AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene56725

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56725.t1 MTR_6g009520 90.996 522 33 2 1 510 1 520 0.0 900
MS.gene56725.t1 MTR_6g009540 84.038 520 69 2 3 510 1 518 0.0 827
MS.gene56725.t1 MTR_6g009720 75.053 473 100 4 1 460 1 468 0.0 706
MS.gene56725.t1 MTR_6g009553 76.159 453 89 3 25 462 1 449 0.0 690
MS.gene56725.t1 MTR_6g009770 73.053 475 88 6 1 462 1 448 0.0 677
MS.gene56725.t1 MTR_7g008040 67.603 463 141 5 5 461 1 460 0.0 641
MS.gene56725.t1 MTR_6g042290 67.665 501 137 6 12 510 21 498 0.0 639
MS.gene56725.t1 MTR_6g009510 66.467 501 97 6 11 510 20 450 0.0 596
MS.gene56725.t1 MTR_4g107370 60.421 475 171 7 7 469 8 477 0.0 581
MS.gene56725.t1 MTR_6g009660 63.065 509 116 10 3 501 1 447 0.0 580
MS.gene56725.t1 MTR_1g022250 59.499 479 175 6 3 477 1 464 0.0 576
MS.gene56725.t1 MTR_2g030420 57.627 472 183 5 7 478 8 462 0.0 556
MS.gene56725.t1 MTR_1g022245 52.586 464 204 5 7 460 3 460 2.11e-172 496
MS.gene56725.t1 MTR_4g128260 43.038 474 253 6 7 472 3 467 6.65e-126 377
MS.gene56725.t1 MTR_5g020980 37.903 496 266 8 8 491 13 478 1.58e-113 345
MS.gene56725.t1 MTR_2g076970 39.044 502 255 11 12 507 7 463 4.55e-109 332
MS.gene56725.t1 MTR_2g076710 40.764 471 227 14 14 470 14 446 1.47e-107 328
MS.gene56725.t1 MTR_2g076920 39.087 504 252 12 12 507 13 469 8.67e-107 327
MS.gene56725.t1 MTR_2g076690 40.959 459 225 11 29 482 39 456 1.87e-105 323
MS.gene56725.t1 MTR_2g061820 39.503 443 242 9 5 441 4 426 7.78e-105 323
MS.gene56725.t1 MTR_2g076840 40.899 467 233 10 12 472 7 436 7.88e-104 327
MS.gene56725.t1 MTR_2g076840 49.474 285 112 6 180 462 450 704 1.73e-85 279
MS.gene56725.t1 MTR_8g076920 37.866 478 266 9 8 481 23 473 1.83e-103 319
MS.gene56725.t1 MTR_2g076900 38.972 467 249 10 12 472 7 443 1.34e-101 313
MS.gene56725.t1 MTR_2g076990 41.889 413 200 9 65 469 1 381 5.83e-101 311
MS.gene56725.t1 MTR_5g020990 36.983 484 270 12 3 472 19 481 1.84e-91 288
MS.gene56725.t1 MTR_3g103150 43.854 301 140 4 162 461 4 276 1.28e-81 255
MS.gene56725.t1 MTR_3g092060 30.172 464 265 11 8 462 2 415 2.84e-65 219
MS.gene56725.t1 MTR_7g117950 33.854 384 194 10 63 441 59 387 5.30e-65 218
MS.gene56725.t1 MTR_5g021020 37.855 317 150 7 146 461 135 405 5.28e-57 195
MS.gene56725.t1 MTR_8g027200 27.740 447 245 13 40 480 35 409 3.44e-50 178
MS.gene56725.t1 MTR_1g011680 60.741 135 48 3 328 460 2 133 5.04e-42 148
MS.gene56725.t1 MTR_5g021000 50.926 108 49 2 355 461 1 105 1.01e-29 114
