Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050190.t1 | XP_013448425.1 | 95.8 | 265 | 11 | 0 | 1 | 265 | 1 | 265 | 3.00E-141 | 511.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050190.t1 | A0A072TYF2 | 95.8 | 265 | 11 | 0 | 1 | 265 | 1 | 265 | 2.2e-141 | 511.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050190 | MS.gene56725 | 0.805155 | 1.53E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050190.t1 | MTR_7g050425 | 95.849 | 265 | 11 | 0 | 1 | 265 | 1 | 265 | 0.0 | 531 |
| MS.gene050190.t1 | MTR_0900s0010 | 62.172 | 267 | 99 | 1 | 1 | 265 | 1 | 267 | 1.30e-124 | 356 |
| MS.gene050190.t1 | MTR_0901s0010 | 62.172 | 267 | 99 | 1 | 1 | 265 | 1 | 267 | 1.30e-124 | 356 |
| MS.gene050190.t1 | MTR_8g006290 | 62.891 | 256 | 95 | 0 | 7 | 262 | 15 | 270 | 8.25e-122 | 348 |
| MS.gene050190.t1 | MTR_5g021570 | 41.667 | 132 | 65 | 4 | 115 | 240 | 137 | 262 | 2.96e-15 | 75.1 |
| MS.gene050190.t1 | MTR_5g097770 | 65.517 | 58 | 20 | 0 | 115 | 172 | 146 | 203 | 3.33e-15 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050190.t1 | AT3G60450 | 57.895 | 247 | 103 | 1 | 17 | 262 | 12 | 258 | 1.71e-106 | 310 |
| MS.gene050190.t1 | AT3G60450 | 57.895 | 247 | 103 | 1 | 17 | 262 | 44 | 290 | 2.23e-106 | 310 |
| MS.gene050190.t1 | AT3G60440 | 53.668 | 259 | 118 | 2 | 7 | 264 | 25 | 282 | 1.10e-97 | 288 |
| MS.gene050190.t1 | AT3G60415 | 54.321 | 243 | 107 | 2 | 17 | 258 | 11 | 250 | 6.02e-90 | 268 |
| MS.gene050190.t1 | AT3G60420 | 50.407 | 246 | 111 | 3 | 17 | 262 | 33 | 267 | 4.51e-87 | 260 |
| MS.gene050190.t1 | AT3G60440 | 56.398 | 211 | 91 | 1 | 7 | 216 | 25 | 235 | 1.07e-82 | 248 |
Find 71 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGATATTCTGGTACATAAT+TGG | 0.172656 | 7.1:-53800063 | None:intergenic |
| GAAAGAGATCACTCCCTTAT+TGG | 0.240145 | 7.1:+53801742 | MS.gene050190:CDS |
| CATTAAAATTTCCACCAATA+AGG | 0.241584 | 7.1:-53801756 | None:intergenic |
| AAACTCAAATTTCCATCTTT+AGG | 0.246362 | 7.1:-53800658 | None:intergenic |
| TTTAAGAGAAAACCAAAGTT+TGG | 0.283514 | 7.1:+53800029 | MS.gene050190:CDS |
| CATCCACGGCCGCACGGCCC+TGG | 0.290760 | 7.1:+53800133 | MS.gene050190:CDS |
| TTGCAGGTCTCTCTTGAGTA+TGG | 0.302762 | 7.1:+53800589 | MS.gene050190:intron |
| TCACCCCACTTTGACCACTA+TGG | 0.323275 | 7.1:-53801786 | None:intergenic |
| ATTAAAATTTCCACCAATAA+GGG | 0.328983 | 7.1:-53801755 | None:intergenic |
| GAGTGATCTCTTTCGAAAAT+AGG | 0.329886 | 7.1:-53801733 | None:intergenic |
