Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050135.t1 | XP_004506043.1 | 75.8 | 194 | 25 | 7 | 1 | 179 | 359 | 545 | 1.30E-66 | 262.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050135.t1 | Q9SJ56 | 53.8 | 182 | 75 | 4 | 1 | 179 | 282 | 457 | 2.3e-45 | 183.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050135.t1 | A0A1S2YKJ2 | 75.8 | 194 | 25 | 7 | 1 | 179 | 359 | 545 | 9.0e-67 | 262.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene050135.t1 | TF | HB-BELL |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050135 | MS.gene050136 | 0.818149 | 2.28E-52 | -1.69E-46 |
| MS.gene050135 | MS.gene08680 | 0.807055 | 6.09E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050135.t1 | MTR_2g095050 | 65.079 | 189 | 50 | 6 | 1 | 179 | 329 | 511 | 7.04e-74 | 233 |
| MS.gene050135.t1 | MTR_4g019450 | 58.152 | 184 | 56 | 6 | 1 | 179 | 265 | 432 | 1.71e-61 | 200 |
| MS.gene050135.t1 | MTR_7g065050 | 56.906 | 181 | 63 | 5 | 1 | 179 | 210 | 377 | 5.98e-60 | 194 |
| MS.gene050135.t1 | MTR_7g106320 | 51.648 | 182 | 74 | 5 | 1 | 179 | 260 | 430 | 1.04e-53 | 181 |
| MS.gene050135.t1 | MTR_1g057790 | 52.632 | 171 | 67 | 5 | 1 | 168 | 248 | 407 | 2.72e-52 | 177 |
| MS.gene050135.t1 | MTR_5g018860 | 49.171 | 181 | 79 | 4 | 1 | 177 | 423 | 594 | 1.39e-51 | 176 |
| MS.gene050135.t1 | MTR_8g078480 | 50.538 | 186 | 74 | 5 | 1 | 179 | 474 | 648 | 1.94e-51 | 176 |
| MS.gene050135.t1 | MTR_1g023050 | 49.718 | 177 | 74 | 4 | 1 | 177 | 265 | 426 | 7.17e-51 | 172 |
| MS.gene050135.t1 | MTR_3g112300 | 50.282 | 177 | 73 | 4 | 1 | 177 | 254 | 415 | 5.66e-50 | 168 |
| MS.gene050135.t1 | MTR_8g098815 | 52.874 | 174 | 69 | 5 | 1 | 170 | 268 | 432 | 9.14e-50 | 169 |
| MS.gene050135.t1 | MTR_3g112300 | 50.282 | 177 | 73 | 4 | 1 | 177 | 254 | 415 | 1.65e-49 | 168 |
| MS.gene050135.t1 | MTR_4g051532 | 49.457 | 184 | 75 | 5 | 1 | 179 | 304 | 474 | 7.70e-48 | 165 |
| MS.gene050135.t1 | MTR_3g112290 | 47.644 | 191 | 67 | 7 | 1 | 177 | 247 | 418 | 1.30e-47 | 160 |
| MS.gene050135.t1 | MTR_3g112300 | 46.104 | 154 | 68 | 4 | 1 | 154 | 254 | 392 | 2.20e-35 | 127 |
| MS.gene050135.t1 | MTR_1g016490 | 34.857 | 175 | 98 | 4 | 1 | 174 | 332 | 491 | 9.40e-29 | 111 |
| MS.gene050135.t1 | MTR_3g112300 | 43.077 | 130 | 60 | 3 | 1 | 130 | 254 | 369 | 6.42e-26 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050135.t1 | AT5G02030 | 53.968 | 189 | 66 | 5 | 1 | 178 | 241 | 419 | 1.14e-58 | 192 |
| MS.gene050135.t1 | AT2G27990 | 58.101 | 179 | 59 | 5 | 1 | 179 | 334 | 496 | 8.76e-57 | 187 |
| MS.gene050135.t1 | AT4G34610 | 52.459 | 183 | 65 | 5 | 1 | 177 | 218 | 384 | 1.15e-56 | 186 |
| MS.gene050135.t1 | AT4G34610 | 52.459 | 183 | 65 | 5 | 1 | 177 | 218 | 384 | 1.15e-56 | 186 |
