AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05012

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05012.t1 MTR_3g064840 97.196 428 4 4 1 424 1 424 0.0 830
MS.gene05012.t1 MTR_8g066310 59.333 150 42 4 258 396 157 298 3.29e-49 171
MS.gene05012.t1 MTR_5g029470 62.821 156 40 5 256 401 201 348 2.32e-48 170
MS.gene05012.t1 MTR_6g071625 43.446 267 99 9 141 403 101 319 2.20e-45 161
MS.gene05012.t1 MTR_1g021520 58.268 127 49 1 268 394 120 242 3.48e-39 142
MS.gene05012.t1 MTR_7g069660 64.179 67 23 1 267 333 65 130 2.49e-21 95.1
MS.gene05012.t1 MTR_0223s0040 65.517 58 20 0 273 330 17 74 1.41e-20 91.7
MS.gene05012.t1 MTR_1g112370 63.793 58 21 0 273 330 21 78 5.01e-20 90.9
MS.gene05012.t1 MTR_2g084230 65.574 61 21 0 273 333 96 156 9.53e-20 89.7
MS.gene05012.t1 MTR_2g023580 67.241 58 19 0 273 330 54 111 1.29e-19 87.8
MS.gene05012.t1 MTR_1g080330 43.860 114 48 3 254 353 143 254 1.37e-19 89.0
MS.gene05012.t1 MTR_2g084230 68.966 58 18 0 273 330 96 153 1.61e-19 90.1
MS.gene05012.t1 MTR_1g080330 43.860 114 48 3 254 353 143 254 2.41e-19 89.7
MS.gene05012.t1 MTR_8g086410 67.241 58 19 0 273 330 110 167 6.25e-19 89.0
MS.gene05012.t1 MTR_8g086410 67.241 58 19 0 273 330 108 165 6.29e-19 88.6
MS.gene05012.t1 MTR_7g093030 48.837 86 41 2 276 360 214 297 2.90e-18 86.3
MS.gene05012.t1 MTR_7g093030 51.250 80 36 2 276 354 214 291 3.57e-18 84.7
MS.gene05012.t1 MTR_7g098250 50.000 86 43 0 275 360 263 348 4.37e-18 86.7
MS.gene05012.t1 MTR_2g016220 62.295 61 23 0 273 333 88 148 1.05e-17 84.7
MS.gene05012.t1 MTR_2g016220 62.295 61 23 0 273 333 88 148 1.13e-17 84.7
MS.gene05012.t1 MTR_8g086410 64.286 56 20 0 273 328 110 165 4.71e-17 83.2
MS.gene05012.t1 MTR_7g115530 54.930 71 30 1 275 345 219 287 6.17e-17 82.0
MS.gene05012.t1 MTR_3g450310 58.929 56 23 0 275 330 20 75 1.06e-16 79.0
MS.gene05012.t1 MTR_7g115530 64.286 56 20 0 275 330 219 274 1.07e-16 80.9
MS.gene05012.t1 MTR_7g115530 64.286 56 20 0 275 330 219 274 2.16e-16 80.1
MS.gene05012.t1 MTR_5g027440 67.925 53 17 0 275 327 26 78 2.41e-16 79.3
MS.gene05012.t1 MTR_1g053835 57.377 61 26 0 276 336 260 320 2.71e-16 80.9
MS.gene05012.t1 MTR_7g115530 64.286 56 20 0 275 330 219 274 2.79e-16 80.9
MS.gene05012.t1 MTR_2g016220 58.462 65 23 1 273 333 88 152 8.71e-16 79.0
MS.gene05012.t1 MTR_2g027800 54.286 70 31 1 275 344 40 108 1.21e-15 77.8
MS.gene05012.t1 MTR_1g090670 54.930 71 31 1 275 345 45 114 1.22e-15 77.4
MS.gene05012.t1 MTR_7g088070 63.636 55 20 0 276 330 52 106 1.51e-15 77.0
MS.gene05012.t1 MTR_7g088070 63.636 55 20 0 276 330 52 106 1.57e-15 77.0
MS.gene05012.t1 MTR_2g027860 63.636 55 20 0 276 330 51 105 4.46e-15 76.3
MS.gene05012.t1 MTR_6g444980 51.429 70 34 0 275 344 36 105 4.61e-15 76.6
MS.gene05012.t1 MTR_6g444980 51.429 70 34 0 275 344 36 105 5.70e-15 76.3
MS.gene05012.t1 MTR_2g086450 58.929 56 23 0 275 330 46 101 8.23e-15 75.9
MS.gene05012.t1 MTR_2g027800 62.264 53 20 0 275 327 40 92 2.00e-14 73.9
MS.gene05012.t1 MTR_7g115530 60.000 55 22 0 275 329 219 273 2.19e-14 73.9
MS.gene05012.t1 MTR_7g115530 66.000 50 17 0 275 324 219 268 3.10e-14 73.2
MS.gene05012.t1 MTR_6g032990 54.237 59 27 0 275 333 43 101 3.99e-14 73.9
MS.gene05012.t1 MTR_5g041350 52.632 57 27 0 275 331 16 72 5.47e-14 73.2
MS.gene05012.t1 MTR_4g081710 54.386 57 26 0 275 331 18 74 1.49e-13 71.6
MS.gene05012.t1 MTR_1g053830 49.180 61 31 0 276 336 20 80 3.62e-13 65.9
MS.gene05012.t1 MTR_1g053800 37.615 109 52 3 276 368 179 287 7.54e-13 69.3
MS.gene05012.t1 MTR_7g068600 43.373 83 44 1 276 355 15 97 2.00e-12 67.0
MS.gene05012.t1 MTR_4g113140 48.529 68 35 0 273 340 234 301 1.42e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05012.t1 AT5G16560 41.882 425 150 15 1 405 1 348 3.14e-72 233
MS.gene05012.t1 AT1G32240 57.225 173 48 5 224 390 174 326 4.56e-50 174
MS.gene05012.t1 AT1G32240 57.225 173 48 5 224 390 174 326 9.47e-50 173
MS.gene05012.t1 AT4G17695 55.639 133 48 2 264 388 154 283 1.68e-38 142
MS.gene05012.t1 AT5G42630 72.727 88 24 0 269 356 100 187 1.18e-36 134
MS.gene05012.t1 AT5G42630 72.727 88 24 0 269 356 100 187 4.30e-36 134
MS.gene05012.t1 AT2G38300 38.255 149 79 4 273 418 53 191 4.65e-21 94.0
MS.gene05012.t1 AT4G04605 67.241 58 19 0 273 330 13 70 2.95e-20 89.4
MS.gene05012.t1 AT2G02060 65.625 64 20 1 274 335 29 92 7.49e-20 89.0
MS.gene05012.t1 AT2G02060 65.625 64 20 1 274 335 29 92 7.49e-20 89.0
MS.gene05012.t1 AT1G14600 66.102 59 20 0 274 332 23 81 1.50e-19 88.2
MS.gene05012.t1 AT2G40260 35.519 183 89 5 236 416 62 217 3.86e-19 89.4
MS.gene05012.t1 AT4G04580 59.322 59 24 0 275 333 15 73 2.50e-18 82.4
MS.gene05012.t1 AT2G42660 66.071 56 19 0 275 330 51 106 1.04e-17 82.8
MS.gene05012.t1 AT5G45580 54.430 79 26 2 249 327 8 76 1.47e-17 82.8