MS.gene56725.t1 MTR_5g020720 40.331 181 88 5 268 447 25 186 2.37e-27 108
MS.gene56725.t1 MTR_1g113750 47.500 120 54 3 388 507 16 126 4.73e-22 92.0
MS.gene56725.t1 MTR_5g021010 47.253 91 44 2 372 461 34 121 1.13e-16 76.6
MS.gene56725.t1 MTR_7g096060 30.270 185 98 7 218 394 250 411 2.56e-12 69.7
MS.gene56725.t1 MTR_6g059690 27.907 301 165 14 205 480 194 467 2.34e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene56725.t1 AT5G40010 62.391 460 163 5 5 457 4 460 0.0 582
MS.gene56725.t1 AT3G28580 61.388 461 161 8 5 457 4 455 0.0 549
MS.gene56725.t1 AT3G28510 58.785 461 188 2 6 466 5 463 0.0 530
MS.gene56725.t1 AT3G28580 58.079 458 159 7 5 457 4 433 5.77e-176 504
MS.gene56725.t1 AT3G28540 56.803 463 179 8 6 459 5 455 2.84e-170 490
MS.gene56725.t1 AT3G28540 56.803 463 179 8 6 459 5 455 3.07e-170 490
MS.gene56725.t1 AT3G28610 50.936 481 177 10 10 465 4 450 6.40e-165 476
MS.gene56725.t1 AT3G28600 50.939 479 192 9 1 465 1 450 3.51e-162 469
MS.gene56725.t1 AT5G40000 49.053 475 199 9 3 461 2 449 2.11e-155 451
MS.gene56725.t1 AT3G28520 55.094 481 193 9 17 487 2 469 4.67e-153 446
MS.gene56725.t1 AT3G28570 47.835 462 196 8 10 461 7 433 2.97e-145 424
MS.gene56725.t1 AT3G28570 47.312 465 194 8 10 461 14 440 5.32e-145 424
MS.gene56725.t1 AT3G28600 48.017 479 167 9 1 465 1 411 1.33e-143 420
MS.gene56725.t1 AT5G57480 39.020 510 287 8 7 506 3 498 1.18e-123 372
MS.gene56725.t1 AT4G25835 40.842 475 268 7 7 477 3 468 2.22e-122 368
MS.gene56725.t1 AT4G30250 40.552 471 258 8 3 461 1 461 6.38e-115 349
MS.gene56725.t1 AT4G30250 40.512 469 257 8 5 461 1 459 1.77e-114 348
MS.gene56725.t1 AT3G50940 40.090 444 225 9 33 471 44 451 7.08e-109 332
MS.gene56725.t1 AT3G50930 41.009 456 231 11 63 509 114 540 4.67e-107 331
MS.gene56725.t1 AT2G18193 39.004 482 255 10 13 491 19 464 1.68e-103 319
MS.gene56725.t1 AT5G17760 40.444 450 214 9 68 492 72 492 4.66e-103 318
MS.gene56725.t1 AT4G05380 38.994 477 259 11 4 475 11 460 3.07e-101 312
MS.gene56725.t1 AT5G17740 36.842 494 273 11 6 485 11 479 2.15e-100 312
MS.gene56725.t1 AT5G17730 36.382 492 266 12 5 482 10 468 2.09e-99 308
MS.gene56725.t1 AT2G18190 37.447 470 258 10 8 469 15 456 2.08e-95 298
MS.gene56725.t1 AT1G43910 38.055 473 263 10 4 471 10 457 1.57e-94 295
MS.gene56725.t1 AT5G17750 34.965 429 218 10 8 426 13 390 1.15e-83 265
MS.gene56725.t1 AT2G46620 30.952 462 268 8 5 461 1 416 2.27e-69 230
MS.gene56725.t1 AT5G17760 37.786 262 137 4 68 314 72 322 7.15e-53 182