| MS.gene050135.t1 | AT4G34610 | 52.459 | 183 | 65 | 5 | 1 | 177 | 218 | 384 | 1.15e-56 | 186 |
| MS.gene050135.t1 | AT4G34610 | 52.459 | 183 | 65 | 5 | 1 | 177 | 218 | 384 | 1.15e-56 | 186 |
| MS.gene050135.t1 | AT2G35940 | 53.216 | 171 | 71 | 4 | 1 | 168 | 282 | 446 | 5.29e-55 | 184 |
| MS.gene050135.t1 | AT2G35940 | 53.216 | 171 | 71 | 4 | 1 | 168 | 282 | 446 | 5.29e-55 | 184 |
| MS.gene050135.t1 | AT2G35940 | 53.216 | 171 | 71 | 4 | 1 | 168 | 282 | 446 | 5.29e-55 | 184 |
| MS.gene050135.t1 | AT2G16400 | 50.273 | 183 | 73 | 6 | 1 | 177 | 185 | 355 | 2.72e-53 | 176 |
| MS.gene050135.t1 | AT2G23760 | 51.381 | 181 | 72 | 4 | 1 | 174 | 320 | 491 | 8.57e-53 | 177 |
| MS.gene050135.t1 | AT2G23760 | 51.381 | 181 | 72 | 4 | 1 | 174 | 320 | 491 | 8.57e-53 | 177 |
| MS.gene050135.t1 | AT2G23760 | 51.381 | 181 | 72 | 4 | 1 | 174 | 320 | 491 | 8.57e-53 | 177 |
| MS.gene050135.t1 | AT4G36870 | 51.381 | 181 | 72 | 5 | 1 | 174 | 394 | 565 | 1.18e-51 | 176 |
| MS.gene050135.t1 | AT4G36870 | 51.381 | 181 | 72 | 5 | 1 | 174 | 394 | 565 | 1.18e-51 | 176 |
| MS.gene050135.t1 | AT1G19700 | 47.802 | 182 | 81 | 4 | 1 | 177 | 249 | 421 | 2.22e-51 | 172 |
| MS.gene050135.t1 | AT1G19700 | 47.802 | 182 | 81 | 4 | 1 | 177 | 249 | 421 | 2.22e-51 | 172 |
| MS.gene050135.t1 | AT1G19700 | 47.802 | 182 | 81 | 4 | 1 | 177 | 249 | 421 | 2.22e-51 | 172 |
| MS.gene050135.t1 | AT1G19700 | 47.802 | 182 | 81 | 4 | 1 | 177 | 249 | 421 | 2.22e-51 | 172 |
| MS.gene050135.t1 | AT1G19700 | 47.802 | 182 | 81 | 4 | 1 | 177 | 249 | 421 | 2.22e-51 | 172 |
| MS.gene050135.t1 | AT1G75410 | 48.603 | 179 | 81 | 4 | 1 | 177 | 247 | 416 | 2.30e-50 | 169 |
| MS.gene050135.t1 | AT1G75410 | 48.603 | 179 | 81 | 4 | 1 | 177 | 247 | 416 | 2.30e-50 | 169 |
| MS.gene050135.t1 | AT2G27220 | 46.703 | 182 | 63 | 5 | 1 | 177 | 146 | 298 | 3.62e-48 | 162 |
| MS.gene050135.t1 | AT2G27220 | 46.703 | 182 | 63 | 5 | 1 | 177 | 146 | 298 | 3.62e-48 | 162 |
| MS.gene050135.t1 | AT2G27220 | 46.703 | 182 | 63 | 5 | 1 | 177 | 164 | 316 | 6.06e-48 | 162 |
| MS.gene050135.t1 | AT1G75430 | 45.198 | 177 | 88 | 4 | 1 | 174 | 99 | 269 | 1.69e-46 | 154 |
| MS.gene050135.t1 | AT2G23760 | 40.773 | 233 | 70 | 5 | 1 | 174 | 320 | 543 | 8.57e-46 | 159 |
| MS.gene050135.t1 | AT5G41410 | 45.699 | 186 | 85 | 5 | 1 | 179 | 287 | 463 | 9.93e-46 | 158 |
| MS.gene050135.t1 | AT4G36870 | 47.531 | 162 | 69 | 5 | 1 | 155 | 394 | 546 | 7.19e-38 | 136 |
| MS.gene050135.t1 | AT4G36870 | 46.875 | 160 | 69 | 5 | 1 | 153 | 394 | 544 | 1.26e-36 | 133 |
| MS.gene050135.t1 | AT1G75410 | 45.513 | 156 | 74 | 4 | 1 | 154 | 247 | 393 | 3.35e-36 | 130 |
| MS.gene050135.t1 | AT4G32980 | 62.319 | 69 | 25 | 1 | 106 | 174 | 372 | 439 | 1.33e-28 | 110 |