| GCCTCATCACGATGATATTC+TGG | 0.342891 | 7.1:-53800074 | None:intergenic |
| TCGATAACTTTGTACCTTCA+TGG | 0.346978 | 7.1:+53800109 | MS.gene050190:CDS |
| CTTGCAGCCATGCTCCCAGC+TGG | 0.355160 | 7.1:+53800694 | MS.gene050190:CDS |
| GTCTGGATGCAGCGAAGAAA+TGG | 0.367364 | 7.1:-53800255 | None:intergenic |
| ATCCCAGGGCCGTGCGGCCG+TGG | 0.377878 | 7.1:-53800136 | None:intergenic |
| GGATCCTCCGTTGACCCAAC+CGG | 0.382542 | 7.1:+53800155 | MS.gene050190:CDS |
| TGCTCGAACCTGGCCCGGTT+GGG | 0.386842 | 7.1:-53800169 | None:intergenic |
| TTGGGTCAACGGAGGATCCC+AGG | 0.424573 | 7.1:-53800151 | None:intergenic |
| TCCGTTGACCCAACCGGGCC+AGG | 0.426856 | 7.1:+53800161 | MS.gene050190:CDS |
| AGTGGATAATAATGTAGAAA+TGG | 0.427459 | 7.1:+53800720 | MS.gene050190:CDS |
| TGATATTCTGGTACATAATT+GGG | 0.430694 | 7.1:-53800062 | None:intergenic |
| ATGCTCGAACCTGGCCCGGT+TGG | 0.432526 | 7.1:-53800170 | None:intergenic |
| ATCCACGGCCGCACGGCCCT+GGG | 0.433879 | 7.1:+53800134 | MS.gene050190:CDS |
| CTCAATGTTGCTCCTAAAGA+TGG | 0.435432 | 7.1:+53800646 | MS.gene050190:CDS |
| CACTGTCCCAGCTGGGAGCA+TGG | 0.456047 | 7.1:-53800701 | None:intergenic |
| TAACGAGTTCGGCAGCAGTC+TGG | 0.456635 | 7.1:-53800272 | None:intergenic |
| TCTGGATGCAGCGAAGAAAT+GGG | 0.458733 | 7.1:-53800254 | None:intergenic |
| ACCTGGCCCGGTTGGGTCAA+CGG | 0.459559 | 7.1:-53800162 | None:intergenic |
| ATAAACCTCAGCTGCCTAAG+TGG | 0.461929 | 7.1:+53800837 | MS.gene050190:intron |
| GAAGCTTTATGAGGAAATAT+AGG | 0.462527 | 7.1:-53801809 | None:intergenic |
| ACTTTCACGAACATCGTTAA+CGG | 0.469452 | 7.1:-53800307 | None:intergenic |
| GAGACAATGAGTCGATGTAT+TGG | 0.471947 | 7.1:-53800231 | None:intergenic |
| CAGGTTCGAGCATTTCAGAT+AGG | 0.476524 | 7.1:+53800180 | MS.gene050190:CDS |
| CGATAACTTTGTACCTTCAT+GGG | 0.482954 | 7.1:+53800110 | MS.gene050190:CDS |
| CATTGATCCTTCAAAAGTAA+AGG | 0.483146 | 7.1:+53800350 | MS.gene050190:CDS |
| TATCACTCAGAAGCTTTATG+AGG | 0.483225 | 7.1:-53801818 | None:intergenic |
| TGAAATGCTCGAACCTGGCC+CGG | 0.488944 | 7.1:-53800174 | None:intergenic |
| TTATTATCCACTGTCCCAGC+TGG | 0.491510 | 7.1:-53800709 | None:intergenic |
| TTTAATGTATTAACCCATAG+TGG | 0.491665 | 7.1:+53801772 | MS.gene050190:CDS |
| AGAGAGAGCAATAACGAGTT+CGG | 0.495160 | 7.1:-53800283 | None:intergenic |
| CTATCTGAAATGCTCGAACC+TGG | 0.495767 | 7.1:-53800179 | None:intergenic |
| AGGTTCGAGCATTTCAGATA+GGG | 0.503714 | 7.1:+53800181 | MS.gene050190:CDS |