MS.gene05012.t1 AT4G04555 58.621 58 24 0 273 330 13 70 2.12e-17 77.8
MS.gene05012.t1 AT5G45580 67.925 53 17 0 275 327 8 60 3.27e-17 81.6
MS.gene05012.t1 AT4G28610 58.730 63 26 0 276 338 227 289 4.73e-16 80.1
MS.gene05012.t1 AT2G01060 63.636 55 20 0 276 330 17 71 2.49e-15 76.6
MS.gene05012.t1 AT3G12730 60.714 56 22 0 275 330 24 79 2.65e-15 75.5
MS.gene05012.t1 AT1G32240 54.651 86 28 3 309 390 1 79 3.02e-15 72.8
MS.gene05012.t1 AT3G04450 55.714 70 30 1 262 330 225 294 4.51e-15 76.3
MS.gene05012.t1 AT5G29000 55.385 65 29 0 276 340 233 297 5.91e-15 75.9
MS.gene05012.t1 AT4G13640 62.264 53 20 0 275 327 38 90 6.27e-15 75.5
MS.gene05012.t1 AT4G13640 62.264 53 20 0 275 327 38 90 6.41e-15 75.5
MS.gene05012.t1 AT1G79430 50.704 71 35 0 275 345 35 105 7.75e-15 75.9
MS.gene05012.t1 AT5G29000 63.636 55 20 0 276 330 190 244 8.57e-15 75.9
MS.gene05012.t1 AT5G29000 63.636 55 20 0 276 330 190 244 8.57e-15 75.9
MS.gene05012.t1 AT3G24120 55.000 60 27 0 275 334 42 101 1.01e-14 74.7
MS.gene05012.t1 AT3G04450 55.714 70 30 1 262 330 225 294 1.03e-14 76.3
MS.gene05012.t1 AT3G24120 55.000 60 27 0 275 334 42 101 1.04e-14 74.7
MS.gene05012.t1 AT5G18240 52.308 65 31 0 275 339 46 110 1.06e-14 75.9
MS.gene05012.t1 AT5G18240 52.308 65 31 0 275 339 46 110 1.06e-14 75.9
MS.gene05012.t1 AT3G04450 55.714 70 30 1 262 330 185 254 1.07e-14 75.9
MS.gene05012.t1 AT3G04450 55.714 70 30 1 262 330 185 254 1.07e-14 75.9
MS.gene05012.t1 AT5G29000 63.636 55 20 0 276 330 233 287 1.13e-14 75.9
MS.gene05012.t1 AT5G18240 52.308 65 31 0 275 339 46 110 1.17e-14 75.9
MS.gene05012.t1 AT5G06800 56.364 55 24 0 276 330 194 248 1.20e-14 74.3
MS.gene05012.t1 AT5G18240 52.308 65 31 0 275 339 46 110 1.25e-14 75.5
MS.gene05012.t1 AT5G18240 52.308 65 31 0 275 339 46 110 1.25e-14 75.5
MS.gene05012.t1 AT5G06800 40.698 86 48 2 276 360 194 277 2.37e-14 74.7
MS.gene05012.t1 AT3G04030 49.231 65 33 0 275 339 46 110 2.56e-14 74.7
MS.gene05012.t1 AT5G06800 37.079 89 52 1 276 360 194 282 2.56e-14 74.7
MS.gene05012.t1 AT3G04030 49.231 65 33 0 275 339 46 110 3.05e-14 74.3
MS.gene05012.t1 AT2G20400 57.812 64 27 0 276 339 233 296 4.45e-14 73.9
MS.gene05012.t1 AT2G20400 57.143 63 27 0 276 338 233 295 7.78e-14 73.2
MS.gene05012.t1 AT2G06020 47.436 78 40 1 250 327 63 139 1.55e-13 71.2
MS.gene05012.t1 AT3G13040 61.818 55 21 0 276 330 243 297 2.09e-13 72.0
MS.gene05012.t1 AT3G13040 61.818 55 21 0 276 330 243 297 2.09e-13 72.0
MS.gene05012.t1 AT3G13040 61.818 55 21 0 276 330 243 297 2.09e-13 72.0
MS.gene05012.t1 AT1G69580 50.877 57 28 0 275 331 35 91 2.16e-12 68.2
MS.gene05012.t1 AT1G69580 50.877 57 28 0 275 331 35 91 2.30e-12 68.2
MS.gene05012.t1 AT2G03500 45.652 92 44 2 268 359 227 312 2.91e-12 68.6
MS.gene05012.t1 AT3G04030 47.692 65 33 1 275 339 46 109 7.58e-12 67.0
MS.gene05012.t1 AT1G68670 43.678 87 47 1 273 359 214 298 2.16e-11 65.5
MS.gene05012.t1 AT5G58080 37.405 131 68 6 273 391 193 321 3.76e-11 65.5

Find 84 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCATGCTGTTGAGCTTCT+TGG 0.223702 3.4:+66485190 MS.gene05012:CDS
GTACTTGTCCATCGCATTCT+TGG 0.295531 3.4:-66485151 None:intergenic
AGAATTATGAGGTTCATAAT+TGG 0.296903 3.4:-66484450 None:intergenic
CACATGAATCACATAAATTA+TGG 0.301972 3.4:+66484686 MS.gene05012:CDS
CCACCATTGCTTCCAATTTG+TGG 0.346594 3.4:-66486500 None:intergenic
GACGGAGACGGAGTTGAATT+AGG 0.347884 3.4:-66484860 None:intergenic
GGTGTTGTTGATGTTGAAAT+TGG 0.348173 3.4:-66484356 None:intergenic
ACTCATCCACCAACACTCTA+TGG 0.365181 3.4:+66486585 MS.gene05012:CDS
ATTTGATGTCCTCCTGATAT+TGG 0.366341 3.4:-66488768 None:intergenic
GACAAACCTGCAGCTTCTTC+AGG 0.367603 3.4:+66486094 MS.gene05012:CDS
GAGGATGATGTGCCACAAAT+TGG 0.387455 3.4:+66486488 MS.gene05012:CDS
TAATCCATATCTTGCTGTAT+TGG 0.398561 3.4:-66486563 None:intergenic
TTTGGACTTGTTTGTGGCCA+TGG 0.402795 3.4:-66488705 None:intergenic
TTCCAATCACAACCAATATC+AGG 0.403005 3.4:+66488756 MS.gene05012:CDS
ATCAGGAGGACATCAAATTC+AGG 0.406345 3.4:+66488773 MS.gene05012:CDS
TCTCTTGAATGTTCCATGGC+TGG 0.423245 3.4:-66484803 None:intergenic
CTCCTGATATTGGTTGTGAT+TGG 0.426736 3.4:-66488758 None:intergenic
TAATTCTTCAAGAACAACTT+TGG 0.432310 3.4:+66484466 MS.gene05012:CDS
CATCATCATCACTCACACTA+TGG 0.433882 3.4:+66485043 MS.gene05012:CDS
TAGACCAATACAGCAAGATA+TGG 0.437170 3.4:+66486559 MS.gene05012:CDS
ATCAGTTCCAATACTGACTT+TGG 0.438924 3.4:-66485540 None:intergenic
CTCTATGGAGTAATTCTTCA+AGG 0.442637 3.4:+66486600 MS.gene05012:CDS
CTGAAACCATCTATGTCGTT+TGG 0.446505 3.4:-66488723 None:intergenic
TAGACTGGAATCCCTTTGAT+TGG 0.450416 3.4:-66484755 None:intergenic
TTAGGCCTTTCAGATGGATC+TGG 0.451188 3.4:+66486464 MS.gene05012:intron
TAAACCTCCTGCAGCTATGT+AGG 0.458036 3.4:-66484906 None:intergenic