| MS.gene050135.t1 | AT4G32980 | 62.319 | 69 | 25 | 1 | 106 | 174 | 372 | 439 | 1.33e-28 | 110 |
| MS.gene050135.t1 | AT2G27990 | 48.462 | 130 | 52 | 4 | 1 | 130 | 334 | 448 | 4.71e-26 | 103 |
| MS.gene050135.t1 | AT1G75430 | 38.346 | 133 | 74 | 3 | 1 | 130 | 99 | 226 | 2.39e-22 | 91.3 |
Find 32 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTTCAGGTAACCCTCTC+TGG | 0.199963 | 4.3:+42914749 | None:intergenic |
| AGAATTGCCACTGATCTTTC+AGG | 0.234528 | 4.3:+42914736 | None:intergenic |
| CCACCATTTGCATTTGTTGA+TGG | 0.290812 | 4.3:+42915093 | None:intergenic |
| AACCTCAACAACAGCATGTT+TGG | 0.326715 | 4.3:-42914777 | MS.gene050135:CDS |
| ATAAATAATAGGTATCAAAT+TGG | 0.363771 | 4.3:-42913215 | MS.gene050135:intron |
| AGCTACACCATACATTTCAT+TGG | 0.390026 | 4.3:-42915036 | MS.gene050135:CDS |
| AGCTTACAAAAGAACAAATC+TGG | 0.394523 | 4.3:-42914829 | MS.gene050135:CDS |
| TAAACGCTCGAGTCCGTGTA+TGG | 0.405578 | 4.3:-42913188 | MS.gene050135:CDS |
| CAGTGGCAATTCTTAAAGCT+TGG | 0.440006 | 4.3:-42914726 | MS.gene050135:CDS |
| CACATGTTAGCTACTCAAAC+AGG | 0.444126 | 4.3:-42913905 | MS.gene050135:CDS |
| TCATCATTTGAGTCAGTAGC+TGG | 0.449229 | 4.3:-42915068 | MS.gene050135:CDS |
| CAAAAGAACAAATCTGGAGC+TGG | 0.451287 | 4.3:-42914823 | MS.gene050135:CDS |
| TCTTTCAGGTAACCCTCTCT+GGG | 0.462284 | 4.3:+42914750 | None:intergenic |
| CTCCAAACATGCTGTTGTTG+AGG | 0.475472 | 4.3:+42914775 | None:intergenic |
| CAACCATTGGTTTCCATACA+CGG | 0.478260 | 4.3:+42913175 | None:intergenic |
| ATGTGTATTTCTTCAACCAT+TGG | 0.483354 | 4.3:+42913162 | None:intergenic |
| ATACACATGCTTGAATCAAA+AGG | 0.494309 | 4.3:-42913147 | None:intergenic |
| ATGTGTTTATCAGTGTCTGT+AGG | 0.521595 | 4.3:+42913923 | None:intergenic |
| ATACCATCAACAAATGCAAA+TGG | 0.525199 | 4.3:-42915096 | MS.gene050135:CDS |
| TGTGTTTATCAGTGTCTGTA+GGG | 0.537038 | 4.3:+42913924 | None:intergenic |
| CTCAACAACAGCATGTTTGG+AGG | 0.557669 | 4.3:-42914774 | MS.gene050135:CDS |
| AAAAGAACAAATCTGGAGCT+GGG | 0.563662 | 4.3:-42914822 | MS.gene050135:CDS |
| TTTAGAGCCAATGAAATGTA+TGG | 0.569263 | 4.3:+42915029 | None:intergenic |
| ATAATAATATGACAAGGCTA+AGG | 0.584622 | 4.3:-42914870 | MS.gene050135:CDS |
| ATGTTTGGAGGCCCCAGAGA+GGG | 0.586157 | 4.3:-42914762 | MS.gene050135:CDS |
| TTGATATATAGGTTACAAGA+AGG | 0.611148 | 4.3:-42915127 | None:intergenic |
| AGTCCGTGTATGGAAACCAA+TGG | 0.633260 | 4.3:-42913178 | MS.gene050135:CDS |
| AACAGGTCTATCAAGAAACC+AGG | 0.637050 | 4.3:-42913888 | MS.gene050135:intron |
| CCATCAACAAATGCAAATGG+TGG | 0.649972 | 4.3:-42915093 | MS.gene050135:CDS |
| AGGGTTACCTGAAAGATCAG+TGG | 0.678566 | 4.3:-42914743 | MS.gene050135:CDS |
| CATGTTTGGAGGCCCCAGAG+AGG | 0.701806 | 4.3:-42914763 | MS.gene050135:CDS |