| CACCCCACTTTGACCACTAT+GGG | 0.504723 | 7.1:-53801785 | None:intergenic |
| TGTAGAAATGGTATATAAAG+AGG | 0.514312 | 7.1:+53800732 | MS.gene050190:CDS |
| AAAACTGATTCTTCCCACTT+AGG | 0.516560 | 7.1:-53800851 | None:intergenic |
| TCTGGTACATAATTGGGTGT+TGG | 0.519486 | 7.1:-53800056 | None:intergenic |
| TTGCAGCCATGCTCCCAGCT+GGG | 0.519729 | 7.1:+53800695 | MS.gene050190:CDS |
| TTGGAAGACCAAGACTTTGT+CGG | 0.523057 | 7.1:-53800212 | None:intergenic |
| CAAAGTATCCGACAAAGTCT+TGG | 0.530959 | 7.1:+53800204 | MS.gene050190:CDS |
| CAGTAGGATATTTATCTGCA+AGG | 0.533834 | 7.1:-53800910 | None:intergenic |
| AGAGATCACTCCCTTATTGG+TGG | 0.537631 | 7.1:+53801745 | MS.gene050190:CDS |
| GATCCTCCGTTGACCCAACC+GGG | 0.543902 | 7.1:+53800156 | MS.gene050190:CDS |
| TGGGTCAACGGAGGATCCCA+GGG | 0.548469 | 7.1:-53800150 | None:intergenic |
| TGTACCTTCATGGGCATCCA+CGG | 0.560934 | 7.1:+53800119 | MS.gene050190:CDS |
| CATGCTCCCAGCTGGGACAG+TGG | 0.585065 | 7.1:+53800702 | MS.gene050190:CDS |
| ACAAACAACAAGTTCTCAGT+AGG | 0.589570 | 7.1:-53800926 | None:intergenic |
| CATGGGCATCCACGGCCGCA+CGG | 0.596436 | 7.1:+53800127 | MS.gene050190:CDS |
| GCGGCCGTGGATGCCCATGA+AGG | 0.599684 | 7.1:-53800123 | None:intergenic |
| AACTTGTTGTTTGTTACACA+TGG | 0.599756 | 7.1:+53800935 | MS.gene050190:CDS |
| TTCAGGTGAAGGAATTGAAG+TGG | 0.599842 | 7.1:+53801639 | MS.gene050190:intron |
| GTAGATAAAGTGCAATATTG+TGG | 0.601012 | 7.1:+53801691 | MS.gene050190:CDS |
| AATATCATCGTGATGAGGCA+TGG | 0.603598 | 7.1:+53800078 | MS.gene050190:CDS |
| TAAACCTCAGCTGCCTAAGT+GGG | 0.604060 | 7.1:+53800838 | MS.gene050190:intron |
| TATTATCCACTGTCCCAGCT+GGG | 0.605897 | 7.1:-53800708 | None:intergenic |
| TAACCCATAGTGGTCAAAGT+GGG | 0.628197 | 7.1:+53801782 | MS.gene050190:CDS |
| CGGAGGATCCCAGGGCCGTG+CGG | 0.639532 | 7.1:-53800142 | None:intergenic |
| CTGGATGCAGCGAAGAAATG+GGG | 0.650620 | 7.1:-53800253 | None:intergenic |
| AACCCATAGTGGTCAAAGTG+GGG | 0.664901 | 7.1:+53801783 | MS.gene050190:CDS |
| ACCAGAATATCATCGTGATG+AGG | 0.672322 | 7.1:+53800073 | MS.gene050190:CDS |
| TTAACCCATAGTGGTCAAAG+TGG | 0.687457 | 7.1:+53801781 | MS.gene050190:CDS |
| TGGCCCGGTTGGGTCAACGG+AGG | 0.694421 | 7.1:-53800159 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAACTAACTAATTATGA+TGG | - | chr7.1:53800776-53800795 | None:intergenic | 15.0% |
| !!! | AAAATTAAAGCCATTTTTTT+TGG | + | chr7.1:53800432-53800451 | MS.gene050190:intron | 15.0% |
| !!! | AAATTAAAGCCATTTTTTTT+GGG | + | chr7.1:53800433-53800452 | MS.gene050190:intron | 15.0% |
