCAGATACACGACAAAAT+AGG | - | chr5.1:50030235-50030254 | None:intergenic | 40.0% | |
| AGCTATGTCTCCTGATAAGT+TGG | + | chr5.1:50029361-50029380 | MS.gene64121:CDS | 40.0% | |
| AGTTGTAGCATCAGTCTGTA+GGG | - | chr5.1:50031196-50031215 | None:intergenic | 40.0% | |
| CCAGATACACGACAAAATAG+GGG | - | chr5.1:50030233-50030252 | None:intergenic | 40.0% | |
| CCCGGATACATAGAACAATA+TGG | - | chr5.1:50030937-50030956 | None:intergenic | 40.0% | |
| CTAGAATCACATAAGAGGGT+TGG | - | chr5.1:50030538-50030557 | None:intergenic | 40.0% | |
| GAACAAGGATATATGGCTCA+AGG | - | chr5.1:50031378-50031397 | None:intergenic | 40.0% | |
| GAGACATCGGCACAATAATT+TGG | + | chr5.1:50031880-50031899 | MS.gene64121:CDS | 40.0% | |
| GCCAGATACACGACAAAATA+GGG | - | chr5.1:50030234-50030253 | None:intergenic | 40.0% | |
| GGCAACTAGTTCAAGATGAA+GGG | - | chr5.1:50030212-50030231 | None:intergenic | 40.0% | |
| GGCACAATAATTTGGTCGTT+GGG | + | chr5.1:50031888-50031907 | MS.gene64121:CDS | 40.0% | |
| GTATCTGGCTATGTGTTCAA+TGG | + | chr5.1:50030245-50030264 | MS.gene64121:intron | 40.0% | |
| GTTTACTCACACTGCAGAAA+CGG | - | chr5.1:50030003-50030022 | None:intergenic | 40.0% | |
| TACATTGACATGGACAGACT+TGG | + | chr5.1:50029215-50029234 | MS.gene64121:CDS | 40.0% | |
| TGTTTGGGGAGACTATAGAT+GGG | + | chr5.1:50029333-50029352 | MS.gene64121:CDS | 40.0% | |
| TTGTTTGGGGAGACTATAGA+TGG | + | chr5.1:50029332-50029351 | MS.gene64121:CDS | 40.0% | |
| ! | AACTCCACTAACAGCCATTT+TGG | + | chr5.1:50029972-50029991 | MS.gene64121:intron | 40.0% |
| ! | ACGAACCTTTTCGCACATTT+AGG | - | chr5.1:50029407-50029426 | None:intergenic | 40.0% |
| ! | TCATTGGGTCGAGTTTGTTT+GGG | + | chr5.1:50029318-50029337 | MS.gene64121:CDS | 40.0% |
| ! | TTCGCACATTTAGGATCAAC+AGG | - | chr5.1:50029398-50029417 | None:intergenic | 40.0% |
| !! | ATTTAAACTTTTGGGGGTGG+AGG | + | chr5.1:50030965-50030984 | MS.gene64121:intron | 40.0% |
| !! | CACCCCTTTAAAATTGGTCT+TGG | + | chr5.1:50030073-50030092 | MS.gene64121:intron | 40.0% |
| AGCTATGCCTCCTGATAAGT+TGG | + | chr5.1:50031946-50031965 | MS.gene64121:CDS | 45.0% | |
| CAAAGCTCAGCCAACTTATC+AGG | - | chr5.1:50029374-50029393 | None:intergenic | 45.0% | |
| CGGCACAATAATTTGGTCGT+TGG | + | chr5.1:50031887-50031906 | MS.gene64121:CDS | 45.0% | |
| GAACGTCACAGTTACCAAAC+GGG | + | chr5.1:50029778-50029797 | MS.gene64121:intron | 45.0% | |
| GAGTTGTAGCATCAGTCTGT+AGG | - | chr5.1:50031197-50031216 | None:intergenic | 45.0% | |
| GGGCAACTAGTTCAAGATGA+AGG | - | chr5.1:50030213-50030232 | None:intergenic | 45.0% | |
| GTGGAGGATAAAGTGAGAGA+GGG | + | chr5.1:50030981-50031000 | MS.gene64121:intron | 45.0% | |