| CTTTCAGGTAACCCTCTCTG+GGG | 0.726576 | 4.3:+42914751 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAATAATAATATGACA+AGG | - | chr4.3:42913388-42913407 | MS.gene050135:intron | 10.0% |
| !! | TTAAATTATATAAGTATGTA+CGG | - | chr4.3:42913620-42913639 | MS.gene050135:intron | 10.0% |
| !!! | TAAAAAAATTTGTAATTTGT+AGG | + | chr4.3:42913871-42913890 | None:intergenic | 10.0% |
| !!! | TGTTTTATGAATATAATAAA+AGG | - | chr4.3:42914271-42914290 | MS.gene050135:intron | 10.0% |
| !! | AAATTGTAGAAATTATTGTA+AGG | - | chr4.3:42913909-42913928 | MS.gene050135:CDS | 15.0% |
| !! | ATAAATAATAGGTATCAAAT+TGG | - | chr4.3:42915049-42915068 | MS.gene050135:CDS | 15.0% |
| !! | TGTAATAACTGATAAATAAT+AGG | - | chr4.3:42915038-42915057 | MS.gene050135:CDS | 15.0% |
| !!! | AACATAAGATATATTGTTTT+AGG | + | chr4.3:42914255-42914274 | None:intergenic | 15.0% |
| !!! | AATTATTGATTTGAAAATCA+AGG | + | chr4.3:42914485-42914504 | None:intergenic | 15.0% |
| !!! | ACCAAAAAACATTTTTAAAT+GGG | + | chr4.3:42913711-42913730 | None:intergenic | 15.0% |
| !!! | ACTTTGTTTTTTTGAAAATA+TGG | + | chr4.3:42913681-42913700 | None:intergenic | 15.0% |
| !!! | ATTTCAATGCATAATTTTTT+AGG | + | chr4.3:42914229-42914248 | None:intergenic | 15.0% |
| !!! | TTCTGACTTTTTTTAAAATA+GGG | - | chr4.3:42913754-42913773 | MS.gene050135:intron | 15.0% |
| !!! | TTTCAATGCATAATTTTTTA+GGG | + | chr4.3:42914228-42914247 | None:intergenic | 15.0% |
| !!! | TTTTATATTATTTCTCTTGA+TGG | - | chr4.3:42914418-42914437 | MS.gene050135:intron | 15.0% |
| !! | CAATAAAAACAAAGTAGTTA+CGG | + | chr4.3:42914661-42914680 | None:intergenic | 20.0% |
| !!! | AACAACGAGTTAATTTTATA+AGG | - | chr4.3:42913938-42913957 | MS.gene050135:intron | 20.0% |
| !!! | ATTTTCTGCAATTTGAATTA+TGG | - | chr4.3:42914738-42914757 | MS.gene050135:CDS | 20.0% |
| !!! | CCAAAAAACATTTTTAAATG+GGG | + | chr4.3:42913710-42913729 | None:intergenic | 20.0% |
| !!! | CTTCTGACTTTTTTTAAAAT+AGG | - | chr4.3:42913753-42913772 | MS.gene050135:intron | 20.0% |
| !!! | GACCAAAAAACATTTTTAAA+TGG | + | chr4.3:42913712-42913731 | None:intergenic | 20.0% |
| !!! | TAATACTTTTTCATACAACA+TGG | + | chr4.3:42914162-42914181 | None:intergenic | 20.0% |
| !!! | TCTGACTTTTTTTAAAATAG+GGG | - | chr4.3:42913755-42913774 | MS.gene050135:intron | 20.0% |
| !!! | TGTATGAAAAAGTATTATGA+AGG | - | chr4.3:42914165-42914184 | MS.gene050135:intron | 20.0% |
| ! | AAACTTACATGTCAAGTATT+AGG | - | chr4.3:42913309-42913328 | MS.gene050135:intron | 25.0% |
| ! | AACATGGTTAAAATGGTATT+AGG | + | chr4.3:42914146-42914165 | None:intergenic | 25.0% |
| ! | AATGAAAACCAAAACAATCA+AGG | + | chr4.3:42914580-42914599 | None:intergenic | 25.0% |
| ! | ACATGGTTAAAATGGTATTA+GGG | + | chr4.3:42914145-42914164 | None:intergenic | 25.0% |