| !!! | AATGTTATTTGTTAAATGAA+TGG | + | chr7.1:53801526-53801545 | MS.gene050190:intron | 15.0% |
| !!! | ATGAATTGATTTTGTATAAT+TGG | - | chr7.1:53800480-53800499 | None:intergenic | 15.0% |
| !! | ATATCTTTATATGGTATGTT+TGG | + | chr7.1:53801026-53801045 | MS.gene050190:intron | 20.0% |
| !! | ATTAAAATTTCCACCAATAA+GGG | - | chr7.1:53801758-53801777 | None:intergenic | 20.0% |
| !! | GAAAACATGATCTTAAATTA+TGG | + | chr7.1:53801181-53801200 | MS.gene050190:intron | 20.0% |
| !! | GGTGTAAAAATATCTTTATA+TGG | + | chr7.1:53801017-53801036 | MS.gene050190:intron | 20.0% |
| !!! | AATTAAAGCCATTTTTTTTG+GGG | + | chr7.1:53800434-53800453 | MS.gene050190:intron | 20.0% |
| !!! | ATTGTTTCATTTATTTGCTA+AGG | + | chr7.1:53800379-53800398 | MS.gene050190:intron | 20.0% |
| !!! | CTCTTGTAATTTGTAATTTT+TGG | + | chr7.1:53801377-53801396 | MS.gene050190:intron | 20.0% |
| !!! | GATTTCTCTAAAAAGTTAAA+TGG | - | chr7.1:53800982-53801001 | None:intergenic | 20.0% |
| !!! | TAAGATCATGTTTTCAATTA+TGG | - | chr7.1:53801176-53801195 | None:intergenic | 20.0% |
| ! | AAACTCAAATTTCCATCTTT+AGG | - | chr7.1:53800661-53800680 | None:intergenic | 25.0% |
| ! | AATTAAATTGAACCTGTTTC+AGG | + | chr7.1:53801622-53801641 | MS.gene050190:intron | 25.0% |
| ! | AATTATTTACATTGCGACTA+TGG | - | chr7.1:53801208-53801227 | None:intergenic | 25.0% |
| ! | ACATAATCAAACAAAAACGA+AGG | + | chr7.1:53800521-53800540 | MS.gene050190:intron | 25.0% |
| ! | AGTGGATAATAATGTAGAAA+TGG | + | chr7.1:53800720-53800739 | MS.gene050190:CDS | 25.0% |
| ! | ATGATATTCTGGTACATAAT+TGG | - | chr7.1:53800066-53800085 | None:intergenic | 25.0% |
| ! | CATTAAAATTTCCACCAATA+AGG | - | chr7.1:53801759-53801778 | None:intergenic | 25.0% |
| ! | TCAATCATAGTTTCAAATTG+TGG | - | chr7.1:53801315-53801334 | None:intergenic | 25.0% |
| ! | TGATATTCTGGTACATAATT+GGG | - | chr7.1:53800065-53800084 | None:intergenic | 25.0% |
| ! | TGTAGAAATGGTATATAAAG+AGG | + | chr7.1:53800732-53800751 | MS.gene050190:CDS | 25.0% |
| ! | TGTGGTGATAAAAATTGTTT+CGG | - | chr7.1:53800504-53800523 | None:intergenic | 25.0% |
| ! | TTACACCTTAAAAATCAACA+TGG | - | chr7.1:53801004-53801023 | None:intergenic | 25.0% |
| ! | TTTAAGAGAAAACCAAAGTT+TGG | + | chr7.1:53800029-53800048 | MS.gene050190:CDS | 25.0% |
| ! | TTTAATGTATTAACCCATAG+TGG | + | chr7.1:53801772-53801791 | MS.gene050190:CDS | 25.0% |
| !! | TCGCAATGTAAATAATTTTG+AGG | + | chr7.1:53801211-53801230 | MS.gene050190:intron | 25.0% |