ACAAGTCCAAACGACATAGA+TGG 0.458406 3.4:+66488717 MS.gene05012:CDS
GTGGTGATATAAACACATCT+TGG 0.461331 3.4:-66484834 None:intergenic
ATGTCGTTTGGACTTGTTTG+TGG 0.463624 3.4:-66488711 None:intergenic
TTTAAACTCAAGTGGCTCTA+CGG 0.477786 3.4:+66484943 MS.gene05012:CDS
ATACAATACATACCTGCAAA+TGG 0.483907 3.4:-66485599 None:intergenic
GCTCACACTGAACTATCTCT+TGG 0.484804 3.4:+66484500 MS.gene05012:CDS
CACTCACACTATGGTAGTGT+TGG 0.486314 3.4:+66485052 MS.gene05012:CDS
GGTTGTGATTGGAAGATAGT+TGG 0.486453 3.4:-66488747 None:intergenic
CATGCTGTTGAGCTTCTTGG+TGG 0.491060 3.4:+66485193 MS.gene05012:CDS
TGGTGATATAAACACATCTT+GGG 0.494187 3.4:-66484833 None:intergenic
AAACCTCCTGCAGCTATGTA+GGG 0.495440 3.4:-66484905 None:intergenic
GTTGTTCTTGAAGAATTATG+AGG 0.504302 3.4:-66484461 None:intergenic
AATGAACGGTTGTGATAGAC+TGG 0.509912 3.4:-66484770 None:intergenic
AAAGAAGAATTAGAAGTACT+TGG 0.514145 3.4:-66484407 None:intergenic
AAAGTCAGTATTGGAACTGA+TGG 0.515750 3.4:+66485542 MS.gene05012:CDS
TTCAATGAAAATCCCTTCCA+AGG 0.520306 3.4:-66484333 None:intergenic
AGCAACACCAAAGTCAGTAT+TGG 0.520531 3.4:+66485533 MS.gene05012:CDS
AAGCATCCATGATGAGATCA+AGG 0.522822 3.4:+66485089 MS.gene05012:CDS
CTAAAGAAGATGCCCTTGGA+AGG 0.522865 3.4:+66484320 None:intergenic
CTTATATGAAGAGAAAGATC+AGG 0.531476 3.4:-66484380 None:intergenic
AGTGAGGAAAATGAGCTTGT+TGG 0.536485 3.4:-66484598 None:intergenic
ATTACTCCATAGAGTGTTGG+TGG 0.540356 3.4:-66486591 None:intergenic
GGTTGTTGTTGATGTTGTTG+TGG 0.543246 3.4:-66484554 None:intergenic
GAAGAATTAGAAGTACTTGG+AGG 0.543694 3.4:-66484404 None:intergenic
AAGGGTTAAGACCAATCAAA+GGG 0.548805 3.4:+66484744 MS.gene05012:CDS
TGATGATGATGGTGGTGCAA+TGG 0.555394 3.4:-66485028 None:intergenic
TTATGAGGTTCATAATTGGA+TGG 0.559155 3.4:-66484446 None:intergenic
GAAGGGTTAAGACCAATCAA+AGG 0.563565 3.4:+66484743 MS.gene05012:CDS
GTTGGATTAGGCCTTTCAGA+TGG 0.563620 3.4:+66486458 MS.gene05012:intron
TAAAGAAGATGCCCTTGGAA+GGG 0.566491 3.4:+66484321 None:intergenic
CACTATGGTAGTGTTGGACT+TGG 0.566713 3.4:+66485058 MS.gene05012:CDS
CCACAAATTGGAAGCAATGG+TGG 0.568581 3.4:+66486500 MS.gene05012:CDS
GAAGAAGACGAAGACGGAGA+CGG 0.568769 3.4:-66484872 None:intergenic
GAATTACCTGAAGAAGCTGC+AGG 0.569581 3.4:-66486100 None:intergenic
GTGTCATCAACATCATCAGA+AGG 0.572682 3.4:+66484725 MS.gene05012:CDS
AGAATTACTCCATAGAGTGT+TGG 0.593216 3.4:-66486594 None:intergenic
GTGCCACAAATTGGAAGCAA+TGG 0.595960 3.4:+66486497 MS.gene05012:CDS
GGATATTGATGAGATTTGAA+AGG 0.597530 3.4:-66485007 None:intergenic
AGTGGAGAAGAAGACGAAGA+CGG 0.610351 3.4:-66484878 None:intergenic
ATCGAGCCGCTGTAGCCACA+AGG 0.610423 3.4:+66484972 MS.gene05012:CDS
AACCTCCTGCAGCTATGTAG+GGG 0.620521 3.4:-66484904 None:intergenic
TGAGAGCACCAAGAATGCGA+TGG 0.625062 3.4:+66485143 MS.gene05012:CDS
ATTAAACCTTGTGGCTACAG+CGG 0.630486 3.4:-66484978 None:intergenic
CCTCTCCAGATCCATCTGAA+AGG 0.630610 3.4:-66486469 None:intergenic
TTGTTGTGATGTTGAAAGTG+AGG 0.638425 3.4:-66484614 None:intergenic
AAACTCAAGTGGCTCTACGG+CGG 0.640611 3.4:+66484946 MS.gene05012:CDS
TCAATGAAAATCCCTTCCAA+GGG 0.641425 3.4:-66484332 None:intergenic
AGGCTCGTTATTAAACCTTG+TGG 0.646124 3.4:-66484987 None:intergenic
TGTCATCAACATCATCAGAA+GGG 0.646503 3.4:+66484726 MS.gene05012:CDS
ATTGGAACTGATGGATGTGA+AGG 0.646666 3.4:+66485551 MS.gene05012:CDS
ACCTCCTGCAGCTATGTAGG+GGG 0.649226 3.4:-66484903 None:intergenic
CCTTTCAGATGGATCTGGAG+AGG 0.652978 3.4:+66486469 MS.gene05012:CDS
GTGAGTGATGATGATGATGG+TGG 0.675410 3.4:-66485036 None:intergenic
ATATGAAGAGAAAGATCAGG+TGG 0.676710 3.4:-66484377 None:intergenic
ACGGAGTTGAATTAGGCATG+TGG 0.690652 3.4:-66484853 None:intergenic
CAATCACAACCAATATCAGG+AGG 0.694629 3.4:+66488759 MS.gene05012:CDS
AGTGTGAGTGATGATGATGA+TGG 0.709391 3.4:-66485039 None:intergenic
TGATCAGTAGTAGAGAACCA+TGG 0.715843 3.4:+66488688 MS.gene05012:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTAATAAATTTATTTT+TGG + chr3.4:66486417-66486436 MS.gene05012:intron 0.0%
!! ATATATAAAAAATTTAAGCA+AGG - chr3.4:66486357-66486376 None:intergenic 10.0%
!! CTTCAAATTAATTAAAATTT+AGG - chr3.4:66487791-66487810 None:intergenic 10.0%
!!! AATATTATTTTTCCAATAAT+TGG - chr3.4:66488453-66488472 None:intergenic 10.0%
!!! TTTTTATATATATGTTTAAG+AGG - chr3.4:66486320-66486339 None:intergenic 10.0%
!!! TTTTTTATGAAGAATAAAAA+GGG + chr3.4:66486801-66486820 MS.gene05012:intron 10.0%
!! AAAAAAATGTGAAAAGAATA+AGG - chr3.4:66486239-66486258 None:intergenic 15.0%
!! AAATATCTTGATTACTATAA+AGG - chr3.4:66487973-66487992 None:intergenic 15.0%
!! AATAAATTGTTAATGTTACT+TGG - chr3.4:66487229-66487248 None:intergenic 15.0%
!! AGTAATTATAAATTAACTGT+TGG + chr3.4:66486440-66486459 MS.gene05012:intron 15.0%
!! ATATGAAATTGAAATGAAAT+TGG + chr3.4:66485632-66485651 MS.gene05012:intron 15.0%
