Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050126.t1 | XP_003606365.1 | 99.2 | 258 | 2 | 0 | 1 | 258 | 1 | 258 | 2.10E-139 | 505 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050126.t1 | A2RVK7 | 73.2 | 257 | 67 | 2 | 1 | 256 | 1 | 256 | 3.8e-105 | 382.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050126.t1 | G7JND2 | 99.2 | 258 | 2 | 0 | 1 | 258 | 1 | 258 | 1.5e-139 | 505.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene050621 | MS.gene050126 | PPI |
| MS.gene025936 | MS.gene050126 | PPI |
| MS.gene22822 | MS.gene050126 | PPI |
| MS.gene024471 | MS.gene050126 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050126.t1 | MTR_4g058720 | 99.225 | 258 | 2 | 0 | 1 | 258 | 1 | 258 | 0.0 | 531 |
| MS.gene050126.t1 | MTR_7g116920 | 32.432 | 222 | 145 | 3 | 33 | 249 | 10 | 231 | 2.37e-30 | 114 |
| MS.gene050126.t1 | MTR_7g116920 | 32.683 | 205 | 133 | 3 | 50 | 249 | 9 | 213 | 4.33e-28 | 107 |
| MS.gene050126.t1 | MTR_7g076910 | 33.951 | 162 | 99 | 3 | 33 | 192 | 5 | 160 | 3.16e-18 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050126.t1 | AT4G27490 | 73.152 | 257 | 67 | 2 | 1 | 256 | 1 | 256 | 5.55e-143 | 401 |
| MS.gene050126.t1 | AT4G27490 | 73.152 | 257 | 67 | 2 | 1 | 256 | 1 | 256 | 5.55e-143 | 401 |
| MS.gene050126.t1 | AT4G27490 | 73.152 | 257 | 67 | 2 | 1 | 256 | 1 | 256 | 5.55e-143 | 401 |
| MS.gene050126.t1 | AT4G27490 | 77.358 | 212 | 47 | 1 | 45 | 256 | 4 | 214 | 7.53e-124 | 351 |
| MS.gene050126.t1 | AT4G27490 | 71.123 | 187 | 53 | 1 | 1 | 186 | 1 | 187 | 1.15e-95 | 279 |
| MS.gene050126.t1 | AT4G27490 | 71.123 | 187 | 53 | 1 | 1 | 186 | 1 | 187 | 1.15e-95 | 279 |
| MS.gene050126.t1 | AT4G27490 | 71.123 | 187 | 53 | 1 | 1 | 186 | 1 | 187 | 1.15e-95 | 279 |
| MS.gene050126.t1 | AT3G61620 | 31.532 | 222 | 147 | 3 | 33 | 249 | 10 | 231 | 6.76e-29 | 110 |
| MS.gene050126.t1 | AT3G61620 | 31.532 | 222 | 147 | 3 | 33 | 249 | 10 | 231 | 6.76e-29 | 110 |
| MS.gene050126.t1 | AT3G46210 | 33.742 | 163 | 98 | 5 | 33 | 192 | 5 | 160 | 1.28e-16 | 77.0 |
| MS.gene050126.t1 | AT3G46210 | 33.742 | 163 | 98 | 5 | 33 | 192 | 5 | 160 | 1.28e-16 | 77.0 |
| MS.gene050126.t1 | AT3G46210 | 33.742 | 163 | 98 | 5 | 33 | 192 | 5 | 160 | 1.28e-16 | 77.0 |
| MS.gene050126.t1 | AT3G46210 | 33.742 | 163 | 98 | 5 | 33 | 192 | 5 | 160 | 1.28e-16 | 77.0 |
| MS.gene050126.t1 | AT3G46210 | 33.742 | 163 | 98 | 5 | 33 | 192 | 5 | 160 | 1.28e-16 | 77.0 |
| MS.gene050126.t1 | AT3G46210 | 33.742 | 163 | 98 | 5 | 33 | 192 | 5 | 160 | 1.28e-16 | 77.0 |
| MS.gene050126.t1 | AT3G46210 | 33.742 | 163 | 98 | 5 | 33 | 192 | 5 | 160 | 1.28e-16 | 77.0 |
Find 66 sgRNAs with CRISPR-Local
Find 335 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCAGACCTCATTAATCTTT+GGG | 0.284021 | 4.1:+39546435 | None:intergenic |
| AGGCAGACCTCATTAATCTT+TGG | 0.302096 | 4.1:+39546434 | None:intergenic |
| TTTGGAGGGTGCAATAATAT+TGG | 0.333785 | 4.1:-39549388 | MS.gene050126:CDS |
| GGATCTGCTTATGCTGAGTT+TGG | 0.336443 | 4.1:-39549779 | MS.gene050126:CDS |
| ATTGCCTTCTTGCTCTCTCT+TGG | 0.344667 | 4.1:+39549617 | None:intergenic |
| TTCCATGCTTCATAAAGCTT+TGG | 0.379648 | 4.1:-39549406 | MS.gene050126:CDS |
| AAAACATCCACAGTGGTCTT+GGG | 0.383967 | 4.1:+39549357 | None:intergenic |
| ATCACCCAACTGACAGTTAC+CGG | 0.402501 | 4.1:-39546470 | MS.gene050126:CDS |
| AAAACCACGGCCATCGGGTC+GGG | 0.424672 | 4.1:+39550463 | None:intergenic |
| TAATATACCTGTCCACGAAC+TGG | 0.433563 | 4.1:+39549536 | None:intergenic |
| CATCATTGATCCTATATTTG+AGG | 0.438557 | 4.1:-39546549 | MS.gene050126:CDS |
| GGTGCTGTGAATGCTGCATC+AGG | 0.440274 | 4.1:-39549800 | MS.gene050126:CDS |
| GCAGGGGATGCAGCTGTGCT+TGG | 0.440538 | 4.1:-39545954 | MS.gene050126:intron |
| CTAGCAACCGATATGACAAC+TGG | 0.441517 | 4.1:+39547160 | None:intergenic |
| CATGCTTCATAAAGCTTTGG+AGG | 0.443233 | 4.1:-39549403 | MS.gene050126:CDS |
| TGCTTCTCAAGGAAGAAGAT+TGG | 0.451632 | 4.1:-39550487 | MS.gene050126:CDS |
| TACTCACCGTCTCTGACAAC+CGG | 0.464034 | 4.1:-39550524 | MS.gene050126:CDS |
| TTCAACTCCAGTTCGTGGAC+AGG | 0.464774 | 4.1:-39549543 | MS.gene050126:intron |
| ATCGGTTGCTAGTCTTGCCT+TGG | 0.469618 | 4.1:-39547149 | MS.gene050126:CDS |
| GCAATGATGTACAGTGATAC+CGG | 0.472870 | 4.1:-39549599 | MS.gene050126:CDS |
| CAAAGCTTGCTAAGATTATG+AGG | 0.489962 | 4.1:-39545922 | MS.gene050126:CDS |
| TGGACCCGACCCGATGGCCG+TGG | 0.491907 | 4.1:-39550467 | MS.gene050126:CDS |
| TTGGGAATGGCCGGCAAAAG+TGG | 0.492601 | 4.1:-39550563 | None:intergenic |
| TAATCATTAAGCTTCCATCT+TGG | 0.496219 | 4.1:+39546516 | None:intergenic |
| CTGGTGAAAACCACGGCCAT+CGG | 0.497666 | 4.1:+39550457 | None:intergenic |
| TGGTGAAAACCACGGCCATC+GGG | 0.498963 | 4.1:+39550458 | None:intergenic |
| GCATGGAACTGTACTCTTTG+TGG | 0.499282 | 4.1:+39549421 | None:intergenic |
| TGATCTCCCAGTTGTCATAT+CGG | 0.507012 | 4.1:-39547167 | MS.gene050126:CDS |
| TTCGCCGGTAACTGTCAGTT+GGG | 0.515084 | 4.1:+39546466 | None:intergenic |
| AAGGTCATACATCAGTATTC+CGG | 0.520451 | 4.1:+39547120 | None:intergenic |
| TCACACAGATACAATGACTT+TGG | 0.523678 | 4.1:+39549751 | None:intergenic |