| !!! | ATTAAAGCCATTTTTTTTGG+GGG | + | chr7.1:53800435-53800454 | MS.gene050190:intron | 25.0% |
| !!! | GAAATCCATGTTGATTTTTA+AGG | + | chr7.1:53800996-53801015 | MS.gene050190:intron | 25.0% |
| !!! | TATGATTGATAGTGTACTTT+TGG | + | chr7.1:53801326-53801345 | MS.gene050190:intron | 25.0% |
| !!! | TTCGTTTTTGTTTGATTATG+TGG | - | chr7.1:53800522-53800541 | None:intergenic | 25.0% |
| AAATTGTTACATCAGGCTTA+AGG | + | chr7.1:53801113-53801132 | MS.gene050190:intron | 30.0% | |
| CATTGATCCTTCAAAAGTAA+AGG | + | chr7.1:53800350-53800369 | MS.gene050190:CDS | 30.0% | |
| GTAGATAAAGTGCAATATTG+TGG | + | chr7.1:53801691-53801710 | MS.gene050190:CDS | 30.0% | |
| TAAAAAAACACATGAACACG+CGG | - | chr7.1:53801269-53801288 | None:intergenic | 30.0% | |
| TTCATTCAAAAAAGATGTCG+TGG | + | chr7.1:53801669-53801688 | MS.gene050190:CDS | 30.0% | |
| ! | TCAAATTGTGGTTGTGTTTT+TGG | - | chr7.1:53801303-53801322 | None:intergenic | 30.0% |
| ! | TTGTGGCTTCTATATTTTCA+CGG | - | chr7.1:53801095-53801114 | None:intergenic | 30.0% |
| !! | AACTTGTTGTTTGTTACACA+TGG | + | chr7.1:53800935-53800954 | MS.gene050190:CDS | 30.0% |
| !! | TATCTGACCTTTACTTTTGA+AGG | - | chr7.1:53800360-53800379 | None:intergenic | 30.0% |
| !!! | TAATTTTTGGCTTTCTTCTC+TGG | + | chr7.1:53801390-53801409 | MS.gene050190:intron | 30.0% |
| !!! | TTAAAGCCATTTTTTTTGGG+GGG | + | chr7.1:53800436-53800455 | MS.gene050190:intron | 30.0% |
| AAGCCACAAATTGTTACATC+AGG | + | chr7.1:53801106-53801125 | MS.gene050190:intron | 35.0% | |
| AAGCCTGATGTAACAATTTG+TGG | - | chr7.1:53801112-53801131 | None:intergenic | 35.0% | |
| ACAAACAACAAGTTCTCAGT+AGG | - | chr7.1:53800929-53800948 | None:intergenic | 35.0% | |
| ACTAATCCCCCCAAAAAAAA+TGG | - | chr7.1:53800445-53800464 | None:intergenic | 35.0% | |
| ACTTTCACGAACATCGTTAA+CGG | - | chr7.1:53800310-53800329 | None:intergenic | 35.0% | |
| CAGTAGGATATTTATCTGCA+AGG | - | chr7.1:53800913-53800932 | None:intergenic | 35.0% | |
| CGATAACTTTGTACCTTCAT+GGG | + | chr7.1:53800110-53800129 | MS.gene050190:CDS | 35.0% | |
| CTCATACTAAATGCAAGAAC+AGG | - | chr7.1:53801596-53801615 | None:intergenic | 35.0% | |
| GAGTGATCTCTTTCGAAAAT+AGG | - | chr7.1:53801736-53801755 | None:intergenic | 35.0% | |
| TCGATAACTTTGTACCTTCA+TGG | + | chr7.1:53800109-53800128 | MS.gene050190:CDS | 35.0% | |
| ! | AAAACTGATTCTTCCCACTT+AGG | - | chr7.1:53800854-53800873 | None:intergenic | 35.0% |