MS.gene56725.t1 AT3G28560 42.593 216 114 4 6 219 5 212 3.05e-47 165
MS.gene56725.t1 AT3G29800 32.500 320 166 7 143 458 104 377 6.34e-46 166
MS.gene56725.t1 AT4G05340 52.083 96 40 1 317 412 4 93 5.96e-24 96.3
MS.gene56725.t1 AT1G09100 33.898 177 84 6 234 401 193 345 1.40e-13 73.2
MS.gene56725.t1 AT3G05530 33.333 177 85 6 234 401 194 346 5.36e-13 71.2
MS.gene56725.t1 AT4G28000 29.282 181 95 6 246 418 555 710 9.64e-11 65.1
MS.gene56725.t1 AT4G28000 29.282 181 95 6 246 418 553 708 9.80e-11 65.1

Find 76 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAGTAAGGTAACTCTTTC+TGG 0.086559 6.2:-5138009 MS.gene56725:CDS
AAACGTGGTTATCTACTTTA+TGG 0.185533 6.2:-5138303 MS.gene56725:CDS
CAAAGTATGAAGATGGGAAT+TGG 0.285135 6.2:-5139041 None:intergenic
ATGGTAGACTTTCCAGTTCC+TGG 0.297845 6.2:+5138276 None:intergenic
TTTGAGCATCCTGCAAGATT+TGG 0.298067 6.2:-5138426 MS.gene56725:CDS
TCTTGAGATTGCAAAGAAAA+AGG 0.305733 6.2:-5137659 MS.gene56725:CDS
TGAGGAGGAAGCAAGGAAAA+AGG 0.320155 6.2:-5137635 MS.gene56725:CDS
ATAAAGTTTCATGAGTTATC+AGG 0.325799 6.2:-5138873 MS.gene56725:CDS
AAAGTATGAAGATGGGAATT+GGG 0.332092 6.2:-5139040 None:intergenic
CCAACAACCCTAGTAGTAAT+TGG 0.339715 6.2:-5138485 MS.gene56725:CDS
AACTTGATCCTGCTCTTATA+AGG 0.349513 6.2:-5137906 MS.gene56725:CDS
AATGGATAAGCATATAGAAA+TGG 0.384738 6.2:-5137875 MS.gene56725:CDS
TTGTAGCTATCAAGCTTTCA+AGG 0.388003 6.2:-5137848 MS.gene56725:CDS
TCCAATTATTGAAAAGTTGT+TGG 0.390561 6.2:-5137779 MS.gene56725:CDS
CCAATTATTGAAAAGTTGTT+GGG 0.400795 6.2:-5137778 MS.gene56725:CDS
GCTAGGGTTCCAAATCTTGC+AGG 0.402544 6.2:+5138417 None:intergenic
AAAAGGATGAGGAGGAAGCA+AGG 0.404612 6.2:-5137642 MS.gene56725:CDS
AGTTCAATGGAGTCAAAGTT+TGG 0.406209 6.2:-5138695 MS.gene56725:CDS
TTCTTTCTTCTTCCTTTGCC+CGG 0.416876 6.2:+5138101 None:intergenic
CTTTATGGTCCACCAGGAAC+TGG 0.417256 6.2:-5138288 MS.gene56725:CDS
AAATCTTCAGTGATTGACTT+TGG 0.418717 6.2:+5137712 None:intergenic
TGAAACTTTATGTTGATGTA+TGG 0.421952 6.2:+5138885 None:intergenic
AACATTTCAAAGTATGAAGA+TGG 0.422358 6.2:-5139048 None:intergenic
CAACACATGTTGAATGTAAG+AGG 0.425064 6.2:+5138557 None:intergenic
TACATCCACCAATTACTACT+AGG 0.426977 6.2:+5138477 None:intergenic
CCAATTACTACTAGGGTTGT+TGG 0.427886 6.2:+5138485 None:intergenic
CTCTTACATTCAACATGTGT+TGG 0.428090 6.2:-5138556 MS.gene56725:CDS
AAAGAGTATTATGCTAAAGT+TGG 0.429304 6.2:-5138336 MS.gene56725:CDS
TCTTGAGTTAACAACTGTTA+AGG 0.446059 6.2:-5138211 MS.gene56725:CDS
AGTTTGCACTAAGATATGTT+TGG 0.446804 6.2:+5138814 None:intergenic