| AGTCTTGCCTTGGCAGATGC+CGG | 0.528894 | 4.1:-39547139 | MS.gene050126:CDS |
| CTCCAAAGCTTTATGAAGCA+TGG | 0.529663 | 4.1:+39549404 | None:intergenic |
| CTTTGGGGTGGACCATTCGC+CGG | 0.530416 | 4.1:+39546451 | None:intergenic |
| TAATGATTCCAGTCATGTCT+CGG | 0.532516 | 4.1:-39546581 | MS.gene050126:intron |
| GAGGAGGAAAACTGCCAAGA+TGG | 0.537446 | 4.1:-39546530 | MS.gene050126:CDS |
| AGAATCTGCTTCTGATGCAC+AGG | 0.537718 | 4.1:-39545888 | MS.gene050126:CDS |
| ACACCGCCGTTGGGAATGGC+CGG | 0.541283 | 4.1:-39550572 | None:intergenic |
| ATTCGCCGGTAACTGTCAGT+TGG | 0.542035 | 4.1:+39546465 | None:intergenic |
| AACATTGCAATTCAGACGCC+CGG | 0.543101 | 4.1:+39549580 | None:intergenic |
| TCTTCTTCCTTGAGAAGCAG+TGG | 0.551293 | 4.1:+39550491 | None:intergenic |
| GACCTCATTAATCTTTGGGG+TGG | 0.565409 | 4.1:+39546439 | None:intergenic |
| CGGCAAAAGTGGAACGACTC+CGG | 0.565948 | 4.1:-39550552 | MS.gene050126:CDS |
| AAAGAAACCACTGCTTCTCA+AGG | 0.571189 | 4.1:-39550498 | MS.gene050126:CDS |
| GAAGATTGGACCCGACCCGA+TGG | 0.573254 | 4.1:-39550473 | MS.gene050126:CDS |
| AAACATCCACAGTGGTCTTG+GGG | 0.573612 | 4.1:+39549358 | None:intergenic |
| ATGCTTCATAAAGCTTTGGA+GGG | 0.574268 | 4.1:-39549402 | MS.gene050126:CDS |
| GAAAACCACGGCCATCGGGT+CGG | 0.575843 | 4.1:+39550462 | None:intergenic |
| GCTTACAAGCGGGTCTACAC+TGG | 0.579283 | 4.1:+39550438 | None:intergenic |
| CAGTATTCCGGCATCTGCCA+AGG | 0.585424 | 4.1:+39547132 | None:intergenic |
| CCTTGTCGCCTCAGTTTCAG+TGG | 0.591419 | 4.1:-39547101 | MS.gene050126:intron |
| AATTCATACCACTGAAACTG+AGG | 0.596309 | 4.1:+39547093 | None:intergenic |
| CAATGATGTACAGTGATACC+GGG | 0.601901 | 4.1:-39549598 | MS.gene050126:CDS |
| AACTGACAGTTACCGGCGAA+TGG | 0.609296 | 4.1:-39546463 | MS.gene050126:CDS |
| CATTGATCCTATATTTGAGG+AGG | 0.610912 | 4.1:-39546546 | MS.gene050126:CDS |
| CCACTGAAACTGAGGCGACA+AGG | 0.615029 | 4.1:+39547101 | None:intergenic |
| GCAGACCTCATTAATCTTTG+GGG | 0.622228 | 4.1:+39546436 | None:intergenic |
| CAAATATAGGATCAATGATG+AGG | 0.630746 | 4.1:+39546552 | None:intergenic |
| GTCCACCCCAAAGATTAATG+AGG | 0.632706 | 4.1:-39546441 | MS.gene050126:intron |
| TGGGTGATTTCATAGCGAGA+AGG | 0.637919 | 4.1:+39546485 | None:intergenic |
| AGAGACGGTGAGTATGTCGC+CGG | 0.644092 | 4.1:+39550533 | None:intergenic |
| TGGGCCAAGAGAGAGCAAGA+AGG | 0.650542 | 4.1:-39549621 | MS.gene050126:CDS |
| GCATTGGTGCTGGAATCTAG+TGG | 0.655397 | 4.1:-39549333 | MS.gene050126:CDS |
| GTCTACACTGGTGAAAACCA+CGG | 0.671219 | 4.1:+39550450 | None:intergenic |
| TAGCAACCGATATGACAACT+GGG | 0.691620 | 4.1:+39547161 | None:intergenic |
| TTCATTCCCCAAGACCACTG+TGG | 0.717363 | 4.1:-39549364 | MS.gene050126:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTAACTAAATGAAAATA+TGG | + | chr4.1:39547383-39547402 | None:intergenic | 10.0% |
| !!! | AATTTATTTAATATTTTGAG+AGG | + | chr4.1:39548592-39548611 | None:intergenic | 10.0% |
| !!! | ATTTATTTAATATTTTGAGA+GGG | + | chr4.1:39548591-39548610 | None:intergenic | 10.0% |
| !!! | TATACTATTGATAATATATA+CGG | - | chr4.1:39548731-39548750 | MS.gene050126:intron | 10.0% |
| !!! | TTTTTTTTTTATGTTTGAAA+CGG | - | chr4.1:39550175-39550194 | MS.gene050126:intron | 10.0% |
| !! | AAAATAACCAAGATATAATA+AGG | + | chr4.1:39546949-39546968 | None:intergenic | 15.0% |
| !! | AAATATAAAAATCAATCAGT+CGG | - | chr4.1:39550115-39550134 | MS.gene050126:intron | 15.0% |
| !! | AATAGTATATTAATTTCGTT+TGG | + | chr4.1:39548720-39548739 | None:intergenic | 15.0% |
| !! | CTTCAAAATATTAAGTATTA+CGG | + | chr4.1:39550236-39550255 | None:intergenic | 15.0% |
| !! | GTAAATTAAAAACTTGAAAT+AGG | + | chr4.1:39550062-39550081 | None:intergenic | 15.0% |
| !! | TAACTTAATTTATATAGCAA+AGG | + | chr4.1:39549012-39549031 | None:intergenic | 15.0% |
| !! | TTCAAGAATAGTTTAAAAAT+GGG | + | chr4.1:39549424-39549443 | None:intergenic | 15.0% |
| !! | TTTCAAGAATAGTTTAAAAA+TGG | + | chr4.1:39549425-39549444 | None:intergenic | 15.0% |
| !!! | AAATTTTAAGGATTAAAATG+TGG | - | chr4.1:39547192-39547211 | MS.gene050126:intron | 15.0% |
| !!! | ATCATTTTGTAGATTTTTAT+GGG | - | chr4.1:39548984-39549003 | MS.gene050126:intron | 15.0% |
| !!! | CAATTTACTTTATTTTATTG+CGG | + | chr4.1:39550397-39550416 | None:intergenic | 15.0% |
| !!! | TCATTGTTATTATTATTCTT+CGG | - | chr4.1:39546062-39546081 | MS.gene050126:intron | 15.0% |
| !!! | TTTGCTATATAAATTAAGTT+AGG | - | chr4.1:39549011-39549030 | MS.gene050126:intron | 15.0% |
| !! | AAGAAGATAAATATGATGAA+GGG | - | chr4.1:39548467-39548486 | MS.gene050126:intron | 20.0% |
| !! | AATAGTAGAATATTCAATGT+TGG | - | chr4.1:39548541-39548560 | MS.gene050126:intron | 20.0% |
| !! | AATATCAACTACAAAAAATG+TGG | - | chr4.1:39547217-39547236 | MS.gene050126:intron | 20.0% |
| !! | AATATCTTATATCTCAAGTT+AGG | - | chr4.1:39546980-39546999 | MS.gene050126:intron | 20.0% |
| !! | ATATCTTATATCTCAAGTTA+GGG | - | chr4.1:39546981-39547000 | MS.gene050126:intron | 20.0% |
| !! | ATCATGCAAAAATATTTCTT+TGG | - | chr4.1:39549087-39549106 | MS.gene050126:intron | 20.0% |
| !! | TATAGTTGAATTACTATCAT+AGG | - | chr4.1:39547564-39547583 | MS.gene050126:intron | 20.0% |