| ! | AAGAATCAGTTTTGCAAGCT+AGG | + | chr7.1:53800861-53800880 | MS.gene050190:CDS | 35.0% |
| ! | AGAATCAGTTTTGCAAGCTA+GGG | + | chr7.1:53800862-53800881 | MS.gene050190:CDS | 35.0% |
| !!! | TATGGCTACGTTTGTTTTAG+CGG | - | chr7.1:53801158-53801177 | None:intergenic | 35.0% |
| AATATCATCGTGATGAGGCA+TGG | + | chr7.1:53800078-53800097 | MS.gene050190:CDS | 40.0% | |
| ACCAGAATATCATCGTGATG+AGG | + | chr7.1:53800073-53800092 | MS.gene050190:CDS | 40.0% | |
| AGAGAGAGCAATAACGAGTT+CGG | - | chr7.1:53800286-53800305 | None:intergenic | 40.0% | |
| AGGTTCGAGCATTTCAGATA+GGG | + | chr7.1:53800181-53800200 | MS.gene050190:CDS | 40.0% | |
| CTCAATGTTGCTCCTAAAGA+TGG | + | chr7.1:53800646-53800665 | MS.gene050190:CDS | 40.0% | |
| GAAAGAGATCACTCCCTTAT+TGG | + | chr7.1:53801742-53801761 | MS.gene050190:CDS | 40.0% | |
| GAGACAATGAGTCGATGTAT+TGG | - | chr7.1:53800234-53800253 | None:intergenic | 40.0% | |
| TAACCCATAGTGGTCAAAGT+GGG | + | chr7.1:53801782-53801801 | MS.gene050190:CDS | 40.0% | |
| TCAATTCCTTCACCTGAAAC+AGG | - | chr7.1:53801637-53801656 | None:intergenic | 40.0% | |
| TCTGGTACATAATTGGGTGT+TGG | - | chr7.1:53800059-53800078 | None:intergenic | 40.0% | |
| TGCAATTTCGACGTCATTGT+GGG | - | chr7.1:53801239-53801258 | None:intergenic | 40.0% | |
| TTAACCCATAGTGGTCAAAG+TGG | + | chr7.1:53801781-53801800 | MS.gene050190:CDS | 40.0% | |
| TTCAGGTGAAGGAATTGAAG+TGG | + | chr7.1:53801639-53801658 | MS.gene050190:intron | 40.0% | |
| TTCTCTGGTAAACCTTGTGT+CGG | + | chr7.1:53801405-53801424 | MS.gene050190:intron | 40.0% | |
| TTGCAATTTCGACGTCATTG+TGG | - | chr7.1:53801240-53801259 | None:intergenic | 40.0% | |
| TTGGAAGACCAAGACTTTGT+CGG | - | chr7.1:53800215-53800234 | None:intergenic | 40.0% | |
| ! | ATTGAACCTGTTTCAGGTGA+AGG | + | chr7.1:53801628-53801647 | MS.gene050190:intron | 40.0% |
| ! | CAAAGTATCCGACAAAGTCT+TGG | + | chr7.1:53800204-53800223 | MS.gene050190:CDS | 40.0% |
| !!! | GGTGTTGGTTTTCCAAACTT+TGG | - | chr7.1:53800044-53800063 | None:intergenic | 40.0% |
| AACCCATAGTGGTCAAAGTG+GGG | + | chr7.1:53801783-53801802 | MS.gene050190:CDS | 45.0% | |
| AGAGATCACTCCCTTATTGG+TGG | + | chr7.1:53801745-53801764 | MS.gene050190:CDS | 45.0% | |
| ATAAACCTCAGCTGCCTAAG+TGG | + | chr7.1:53800837-53800856 | MS.gene050190:intron | 45.0% | |
| CAGGTTCGAGCATTTCAGAT+AGG | + | chr7.1:53800180-53800199 | MS.gene050190:CDS | 45.0% | |
| GCAATTTCGACGTCATTGTG+GGG | - | chr7.1:53801238-53801257 | None:intergenic | 45.0% | |