ATTCAACATGTGTTGGATGA+AGG 0.453587 6.2:-5138549 MS.gene56725:CDS
GATCTTCTTAAGTTCAAGAA+AGG 0.458025 6.2:-5138360 MS.gene56725:CDS
AGATGGGAATTGGGGAACTA+TGG 0.460698 6.2:-5139031 MS.gene56725:CDS
AGAAAACATGCACGAAGATA+AGG 0.463426 6.2:+5138942 None:intergenic
ATGGATAAGCATATAGAAAT+GGG 0.469052 6.2:-5137874 MS.gene56725:CDS
ATGCTAAAGTTGGAAAAGCT+TGG 0.482796 6.2:-5138326 MS.gene56725:CDS
TTCAACATGTGTTGGATGAA+GGG 0.485677 6.2:-5138548 MS.gene56725:CDS
ATTGACTCAAGAGGAAGAAA+AGG 0.488311 6.2:-5137560 MS.gene56725:CDS
AAGCTATTATGAGCAAGAAT+AGG 0.501969 6.2:-5138524 MS.gene56725:CDS
CTCTCGATCTCACCGGGCAA+AGG 0.502496 6.2:-5138113 MS.gene56725:CDS
GATTGTTCTCTCGATCTCAC+CGG 0.518830 6.2:-5138120 MS.gene56725:CDS
CTGCCCCTCCTTATAAGAGC+AGG 0.522643 6.2:+5137898 None:intergenic
ATTTGCTATAGCTGATATCA+TGG 0.523985 6.2:+5138257 None:intergenic
AAATTCTCAGCAACATCAGC+AGG 0.526229 6.2:+5137739 None:intergenic
GAAATCATAGATGAGTTCAA+TGG 0.530945 6.2:-5138708 MS.gene56725:CDS
TCAAGAGGAAGAAAAGGTTA+AGG 0.538611 6.2:-5137554 MS.gene56725:CDS
ACATCCACCAATTACTACTA+GGG 0.539649 6.2:+5138478 None:intergenic
TCATCCATGCTTAGAACAAG+TGG 0.540829 6.2:+5138738 None:intergenic
ATTGTTCTCTCGATCTCACC+GGG 0.546404 6.2:-5138119 MS.gene56725:CDS
GATGGAATTTGGTCAGCTTG+TGG 0.549571 6.2:-5137970 MS.gene56725:CDS
GTTGGAAAAGCTTGGAAACG+TGG 0.566291 6.2:-5138318 MS.gene56725:CDS
CAACTAGGTTCAATCACGGC+TGG 0.570804 6.2:-5139005 MS.gene56725:CDS
CATCCATGCTTAGAACAAGT+GGG 0.570942 6.2:+5138739 None:intergenic
TGATGAGAATGATGAAAAGA+AGG 0.571153 6.2:-5138067 MS.gene56725:CDS
AACCCCACTTGTTCTAAGCA+TGG 0.576665 6.2:-5138742 MS.gene56725:CDS
GTTAAGGTTGAGAAAGACAA+TGG 0.577980 6.2:-5137538 MS.gene56725:CDS
AAACATGCACGAAGATAAGG+TGG 0.578635 6.2:+5138945 None:intergenic
TCTTATAAGGAGGGGCAGAA+TGG 0.583204 6.2:-5137893 MS.gene56725:CDS
AAGTATGAAGATGGGAATTG+GGG 0.585836 6.2:-5139039 None:intergenic
TGATCCTGCTCTTATAAGGA+GGG 0.590776 6.2:-5137902 MS.gene56725:CDS
TCAATGGAGTCAAAGTTTGG+TGG 0.596166 6.2:-5138692 MS.gene56725:CDS
ACATTTCAAAGTATGAAGAT+GGG 0.598757 6.2:-5139047 None:intergenic
TTGATCCTGCTCTTATAAGG+AGG 0.600009 6.2:-5137903 MS.gene56725:CDS
GGATGAGGAAGCTCGGCTCA+AGG 0.601592 6.2:-5137608 MS.gene56725:CDS
GTAGACTTTCCAGTTCCTGG+TGG 0.611663 6.2:+5138279 None:intergenic
AGGTAGAGGATGAGGAAGCT+CGG 0.611983 6.2:-5137615 MS.gene56725:CDS
TATCTACTTTATGGTCCACC+AGG 0.617929 6.2:-5138294 MS.gene56725:CDS
GGGGAACTATGGTCACAACT+AGG 0.620126 6.2:-5139020 MS.gene56725:CDS