!! GTAACATATAAATTTAGAAA+TGG + chr3.4:66487432-66487451 MS.gene05012:intron 15.0%
!! GTAATTATTAGACTAATTAA+GGG - chr3.4:66486154-66486173 None:intergenic 15.0%
!! TATCAAAAACAAAATAAAGA+AGG - chr3.4:66487825-66487844 None:intergenic 15.0%
!! TATGAAATTGAAATGAAATT+GGG + chr3.4:66485633-66485652 MS.gene05012:intron 15.0%
!! TGAAAAAAGTTTATAAATTC+TGG + chr3.4:66488497-66488516 MS.gene05012:intron 15.0%
!! TTAAAAGAAGAAAATTAAAG+TGG - chr3.4:66485244-66485263 None:intergenic 15.0%
!! TTATCTTATTCAATACAAAT+AGG + chr3.4:66485937-66485956 MS.gene05012:intron 15.0%
!!! AAGATATTTTAAAAATTGAG+AGG + chr3.4:66487984-66488003 MS.gene05012:intron 15.0%
!!! AAGTGAAAATTTTAGTAAAA+GGG - chr3.4:66487594-66487613 None:intergenic 15.0%
!!! ATTTGGGTTTTTTTTTTTTT+TGG - chr3.4:66487165-66487184 None:intergenic 15.0%
!!! CTTAATTAGTCTAATAATTA+CGG + chr3.4:66486153-66486172 MS.gene05012:intron 15.0%
!!! CTTTTTTATGAAGAATAAAA+AGG + chr3.4:66486800-66486819 MS.gene05012:intron 15.0%
!!! TAAGTGAAAATTTTAGTAAA+AGG - chr3.4:66487595-66487614 None:intergenic 15.0%
!! AAACCTAACAAATTCTAATA+TGG + chr3.4:66487485-66487504 MS.gene05012:intron 20.0%
!! AAATTTAAGCAAGGTAATTA+AGG - chr3.4:66486348-66486367 None:intergenic 20.0%
!! AACATATGGTAATAATTTCA+TGG - chr3.4:66487554-66487573 None:intergenic 20.0%
!! ACATATGGTAATAATTTCAT+GGG - chr3.4:66487553-66487572 None:intergenic 20.0%
!! AGATATTTCATGTTTACTTA+AGG - chr3.4:66488149-66488168 None:intergenic 20.0%
!! ATTATATTAGAATAACCATG+TGG + chr3.4:66487674-66487693 MS.gene05012:intron 20.0%
!! CAAAAGTAAATAAACAAAGT+CGG - chr3.4:66486723-66486742 None:intergenic 20.0%
!! CGTAATTATTAGACTAATTA+AGG - chr3.4:66486155-66486174 None:intergenic 20.0%
!! GAATTATATTTGAGTGTAAT+TGG + chr3.4:66488265-66488284 MS.gene05012:intron 20.0%
!! GGAAAAATAATATTCTACAT+TGG + chr3.4:66488459-66488478 MS.gene05012:intron 20.0%
!! TATAAATTAACTGTTGGATT+AGG + chr3.4:66486446-66486465 MS.gene05012:intron 20.0%
!! TATTACCATATGTTGTATTT+GGG + chr3.4:66487560-66487579 MS.gene05012:intron 20.0%
!! TCCTAATATTACAAATTTCA+AGG + chr3.4:66487056-66487075 MS.gene05012:intron 20.0%
!! TTATTACCATATGTTGTATT+TGG + chr3.4:66487559-66487578 MS.gene05012:intron 20.0%
!! TTCACATATATAGACTTTAA+AGG - chr3.4:66486279-66486298 None:intergenic 20.0%
!!! AGATTGATTTAGATTCAATA+TGG + chr3.4:66487742-66487761 MS.gene05012:intron 20.0%
!!! ATTGATTTAGATTCAATATG+GGG + chr3.4:66487744-66487763 MS.gene05012:intron 20.0%
!!! ATTGTTGTTGTTATTATGTT+TGG + chr3.4:66485461-66485480 MS.gene05012:intron 20.0%
!!! CTCAATTTGTTTTTATAAGT+TGG + chr3.4:66487267-66487286 MS.gene05012:intron 20.0%
!!! GATTGATTTAGATTCAATAT+GGG + chr3.4:66487743-66487762 MS.gene05012:intron 20.0%
! AAAAAATTGCATCAGTTCAA+TGG - chr3.4:66488633-66488652 None:intergenic 25.0%
! AACTTAAGTACTAGTCATTT+GGG - chr3.4:66487181-66487200 None:intergenic 25.0%
! AAGGTACAAAAGATATACAA+AGG - chr3.4:66486885-66486904 None:intergenic 25.0%
! AATTAAGTAGTAAGCTAAGA+AGG + chr3.4:66485728-66485747 MS.gene05012:intron 25.0%
! AATTTCTTGTGTTGAAATTG+TGG + chr3.4:66485989-66486008 MS.gene05012:intron 25.0%
! ACAAAATAAAGAAGGTTTAC+AGG - chr3.4:66487817-66487836 None:intergenic 25.0%
! AGAATTATGAGGTTCATAAT+TGG - chr3.4:66484453-66484472 None:intergenic 25.0%
! CACATGAATCACATAAATTA+TGG + chr3.4:66484686-66484705 MS.gene05012:CDS 25.0%
! CTCTAAATAGTTAGGATAAA+AGG + chr3.4:66487510-66487529 MS.gene05012:intron 25.0%
! GACTAATTAAGGGAAAAAAA+TGG - chr3.4:66486144-66486163 None:intergenic 25.0%
! GAGAAAAATGTTTACTTTCA+TGG - chr3.4:66485219-66485238 None:intergenic 25.0%
! GCCTTGAAATTTGTAATATT+AGG - chr3.4:66487060-66487079 None:intergenic 25.0%
! TAAAATATGCATTAATCACG+AGG - chr3.4:66485901-66485920 None:intergenic 25.0%
! TAATTCTTCAAGAACAACTT+TGG + chr3.4:66484466-66484485 MS.gene05012:CDS 25.0%
! TCAAGATCCATATCAATATT+CGG - chr3.4:66487101-66487120 None:intergenic 25.0%
! TCTCATTAAGTAAACATTAG+TGG + chr3.4:66488201-66488220 MS.gene05012:intron 25.0%
! TTGATTTAGATTCAATATGG+GGG + chr3.4:66487745-66487764 MS.gene05012:intron 25.0%
!! CTTTTATCCTAACTATTTAG+AGG - chr3.4:66487512-66487531 None:intergenic 25.0%
!! TATATATGTGAACACTTTTG+AGG + chr3.4:66486287-66486306 MS.gene05012:intron 25.0%
!! TGATTTAGATGGTGAATTTT+AGG + chr3.4:66485510-66485529 MS.gene05012:intron 25.0%
!! TGTCAACTTATCAACTATTT+TGG - chr3.4:66487381-66487400 None:intergenic 25.0%
!!! AAAGAAGAATTAGAAGTACT+TGG - chr3.4:66484410-66484429 None:intergenic 25.0%
!!! CTGATGCAATTTTTTTTTCT+TGG + chr3.4:66488638-66488657 MS.gene05012:intron 25.0%
!!! CTTGTTGGTTTTGATAATAA+GGG - chr3.4:66484586-66484605 None:intergenic 25.0%
!!! TATTTACTTTTGCTTTTGCA+TGG + chr3.4:66486731-66486750 MS.gene05012:intron 25.0%