| ! | ATAATAATATGACAAGGCTA+AGG | - | chr4.3:42913394-42913413 | MS.gene050135:intron | 25.0% |
| ! | ATGCAAGATTTATTTCACTT+GGG | + | chr4.3:42913990-42914009 | None:intergenic | 25.0% |
| ! | CAATTTACAAAACTACATGT+AGG | + | chr4.3:42913895-42913914 | None:intergenic | 25.0% |
| ! | GTAAAAATTCACATACAAGT+CGG | + | chr4.3:42915005-42915024 | None:intergenic | 25.0% |
| ! | TCTTCAAAAACATTCTTAGA+AGG | + | chr4.3:42914940-42914959 | None:intergenic | 25.0% |
| ! | TTCATACAACATGGTTAAAA+TGG | + | chr4.3:42914153-42914172 | None:intergenic | 25.0% |
| !! | AAATTTATTACTGCTACTTG+TGG | + | chr4.3:42913361-42913380 | None:intergenic | 25.0% |
| !! | ATGTACGGATTAAATATGTT+TGG | - | chr4.3:42913635-42913654 | MS.gene050135:intron | 25.0% |
| !! | ATTTGAAAACTTCGAAGTTT+TGG | + | chr4.3:42914546-42914565 | None:intergenic | 25.0% |
| !! | TAATTGTTCCTTGATTGTTT+TGG | - | chr4.3:42914569-42914588 | MS.gene050135:intron | 25.0% |
| !! | TTTGAAAACTTCGAAGTTTT+GGG | + | chr4.3:42914545-42914564 | None:intergenic | 25.0% |
| !!! | AATGCATAATTTTTTAGGGT+GGG | + | chr4.3:42914224-42914243 | None:intergenic | 25.0% |
| !!! | CCCCATTTAAAAATGTTTTT+TGG | - | chr4.3:42913707-42913726 | MS.gene050135:intron | 25.0% |
| !!! | TATTATGTGTCATTTTGTTG+AGG | - | chr4.3:42914963-42914982 | MS.gene050135:CDS | 25.0% |
| AGCTTACAAAAGAACAAATC+TGG | - | chr4.3:42913435-42913454 | MS.gene050135:intron | 30.0% | |
| ATACACATGCTTGAATCAAA+AGG | - | chr4.3:42915117-42915136 | MS.gene050135:CDS | 30.0% | |
| ATACCATCAACAAATGCAAA+TGG | - | chr4.3:42913168-42913187 | MS.gene050135:CDS | 30.0% | |
| ATGTGTATTTCTTCAACCAT+TGG | + | chr4.3:42915105-42915124 | None:intergenic | 30.0% | |
| CAAAAACATTCTTAGAAGGA+GGG | + | chr4.3:42914936-42914955 | None:intergenic | 30.0% | |
| GAAGAAAAAAAGTGAAGTTG+AGG | + | chr4.3:42913734-42913753 | None:intergenic | 30.0% | |
| GATGCAAGATTTATTTCACT+TGG | + | chr4.3:42913991-42914010 | None:intergenic | 30.0% | |
| TCAAAAACATTCTTAGAAGG+AGG | + | chr4.3:42914937-42914956 | None:intergenic | 30.0% | |
| TCAATAATTGCACTCTTGAA+TGG | - | chr4.3:42914496-42914515 | MS.gene050135:intron | 30.0% | |
| TTCTATTTGACATACACTCT+TGG | - | chr4.3:42914444-42914463 | MS.gene050135:intron | 30.0% | |
| ! | TGATCTGTGATAGCATTTTA+AGG | + | chr4.3:42913285-42913304 | None:intergenic | 30.0% |
| ! | TGCTGTTCAATTTCATTTTC+AGG | - | chr4.3:42914315-42914334 | MS.gene050135:intron | 30.0% |
| ! | TTTAGAGCCAATGAAATGTA+TGG | + | chr4.3:42913238-42913257 | None:intergenic | 30.0% |
| !!! | ATGCATAATTTTTTAGGGTG+GGG | + | chr4.3:42914223-42914242 | None:intergenic | 30.0% |
| !!! | CAATGCATAATTTTTTAGGG+TGG | + | chr4.3:42914225-42914244 | None:intergenic | 30.0% |