| !! | TATGAAGAAGTAATTTAAAG+AGG | + | chr4.1:39549530-39549549 | None:intergenic | 20.0% |
| !! | TTTAAATTAAATTGCAACTC+TGG | + | chr4.1:39549171-39549190 | None:intergenic | 20.0% |
| !!! | ATTTTACAAAACAGAAATCT+CGG | + | chr4.1:39547609-39547628 | None:intergenic | 20.0% |
| !!! | CATCATTTTGTAGATTTTTA+TGG | - | chr4.1:39548983-39549002 | MS.gene050126:intron | 20.0% |
| !!! | CATTGTTATTATTATTCTTC+GGG | - | chr4.1:39546063-39546082 | MS.gene050126:intron | 20.0% |
| !!! | TTATTTTCTCCCAAATTTTA+GGG | + | chr4.1:39547971-39547990 | None:intergenic | 20.0% |
| ! | AAGAATAGTTTAAAAATGGG+AGG | + | chr4.1:39549421-39549440 | None:intergenic | 25.0% |
| ! | AAGGATCATATTCAATATTG+TGG | - | chr4.1:39549142-39549161 | MS.gene050126:intron | 25.0% |
| ! | ACCTATAAAAAGAACACATT+AGG | + | chr4.1:39546789-39546808 | None:intergenic | 25.0% |
| ! | ATCAACCAATAAAAATGACA+AGG | + | chr4.1:39549646-39549665 | None:intergenic | 25.0% |
| ! | ATTAAAAAAAGTTGGAGAAC+AGG | + | chr4.1:39550020-39550039 | None:intergenic | 25.0% |
| ! | CATTTAGTTAATTAGTCATG+AGG | - | chr4.1:39547389-39547408 | MS.gene050126:intron | 25.0% |
| ! | GAAGAAGATAAATATGATGA+AGG | - | chr4.1:39548466-39548485 | MS.gene050126:intron | 25.0% |
| ! | TTACAAATATCTAGATACCA+AGG | + | chr4.1:39550356-39550375 | None:intergenic | 25.0% |
| ! | TTTATTATTGAATTTGTCGC+AGG | - | chr4.1:39549241-39549260 | MS.gene050126:intron | 25.0% |
| ! | TTTCGTTATCCCTAAAATTT+GGG | - | chr4.1:39547959-39547978 | MS.gene050126:intron | 25.0% |
| ! | TTTCTGGATTTATTAATGCT+AGG | - | chr4.1:39549667-39549686 | MS.gene050126:intron | 25.0% |
| ! | TTTGACTCCTTATTATATCT+TGG | - | chr4.1:39546939-39546958 | MS.gene050126:intron | 25.0% |
| !! | ATGTGTTCTTTTTATAGGTT+TGG | - | chr4.1:39546790-39546809 | MS.gene050126:intron | 25.0% |
| !! | ATTTCATGTTTGTAGTTTTC+AGG | - | chr4.1:39546605-39546624 | MS.gene050126:intron | 25.0% |
| !! | CTATTGATAATATATACGGA+CGG | - | chr4.1:39548735-39548754 | MS.gene050126:intron | 25.0% |
| !! | TAACAAGGCTTTTTGAATTA+TGG | - | chr4.1:39550205-39550224 | MS.gene050126:intron | 25.0% |
| !! | TATTGATAATATATACGGAC+GGG | - | chr4.1:39548736-39548755 | MS.gene050126:intron | 25.0% |
| !! | TGGATAGGTTAGAAATTTTA+AGG | - | chr4.1:39547180-39547199 | MS.gene050126:intron | 25.0% |
| !! | TGTGTTCTTTTTATAGGTTT+GGG | - | chr4.1:39546791-39546810 | MS.gene050126:intron | 25.0% |
| !!! | AACCTTTTTGTTTAAAACCT+TGG | - | chr4.1:39550336-39550355 | MS.gene050126:intron | 25.0% |
| !!! | AGTTTTTTAGATAGTTTGAC+TGG | - | chr4.1:39547893-39547912 | MS.gene050126:intron | 25.0% |
| !!! | GACAAACTTTTTTATGTGAT+TGG | - | chr4.1:39548655-39548674 | MS.gene050126:intron | 25.0% |
| !!! | GTTATTTTCTCCCAAATTTT+AGG | + | chr4.1:39547972-39547991 | None:intergenic | 25.0% |
| !!! | TACCAAGGTTTTAAACAAAA+AGG | + | chr4.1:39550341-39550360 | None:intergenic | 25.0% |
| !!! | TCAAGTTTTTAATTTACCTC+AGG | - | chr4.1:39550065-39550084 | MS.gene050126:intron | 25.0% |
| !!! | TTTTTATTGGTTGATCTTTC+TGG | - | chr4.1:39549651-39549670 | MS.gene050126:intron | 25.0% |
| AAGATTATTGCAAGACTTGT+TGG | - | chr4.1:39547500-39547519 | MS.gene050126:intron | 30.0% | |
| ACAGTTTAACAAGCATTTCA+AGG | + | chr4.1:39549572-39549591 | None:intergenic | 30.0% | |
| ACTCACCTAGAATAAAATGA+AGG | - | chr4.1:39547448-39547467 | MS.gene050126:intron | 30.0% | |
| ATAGACTTCTTGCAACAAAA+AGG | + | chr4.1:39547848-39547867 | None:intergenic | 30.0% | |
| ATTATCGTGAATAATAGGAC+TGG | + | chr4.1:39548925-39548944 | None:intergenic | 30.0% | |
| CAAATATAGGATCAATGATG+AGG | + | chr4.1:39549882-39549901 | None:intergenic | 30.0% | |
| CAATGCACAACAAATATAGA+TGG | - | chr4.1:39550420-39550439 | MS.gene050126:intron | 30.0% | |
| CAGCTATTATCGTGAATAAT+AGG | + | chr4.1:39548930-39548949 | None:intergenic | 30.0% | |
| CATCATTGATCCTATATTTG+AGG | - | chr4.1:39549882-39549901 | MS.gene050126:intron | 30.0% | |
| CATGCCTTCAATTAAGTATT+CGG | + | chr4.1:39546412-39546431 | None:intergenic | 30.0% | |
| CTCACCTAGAATAAAATGAA+GGG | - | chr4.1:39547449-39547468 | MS.gene050126:intron | 30.0% | |
| CTTTCGTTATCCCTAAAATT+TGG | - | chr4.1:39547958-39547977 | MS.gene050126:intron | 30.0% | |
| GACAAAATGAGATTATCACA+AGG | - | chr4.1:39549712-39549731 | MS.gene050126:intron | 30.0% | |
| GACATAACCGTGTAAAAAAT+CGG | + | chr4.1:39548175-39548194 | None:intergenic | 30.0% | |
| GATCATATTCAATATTGTGG+AGG | - | chr4.1:39549145-39549164 | MS.gene050126:intron | 30.0% | |
| GATCCATAGTATAGATTATG+TGG | - | chr4.1:39547743-39547762 | MS.gene050126:intron | 30.0% | |
| GCAAAACTGTATTACGAAAT+AGG | - | chr4.1:39548385-39548404 | MS.gene050126:intron | 30.0% | |
| GCAATTACCAGATAAAAACA+CGG | + | chr4.1:39547305-39547324 | None:intergenic | 30.0% | |
| TAACATATCCTGTATGTACT+TGG | + | chr4.1:39548054-39548073 | None:intergenic | 30.0% | |
| TAATCATTAAGCTTCCATCT+TGG | + | chr4.1:39549918-39549937 | None:intergenic | 30.0% | |
| TAATTGTACAAACTAAGCAG+TGG | - | chr4.1:39549117-39549136 | MS.gene050126:intron | 30.0% | |
| TAGAATATTCAATGTTGGAG+TGG | - | chr4.1:39548546-39548565 | MS.gene050126:intron | 30.0% | |