AAGATTTGGAACCCTAGCTA+TGG 0.624596 6.2:-5138412 MS.gene56725:CDS
ACAACCCTAGTAGTAATTGG+TGG 0.629329 6.2:-5138482 MS.gene56725:CDS
ATCCATGCTTAGAACAAGTG+GGG 0.634090 6.2:+5138740 None:intergenic
GTCACAACTAGGTTCAATCA+CGG 0.654145 6.2:-5139009 MS.gene56725:CDS
GATCCTGCTCTTATAAGGAG+GGG 0.658044 6.2:-5137901 MS.gene56725:CDS
GGATGTATAAAAGCACAAAG+TGG 0.671130 6.2:-5138461 MS.gene56725:CDS
GGTCAGCTTGTGGATCAGAG+AGG 0.714357 6.2:-5137960 MS.gene56725:CDS
AACATGCACGAAGATAAGGT+GGG 0.716780 6.2:+5138946 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTCACAACAAATTTTG+TGG - chr6.2:5138628-5138647 MS.gene56725:CDS 20.0%
!!! TGAATTTTATTGATGGAATT+TGG - chr6.2:5138579-5138598 MS.gene56725:CDS 20.0%
! AATGGATAAGCATATAGAAA+TGG - chr6.2:5138685-5138704 MS.gene56725:CDS 25.0%
! AGAAGAGAAAAATGAAAGTA+AGG - chr6.2:5138538-5138557 MS.gene56725:CDS 25.0%
! ATAAAGTTTCATGAGTTATC+AGG - chr6.2:5137687-5137706 MS.gene56725:CDS 25.0%
! ATGGATAAGCATATAGAAAT+GGG - chr6.2:5138686-5138705 MS.gene56725:CDS 25.0%
! CCAATTATTGAAAAGTTGTT+GGG - chr6.2:5138782-5138801 MS.gene56725:CDS 25.0%
! TCCAATTATTGAAAAGTTGT+TGG - chr6.2:5138781-5138800 MS.gene56725:CDS 25.0%
! TGAAACTTTATGTTGATGTA+TGG + chr6.2:5137678-5137697 None:intergenic 25.0%
!! AGAAAATGATTGTGATTTTG+AGG + chr6.2:5137910-5137929 None:intergenic 25.0%
!!! AAAGAGTATTATGCTAAAGT+TGG - chr6.2:5138224-5138243 MS.gene56725:CDS 25.0%
!!! AATCTTTTTTCATCTGAAGT+AGG + chr6.2:5137939-5137958 None:intergenic 25.0%
!!! TCTTTTTCAGCTTTCTTAAT+AGG + chr6.2:5138521-5138540 None:intergenic 25.0%
AAACGTGGTTATCTACTTTA+TGG - chr6.2:5138257-5138276 MS.gene56725:CDS 30.0%
AAGCTATTATGAGCAAGAAT+AGG - chr6.2:5138036-5138055 MS.gene56725:CDS 30.0%
AGTTTGCACTAAGATATGTT+TGG + chr6.2:5137749-5137768 None:intergenic 30.0%
GAAATCATAGATGAGTTCAA+TGG - chr6.2:5137852-5137871 MS.gene56725:CDS 30.0%
GATCTTCTTAAGTTCAAGAA+AGG - chr6.2:5138200-5138219 MS.gene56725:CDS 30.0%
TCTTGAGATTGCAAAGAAAA+AGG - chr6.2:5138901-5138920 MS.gene56725:CDS 30.0%
TCTTGAGTTAACAACTGTTA+AGG - chr6.2:5138349-5138368 MS.gene56725:CDS 30.0%
TGATGAGAATGATGAAAAGA+AGG - chr6.2:5138493-5138512 MS.gene56725:CDS 30.0%
TGGGAAAAATTTGTCAAACA+TGG + chr6.2:5137598-5137617 None:intergenic 30.0%
! AAATCTTCAGTGATTGACTT+TGG + chr6.2:5138851-5138870 None:intergenic 30.0%
! AGAATCTCTTCTTTCTTTTC+TGG + chr6.2:5138176-5138195 None:intergenic 30.0%
! CCCAACAACTTTTCAATAAT+TGG + chr6.2:5138785-5138804 None:intergenic 30.0%