!!! TTATGTTTGGTGTTATAGAT+AGG + chr3.4:66485474-66485493 MS.gene05012:intron 25.0%
!!! TTTTGATAATAAGGGTTATG+TGG - chr3.4:66484578-66484597 None:intergenic 25.0%
AAGAATAAAAAGGGTTCTTG+TGG + chr3.4:66486810-66486829 MS.gene05012:intron 30.0%
AAGGCTCATAATAGTAAGTT+TGG + chr3.4:66488243-66488262 MS.gene05012:intron 30.0%
AATCTGATACAGGTGTAAAA+TGG - chr3.4:66485295-66485314 None:intergenic 30.0%
AATGACAGACAGTAGTTAAT+AGG - chr3.4:66488075-66488094 None:intergenic 30.0%
AATTAAAATTTAGGTGCACG+AGG - chr3.4:66487782-66487801 None:intergenic 30.0%
ACATTCCCAAATACAACATA+TGG - chr3.4:66487568-66487587 None:intergenic 30.0%
ACTTGAGTTTAAAAACGACA+TGG - chr3.4:66484936-66484955 None:intergenic 30.0%
ATACAATACATACCTGCAAA+TGG - chr3.4:66485602-66485621 None:intergenic 30.0%
ATAGCCAATAAAGAAGAAAG+TGG + chr3.4:66485660-66485679 MS.gene05012:intron 30.0%
ATATGGACCTCTAAATAGTT+AGG + chr3.4:66487502-66487521 MS.gene05012:intron 30.0%
ATTAAAATTTAGGTGCACGA+GGG - chr3.4:66487781-66487800 None:intergenic 30.0%
CAAGATCCATATCAATATTC+GGG - chr3.4:66487100-66487119 None:intergenic 30.0%
CATTAAGTAAACATTAGTGG+TGG + chr3.4:66488204-66488223 MS.gene05012:intron 30.0%
CTGGTAAAAAAGGAAATGAA+CGG - chr3.4:66484787-66484806 None:intergenic 30.0%
CTTATATGAAGAGAAAGATC+AGG - chr3.4:66484383-66484402 None:intergenic 30.0%
CTTGAGTTTAAAAACGACAT+GGG - chr3.4:66484935-66484954 None:intergenic 30.0%
GAACTTAAGTACTAGTCATT+TGG - chr3.4:66487182-66487201 None:intergenic 30.0%
GAATGAATGAATGAATGTGT+GGG + chr3.4:66485689-66485708 MS.gene05012:intron 30.0%
GATAATAAGGTTGTAATGAG+AGG - chr3.4:66485869-66485888 None:intergenic 30.0%
GATTACTATAAAGGTAGAAC+TGG - chr3.4:66487964-66487983 None:intergenic 30.0%
GGATATTGATGAGATTTGAA+AGG - chr3.4:66485010-66485029 None:intergenic 30.0%
GTTGTTCTTGAAGAATTATG+AGG - chr3.4:66484464-66484483 None:intergenic 30.0%
TACAACTTAAACCAATCCTA+AGG - chr3.4:66488407-66488426 None:intergenic 30.0%
TAGTTGTAATACATAGCCTT+AGG + chr3.4:66488388-66488407 MS.gene05012:intron 30.0%
TATAGTGTTACACTTCATGT+TGG + chr3.4:66487340-66487359 MS.gene05012:intron 30.0%
TCATAACCCGAATATTGATA+TGG + chr3.4:66487091-66487110 MS.gene05012:intron 30.0%
TGAATGAATGAATGAATGTG+TGG + chr3.4:66485688-66485707 MS.gene05012:intron 30.0%
TGATTTAGATTCAATATGGG+GGG + chr3.4:66487746-66487765 MS.gene05012:intron 30.0%
TGGTGATATAAACACATCTT+GGG - chr3.4:66484836-66484855 None:intergenic 30.0%
TTATGAGGTTCATAATTGGA+TGG - chr3.4:66484449-66484468 None:intergenic 30.0%
TTGCACAAATCAAGAAATAG+TGG + chr3.4:66487291-66487310 MS.gene05012:intron 30.0%
TTTAAGCAAGGTAATTAAGG+TGG - chr3.4:66486345-66486364 None:intergenic 30.0%
TTTGGCTAATGTGATTTAGA+TGG + chr3.4:66485499-66485518 MS.gene05012:intron 30.0%
! ATGTTACTTGGAAGAATACA+TGG - chr3.4:66487217-66487236 None:intergenic 30.0%
! GGTCCATATTAGAATTTGTT+AGG - chr3.4:66487491-66487510 None:intergenic 30.0%
! GTCAATTTTCAGATCAAAGA+GGG + chr3.4:66486528-66486547 MS.gene05012:CDS 30.0%
! TAATCCATATCTTGCTGTAT+TGG - chr3.4:66486566-66486585 None:intergenic 30.0%
! TCTTTTGTACCTTAGTGATT+TGG + chr3.4:66486892-66486911 MS.gene05012:intron 30.0%
! TTTTTCTCTTGAATGTTCCA+TGG - chr3.4:66484810-66484829 None:intergenic 30.0%
!! CTTCATAAAAAAGAGTGTTG+TGG - chr3.4:66486793-66486812 None:intergenic 30.0%
!! GAGGTTGATGTTTGATAATA+AGG - chr3.4:66485882-66485901 None:intergenic 30.0%
!! TTGGGTTTTATGTAATCTAC+AGG - chr3.4:66487132-66487151 None:intergenic 30.0%
!!! ATGTCGTTTTTAAACTCAAG+TGG + chr3.4:66484935-66484954 MS.gene05012:CDS 30.0%
!!! CTTGGAAGAAATTTTAGTTG+TGG + chr3.4:66484518-66484537 MS.gene05012:CDS 30.0%
!!! GCTTGTTGGTTTTGATAATA+AGG - chr3.4:66484587-66484606 None:intergenic 30.0%
!!! TTTTTTGGAGTGAGTCATTT+GGG - chr3.4:66487150-66487169 None:intergenic 30.0%
!!! TTTTTTTGGAGTGAGTCATT+TGG - chr3.4:66487151-66487170 None:intergenic 30.0%
AAGGGTTAAGACCAATCAAA+GGG + chr3.4:66484744-66484763 MS.gene05012:CDS 35.0%
ACGAAGATCAAATCTGATAC+AGG - chr3.4:66485305-66485324 None:intergenic 35.0%
AGAATTACTCCATAGAGTGT+TGG - chr3.4:66486597-66486616 None:intergenic 35.0%
AGGCATGTCTTTCTCTTATT+AGG + chr3.4:66488004-66488023 MS.gene05012:intron 35.0%
ATAATTGGAGATGCTCTTGA+TGG - chr3.4:66488438-66488457 None:intergenic 35.0%
ATATGAAGAGAAAGATCAGG+TGG - chr3.4:66484380-66484399 None:intergenic 35.0%
ATTTGATGTCCTCCTGATAT+TGG - chr3.4:66488771-66488790 None:intergenic 35.0%
CAAAAACCTTGATCTCATCA+TGG - chr3.4:66485098-66485117 None:intergenic 35.0%
CAAAACAGTTCATGCATGTT+TGG + chr3.4:66488593-66488612 MS.gene05012:intron 35.0%
CAAACATACACACAAGTCAA+AGG - chr3.4:66487034-66487053 None:intergenic 35.0%
CTCTATGGAGTAATTCTTCA+AGG + chr3.4:66486600-66486619 MS.gene05012:CDS 35.0%
CTTGTGAGAGTAAGACTATT+AGG + chr3.4:66485404-66485423 MS.gene05012:intron 35.0%