| TCACCTAGAATAAAATGAAG+GGG | - | chr4.1:39547450-39547469 | MS.gene050126:intron | 30.0% | |
| TCTTGCAATAATCTTCACTA+AGG | + | chr4.1:39547495-39547514 | None:intergenic | 30.0% | |
| TGAAAGACTATTATAGGAAG+AGG | - | chr4.1:39547692-39547711 | MS.gene050126:intron | 30.0% | |
| TTAGTGTATTCCAAGTTGTA+AGG | - | chr4.1:39547661-39547680 | MS.gene050126:intron | 30.0% | |
| TTGAACATCAGTTGTTGAAA+GGG | + | chr4.1:39547996-39548015 | None:intergenic | 30.0% | |
| TTGACAAGTTAATAGATCTG+CGG | - | chr4.1:39548680-39548699 | MS.gene050126:intron | 30.0% | |
| TTTGAACATCAGTTGTTGAA+AGG | + | chr4.1:39547997-39548016 | None:intergenic | 30.0% | |
| ! | CTGTTTCTTTATTTATTCCG+TGG | - | chr4.1:39549588-39549607 | MS.gene050126:CDS | 30.0% |
| ! | GAAAGTTACTGTGATGTTTT+TGG | + | chr4.1:39548323-39548342 | None:intergenic | 30.0% |
| ! | GCCTAATGTGTTCTTTTTAT+AGG | - | chr4.1:39546785-39546804 | MS.gene050126:intron | 30.0% |
| ! | TAGACACAATCATTTGTTGA+AGG | - | chr4.1:39548357-39548376 | MS.gene050126:intron | 30.0% |
| !! | AATATTTTGAGAGGGTCAAT+GGG | + | chr4.1:39548583-39548602 | None:intergenic | 30.0% |
| !! | AATTTGTGCCTTGGTTTTTA+GGG | - | chr4.1:39549384-39549403 | MS.gene050126:CDS | 30.0% |
| !! | CATAGTCATATTGCTTTTGA+TGG | - | chr4.1:39547160-39547179 | MS.gene050126:CDS | 30.0% |
| !! | TAATATTTTGAGAGGGTCAA+TGG | + | chr4.1:39548584-39548603 | None:intergenic | 30.0% |
| !! | TAATTTCGTTTGGCTTTACT+AGG | + | chr4.1:39548710-39548729 | None:intergenic | 30.0% |
| !! | TAATTTGTGCCTTGGTTTTT+AGG | - | chr4.1:39549383-39549402 | MS.gene050126:CDS | 30.0% |
| !! | TCATATTGCTTTTGATGGAT+AGG | - | chr4.1:39547165-39547184 | MS.gene050126:CDS | 30.0% |
| !! | TTGTTTACCGTGTTTTTATC+TGG | - | chr4.1:39547295-39547314 | MS.gene050126:intron | 30.0% |
| !!! | GATTTTTTACACGGTTATGT+CGG | - | chr4.1:39548174-39548193 | MS.gene050126:intron | 30.0% |
| !!! | TTTGGCCTTGTCATTTTTAT+TGG | - | chr4.1:39549638-39549657 | MS.gene050126:intron | 30.0% |
| AACAAGCATTTCAAGGCTAT+GGG | + | chr4.1:39549565-39549584 | None:intergenic | 35.0% | |
| AAGGTCATACATCAGTATTC+CGG | + | chr4.1:39549314-39549333 | None:intergenic | 35.0% | |
| AAGGTTTACAACAGCAATCA+AGG | + | chr4.1:39550322-39550341 | None:intergenic | 35.0% | |
| AATTCATACCACTGAAACTG+AGG | + | chr4.1:39549341-39549360 | None:intergenic | 35.0% | |
| ACACGGCTTTCAATATGAAT+TGG | + | chr4.1:39546436-39546455 | None:intergenic | 35.0% | |
| ACTTGAGATAACATGATGCA+GGG | - | chr4.1:39548441-39548460 | MS.gene050126:intron | 35.0% | |
| AGATATAGCCAAGTACATAC+AGG | - | chr4.1:39548043-39548062 | MS.gene050126:intron | 35.0% | |
| AGGGAAGAAAAGATAGTAGT+TGG | - | chr4.1:39548486-39548505 | MS.gene050126:intron | 35.0% | |
| ATAATGTGCACATGAGTTCA+TGG | - | chr4.1:39546159-39546178 | MS.gene050126:intron | 35.0% | |
| ATACTTCAATCAGCATCATG+AGG | - | chr4.1:39546736-39546755 | MS.gene050126:intron | 35.0% | |
| ATGTCGGATTTCGGTTTAAT+CGG | - | chr4.1:39548190-39548209 | MS.gene050126:intron | 35.0% | |
| ATTGCAATAATCCCCTTCTA+GGG | - | chr4.1:39547790-39547809 | MS.gene050126:intron | 35.0% | |
| CACCTAGAATAAAATGAAGG+GGG | - | chr4.1:39547451-39547470 | MS.gene050126:intron | 35.0% | |
| CATTGATCCTATATTTGAGG+AGG | - | chr4.1:39549885-39549904 | MS.gene050126:intron | 35.0% | |
| CTGCCACATAATCTATACTA+TGG | + | chr4.1:39547749-39547768 | None:intergenic | 35.0% | |
| CTGGTGCAAAGTAAAAACAT+TGG | + | chr4.1:39549491-39549510 | None:intergenic | 35.0% | |
| GAGCTTATCACAAAAACAAG+TGG | + | chr4.1:39548630-39548649 | None:intergenic | 35.0% | |
| GTACTTGGCTATATCTTTCA+AGG | + | chr4.1:39548039-39548058 | None:intergenic | 35.0% | |
| GTCATATCATGTGTTTGTCT+TGG | - | chr4.1:39546565-39546584 | MS.gene050126:CDS | 35.0% | |
| TAACAAGCATTTCAAGGCTA+TGG | + | chr4.1:39549566-39549585 | None:intergenic | 35.0% | |
| TAACCGTGTAAAAAATCGGA+CGG | + | chr4.1:39548171-39548190 | None:intergenic | 35.0% | |
| TAATGATTCCAGTCATGTCT+CGG | - | chr4.1:39549850-39549869 | MS.gene050126:intron | 35.0% | |
| TCACACAGATACAATGACTT+TGG | + | chr4.1:39546683-39546702 | None:intergenic | 35.0% | |
| TCGGTATTAGATATTGGACA+CGG | + | chr4.1:39546453-39546472 | None:intergenic | 35.0% | |
| TGAACATCAGTTGTTGAAAG+GGG | + | chr4.1:39547995-39548014 | None:intergenic | 35.0% | |
| TGCACCGAATACTTAATTGA+AGG | - | chr4.1:39546405-39546424 | MS.gene050126:intron | 35.0% | |
| TTACGTGTAACTACATGTGT+CGG | + | chr4.1:39546472-39546491 | None:intergenic | 35.0% | |
| TTCCATGCTTCATAAAGCTT+TGG | - | chr4.1:39547025-39547044 | MS.gene050126:intron | 35.0% | |
| TTTCAAGGAATCCTTGTGTT+AGG | + | chr4.1:39548024-39548043 | None:intergenic | 35.0% | |
| ! | AACCCCCTTCATTTTATTCT+AGG | + | chr4.1:39547456-39547475 | None:intergenic | 35.0% |
| ! | AAGCAGTGGTTTCTTTTTAC+CGG | + | chr4.1:39545929-39545948 | None:intergenic | 35.0% |
| ! | AGTCTATTAGCTTCTGTGTA+AGG | - | chr4.1:39547861-39547880 | MS.gene050126:intron | 35.0% |
| ! | ATAATATATACGGACGGGTT+CGG | - | chr4.1:39548741-39548760 | MS.gene050126:intron | 35.0% |
| ! | ATTCTCTGTAATTTGTGCCT+TGG | - | chr4.1:39549375-39549394 | MS.gene050126:CDS | 35.0% |