| AAATGTGAGTCATCATCTGA+TGG | + | chr4.3:42914796-42914815 | None:intergenic | 35.0% | |
| ACCATCAAATCAAGATCAGA+CGG | + | chr4.3:42914861-42914880 | None:intergenic | 35.0% | |
| AGAGTGACAGAGAAAACATA+CGG | + | chr4.3:42913584-42913603 | None:intergenic | 35.0% | |
| AGCTACACCATACATTTCAT+TGG | - | chr4.3:42913228-42913247 | MS.gene050135:intron | 35.0% | |
| AGTAAAAAAACACTTGCGCA+CGG | - | chr4.3:42914084-42914103 | MS.gene050135:intron | 35.0% | |
| ATAGTAGTCTAGCTGCAAAA+TGG | + | chr4.3:42914720-42914739 | None:intergenic | 35.0% | |
| ATGTGTTTATCAGTGTCTGT+AGG | + | chr4.3:42914344-42914363 | None:intergenic | 35.0% | |
| ATTTGACATACACTCTTGGA+TGG | - | chr4.3:42914448-42914467 | MS.gene050135:intron | 35.0% | |
| CACATTGCAGTTATGCAATT+TGG | + | chr4.3:42914884-42914903 | None:intergenic | 35.0% | |
| TACATGTCAAGTATTAGGAG+AGG | - | chr4.3:42913314-42913333 | MS.gene050135:intron | 35.0% | |
| TCACTTGGGCATTATAGAAT+TGG | + | chr4.3:42913976-42913995 | None:intergenic | 35.0% | |
| TGTGTTTATCAGTGTCTGTA+GGG | + | chr4.3:42914343-42914362 | None:intergenic | 35.0% | |
| ! | AAAAGAACAAATCTGGAGCT+GGG | - | chr4.3:42913442-42913461 | MS.gene050135:intron | 35.0% |
| !!! | TGCATAATTTTTTAGGGTGG+GGG | + | chr4.3:42914222-42914241 | None:intergenic | 35.0% |
| AACAGGTCTATCAAGAAACC+AGG | - | chr4.3:42914376-42914395 | MS.gene050135:intron | 40.0% | |
| AACCTCAACAACAGCATGTT+TGG | - | chr4.3:42913487-42913506 | MS.gene050135:intron | 40.0% | |
| AGAATTGCCACTGATCTTTC+AGG | + | chr4.3:42913531-42913550 | None:intergenic | 40.0% | |
| CACATGTTAGCTACTCAAAC+AGG | - | chr4.3:42914359-42914378 | MS.gene050135:intron | 40.0% | |
| CAGTGGCAATTCTTAAAGCT+TGG | - | chr4.3:42913538-42913557 | MS.gene050135:intron | 40.0% | |
| CCATATTGCTTAGCTGCAAA+TGG | + | chr4.3:42914768-42914787 | None:intergenic | 40.0% | |
| CCATCAACAAATGCAAATGG+TGG | - | chr4.3:42913171-42913190 | MS.gene050135:CDS | 40.0% | |
| CCATTTGCAGCTAAGCAATA+TGG | - | chr4.3:42914765-42914784 | MS.gene050135:CDS | 40.0% | |
| TCATCATTTGAGTCAGTAGC+TGG | - | chr4.3:42913196-42913215 | MS.gene050135:CDS | 40.0% | |
| ! | CAAAAGAACAAATCTGGAGC+TGG | - | chr4.3:42913441-42913460 | MS.gene050135:intron | 40.0% |
| ! | CCACCATTTGCATTTGTTGA+TGG | + | chr4.3:42913174-42913193 | None:intergenic | 40.0% |
| ! | TCCGTCTGATCTTGATTTGA+TGG | - | chr4.3:42914857-42914876 | MS.gene050135:CDS | 40.0% |
| ! | TTACTGCTACTTGTGGTTGT+TGG | + | chr4.3:42913354-42913373 | None:intergenic | 40.0% |
| !! | CAACCATTGGTTTCCATACA+CGG | + | chr4.3:42915092-42915111 | None:intergenic | 40.0% |
| !!! | TTTTTTAGGGTGGGGGAAAT+TGG | + | chr4.3:42914215-42914234 | None:intergenic | 40.0% |
| AGGGTTACCTGAAAGATCAG+TGG | - | chr4.3:42913521-42913540 | MS.gene050135:intron | 45.0% | |