GTGGTGATATAAACACATCT+TGG - chr3.4:66484837-66484856 None:intergenic 35.0%
TAAGTAAACATTAGTGGTGG+TGG + chr3.4:66488207-66488226 MS.gene05012:intron 35.0%
TAATCGAATGCTCATTCGTT+AGG + chr3.4:66486956-66486975 MS.gene05012:intron 35.0%
TAGACCAATACAGCAAGATA+TGG + chr3.4:66486559-66486578 MS.gene05012:CDS 35.0%
TCAATGAAAATCCCTTCCAA+GGG - chr3.4:66484335-66484354 None:intergenic 35.0%
TCATGTAAAAAGCCATTTGC+AGG + chr3.4:66485587-66485606 MS.gene05012:CDS 35.0%
TGAGAGGATTGTTGCATTAT+TGG - chr3.4:66485853-66485872 None:intergenic 35.0%
TGAGAGTAAGACTATTAGGT+GGG + chr3.4:66485408-66485427 MS.gene05012:intron 35.0%
TGCACCACTTTCTTCTTTAT+TGG - chr3.4:66485667-66485686 None:intergenic 35.0%
TGCTCATTCGTTAGGATAAA+TGG + chr3.4:66486964-66486983 MS.gene05012:intron 35.0%
TGTCATCAACATCATCAGAA+GGG + chr3.4:66484726-66484745 MS.gene05012:CDS 35.0%
TTACTATTATGAGCCTTGCA+TGG - chr3.4:66488240-66488259 None:intergenic 35.0%
TTCAATGAAAATCCCTTCCA+AGG - chr3.4:66484336-66484355 None:intergenic 35.0%
TTCCAATCACAACCAATATC+AGG + chr3.4:66488756-66488775 MS.gene05012:CDS 35.0%
TTGTTGTGATGTTGAAAGTG+AGG - chr3.4:66484617-66484636 None:intergenic 35.0%
! AAAGTCAGTATTGGAACTGA+TGG + chr3.4:66485542-66485561 MS.gene05012:CDS 35.0%
! CGTCAATTTTCAGATCAAAG+AGG + chr3.4:66486527-66486546 MS.gene05012:CDS 35.0%
! CTTCTTTTTGTCGGCAATTT+AGG - chr3.4:66485121-66485140 None:intergenic 35.0%
! GTAATACATAGCCTTAGGAT+TGG + chr3.4:66488393-66488412 MS.gene05012:intron 35.0%
! TTTAAACTCAAGTGGCTCTA+CGG + chr3.4:66484943-66484962 MS.gene05012:CDS 35.0%
! TTTGTACCTTAGTGATTTGG+TGG + chr3.4:66486895-66486914 MS.gene05012:intron 35.0%
!! ATCAGTTCCAATACTGACTT+TGG - chr3.4:66485543-66485562 None:intergenic 35.0%
!! GAAGAATTAGAAGTACTTGG+AGG - chr3.4:66484407-66484426 None:intergenic 35.0%
!! GGTGTTGTTGATGTTGAAAT+TGG - chr3.4:66484359-66484378 None:intergenic 35.0%
!! TCAAGAGCATCTCCAATTAT+TGG + chr3.4:66488438-66488457 MS.gene05012:intron 35.0%
!! TGCATGAACTGTTTTGTTGA+TGG - chr3.4:66488589-66488608 None:intergenic 35.0%
!! TGGTGTTATAGATAGGTGTT+TGG + chr3.4:66485481-66485500 MS.gene05012:intron 35.0%
!!! ATTTCCTTTTTTACCAGCCA+TGG + chr3.4:66484790-66484809 MS.gene05012:CDS 35.0%
AAGCATCCATGATGAGATCA+AGG + chr3.4:66485089-66485108 MS.gene05012:CDS 40.0%
AATGAACGGTTGTGATAGAC+TGG - chr3.4:66484773-66484792 None:intergenic 40.0%
AATGAATGAATGTGTGGGAG+TGG + chr3.4:66485694-66485713 MS.gene05012:intron 40.0%
ACAAGTCCAAACGACATAGA+TGG + chr3.4:66488717-66488736 MS.gene05012:CDS 40.0%
ACATTGATAGGCAAGTCACA+TGG - chr3.4:66488298-66488317 None:intergenic 40.0%
ACCAATCCACCAAATCACTA+AGG - chr3.4:66486904-66486923 None:intergenic 40.0%
ACCATGTGGTGAAATTCTTG+AGG + chr3.4:66487688-66487707 MS.gene05012:intron 40.0%
ACCTCAAGAATTTCACCACA+TGG - chr3.4:66487692-66487711 None:intergenic 40.0%
AGCAACACCAAAGTCAGTAT+TGG + chr3.4:66485533-66485552 MS.gene05012:CDS 40.0%
AGGCTCGTTATTAAACCTTG+TGG - chr3.4:66484990-66485009 None:intergenic 40.0%
AGTGAGGAAAATGAGCTTGT+TGG - chr3.4:66484601-66484620 None:intergenic 40.0%
ATCAGGAGGACATCAAATTC+AGG + chr3.4:66488773-66488792 MS.gene05012:CDS 40.0%
ATTAAACCTTGTGGCTACAG+CGG - chr3.4:66484981-66485000 None:intergenic 40.0%
CAATCACAACCAATATCAGG+AGG + chr3.4:66488759-66488778 MS.gene05012:CDS 40.0%
CATCATCATCACTCACACTA+TGG + chr3.4:66485043-66485062 MS.gene05012:CDS 40.0%
CTGAAACCATCTATGTCGTT+TGG - chr3.4:66488726-66488745 None:intergenic 40.0%
GAAGGGTTAAGACCAATCAA+AGG + chr3.4:66484743-66484762 MS.gene05012:CDS 40.0%
GGTTGTGATTGGAAGATAGT+TGG - chr3.4:66488750-66488769 None:intergenic 40.0%
GTGAGAGTAAGACTATTAGG+TGG + chr3.4:66485407-66485426 MS.gene05012:intron 40.0%
GTGTCATCAACATCATCAGA+AGG + chr3.4:66484725-66484744 MS.gene05012:CDS 40.0%
TAGACTGGAATCCCTTTGAT+TGG - chr3.4:66484758-66484777 None:intergenic 40.0%
TGATCAGTAGTAGAGAACCA+TGG + chr3.4:66488688-66488707 MS.gene05012:intron 40.0%
TGTTCCATGGCTGGTAAAAA+AGG - chr3.4:66484797-66484816 None:intergenic 40.0%
! AGTGTGAGTGATGATGATGA+TGG - chr3.4:66485042-66485061 None:intergenic 40.0%
! ATGTCGTTTGGACTTGTTTG+TGG - chr3.4:66488714-66488733 None:intergenic 40.0%
! ATTGGAACTGATGGATGTGA+AGG + chr3.4:66485551-66485570 MS.gene05012:CDS 40.0%
! CTCCTGATATTGGTTGTGAT+TGG - chr3.4:66488761-66488780 None:intergenic 40.0%
! GCTCTCATGCTTCTTTTTGT+CGG - chr3.4:66485130-66485149 None:intergenic 40.0%
! GGTTGTTGTTGATGTTGTTG+TGG - chr3.4:66484557-66484576 None:intergenic 40.0%
!! AAAAAAGAGTGTTGTGGACG+TGG - chr3.4:66486787-66486806 None:intergenic 40.0%
!! AAAAAGAGTGTTGTGGACGT+GGG - chr3.4:66486786-66486805 None:intergenic 40.0%
!! ACCTTAGTGATTTGGTGGAT+TGG + chr3.4:66486900-66486919 MS.gene05012:intron 40.0%
!! ATTACTCCATAGAGTGTTGG+TGG - chr3.4:66486594-66486613 None:intergenic 40.0%