| ! | CAGTTTTCCTCCTCAAATAT+AGG | + | chr4.1:39549895-39549914 | None:intergenic | 35.0% |
| ! | CATGTGTCGGTATTAGATAT+TGG | + | chr4.1:39546459-39546478 | None:intergenic | 35.0% |
| ! | CTAATTGTTGCTATTCTTGC+TGG | + | chr4.1:39548294-39548313 | None:intergenic | 35.0% |
| ! | GATATGTTATTTACTAGCGC+TGG | - | chr4.1:39548065-39548084 | MS.gene050126:intron | 35.0% |
| ! | TTTGGAGGGTGCAATAATAT+TGG | - | chr4.1:39547043-39547062 | MS.gene050126:intron | 35.0% |
| !! | AGGCACTGAAAGACTATTAT+AGG | - | chr4.1:39547686-39547705 | MS.gene050126:intron | 35.0% |
| !! | ATGCTTCATAAAGCTTTGGA+GGG | - | chr4.1:39547029-39547048 | MS.gene050126:intron | 35.0% |
| !! | ATGTTTGTAGTTTTCAGGAC+TGG | - | chr4.1:39546610-39546629 | MS.gene050126:intron | 35.0% |
| !! | CAAAGCTTGCTAAGATTATG+AGG | - | chr4.1:39550509-39550528 | MS.gene050126:CDS | 35.0% |
| !! | TGAAACGGAAGTATCTAACA+AGG | - | chr4.1:39550190-39550209 | MS.gene050126:intron | 35.0% |
| !! | TTGGTGACGATAAGTTAATG+AGG | - | chr4.1:39548505-39548524 | MS.gene050126:intron | 35.0% |
| !!! | TTGCTGGTGATTTTTTTCTC+TGG | + | chr4.1:39548278-39548297 | None:intergenic | 35.0% |
| AAAAACATCCACAGTGGTCT+TGG | + | chr4.1:39547078-39547097 | None:intergenic | 40.0% | |
| AAAACATCCACAGTGGTCTT+GGG | + | chr4.1:39547077-39547096 | None:intergenic | 40.0% | |
| AAAGAAACCACTGCTTCTCA+AGG | - | chr4.1:39545933-39545952 | MS.gene050126:CDS | 40.0% | |
| AACCCTTCTTTACCCAAGTT+TGG | - | chr4.1:39548806-39548825 | MS.gene050126:intron | 40.0% | |
| AACTACCTTACTCCCTAGAA+GGG | + | chr4.1:39547805-39547824 | None:intergenic | 40.0% | |
| AATCAAGGCTGCAACATCAT+GGG | + | chr4.1:39550307-39550326 | None:intergenic | 40.0% | |
| AATTGAGGTCACATTAGCTG+CGG | + | chr4.1:39550263-39550282 | None:intergenic | 40.0% | |
| ACCAAACCCTAAAATGCTAG+AGG | - | chr4.1:39546299-39546318 | MS.gene050126:intron | 40.0% | |
| AGAGTGATGAAGCTTACAAG+CGG | + | chr4.1:39546007-39546026 | None:intergenic | 40.0% | |
| AGCTAATGTGACCTCAATTG+CGG | - | chr4.1:39550264-39550283 | MS.gene050126:intron | 40.0% | |
| AGGCAGACCTCATTAATCTT+TGG | + | chr4.1:39550000-39550019 | None:intergenic | 40.0% | |
| AGGCATAAAGTGTGTGATTC+TGG | + | chr4.1:39549510-39549529 | None:intergenic | 40.0% | |
| ATGAAGGAATAGTTCATGGC+AGG | + | chr4.1:39549764-39549783 | None:intergenic | 40.0% | |
| ATGCTATCGTGCATAGAGTA+TGG | + | chr4.1:39549617-39549636 | None:intergenic | 40.0% | |
| CAATGATGTACAGTGATACC+GGG | - | chr4.1:39546833-39546852 | MS.gene050126:intron | 40.0% | |
| CAATGCAAAAACATCCACAG+TGG | + | chr4.1:39547084-39547103 | None:intergenic | 40.0% | |
| CAATGTTGGAGTGGAAAGAA+TGG | - | chr4.1:39548555-39548574 | MS.gene050126:intron | 40.0% | |
| CACATGATATGACACTGACA+TGG | + | chr4.1:39546558-39546577 | None:intergenic | 40.0% | |
| CACTTGTGAAAGAAGATGGT+AGG | - | chr4.1:39548413-39548432 | MS.gene050126:intron | 40.0% | |
| GAACATCAGTTGTTGAAAGG+GGG | + | chr4.1:39547994-39548013 | None:intergenic | 40.0% | |
| GACCAAACTTGGGTAAAGAA+GGG | + | chr4.1:39548811-39548830 | None:intergenic | 40.0% | |
| GACTTGAGATAACATGATGC+AGG | - | chr4.1:39548440-39548459 | MS.gene050126:intron | 40.0% | |
| GATTGCAATAATCCCCTTCT+AGG | - | chr4.1:39547789-39547808 | MS.gene050126:intron | 40.0% | |
| GATTTCGGTTTAATCGGTGT+CGG | - | chr4.1:39548196-39548215 | MS.gene050126:intron | 40.0% | |
| GCAAAGCTCTCATTGACATT+TGG | - | chr4.1:39550444-39550463 | MS.gene050126:CDS | 40.0% | |
| GCAATGATGTACAGTGATAC+CGG | - | chr4.1:39546832-39546851 | MS.gene050126:intron | 40.0% | |
| GCAGACCTCATTAATCTTTG+GGG | + | chr4.1:39549998-39550017 | None:intergenic | 40.0% | |
| GGCAGACCTCATTAATCTTT+GGG | + | chr4.1:39549999-39550018 | None:intergenic | 40.0% | |
| GTTCAAAGAGTCCTAACACA+AGG | - | chr4.1:39548010-39548029 | MS.gene050126:intron | 40.0% | |
| TAACTACCTTACTCCCTAGA+AGG | + | chr4.1:39547806-39547825 | None:intergenic | 40.0% | |
| TAATATACCTGTCCACGAAC+TGG | + | chr4.1:39546898-39546917 | None:intergenic | 40.0% | |
| TACAAACTAAGCAGTGGTGA+AGG | - | chr4.1:39549123-39549142 | MS.gene050126:intron | 40.0% | |
| TACACGGTTATGTCGGATTT+CGG | - | chr4.1:39548181-39548200 | MS.gene050126:intron | 40.0% | |
| TACGTTGAGTTCACATGTGT+CGG | - | chr4.1:39546208-39546227 | MS.gene050126:intron | 40.0% | |
| TAGCAACCGATATGACAACT+GGG | + | chr4.1:39549273-39549292 | None:intergenic | 40.0% | |
| TATTGTGTTGGGGTCGTATT+GGG | - | chr4.1:39546231-39546250 | MS.gene050126:intron | 40.0% | |
| TCTATGCACGATAGCATGTT+TGG | - | chr4.1:39549620-39549639 | MS.gene050126:CDS | 40.0% | |
| TGAAGGAATAGTTCATGGCA+GGG | + | chr4.1:39549763-39549782 | None:intergenic | 40.0% | |
| TGAATTACTATCATAGGCGC+TGG | - | chr4.1:39547570-39547589 | MS.gene050126:intron | 40.0% | |
| TGACCAAACTTGGGTAAAGA+AGG | + | chr4.1:39548812-39548831 | None:intergenic | 40.0% | |
| TGATCTCCCAGTTGTCATAT+CGG | - | chr4.1:39549264-39549283 | MS.gene050126:intron | 40.0% | |
| TGCCATGAACTATTCCTTCA+TGG | - | chr4.1:39549763-39549782 | MS.gene050126:CDS | 40.0% | |
| TGCCATGAAGGAATAGTTCA+TGG | + | chr4.1:39549768-39549787 | None:intergenic | 40.0% | |