| TGGAGGATAAAGTGAGAGAG+GGG | + | chr5.1:50030982-50031001 | MS.gene64121:intron | 45.0% | |
| TTTAGCACAACTCGGAGAGA+AGG | - | chr5.1:50029908-50029927 | None:intergenic | 45.0% | |
| ! | CATTGGGTCGAGTTTGTTTG+GGG | + | chr5.1:50029319-50029338 | MS.gene64121:CDS | 45.0% |
| ! | CCCCTATTTTGTCGTGTATC+TGG | + | chr5.1:50030230-50030249 | MS.gene64121:intron | 45.0% |
| ! | CTGATAAGTTGGCTGAGCTT+TGG | + | chr5.1:50029372-50029391 | MS.gene64121:CDS | 45.0% |
| ! | GTCATTGGGTCGAGTTTGTT+TGG | + | chr5.1:50029317-50029336 | MS.gene64121:CDS | 45.0% |
| ! | GTTTGTTGCTCCATTGCTTG+CGG | - | chr5.1:50031699-50031718 | None:intergenic | 45.0% |
| !! | TCGTTGGGTTGAGTTCGTTT+GGG | + | chr5.1:50031903-50031922 | MS.gene64121:CDS | 45.0% |
| AGCTCAGCCAACTTATCAGG+AGG | - | chr5.1:50029371-50029390 | None:intergenic | 50.0% | |
| ATCCGGTGAGGTTGAGACAT+CGG | + | chr5.1:50031867-50031886 | MS.gene64121:CDS | 50.0% | |
| ATGGACAGACTTGGAGATGC+TGG | + | chr5.1:50029224-50029243 | MS.gene64121:CDS | 50.0% | |
| CAGAAACGGAGTGGCCAAAA+TGG | - | chr5.1:50029989-50030008 | None:intergenic | 50.0% | |
| CGAAGAGGCAGAGAAGAATC+CGG | + | chr5.1:50031850-50031869 | MS.gene64121:CDS | 50.0% | |
| CGTTTGGGGAGACTATGGAT+GGG | + | chr5.1:50031918-50031937 | MS.gene64121:CDS | 50.0% | |
| GAGTTCGTTTGGGGAGACTA+TGG | + | chr5.1:50031913-50031932 | MS.gene64121:CDS | 50.0% | |
| GGTGGAGGATAAAGTGAGAG+AGG | + | chr5.1:50030980-50030999 | MS.gene64121:intron | 50.0% | |
| GTGGCCAAAATGGCTGTTAG+TGG | - | chr5.1:50029979-50029998 | None:intergenic | 50.0% | |
| TCGTTTGGGGAGACTATGGA+TGG | + | chr5.1:50031917-50031936 | MS.gene64121:CDS | 50.0% | |
| TGATCTGCCGGTGAATGGAT+CGG | - | chr5.1:50029144-50029163 | None:intergenic | 50.0% | |
| TGCCCAACTGACACTATACC+AGG | + | chr5.1:50031221-50031240 | MS.gene64121:CDS | 50.0% | |
| ! | ACTGCTAGCCTCGATGAGAT+CGG | + | chr5.1:50029167-50029186 | MS.gene64121:CDS | 50.0% |
| !! | CGTTGGGTTGAGTTCGTTTG+GGG | + | chr5.1:50031904-50031923 | MS.gene64121:CDS | 50.0% |
| !! | GCTAGCAGTTGATGATCTGC+CGG | - | chr5.1:50029156-50029175 | None:intergenic | 50.0% |
| !! | GTCGTTGGGTTGAGTTCGTT+TGG | + | chr5.1:50031902-50031921 | MS.gene64121:CDS | 50.0% |
| !! | GTTGATGATCTGCCGGTGAA+TGG | - | chr5.1:50029149-50029168 | None:intergenic | 50.0% |
| AGATCCGGGAGGAAACGAAG+GGG | + | chr5.1:50029250-50029269 | MS.gene64121:CDS | 55.0% | |
| AGGCAGAGAAGAATCCGGTG+AGG | + | chr5.1:50031855-50031874 | MS.gene64121:CDS | 55.0% | |
| CAGATCCGGGAGGAAACGAA+GGG | + | chr5.1:50029249-50029268 | MS.gene64121:CDS | 55.0% | |
| CGAAGGGGCAGAGAAGAATC+AGG | + | chr5.1:50029265-50029284 | MS.gene64121:CDS | 55.0% | |