AAACCTCCTGCAGCTATGTA+GGG - chr3.4:66484908-66484927 None:intergenic 45.0%
ACGGAGTTGAATTAGGCATG+TGG - chr3.4:66484856-66484875 None:intergenic 45.0%
ACTCATCCACCAACACTCTA+TGG + chr3.4:66486585-66486604 MS.gene05012:CDS 45.0%
AGTGGAGAAGAAGACGAAGA+CGG - chr3.4:66484881-66484900 None:intergenic 45.0%
ATCAGAGACTGTGTCATGTC+TGG - chr3.4:66485775-66485794 None:intergenic 45.0%
CCACAAATTGGAAGCAATGG+TGG + chr3.4:66486500-66486519 MS.gene05012:CDS 45.0%
CCACCATTGCTTCCAATTTG+TGG - chr3.4:66486503-66486522 None:intergenic 45.0%
GAATTACCTGAAGAAGCTGC+AGG - chr3.4:66486103-66486122 None:intergenic 45.0%
GAGGATGATGTGCCACAAAT+TGG + chr3.4:66486488-66486507 MS.gene05012:CDS 45.0%
GCTCACACTGAACTATCTCT+TGG + chr3.4:66484500-66484519 MS.gene05012:CDS 45.0%
GTACTTGTCCATCGCATTCT+TGG - chr3.4:66485154-66485173 None:intergenic 45.0%
GTGCCACAAATTGGAAGCAA+TGG + chr3.4:66486497-66486516 MS.gene05012:CDS 45.0%
GTTCATGCTGTTGAGCTTCT+TGG + chr3.4:66485190-66485209 MS.gene05012:CDS 45.0%
TAAACCTCCTGCAGCTATGT+AGG - chr3.4:66484909-66484928 None:intergenic 45.0%
TCTCTTGAATGTTCCATGGC+TGG - chr3.4:66484806-66484825 None:intergenic 45.0%
TTAGGCCTTTCAGATGGATC+TGG + chr3.4:66486464-66486483 MS.gene05012:intron 45.0%
! CACTATGGTAGTGTTGGACT+TGG + chr3.4:66485058-66485077 MS.gene05012:CDS 45.0%
! CACTCACACTATGGTAGTGT+TGG + chr3.4:66485052-66485071 MS.gene05012:CDS 45.0%
! GTTGGATTAGGCCTTTCAGA+TGG + chr3.4:66486458-66486477 MS.gene05012:intron 45.0%
! TTTGGACTTGTTTGTGGCCA+TGG - chr3.4:66488708-66488727 None:intergenic 45.0%
!! GTAAACATTAGTGGTGGTGG+AGG + chr3.4:66488210-66488229 MS.gene05012:intron 45.0%
!! GTGAGTGATGATGATGATGG+TGG - chr3.4:66485039-66485058 None:intergenic 45.0%
!! TGATGATGATGGTGGTGCAA+TGG - chr3.4:66485031-66485050 None:intergenic 45.0%
!!! AAAAAAATTGTATTTAATTT+AGG + chr3.4:66488843-66488862 MS.gene05012:intron 5.0%
!!! AATTAAATACAATTTTTTTT+TGG - chr3.4:66488842-66488861 None:intergenic 5.0%
AACCTCCTGCAGCTATGTAG+GGG - chr3.4:66484907-66484926 None:intergenic 50.0%
CATGCTGTTGAGCTTCTTGG+TGG + chr3.4:66485193-66485212 MS.gene05012:CDS 50.0%
CCTCTCCAGATCCATCTGAA+AGG - chr3.4:66486472-66486491 None:intergenic 50.0%
CCTTTCAGATGGATCTGGAG+AGG + chr3.4:66486469-66486488 MS.gene05012:CDS 50.0%
GAAGAAGACGAAGACGGAGA+CGG - chr3.4:66484875-66484894 None:intergenic 50.0%
GACAAACCTGCAGCTTCTTC+AGG + chr3.4:66486094-66486113 MS.gene05012:CDS 50.0%
GACGGAGACGGAGTTGAATT+AGG - chr3.4:66484863-66484882 None:intergenic 50.0%
! AAACTCAAGTGGCTCTACGG+CGG + chr3.4:66484946-66484965 MS.gene05012:CDS 50.0%
!! TGAGAGCACCAAGAATGCGA+TGG + chr3.4:66485143-66485162 MS.gene05012:CDS 50.0%
ACCTCCTGCAGCTATGTAGG+GGG - chr3.4:66484906-66484925 None:intergenic 55.0%
CTTTCCCCCTACATAGCTGC+AGG + chr3.4:66484899-66484918 MS.gene05012:CDS 55.0%
GCAGCTATGTAGGGGGAAAG+TGG - chr3.4:66484899-66484918 None:intergenic 55.0%
TGGTGGAGGCTTACCATGCA+AGG + chr3.4:66488224-66488243 MS.gene05012:intron 55.0%
ATCGAGCCGCTGTAGCCACA+AGG + chr3.4:66484972-66484991 MS.gene05012:CDS 60.0%
TCCCCCTACATAGCTGCAGG+AGG + chr3.4:66484902-66484921 MS.gene05012:CDS 60.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 66484329 66488870 66484329 ID=MS.gene05012
chr3.4 mRNA 66484329 66488870 66484329 ID=MS.gene05012.t1;Parent=MS.gene05012
chr3.4 exon 66484329 66485223 66484329 ID=MS.gene05012.t1.exon1;Parent=MS.gene05012.t1
chr3.4 CDS 66484329 66485223 66484329 ID=cds.MS.gene05012.t1;Parent=MS.gene05012.t1
chr3.4 exon 66485532 66485608 66485532 ID=MS.gene05012.t1.exon2;Parent=MS.gene05012.t1
chr3.4 CDS 66485532 66485608 66485532 ID=cds.MS.gene05012.t1;Parent=MS.gene05012.t1
chr3.4 exon 66486070 66486115 66486070 ID=MS.gene05012.t1.exon3;Parent=MS.gene05012.t1
chr3.4 CDS 66486070 66486115 66486070 ID=cds.MS.gene05012.t1;Parent=MS.gene05012.t1
chr3.4 exon 66486468 66486621 66486468 ID=MS.gene05012.t1.exon4;Parent=MS.gene05012.t1
chr3.4 CDS 66486468 66486621 66486468 ID=cds.MS.gene05012.t1;Parent=MS.gene05012.t1
chr3.4 exon 66488695 66488794 66488695 ID=MS.gene05012.t1.exon5;Parent=MS.gene05012.t1
chr3.4 CDS 66488695 66488794 66488695 ID=cds.MS.gene05012.t1;Parent=MS.gene05012.t1
chr3.4 exon 66488865 66488870 66488865 ID=MS.gene05012.t1.exon6;Parent=MS.gene05012.t1
chr3.4 CDS 66488865 66488870 66488865 ID=cds.MS.gene05012.t1;Parent=MS.gene05012.t1
Gene Sequence

>MS.gene05012