| TGCTTCTCAAGGAAGAAGAT+TGG | - | chr4.1:39545944-39545963 | MS.gene050126:CDS | 40.0% | |
| TGTAAAAAATCGGACGGAGA+TGG | + | chr4.1:39548165-39548184 | None:intergenic | 40.0% | |
| TTCAAGCACCCTAAAAACCA+AGG | + | chr4.1:39549395-39549414 | None:intergenic | 40.0% | |
| ! | ACATGTGTCGGTATTGTGTT+GGG | - | chr4.1:39546220-39546239 | MS.gene050126:intron | 40.0% |
| ! | ACATTTGGTTTCCTTCATGC+AGG | - | chr4.1:39550459-39550478 | MS.gene050126:CDS | 40.0% |
| ! | ACATTTTCAACTCCAGTTCG+TGG | - | chr4.1:39546883-39546902 | MS.gene050126:intron | 40.0% |
| ! | ATTTGGTTTCCTTCATGCAG+GGG | - | chr4.1:39550461-39550480 | MS.gene050126:CDS | 40.0% |
| ! | CATGCTTCATAAAGCTTTGG+AGG | - | chr4.1:39547028-39547047 | MS.gene050126:intron | 40.0% |
| ! | CATTTGGTTTCCTTCATGCA+GGG | - | chr4.1:39550460-39550479 | MS.gene050126:CDS | 40.0% |
| ! | CTCCAAAGCTTTATGAAGCA+TGG | + | chr4.1:39547030-39547049 | None:intergenic | 40.0% |
| ! | GAAGCACTTGTGAAAGAAGA+TGG | - | chr4.1:39548409-39548428 | MS.gene050126:intron | 40.0% |
| ! | TAAAGAAGGGTTAGTACGGT+CGG | + | chr4.1:39548798-39548817 | None:intergenic | 40.0% |
| ! | TATTTACTAGCGCTGGACAT+CGG | - | chr4.1:39548072-39548091 | MS.gene050126:intron | 40.0% |
| ! | TGGGTAAAGAAGGGTTAGTA+CGG | + | chr4.1:39548802-39548821 | None:intergenic | 40.0% |
| ! | TTTAGATGGGTGGGTTTAAG+CGG | - | chr4.1:39548219-39548238 | MS.gene050126:intron | 40.0% |
| ! | TTTTCATGTCTCATACGAGC+TGG | + | chr4.1:39547534-39547553 | None:intergenic | 40.0% |
| !! | ATTGCAAGACTTGTTGGTCT+GGG | - | chr4.1:39547506-39547525 | MS.gene050126:intron | 40.0% |
| !! | CACTGTGGATGTTTTTGCAT+TGG | - | chr4.1:39547082-39547101 | MS.gene050126:intron | 40.0% |
| !! | GTATTCGGTGCAACATTTGT+CGG | + | chr4.1:39546397-39546416 | None:intergenic | 40.0% |
| !! | TAATAGCTGTTTTGCGCAAC+TGG | - | chr4.1:39548941-39548960 | MS.gene050126:intron | 40.0% |
| !! | TAATCGGTGTCGGTTTAGAT+GGG | - | chr4.1:39548206-39548225 | MS.gene050126:intron | 40.0% |
| !! | TATTGCAAGACTTGTTGGTC+TGG | - | chr4.1:39547505-39547524 | MS.gene050126:intron | 40.0% |
| !! | TTAATCGGTGTCGGTTTAGA+TGG | - | chr4.1:39548205-39548224 | MS.gene050126:intron | 40.0% |
| !! | TTTTTACCGGTTGTCAGAGA+CGG | + | chr4.1:39545916-39545935 | None:intergenic | 40.0% |
| !!! | TCTCCGTCCGATTTTTTACA+CGG | - | chr4.1:39548165-39548184 | MS.gene050126:intron | 40.0% |
| AACATTGCAATTCAGACGCC+CGG | + | chr4.1:39546854-39546873 | None:intergenic | 45.0% | |
| ACCTCTTCGCATTAACGCAA+GGG | + | chr4.1:39547349-39547368 | None:intergenic | 45.0% | |
| ACTACCTTACTCCCTAGAAG+GGG | + | chr4.1:39547804-39547823 | None:intergenic | 45.0% | |
| AGAATCTGCTTCTGATGCAC+AGG | - | chr4.1:39550543-39550562 | MS.gene050126:CDS | 45.0% | |
| ATCACCCAACTGACAGTTAC+CGG | - | chr4.1:39549961-39549980 | MS.gene050126:intron | 45.0% | |
| ATTGCCTTCTTGCTCTCTCT+TGG | + | chr4.1:39546817-39546836 | None:intergenic | 45.0% | |
| ATTGTGTTGGGGTCGTATTG+GGG | - | chr4.1:39546232-39546251 | MS.gene050126:intron | 45.0% | |
| CAAAGTGAGACAGTATCCTG+AGG | + | chr4.1:39550084-39550103 | None:intergenic | 45.0% | |
| CAATCAAGGCTGCAACATCA+TGG | + | chr4.1:39550308-39550327 | None:intergenic | 45.0% | |
| CCTAAAATGCTAGAGGCTAG+CGG | - | chr4.1:39546306-39546325 | MS.gene050126:intron | 45.0% | |
| CTAAAATGCTAGAGGCTAGC+GGG | - | chr4.1:39546307-39546326 | MS.gene050126:intron | 45.0% | |
| CTAGCAACCGATATGACAAC+TGG | + | chr4.1:39549274-39549293 | None:intergenic | 45.0% | |
| GAAGGGGGTTTGAATCTAAC+TGG | - | chr4.1:39547466-39547485 | MS.gene050126:intron | 45.0% | |
| GAGTGATGAAGCTTACAAGC+GGG | + | chr4.1:39546006-39546025 | None:intergenic | 45.0% | |
| GATTGCAACCTAGCTGCATA+TGG | - | chr4.1:39547421-39547440 | MS.gene050126:intron | 45.0% | |
| GCAAAACAAGCATGCCATGA+AGG | + | chr4.1:39549780-39549799 | None:intergenic | 45.0% | |
| GCATGGAACTGTACTCTTTG+TGG | + | chr4.1:39547013-39547032 | None:intergenic | 45.0% | |
| GGATCTGCTTATGCTGAGTT+TGG | - | chr4.1:39546652-39546671 | MS.gene050126:intron | 45.0% | |
| GTATTCCAAGTTGTAAGGCG+AGG | - | chr4.1:39547666-39547685 | MS.gene050126:intron | 45.0% | |
| GTATTGTGTTGGGGTCGTAT+TGG | - | chr4.1:39546230-39546249 | MS.gene050126:intron | 45.0% | |
| GTCCACCCCAAAGATTAATG+AGG | - | chr4.1:39549990-39550009 | MS.gene050126:intron | 45.0% | |
| GTCTACACTGGTGAAAACCA+CGG | + | chr4.1:39545984-39546003 | None:intergenic | 45.0% | |
| TACCTCTTCGCATTAACGCA+AGG | + | chr4.1:39547350-39547369 | None:intergenic | 45.0% | |
| TCTTCTTCCTTGAGAAGCAG+TGG | + | chr4.1:39545943-39545962 | None:intergenic | 45.0% | |
| TGCATAGAGTATGGTCTCCA+CGG | + | chr4.1:39549608-39549627 | None:intergenic | 45.0% | |
| TGCTATCACAACCGCAATTG+AGG | + | chr4.1:39550278-39550297 | None:intergenic | 45.0% | |
| TGGGTGATTTCATAGCGAGA+AGG | + | chr4.1:39549949-39549968 | None:intergenic | 45.0% | |
| ! | AAACATCCACAGTGGTCTTG+GGG | + | chr4.1:39547076-39547095 | None:intergenic | 45.0% |
| ! | CACATGTGTCGGTATTGTGT+TGG | - | chr4.1:39546219-39546238 | MS.gene050126:intron | 45.0% |