| CTCACACTGCAGAAACGGAG+TGG | - | chr5.1:50029998-50030017 | None:intergenic | 55.0% | |
| CTTCGGATCCGATCTCATCG+AGG | - | chr5.1:50029178-50029197 | None:intergenic | 55.0% | |
| GGGCAGAGAAGAATCAGGTG+AGG | + | chr5.1:50029270-50029289 | MS.gene64121:CDS | 55.0% | |
| GTTGCTCCATTGCTTGCGGA+CGG | - | chr5.1:50031695-50031714 | None:intergenic | 55.0% | |
| TAAGCTCCGTCCGCAAGCAA+TGG | + | chr5.1:50031686-50031705 | MS.gene64121:CDS | 55.0% | |
| TGCCGATGTCTCAACCTCAC+CGG | - | chr5.1:50031872-50031891 | None:intergenic | 55.0% | |
| TGGAGATGCTGGAGCAGATC+CGG | + | chr5.1:50029235-50029254 | MS.gene64121:CDS | 55.0% | |
| AGATCCGGGAGGAAGCGAAG+AGG | + | chr5.1:50031835-50031854 | MS.gene64121:CDS | 60.0% | |
| CTGCCGGTGAATGGATCGGA+CGG | - | chr5.1:50029140-50029159 | None:intergenic | 60.0% | |
| GCAGATCCGGGAGGAAACGA+AGG | + | chr5.1:50029248-50029267 | MS.gene64121:CDS | 60.0% | |
| GGAGATGCTGGAGCAGATCC+GGG | + | chr5.1:50029236-50029255 | MS.gene64121:CDS | 60.0% | |
| TCCCCGTCCGATCCATTCAC+CGG | + | chr5.1:50029134-50029153 | MS.gene64121:CDS | 60.0% | |
| TCTGCCCCTTCGTTTCCTCC+CGG | - | chr5.1:50029257-50029276 | None:intergenic | 60.0% | |
| TCTGCCTCTTCGCTTCCTCC+CGG | - | chr5.1:50031842-50031861 | None:intergenic | 60.0% | |
| TGAATGGATCGGACGGGGAG+AGG | - | chr5.1:50029133-50029152 | None:intergenic | 60.0% | |
| TGCCGGTGAATGGATCGGAC+GGG | - | chr5.1:50029139-50029158 | None:intergenic | 60.0% | |
| GATGCTGGAGCAGATCCGGG+AGG | + | chr5.1:50029239-50029258 | MS.gene64121:CDS | 65.0% | |
| GCCGGTGAATGGATCGGACG+GGG | - | chr5.1:50029138-50029157 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 50029122 | 50032027 | 50029122 | ID=MS.gene64121 |
| chr5.1 | mRNA | 50029122 | 50032027 | 50029122 | ID=MS.gene64121.t1;Parent=MS.gene64121 |
| chr5.1 | exon | 50029122 | 50029420 | 50029122 | ID=MS.gene64121.t1.exon1;Parent=MS.gene64121.t1 |
| chr5.1 | CDS | 50029122 | 50029420 | 50029122 | ID=cds.MS.gene64121.t1;Parent=MS.gene64121.t1 |
| chr5.1 | exon | 50031110 | 50031242 | 50031110 | ID=MS.gene64121.t1.exon2;Parent=MS.gene64121.t1 |
| chr5.1 | CDS | 50031110 | 50031242 | 50031110 | ID=cds.MS.gene64121.t1;Parent=MS.gene64121.t1 |
| chr5.1 | exon | 50031648 | 50031732 | 50031648 | ID=MS.gene64121.t1.exon3;Parent=MS.gene64121.t1 |
| chr5.1 | CDS | 50031648 | 50031732 | 50031648 | ID=cds.MS.gene64121.t1;Parent=MS.gene64121.t1 |
| chr5.1 | exon | 50031783 | 50032027 | 50031783 | ID=MS.gene64121.t1.exon4;Parent=MS.gene64121.t1 |
| chr5.1 | CDS | 50031783 | 50032027 | 50031783 | ID=cds.MS.gene64121.t1;Parent=MS.gene64121.t1 |
| Gene Sequence |
| Protein sequence |