ATGCCCTTGGAAGGGATTTTCATTGAACCAATTTCAACATCAACAACACCACCTGATCTTTCTCTTCATATAAGTCCTCCAAGTACTTCTAATTCTTCTTTGATTAACACAACTCAACCATCCAATTATGAACCTCATAATTCTTCAAGAACAACTTTGGCTCAAGCTCAAGCTCACACTGAACTATCTCTTGGAAGAAATTTTAGTTGTGGTGCTCAAGAACAACCACAACAACATCAACAACAACCACATAACCCTTATTATCAAAACCAACAAGCTCATTTTCCTCACTTTCAACATCACAACAATCACAACTCTACAACAACAACAACAAGTACTACAACAAATTCTTCAAGTCACATGAATCACATAAATTATGGTGTTTCATTGCTTGATGTGTCATCAACATCATCAGAAGGGTTAAGACCAATCAAAGGGATTCCAGTCTATCACAACCGTTCATTTCCTTTTTTACCAGCCATGGAACATTCAAGAGAAAAAGATCCCAAGATGTGTTTATATCACCACATGCCTAATTCAACTCCGTCTCCGTCTTCGTCTTCTTCTCCACTTTCCCCCTACATAGCTGCAGGAGGTTTAGATCCCATGTCGTTTTTAAACTCAAGTGGCTCTACGGCGGCTTATCGAGCCGCTGTAGCCACAAGGTTTAATAACGAGCCTTTCAAATCTCATCAATATCCATTGCACCACCATCATCATCATCACTCACACTATGGTAGTGTTGGACTTGGTAGCTCAGAAGCATCCATGATGAGATCAAGGTTTTTGCCTAAATTGCCGACAAAAAGAAGCATGAGAGCACCAAGAATGCGATGGACAAGTACTCTTCATGCTAGATTTGTTCATGCTGTTGAGCTTCTTGGTGGCCATGAAAGTAAACATTTTTCTCTTCCACTTTAATTTTCTTCTTTTAAATTTTCTCAGAGACAGTGATACTAATGACCATTTTACACCTGTATCAGATTTGATCTTCGTCTTTTGAGATTACAAATTTTTTATAAGTAATTAAATTTCTTTTAATGAAATAAAAAGAAAGAGTGTTGTTTACTTGTTACTTGTGAGAGTAAGACTATTAGGTGGGTGTTATGTTAAATATTTAGTATTTTATTTTATTGTTGTTGTTATTATGTTTGGTGTTATAGATAGGTGTTTGGCTAATGTGATTTAGATGGTGAATTTTAGGAGCAACACCAAAGTCAGTATTGGAACTGATGGATGTGAAGGATCTCACATTAGCTCATGTAAAAAGCCATTTGCAGGTATGTATTGTATGTATCTATCTATATGAAATTGAAATGAAATTGGGCACAATAGCCAATAAAGAAGAAAGTGGTGCAGTGAATGAATGAATGAATGTGTGGGAGTGGATAGTAGTAGTAATTAAGTAGTAAGCTAAGAAGGAGACTTTATCATCTGAGACGACCAGACATGACACAGTCTCTGATTATAGTCATAGAAAGAGAGAGAAAACTGACAACAACAAATAAAAGTCATCATTTTCCAATAATGCAACAATCCTCTCATTACAACCTTATTATCAAACATCAACCTCGTGATTAATGCATATTTTATATATTTTTATATATCTTATCTTATTCAATACAAATAGGTTTATTTTTTATATATATATTTTCATACTAATTTCTTGTGTTGAAATTGTGGAAGTATCTTTGTAATTAGTATAAAATGTTTGTTTTGTTTTGTGATTTGTTCTTCACAGATGTATCGAACTGTTAAGACAACTGACAAACCTGCAGCTTCTTCAGGTAATTCGTATTGCTCAATCTTCAACCATTTTTTTCCCTTAATTAGTCTAATAATTACGGATGTATTAATTTCTCTTGTTTTTATAGAGAATGTCATCACTTGTGAGTTGTGACTTACTACCTTATTCTTTTCACATTTTTTTTACTGTTATTTTTTCTACCTTTAAAGTCTATATATGTGAACACTTTTGAGGCTTTTTGCCTCTTAAACATATATATAAAAATTCCACCTTAATTACCTTGCTTAAATTTTTTATATATAAAATTATGAAGCAAGATGTGTGCATGCATGTACTTTACATTAATTAATAAATTTATTTTTGGAGTAATTATAAATTAACTGTTGGATTAGGCCTTTCAGATGGATCTGGAGAGGATGATGTGCCACAAATTGGAAGCAATGGTGGAATTCGTCAATTTTCAGATCAAAGAGGGCTAACAGATAGACCAATACAGCAAGATATGGATTACTCATCCACCAACACTCTATGGAGTAATTCTTCAAGGTAACATTATTTTTCAATGTTACTATTTTTCTAAATTTTGAAGTACATATGTTTTATGTGCTTATATAGATGTACATATTTAATTATTTTTTTTGTCACCGACTTTGTTTATTTACTTTTGCTTTTGCATGGAGTATCTCTTGTATAAAAATCAATGCAAACCCACGTCCACAACACTCTTTTTTATGAAGAATAAAAAGGGTTCTTGTGGCAGCTTTTGCTTTAAACTTGTGTGTTTCATTTTCTTCTTTCTTTTCTTTCCTTTGTATATCTTTTGTACCTTAGTGATTTGGTGGATTGGTGAATTCATATAACAAAAGAATGCTACAAGACATAATCGAATGCTCATTCGTTAGGATAAATGGAAAGCAACACAAAGCTTCAGTAATTTGCTTTTTTTTTTCTTCTTCCTTTGACTTGTGTGTATGTTTGTCTCCTAATATTACAAATTTCAAGGCTAATTATTTGATCATAACCCGAATATTGATATGGATCTTGATTTCTGCACCTGTAGATTACATAAAACCCAAATGACTCACTCCAAAAAAAAAAAAAACCCAAATGACTAGTACTTAAGTTCTTCGTATATTGACCATGTATTCTTCCAAGTAACATTAACAATTTATTTTGAAATATATAGTATCACTCAATTTGTTTTTATAAGTTGGTTTGCACAAATCAAGAAATAGTGGTAACTAAATACTAAACAGATTTCAATTATAGTGTTACACTTCATGTTGGTTCACTCTAGTAAGTCCAAAATAGTTGATAAGTTGACAATATAATCTGAAAAAAAAAAATATAGTAATTGTAACATATAAATTTAGAAATGGTGCATAAACAAAAATATATTTTTTATTATAAAACCTAACAAATTCTAATATGGACCTCTAAATAGTTAGGATAAAAGGAAAGCAACACAAAGCTACCCATGAAATTATTACCATATGTTGTATTTGGGAATGTGCACCCTTTTACTAAAATTTTCACTTACAATGCTGTTTCTTTGCTTGTTATAATGTAAATGCGAACTCTTGACTTAAATTACTCGAATTATATTAGAATAACCATGTGGTGAAATTCTTGAGGTCATTATTTTCTATCAAAAAATAAAAGCAAAAGATTGATTTAGATTCAATATGGGGGGTTAAATTGACCCTCGTGCACCTAAATTTTAATTAATTTGAAGTAGCCTGTAAACCTTCTTTATTTTGTTTTTGATAAACAAATCTTGATTTAATTTTTTGTCTTTGAGCTACTTTATGTAAAAATCTTACTTATAGTTAACTATTTTGATGTTGACACTCGACATTCTCTGCAATAATCAAAATTCATATGTCCAGTTCTACCTTTATAGTAATCAAGATATTTTAAAAATTGAGAGGCATGTCTTTCTCTTATTAGGTAATATCTTGATATAAATATATATATTAAAACTTATAGAGTAACACCTATTAACTACTGTCTGTCATTTTTAGTCTAAAAAAAAATATTCTACTGTTTGTCATGATTAAAAAAACATTACCTTAAGTAAACATGAAATATCTCATTGTGACACAAACAAATTATCATTACAAAGTCTCATTAAGTAAACATTAGTGGTGGTGGAGGCTTACCATGCAAGGCTCATAATAGTAAGTTTGGAATTATATTTGAGTGTAATTGGCATTTTGCCATGTGACTTGCCTATCAATGTATCATCCATAAGTGTTTGTTTTTCATTTAGTATACTGTATATCATATACTTGAATCAGTGCTTACATGTATAGTTGTAATACATAGCCTTAGGATTGGTTTAAGTTGTACATTTAATCCATCAAGAGCATCTCCAATTATTGGAAAAATAATATTCTACATTGGAAAAGTGATAAAGACTGAAAAAAGTTTATAAATTCTGGAGTGTGATCGTACTTGAATTGTATCTATACTAAAGACATAGATGTATAGTGAAGTTTTGCACACTGCCATCAACAAAACAGTTCATGCATGTTTGGTATACATAAAGAATCCATTGAACTGATGCAATTTTTTTTTCTTGGTTGTGTCATTTCATCTTAATTAAATTATGATCAGTAGTAGAGAACCATGGCCACAAACAAGTCCAAACGACATAGATGGTTTCAGACCAACTATCTTCCAATCACAACCAATATCAGGAGGACATCAAATTCAGGTATAACTAATGAGTTTAATATATTTGTTATCATTAATTTGTAACCAAAAAAAAATTGTATTTAATTTAGGCTTAA
Protein sequence

>MS.gene05012.t1

MPLEGIFIEPISTSTTPPDLSLHISPPSTSNSSLINTTQPSNYEPHNSSRTTLAQAQAHTELSLGRNFSCGAQEQPQQHQQQPHNPYYQNQQAHFPHFQHHNNHNSTTTTTSTTTNSSSHMNHINYGVSLLDVSSTSSEGLRPIKGIPVYHNRSFPFLPAMEHSREKDPKMCLYHHMPNSTPSPSSSSSPLSPYIAAGGLDPMSFLNSSGSTAAYRAAVATRFNNEPFKSHQYPLHHHHHHHSHYGSVGLGSSEASMMRSRFLPKLPTKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGLSDGSGEDDVPQIGSNGGIRQFSDQRGLTDRPIQQDMDYSSTNTLWSNSSSSREPWPQTSPNDIDGFRPTIFQSQPISGGHQIQA