! GAAACAAAAATTGACTCAAG+AGG - chr6.2:5138991-5139010 MS.gene56725:CDS 30.0%
!! AAATGATTGTGATTTTGAGG+TGG + chr6.2:5137907-5137926 None:intergenic 30.0%
!! ATGCTTTTTGTGGAAAGTTA+GGG + chr6.2:5137967-5137986 None:intergenic 30.0%
!! ATTTGCTATAGCTGATATCA+TGG + chr6.2:5138306-5138325 None:intergenic 30.0%
!!! GGTTTGCTGAATTTTATTGA+TGG - chr6.2:5138572-5138591 MS.gene56725:CDS 30.0%
AACTTGATCCTGCTCTTATA+AGG - chr6.2:5138654-5138673 MS.gene56725:CDS 35.0%
ACATCCACCAATTACTACTA+GGG + chr6.2:5138085-5138104 None:intergenic 35.0%
AGAAAACATGCACGAAGATA+AGG + chr6.2:5137621-5137640 None:intergenic 35.0%
AGTTCAATGGAGTCAAAGTT+TGG - chr6.2:5137865-5137884 MS.gene56725:CDS 35.0%
ATGCTAAAGTTGGAAAAGCT+TGG - chr6.2:5138234-5138253 MS.gene56725:CDS 35.0%
ATTCAACATGTGTTGGATGA+AGG - chr6.2:5138011-5138030 MS.gene56725:CDS 35.0%
CAACACATGTTGAATGTAAG+AGG + chr6.2:5138006-5138025 None:intergenic 35.0%
CTCTTACATTCAACATGTGT+TGG - chr6.2:5138004-5138023 MS.gene56725:CDS 35.0%
GAAAGTAAGGTAACTCTTTC+TGG - chr6.2:5138551-5138570 MS.gene56725:CDS 35.0%
GATTGCAAAGAAAAAGGATG+AGG - chr6.2:5138907-5138926 MS.gene56725:CDS 35.0%
GTTAAGGTTGAGAAAGACAA+TGG - chr6.2:5139022-5139041 MS.gene56725:CDS 35.0%
TACATCCACCAATTACTACT+AGG + chr6.2:5138086-5138105 None:intergenic 35.0%
TCAAGAGGAAGAAAAGGTTA+AGG - chr6.2:5139006-5139025 MS.gene56725:CDS 35.0%
TTCAACATGTGTTGGATGAA+GGG - chr6.2:5138012-5138031 MS.gene56725:CDS 35.0%
TTGTAGCTATCAAGCTTTCA+AGG - chr6.2:5138712-5138731 MS.gene56725:CDS 35.0%
! ATTGACTCAAGAGGAAGAAA+AGG - chr6.2:5139000-5139019 MS.gene56725:CDS 35.0%
! GGATGTATAAAAGCACAAAG+TGG - chr6.2:5138099-5138118 MS.gene56725:CDS 35.0%
!! GATGCTTTTTGTGGAAAGTT+AGG + chr6.2:5137968-5137987 None:intergenic 35.0%
AAACATGCACGAAGATAAGG+TGG + chr6.2:5137618-5137637 None:intergenic 40.0%
AAATTCTCAGCAACATCAGC+AGG + chr6.2:5138824-5138843 None:intergenic 40.0%
AACATGCACGAAGATAAGGT+GGG + chr6.2:5137617-5137636 None:intergenic 40.0%
AAGGAAAAAGGTAGAGGATG+AGG - chr6.2:5138937-5138956 MS.gene56725:CDS 40.0%
ACAACCCTAGTAGTAATTGG+TGG - chr6.2:5138078-5138097 MS.gene56725:CDS 40.0%
ATCCATGCTTAGAACAAGTG+GGG + chr6.2:5137823-5137842 None:intergenic 40.0%
CATCCATGCTTAGAACAAGT+GGG + chr6.2:5137824-5137843 None:intergenic 40.0%
CCAACAACCCTAGTAGTAAT+TGG - chr6.2:5138075-5138094 MS.gene56725:CDS 40.0%
CCAATTACTACTAGGGTTGT+TGG + chr6.2:5138078-5138097 None:intergenic 40.0%
GTCACAACTAGGTTCAATCA+CGG - chr6.2:5137551-5137570 MS.gene56725:CDS 40.0%
TATCTACTTTATGGTCCACC+AGG - chr6.2:5138266-5138285 MS.gene56725:CDS 40.0%