| GCCTCATCACGATGATATTC+TGG | - | chr7.1:53800077-53800096 | None:intergenic | 45.0% | |
| TAAACCTCAGCTGCCTAAGT+GGG | + | chr7.1:53800838-53800857 | MS.gene050190:intron | 45.0% | |
| TATTATCCACTGTCCCAGCT+GGG | - | chr7.1:53800711-53800730 | None:intergenic | 45.0% | |
| TCAAGAGAGACCTGCAATTG+TGG | - | chr7.1:53800586-53800605 | None:intergenic | 45.0% | |
| TCTCTGGTAAACCTTGTGTC+GGG | + | chr7.1:53801406-53801425 | MS.gene050190:intron | 45.0% | |
| TCTGGATGCAGCGAAGAAAT+GGG | - | chr7.1:53800257-53800276 | None:intergenic | 45.0% | |
| TTATTATCCACTGTCCCAGC+TGG | - | chr7.1:53800712-53800731 | None:intergenic | 45.0% | |
| TTGCAGGTCTCTCTTGAGTA+TGG | + | chr7.1:53800589-53800608 | MS.gene050190:intron | 45.0% | |
| ! | CTATCTGAAATGCTCGAACC+TGG | - | chr7.1:53800182-53800201 | None:intergenic | 45.0% |
| !!! | GCTACGTTTGTTTTAGCGGT+AGG | - | chr7.1:53801154-53801173 | None:intergenic | 45.0% |
| CACCCCACTTTGACCACTAT+GGG | - | chr7.1:53801788-53801807 | None:intergenic | 50.0% | |
| CAGGCTTAAGGTGTGTTGAG+TGG | + | chr7.1:53801125-53801144 | MS.gene050190:intron | 50.0% | |
| CTGGATGCAGCGAAGAAATG+GGG | - | chr7.1:53800256-53800275 | None:intergenic | 50.0% | |
| GTCTGGATGCAGCGAAGAAA+TGG | - | chr7.1:53800258-53800277 | None:intergenic | 50.0% | |
| TCACCCCACTTTGACCACTA+TGG | - | chr7.1:53801789-53801808 | None:intergenic | 50.0% | |
| TGTACCTTCATGGGCATCCA+CGG | + | chr7.1:53800119-53800138 | MS.gene050190:CDS | 50.0% | |
| TTCCTCGCTTCCACAATTGC+AGG | + | chr7.1:53800573-53800592 | MS.gene050190:intron | 50.0% | |
| ACGACTATCCTCCCGACACA+AGG | - | chr7.1:53801420-53801439 | None:intergenic | 55.0% | |
| CTGGTAAACCTTGTGTCGGG+AGG | + | chr7.1:53801409-53801428 | MS.gene050190:intron | 55.0% | |
| GACCTGCAATTGTGGAAGCG+AGG | - | chr7.1:53800578-53800597 | None:intergenic | 55.0% | |
| GTGTCGGGAGGATAGTCGTT+TGG | + | chr7.1:53801421-53801440 | MS.gene050190:intron | 55.0% | |
| TAACGAGTTCGGCAGCAGTC+TGG | - | chr7.1:53800275-53800294 | None:intergenic | 55.0% | |
| TCTTCCCACTTAGGCAGCTG+AGG | - | chr7.1:53800845-53800864 | None:intergenic | 55.0% | |
| TGAAATGCTCGAACCTGGCC+CGG | - | chr7.1:53800177-53800196 | None:intergenic | 55.0% | |
| GATCCTCCGTTGACCCAACC+GGG | + | chr7.1:53800156-53800175 | MS.gene050190:CDS | 60.0% | |
| GGATCCTCCGTTGACCCAAC+CGG | + | chr7.1:53800155-53800174 | MS.gene050190:CDS | 60.0% | |
| TGGGTCAACGGAGGATCCCA+GGG | - | chr7.1:53800153-53800172 | None:intergenic | 60.0% | |