| AGGTCTATCAAGAAACCAGG+TGG | - | chr4.3:42914379-42914398 | MS.gene050135:intron | 45.0% | |
| AGTCCGTGTATGGAAACCAA+TGG | - | chr4.3:42915086-42915105 | MS.gene050135:CDS | 45.0% | |
| CTCAACAACAGCATGTTTGG+AGG | - | chr4.3:42913490-42913509 | MS.gene050135:intron | 45.0% | |
| CTCCAAACATGCTGTTGTTG+AGG | + | chr4.3:42913492-42913511 | None:intergenic | 45.0% | |
| GGGATAAAGATCACTTGCAG+CGG | + | chr4.3:42914916-42914935 | None:intergenic | 45.0% | |
| GGTCTATCAAGAAACCAGGT+GGG | - | chr4.3:42914380-42914399 | MS.gene050135:intron | 45.0% | |
| GTCTATCAAGAAACCAGGTG+GGG | - | chr4.3:42914381-42914400 | MS.gene050135:intron | 45.0% | |
| GTGAGTCATCATCTGATGGA+CGG | + | chr4.3:42914792-42914811 | None:intergenic | 45.0% | |
| TCTATCAAGAAACCAGGTGG+GGG | - | chr4.3:42914382-42914401 | MS.gene050135:intron | 45.0% | |
| ! | ATCTTTCAGGTAACCCTCTC+TGG | + | chr4.3:42913518-42913537 | None:intergenic | 45.0% |
| ! | TCTTTCAGGTAACCCTCTCT+GGG | + | chr4.3:42913517-42913536 | None:intergenic | 45.0% |
| AAAGATCACTTGCAGCGGCA+AGG | + | chr4.3:42914911-42914930 | None:intergenic | 50.0% | |
| GGGGGAAATTGGTCAGTAGT+AGG | + | chr4.3:42914204-42914223 | None:intergenic | 50.0% | |
| TAAACGCTCGAGTCCGTGTA+TGG | - | chr4.3:42915076-42915095 | MS.gene050135:CDS | 50.0% | |
| ! | CTTTCAGGTAACCCTCTCTG+GGG | + | chr4.3:42913516-42913535 | None:intergenic | 50.0% |
| ATGTTTGGAGGCCCCAGAGA+GGG | - | chr4.3:42913502-42913521 | MS.gene050135:intron | 55.0% | |
| TGAGTAAGTAGACCCCCACC+TGG | + | chr4.3:42914397-42914416 | None:intergenic | 55.0% | |
| CATGTTTGGAGGCCCCAGAG+AGG | - | chr4.3:42913501-42913520 | MS.gene050135:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 42913148 | 42915138 | 42913148 | ID=MS.gene050135 |
| chr4.3 | mRNA | 42913148 | 42915138 | 42913148 | ID=MS.gene050135.t1;Parent=MS.gene050135 |
| chr4.3 | exon | 42914963 | 42915138 | 42914963 | ID=MS.gene050135.t1.exon1;Parent=MS.gene050135.t1 |
| chr4.3 | CDS | 42914963 | 42915138 | 42914963 | ID=cds.MS.gene050135.t1;Parent=MS.gene050135.t1 |
| chr4.3 | exon | 42914700 | 42914921 | 42914700 | ID=MS.gene050135.t1.exon2;Parent=MS.gene050135.t1 |
| chr4.3 | CDS | 42914700 | 42914921 | 42914700 | ID=cds.MS.gene050135.t1;Parent=MS.gene050135.t1 |
| chr4.3 | exon | 42913889 | 42913949 | 42913889 | ID=MS.gene050135.t1.exon3;Parent=MS.gene050135.t1 |
| chr4.3 | CDS | 42913889 | 42913949 | 42913889 | ID=cds.MS.gene050135.t1;Parent=MS.gene050135.t1 |
| chr4.3 | exon | 42913148 | 42913226 | 42913148 | ID=MS.gene050135.t1.exon4;Parent=MS.gene050135.t1 |
| chr4.3 | CDS | 42913148 | 42913226 | 42913148 | ID=cds.MS.gene050135.t1;Parent=MS.gene050135.t1 |
| Gene Sequence |
| Protein sequence |