TCAATGGAGTCAAAGTTTGG+TGG - chr6.2:5137868-5137887 MS.gene56725:CDS 40.0%
TCATCCATGCTTAGAACAAG+TGG + chr6.2:5137825-5137844 None:intergenic 40.0%
TGATCCTGCTCTTATAAGGA+GGG - chr6.2:5138658-5138677 MS.gene56725:CDS 40.0%
TGCAAAGAAAAAGGATGAGG+AGG - chr6.2:5138910-5138929 MS.gene56725:CDS 40.0%
TTCTTTCTTCTTCCTTTGCC+CGG + chr6.2:5138462-5138481 None:intergenic 40.0%
TTGATCCTGCTCTTATAAGG+AGG - chr6.2:5138657-5138676 MS.gene56725:CDS 40.0%
TTTGAGCATCCTGCAAGATT+TGG - chr6.2:5138134-5138153 MS.gene56725:CDS 40.0%
! AAGATTTGGAACCCTAGCTA+TGG - chr6.2:5138148-5138167 MS.gene56725:CDS 40.0%
!! TGAGTTCACGATGCTTTTTG+TGG + chr6.2:5137977-5137996 None:intergenic 40.0%
!!! CTTTTCTGGTTCCATAGCTA+GGG + chr6.2:5138162-5138181 None:intergenic 40.0%
!!! TCTTTTCTGGTTCCATAGCT+AGG + chr6.2:5138163-5138182 None:intergenic 40.0%
AAAAGGATGAGGAGGAAGCA+AGG - chr6.2:5138918-5138937 MS.gene56725:CDS 45.0%
AGATGGGAATTGGGGAACTA+TGG - chr6.2:5137529-5137548 MS.gene56725:CDS 45.0%
ATGGTAGACTTTCCAGTTCC+TGG + chr6.2:5138287-5138306 None:intergenic 45.0%
ATTGTTCTCTCGATCTCACC+GGG - chr6.2:5138441-5138460 MS.gene56725:CDS 45.0%
GATCCTGCTCTTATAAGGAG+GGG - chr6.2:5138659-5138678 MS.gene56725:CDS 45.0%
GATGGAATTTGGTCAGCTTG+TGG - chr6.2:5138590-5138609 MS.gene56725:CDS 45.0%
GATTGTTCTCTCGATCTCAC+CGG - chr6.2:5138440-5138459 MS.gene56725:CDS 45.0%
GGAAGCAAGGAAAAAGGTAG+AGG - chr6.2:5138931-5138950 MS.gene56725:CDS 45.0%
GTTGGAAAAGCTTGGAAACG+TGG - chr6.2:5138242-5138261 MS.gene56725:CDS 45.0%
TCTTATAAGGAGGGGCAGAA+TGG - chr6.2:5138667-5138686 MS.gene56725:CDS 45.0%
TGAGGAGGAAGCAAGGAAAA+AGG - chr6.2:5138925-5138944 MS.gene56725:CDS 45.0%
! AACCCCACTTGTTCTAAGCA+TGG - chr6.2:5137818-5137837 MS.gene56725:CDS 45.0%
AGGTAGAGGATGAGGAAGCT+CGG - chr6.2:5138945-5138964 MS.gene56725:CDS 50.0%
CAACTAGGTTCAATCACGGC+TGG - chr6.2:5137555-5137574 MS.gene56725:CDS 50.0%
CTTTATGGTCCACCAGGAAC+TGG - chr6.2:5138272-5138291 MS.gene56725:CDS 50.0%
GCTAGGGTTCCAAATCTTGC+AGG + chr6.2:5138146-5138165 None:intergenic 50.0%
GGGGAACTATGGTCACAACT+AGG - chr6.2:5137540-5137559 MS.gene56725:CDS 50.0%
GTAGACTTTCCAGTTCCTGG+TGG + chr6.2:5138284-5138303 None:intergenic 50.0%
CTGCCCCTCCTTATAAGAGC+AGG + chr6.2:5138665-5138684 None:intergenic 55.0%
GGTCAGCTTGTGGATCAGAG+AGG - chr6.2:5138600-5138619 MS.gene56725:CDS 55.0%
CTCTCGATCTCACCGGGCAA+AGG - chr6.2:5138447-5138466 MS.gene56725:CDS 60.0%