| TTGCAGCCATGCTCCCAGCT+GGG | + | chr7.1:53800695-53800714 | MS.gene050190:CDS | 60.0% | |
| TTGGGTCAACGGAGGATCCC+AGG | - | chr7.1:53800154-53800173 | None:intergenic | 60.0% | |
| ACCTGGCCCGGTTGGGTCAA+CGG | - | chr7.1:53800165-53800184 | None:intergenic | 65.0% | |
| ATGCTCGAACCTGGCCCGGT+TGG | - | chr7.1:53800173-53800192 | None:intergenic | 65.0% | |
| CACTGTCCCAGCTGGGAGCA+TGG | - | chr7.1:53800704-53800723 | None:intergenic | 65.0% | |
| CATGCTCCCAGCTGGGACAG+TGG | + | chr7.1:53800702-53800721 | MS.gene050190:CDS | 65.0% | |
| CTTGCAGCCATGCTCCCAGC+TGG | + | chr7.1:53800694-53800713 | MS.gene050190:CDS | 65.0% | |
| TGCTCGAACCTGGCCCGGTT+GGG | - | chr7.1:53800172-53800191 | None:intergenic | 65.0% | |
| CATGGGCATCCACGGCCGCA+CGG | + | chr7.1:53800127-53800146 | MS.gene050190:CDS | 70.0% | |
| GCGGCCGTGGATGCCCATGA+AGG | - | chr7.1:53800126-53800145 | None:intergenic | 70.0% | |
| TCCGTTGACCCAACCGGGCC+AGG | + | chr7.1:53800161-53800180 | MS.gene050190:CDS | 70.0% | |
| TGGCCCGGTTGGGTCAACGG+AGG | - | chr7.1:53800162-53800181 | None:intergenic | 70.0% | |
| ATCCACGGCCGCACGGCCCT+GGG | + | chr7.1:53800134-53800153 | MS.gene050190:CDS | 75.0% | |
| CGGAGGATCCCAGGGCCGTG+CGG | - | chr7.1:53800145-53800164 | None:intergenic | 75.0% | |
| ! | ATCCCAGGGCCGTGCGGCCG+TGG | - | chr7.1:53800139-53800158 | None:intergenic | 80.0% |
| ! | CATCCACGGCCGCACGGCCC+TGG | + | chr7.1:53800133-53800152 | MS.gene050190:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 53800024 | 53801825 | 53800024 | ID=MS.gene050190 |
| chr7.1 | mRNA | 53800024 | 53801825 | 53800024 | ID=MS.gene050190.t1;Parent=MS.gene050190 |
| chr7.1 | exon | 53800024 | 53800371 | 53800024 | ID=MS.gene050190.t1.exon1;Parent=MS.gene050190.t1 |
| chr7.1 | CDS | 53800024 | 53800371 | 53800024 | ID=cds.MS.gene050190.t1;Parent=MS.gene050190.t1 |
| chr7.1 | exon | 53800595 | 53800753 | 53800595 | ID=MS.gene050190.t1.exon2;Parent=MS.gene050190.t1 |
| chr7.1 | CDS | 53800595 | 53800753 | 53800595 | ID=cds.MS.gene050190.t1;Parent=MS.gene050190.t1 |
| chr7.1 | exon | 53800848 | 53800956 | 53800848 | ID=MS.gene050190.t1.exon3;Parent=MS.gene050190.t1 |
| chr7.1 | CDS | 53800848 | 53800956 | 53800848 | ID=cds.MS.gene050190.t1;Parent=MS.gene050190.t1 |
| chr7.1 | exon | 53801644 | 53801825 | 53801644 | ID=MS.gene050190.t1.exon4;Parent=MS.gene050190.t1 |
| chr7.1 | CDS | 53801644 | 53801825 | 53801644 | ID=cds.MS.gene050190.t1;Parent=MS.gene050190.t1 |
| Gene Sequence |
| Protein sequence |