| ! | CATGTGTCGGTATTGTGTTG+GGG | - | chr4.1:39546221-39546240 | MS.gene050126:intron | 45.0% |
| ! | GACACGTAGACACTCTGAAA+TGG | + | chr4.1:39546536-39546555 | None:intergenic | 45.0% |
| ! | GACCTCATTAATCTTTGGGG+TGG | + | chr4.1:39549995-39550014 | None:intergenic | 45.0% |
| ! | TAATCCCCTTCTAGGGAGTA+AGG | - | chr4.1:39547797-39547816 | MS.gene050126:intron | 45.0% |
| ! | TTAGATGGGTGGGTTTAAGC+GGG | - | chr4.1:39548220-39548239 | MS.gene050126:intron | 45.0% |
| !! | CGCTAGCCTCTAGCATTTTA+GGG | + | chr4.1:39546308-39546327 | None:intergenic | 45.0% |
| !! | GGATGTTTTTGCATTGGTGC+TGG | - | chr4.1:39547088-39547107 | MS.gene050126:intron | 45.0% |
| !!! | GCCTCTAGCATTTTAGGGTT+TGG | + | chr4.1:39546303-39546322 | None:intergenic | 45.0% |
| !! | AAATAAATTAATTAAATACT+TGG | - | chr4.1:39548603-39548622 | MS.gene050126:intron | 5.0% |
| !! | ATAAAAATATTAAAAAAAGT+TGG | + | chr4.1:39550028-39550047 | None:intergenic | 5.0% |
| AACTGACAGTTACCGGCGAA+TGG | - | chr4.1:39549968-39549987 | MS.gene050126:intron | 50.0% | |
| ATTCGCCGGTAACTGTCAGT+TGG | + | chr4.1:39549969-39549988 | None:intergenic | 50.0% | |
| GAGGAGGAAAACTGCCAAGA+TGG | - | chr4.1:39549901-39549920 | MS.gene050126:intron | 50.0% | |
| GAGTGCATCCATATGCAGCT+AGG | + | chr4.1:39547432-39547451 | None:intergenic | 50.0% | |
| TACTCACCGTCTCTGACAAC+CGG | - | chr4.1:39545907-39545926 | MS.gene050126:CDS | 50.0% | |
| TCCCTTGCGTTAATGCGAAG+AGG | - | chr4.1:39547345-39547364 | MS.gene050126:intron | 50.0% | |
| TGAAGCGGGTGACCAAACTT+GGG | + | chr4.1:39548821-39548840 | None:intergenic | 50.0% | |
| TTCAACTCCAGTTCGTGGAC+AGG | - | chr4.1:39546888-39546907 | MS.gene050126:intron | 50.0% | |
| TTCATTCCCCAAGACCACTG+TGG | - | chr4.1:39547067-39547086 | MS.gene050126:intron | 50.0% | |
| TTCGCCGGTAACTGTCAGTT+GGG | + | chr4.1:39549968-39549987 | None:intergenic | 50.0% | |
| TTGAAGCGGGTGACCAAACT+TGG | + | chr4.1:39548822-39548841 | None:intergenic | 50.0% | |
| TTTCCACCCATGGATTCCGT+CGG | + | chr4.1:39548134-39548153 | None:intergenic | 50.0% | |
| ! | GGCTGCAACATCATGGGTTT+TGG | + | chr4.1:39550301-39550320 | None:intergenic | 50.0% |
| !! | ATCGGTTGCTAGTCTTGCCT+TGG | - | chr4.1:39549282-39549301 | MS.gene050126:intron | 50.0% |
| !! | CCGCTAGCCTCTAGCATTTT+AGG | + | chr4.1:39546309-39546328 | None:intergenic | 50.0% |
| !! | GATGGATTATCCGAACCTGC+CGG | + | chr4.1:39548770-39548789 | None:intergenic | 50.0% |
| !! | GCATTGGTGCTGGAATCTAG+TGG | - | chr4.1:39547098-39547117 | MS.gene050126:intron | 50.0% |
| !! | GGTGTGACTTTTTCCACCCA+TGG | + | chr4.1:39548144-39548163 | None:intergenic | 50.0% |
| AATCCGACGGAATCCATGGG+TGG | - | chr4.1:39548128-39548147 | MS.gene050126:intron | 55.0% | |
| ACCCATGGATTCCGTCGGAT+TGG | + | chr4.1:39548129-39548148 | None:intergenic | 55.0% | |
| AGAGACGGTGAGTATGTCGC+CGG | + | chr4.1:39545901-39545920 | None:intergenic | 55.0% | |
| AGTCTTGCCTTGGCAGATGC+CGG | - | chr4.1:39549292-39549311 | MS.gene050126:intron | 55.0% | |
| CAGTATTCCGGCATCTGCCA+AGG | + | chr4.1:39549302-39549321 | None:intergenic | 55.0% | |
| CAGTGCCTCGCCTTACAACT+TGG | + | chr4.1:39547674-39547693 | None:intergenic | 55.0% | |
| CCACTGAAACTGAGGCGACA+AGG | + | chr4.1:39549333-39549352 | None:intergenic | 55.0% | |
| CCATGGATTCCGTCGGATTG+GGG | + | chr4.1:39548127-39548146 | None:intergenic | 55.0% | |
| CCCAATCCGACGGAATCCAT+GGG | - | chr4.1:39548125-39548144 | MS.gene050126:intron | 55.0% | |
| CCCATGGATTCCGTCGGATT+GGG | + | chr4.1:39548128-39548147 | None:intergenic | 55.0% | |
| CCTTGTCGCCTCAGTTTCAG+TGG | - | chr4.1:39549330-39549349 | MS.gene050126:intron | 55.0% | |
| CGGCAAAAGTGGAACGACTC+CGG | - | chr4.1:39545879-39545898 | MS.gene050126:CDS | 55.0% | |
| CTAGACACGCTGTGTTGCCA+TGG | - | chr4.1:39546266-39546285 | MS.gene050126:intron | 55.0% | |
| CTGGTGAAAACCACGGCCAT+CGG | + | chr4.1:39545977-39545996 | None:intergenic | 55.0% | |
| GAGAACGGGTCGGTTGAAAC+GGG | + | chr4.1:39548853-39548872 | None:intergenic | 55.0% | |
| GCTTACAAGCGGGTCTACAC+TGG | + | chr4.1:39545996-39546015 | None:intergenic | 55.0% | |
| GGAGAACGGGTCGGTTGAAA+CGG | + | chr4.1:39548854-39548873 | None:intergenic | 55.0% | |
| GGTGAAAACCCCCAATCCGA+CGG | - | chr4.1:39548115-39548134 | MS.gene050126:intron | 55.0% | |
| TGGGCCAAGAGAGAGCAAGA+AGG | - | chr4.1:39546810-39546829 | MS.gene050126:intron | 55.0% | |
| TGGTGAAAACCACGGCCATC+GGG | + | chr4.1:39545976-39545995 | None:intergenic | 55.0% | |
| TTAGTACGGTCGGTTGCGGA+TGG | + | chr4.1:39548788-39548807 | None:intergenic | 55.0% | |
| TTTCACCCGAAATCCGACCG+TGG | + | chr4.1:39548102-39548121 | None:intergenic | 55.0% | |
| ! | AGGGTTAGTACGGTCGGTTG+CGG | + | chr4.1:39548792-39548811 | None:intergenic | 55.0% |
| ! | CATGGATTCCGTCGGATTGG+GGG | + | chr4.1:39548126-39548145 | None:intergenic | 55.0% |
| ! | GGTGCTGTGAATGCTGCATC+AGG | - | chr4.1:39546631-39546650 | MS.gene050126:intron | 55.0% |
| ! | TACTAGCGCTGGACATCGGT+CGG | - | chr4.1:39548076-39548095 | MS.gene050126:intron | 55.0% |
| !! | AACGGGTTGGTCGGTTGAAG+CGG | + | chr4.1:39548836-39548855 | None:intergenic | 55.0% |