GGATGAGGAAGCTCGGCTCA+AGG - chr6.2:5138952-5138971 MS.gene56725:CDS 60.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 5137525 5139057 5137525 ID=MS.gene56725
chr6.2 mRNA 5137525 5139057 5137525 ID=MS.gene56725.t1;Parent=MS.gene56725
chr6.2 exon 5137525 5139057 5137525 ID=MS.gene56725.t1.exon1;Parent=MS.gene56725.t1
chr6.2 CDS 5137525 5139057 5137525 ID=cds.MS.gene56725.t1;Parent=MS.gene56725.t1
Gene Sequence

>MS.gene56725

ATGAAGATGGGAATTGGGGAACTATGGTCACAACTAGGTTCAATCACGGCTGGCATAATGTTTGTGTATGCCATGTTTGACAAATTTTTCCCACCTTATCTTCGTGCATGTTTTCTAAAATACACAAACAAATTCACAAACTTTATGTATCCATACATCAACATAAAGTTTCATGAGTTATCAGGTGAACGTCTCAAACAAAGTGAAACTTACAAAATCATCCAAACATATCTTAGTGCAAACTCATCACAAAGAGCAAGAAGACTTAAAGCTGAAGTTGTGAAAGATAGTCAAACCCCACTTGTTCTAAGCATGGATGATAATGAAGAAATCATAGATGAGTTCAATGGAGTCAAAGTTTGGTGGACTGCTAATTACACCACCTCAAAATCACAATCATTTTCTTACTATCCTACTTCAGATGAAAAAAGATTCTTAACCCTAACTTTCCACAAAAAGCATCGTGAACTCATCACTACCTCTTACATTCAACATGTGTTGGATGAAGGGAAAGCTATTATGAGCAAGAATAGGCAGTTAAAGCTTTACACCAACAACCCTAGTAGTAATTGGTGGATGTATAAAAGCACAAAGTGGAGTCACACTACTTTTGAGCATCCTGCAAGATTTGGAACCCTAGCTATGGAACCAGAAAAGAAAGAAGAGATTCTAAATGATCTTCTTAAGTTCAAGAAAGGTAAAGAGTATTATGCTAAAGTTGGAAAAGCTTGGAAACGTGGTTATCTACTTTATGGTCCACCAGGAACTGGAAAGTCTACCATGATATCAGCTATAGCAAATTTCATGAACTATGATGTGTATGATCTTGAGTTAACAACTGTTAAGGATAACAATGAGTTGAAGAGACTCTTGATTGAGACGTCGAGTAAATCGATAATAGTTATCGAAGATATTGATTGTTCTCTCGATCTCACCGGGCAAAGGAAGAAGAAAGAAGAGAAAGATGATGATGAGAATGATGAAAAGAAGGATCCTATTAAGAAAGCTGAAAAAGAAGAGAAAAATGAAAGTAAGGTAACTCTTTCTGGTTTGCTGAATTTTATTGATGGAATTTGGTCAGCTTGTGGATCAGAGAGGATCATAATTTTCACAACAAATTTTGTGGATAAACTTGATCCTGCTCTTATAAGGAGGGGCAGAATGGATAAGCATATAGAAATGGGTTATTGTAGCTATCAAGCTTTCAAGGTTCTTGCAAGAAACTACTTAGATGTTGAGTCTCATGAAGATTTGTTTCCAATTATTGAAAAGTTGTTGGGAGAGACTAATATGACACCTGCTGATGTTGCTGAGAATTTGATGCCAAAGTCAATCACTGAAGATTTTGAAAGTTGCTTGAAGAATTTGATTCAATCTCTTGAGATTGCAAAGAAAAAGGATGAGGAGGAAGCAAGGAAAAAGGTAGAGGATGAGGAAGCTCGGCTCAAGGCAGAGAAAGAGAAAGAGAAACAAAAATTGACTCAAGAGGAAGAAAAGGTTAAGGTTGAGAAAGACAATGGTGTCATCCATTAA
Protein sequence

>MS.gene56725.t1

MKMGIGELWSQLGSITAGIMFVYAMFDKFFPPYLRACFLKYTNKFTNFMYPYINIKFHELSGERLKQSETYKIIQTYLSANSSQRARRLKAEVVKDSQTPLVLSMDDNEEIIDEFNGVKVWWTANYTTSKSQSFSYYPTSDEKRFLTLTFHKKHRELITTSYIQHVLDEGKAIMSKNRQLKLYTNNPSSNWWMYKSTKWSHTTFEHPARFGTLAMEPEKKEEILNDLLKFKKGKEYYAKVGKAWKRGYLLYGPPGTGKSTMISAIANFMNYDVYDLELTTVKDNNELKRLLIETSSKSIIVIEDIDCSLDLTGQRKKKEEKDDDENDEKKDPIKKAEKEEKNESKVTLSGLLNFIDGIWSACGSERIIIFTTNFVDKLDPALIRRGRMDKHIEMGYCSYQAFKVLARNYLDVESHEDLFPIIEKLLGETNMTPADVAENLMPKSITEDFESCLKNLIQSLEIAKKKDEEEARKKVEDEEARLKAEKEKEKQKLTQEEEKVKVEKDNGVIH