| !! | CGGAGTCGTTCCACTTTTGC+CGG | + | chr4.1:39545881-39545900 | None:intergenic | 55.0% |
| !! | CGGTGTCGGTTTAGATGGGT+GGG | - | chr4.1:39548210-39548229 | MS.gene050126:intron | 55.0% |
| !! | GTCGGTTGAAACGGGTTGGT+CGG | + | chr4.1:39548845-39548864 | None:intergenic | 55.0% |
| !! | GTTTGGTGTTACCGACGCCA+TGG | + | chr4.1:39546286-39546305 | None:intergenic | 55.0% |
| !! | TCGGTGTCGGTTTAGATGGG+TGG | - | chr4.1:39548209-39548228 | MS.gene050126:intron | 55.0% |
| AAAACCACGGCCATCGGGTC+GGG | + | chr4.1:39545971-39545990 | None:intergenic | 60.0% | |
| ACGCTGTGTTGCCATGGCGT+CGG | - | chr4.1:39546272-39546291 | MS.gene050126:intron | 60.0% | |
| ACGGGTCGGTTGAAACGGGT+TGG | + | chr4.1:39548849-39548868 | None:intergenic | 60.0% | |
| ATCGGGCAGTTTGGGTCGAG+CGG | - | chr4.1:39548888-39548907 | MS.gene050126:intron | 60.0% | |
| CAGCTGCATCCCCTGCATGA+AGG | + | chr4.1:39550473-39550492 | None:intergenic | 60.0% | |
| CCCCAATCCGACGGAATCCA+TGG | - | chr4.1:39548124-39548143 | MS.gene050126:intron | 60.0% | |
| CCTTGCGGATCGGGCAGTTT+GGG | - | chr4.1:39548880-39548899 | MS.gene050126:intron | 60.0% | |
| GAAAACCACGGCCATCGGGT+CGG | + | chr4.1:39545972-39545991 | None:intergenic | 60.0% | |
| GAAGATTGGACCCGACCCGA+TGG | - | chr4.1:39545958-39545977 | MS.gene050126:intron | 60.0% | |
| GGGGTCGTATTGGGGTCTGA+CGG | - | chr4.1:39546240-39546259 | MS.gene050126:intron | 60.0% | |
| TCAACCGACCCGTTCTCCGA+CGG | - | chr4.1:39548856-39548875 | MS.gene050126:intron | 60.0% | |
| ! | ATACGGACGGGTTCGGTTGC+CGG | - | chr4.1:39548748-39548767 | MS.gene050126:intron | 60.0% |
| !! | ACGGGTTGGTCGGTTGAAGC+GGG | + | chr4.1:39548835-39548854 | None:intergenic | 60.0% |
| !! | CTTTGGGGTGGACCATTCGC+CGG | + | chr4.1:39549983-39550002 | None:intergenic | 60.0% |
| CAACCGACCCGTTCTCCGAC+GGG | - | chr4.1:39548857-39548876 | MS.gene050126:intron | 65.0% | |
| CCCAAACTGCCCGATCCGCA+AGG | + | chr4.1:39548883-39548902 | None:intergenic | 65.0% | |
| GCAGGGGATGCAGCTGTGCT+TGG | - | chr4.1:39550477-39550496 | MS.gene050126:CDS | 65.0% | |
| GCCTTGCGGATCGGGCAGTT+TGG | - | chr4.1:39548879-39548898 | MS.gene050126:intron | 65.0% | |
| GGTCGGCCACGGTCGGATTT+CGG | - | chr4.1:39548093-39548112 | MS.gene050126:intron | 65.0% | |
| GTCGGCCACGGTCGGATTTC+GGG | - | chr4.1:39548094-39548113 | MS.gene050126:intron | 65.0% | |
| ! | GGTTCGGTTGCCGGCAGGTT+CGG | - | chr4.1:39548757-39548776 | MS.gene050126:intron | 65.0% |
| AGGCCCGTCGGAGAACGGGT+CGG | + | chr4.1:39548863-39548882 | None:intergenic | 70.0% | |
| CCGCAAGGCCCGTCGGAGAA+CGG | + | chr4.1:39548868-39548887 | None:intergenic | 70.0% | |
| CCGTTCTCCGACGGGCCTTG+CGG | - | chr4.1:39548865-39548884 | MS.gene050126:intron | 70.0% | |
| CGCAAGGCCCGTCGGAGAAC+GGG | + | chr4.1:39548867-39548886 | None:intergenic | 70.0% | |
| CGCTGGACATCGGTCGGCCA+CGG | - | chr4.1:39548082-39548101 | MS.gene050126:intron | 70.0% | |
| CTCCGACGGGCCTTGCGGAT+CGG | - | chr4.1:39548870-39548889 | MS.gene050126:intron | 70.0% | |
| GGACATCGGTCGGCCACGGT+CGG | - | chr4.1:39548086-39548105 | MS.gene050126:intron | 70.0% | |
| TCCGACGGGCCTTGCGGATC+GGG | - | chr4.1:39548871-39548890 | MS.gene050126:intron | 70.0% | |
| GCCCGATCCGCAAGGCCCGT+CGG | + | chr4.1:39548875-39548894 | None:intergenic | 75.0% | |
| TGGACCCGACCCGATGGCCG+TGG | - | chr4.1:39545964-39545983 | MS.gene050126:intron | 75.0% | |
| ! | GGACGGGTTCGGTTGCCGGC+AGG | - | chr4.1:39548752-39548771 | MS.gene050126:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 39545874 | 39550579 | 39545874 | ID=MS.gene050126 |
| chr4.1 | mRNA | 39545874 | 39550579 | 39545874 | ID=MS.gene050126.t1;Parent=MS.gene050126 |
| chr4.1 | exon | 39550444 | 39550579 | 39550444 | ID=MS.gene050126.t1.exon1;Parent=MS.gene050126.t1 |
| chr4.1 | CDS | 39550444 | 39550579 | 39550444 | ID=cds.MS.gene050126.t1;Parent=MS.gene050126.t1 |
| chr4.1 | exon | 39549755 | 39549833 | 39549755 | ID=MS.gene050126.t1.exon2;Parent=MS.gene050126.t1 |
| chr4.1 | CDS | 39549755 | 39549833 | 39549755 | ID=cds.MS.gene050126.t1;Parent=MS.gene050126.t1 |
| chr4.1 | exon | 39549544 | 39549646 | 39549544 | ID=MS.gene050126.t1.exon3;Parent=MS.gene050126.t1 |
| chr4.1 | CDS | 39549544 | 39549646 | 39549544 | ID=cds.MS.gene050126.t1;Parent=MS.gene050126.t1 |
| chr4.1 | exon | 39549331 | 39549451 | 39549331 | ID=MS.gene050126.t1.exon4;Parent=MS.gene050126.t1 |
| chr4.1 | CDS | 39549331 | 39549451 | 39549331 | ID=cds.MS.gene050126.t1;Parent=MS.gene050126.t1 |
| chr4.1 | exon | 39547102 | 39547190 | 39547102 | ID=MS.gene050126.t1.exon5;Parent=MS.gene050126.t1 |
| chr4.1 | CDS | 39547102 | 39547190 | 39547102 | ID=cds.MS.gene050126.t1;Parent=MS.gene050126.t1 |
| chr4.1 | exon | 39546442 | 39546591 | 39546442 | ID=MS.gene050126.t1.exon6;Parent=MS.gene050126.t1 |
| chr4.1 | CDS | 39546442 | 39546591 | 39546442 | ID=cds.MS.gene050126.t1;Parent=MS.gene050126.t1 |
| chr4.1 | exon | 39545874 | 39545972 | 39545874 | ID=MS.gene050126.t1.exon7;Parent=MS.gene050126.t1 |
| chr4.1 | CDS | 39545874 | 39545972 | 39545874 | ID=cds.MS.gene050126.t1;Parent=MS.gene050126.t1 |
| Gene Sequence |
| Protein sequence |
