Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050336.t1 | XP_003625790.1 | 86.2 | 348 | 25 | 2 | 1 | 325 | 1 | 348 | 3.80E-154 | 554.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050336.t1 | Q7TML3 | 35.7 | 272 | 168 | 2 | 26 | 290 | 69 | 340 | 8.0e-44 | 179.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050336.t1 | G7L611 | 86.2 | 348 | 25 | 2 | 1 | 325 | 1 | 348 | 2.7e-154 | 554.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050336 | MS.gene20359 | 0.809854 | 1.54E-50 | -1.69E-46 |
| MS.gene050336 | MS.gene22587 | 0.815082 | 1.11E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050336.t1 | MTR_7g104290 | 86.207 | 348 | 25 | 2 | 1 | 325 | 1 | 348 | 0.0 | 558 |
| MS.gene050336.t1 | MTR_7g104300 | 84.241 | 349 | 31 | 2 | 1 | 325 | 1 | 349 | 0.0 | 546 |
| MS.gene050336.t1 | MTR_7g006080 | 50.000 | 284 | 140 | 1 | 25 | 306 | 41 | 324 | 1.92e-99 | 296 |
| MS.gene050336.t1 | MTR_7g006100 | 45.528 | 123 | 59 | 3 | 16 | 137 | 237 | 352 | 1.75e-23 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050336.t1 | AT3G59310 | 47.260 | 292 | 154 | 0 | 25 | 316 | 41 | 332 | 4.47e-95 | 285 |
| MS.gene050336.t1 | AT3G59340 | 50.579 | 259 | 128 | 0 | 25 | 283 | 71 | 329 | 5.13e-94 | 283 |
| MS.gene050336.t1 | AT3G59340 | 50.579 | 259 | 128 | 0 | 25 | 283 | 71 | 329 | 5.13e-94 | 283 |
| MS.gene050336.t1 | AT3G59340 | 50.579 | 259 | 128 | 0 | 25 | 283 | 71 | 329 | 5.13e-94 | 283 |
| MS.gene050336.t1 | AT3G59340 | 50.579 | 259 | 128 | 0 | 25 | 283 | 44 | 302 | 5.63e-94 | 282 |
| MS.gene050336.t1 | AT3G59310 | 42.724 | 323 | 154 | 1 | 25 | 316 | 41 | 363 | 1.54e-88 | 270 |
| MS.gene050336.t1 | AT3G59310 | 44.178 | 292 | 145 | 1 | 25 | 316 | 41 | 314 | 1.38e-84 | 258 |
| MS.gene050336.t1 | AT3G59320 | 45.118 | 297 | 151 | 2 | 25 | 321 | 42 | 326 | 4.56e-81 | 249 |
| MS.gene050336.t1 | AT3G59320 | 44.726 | 237 | 119 | 2 | 85 | 321 | 1 | 225 | 1.72e-59 | 191 |
| MS.gene050336.t1 | AT3G59330 | 46.591 | 176 | 92 | 1 | 22 | 197 | 65 | 238 | 6.37e-54 | 177 |
| MS.gene050336.t1 | AT3G59330 | 45.989 | 187 | 97 | 2 | 22 | 206 | 65 | 249 | 7.04e-53 | 174 |
| MS.gene050336.t1 | AT3G59330 | 44.318 | 176 | 87 | 1 | 22 | 197 | 65 | 229 | 3.42e-49 | 165 |
Find 61 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTTTCACCATTAAGTATT+TGG | 0.123877 | 7.2:-8457241 | None:intergenic |
| GTTACCATGCTTGGTGTTTA+TGG | 0.168778 | 7.2:+8455831 | MS.gene050336:CDS |
| GGATCTTTAGCTTTGGTTTA+TGG | 0.181379 | 7.2:+8454484 | MS.gene050336:CDS |
| ATGGAAGCATATTGCTTTAT+AGG | 0.199540 | 7.2:+8454503 | MS.gene050336:CDS |
| TGATGCTCAGGGGTGTTATT+TGG | 0.210435 | 7.2:+8455202 | MS.gene050336:CDS |
| TCCTTACTGTGCAGGTTTCT+TGG | 0.236108 | 7.2:+8455153 | MS.gene050336:intron |
| ACAGAATACCAAATACTTAA+TGG | 0.248335 | 7.2:+8457233 | MS.gene050336:CDS |
| GTAAACAGGCTCTGAGTTAA+AGG | 0.282327 | 7.2:-8454457 | None:intergenic |
| GACTCTTGGGTTGGTGGTGG+TGG | 0.297507 | 7.2:+8455493 | MS.gene050336:CDS |
| TGGTATTGGTATTTGTTACT+AGG | 0.299647 | 7.2:+8455173 | MS.gene050336:CDS |
| ACCAATGGCCACAACTAAAA+AGG | 0.300199 | 7.2:-8456969 | None:intergenic |
| TAGTCCTACTTTCTGACTCT+TGG | 0.300530 | 7.2:+8455479 | MS.gene050336:CDS |
| CTGTGCAGGTTTCTTGGTAT+TGG | 0.310471 | 7.2:+8455159 | MS.gene050336:intron |
| AGTTACTAGTGTAACATTAC+TGG | 0.316958 | 7.2:+8455348 | MS.gene050336:CDS |
| GGTGATGTACTTGTTATTGT+AGG | 0.337651 | 7.2:+8455624 | MS.gene050336:CDS |
| AGTCCTACTTTCTGACTCTT+GGG | 0.351348 | 7.2:+8455480 | MS.gene050336:CDS |
| GATGCTCAGGGGTGTTATTT+GGG | 0.354614 | 7.2:+8455203 | MS.gene050336:CDS |
| TACATATGGATCTTTAGCTT+TGG | 0.359135 | 7.2:+8454477 | MS.gene050336:CDS |
| ACTCAGAGCCTGTTTACATA+TGG | 0.370603 | 7.2:+8454463 | MS.gene050336:CDS |
| GTCCTTGGCATACTACTTCT+AGG | 0.373916 | 7.2:+8454285 | MS.gene050336:CDS |
| CTAAAGATCCATATGTAAAC+AGG | 0.391425 | 7.2:-8454471 | None:intergenic |
| TCTTGGGTTGGTGGTGGTGG+AGG | 0.406577 | 7.2:+8455496 | MS.gene050336:CDS |
| CTCTTCTAACATCTGATATG+TGG | 0.409908 | 7.2:+8456772 | MS.gene050336:CDS |
| CTTTCTGACTCTTGGGTTGG+TGG | 0.413315 | 7.2:+8455487 | MS.gene050336:CDS |
| AAACTGACCTTTAGAACAAA+AGG | 0.439301 | 7.2:-8456278 | None:intergenic |
| CTACTTTCTGACTCTTGGGT+TGG | 0.442810 | 7.2:+8455484 | MS.gene050336:CDS |
| TGTTAATATTTCAGGTGGAT+TGG | 0.451259 | 7.2:+8456933 | MS.gene050336:intron |
| AGATATTCCCTATGGCAGTT+AGG | 0.452883 | 7.2:+8455424 | MS.gene050336:CDS |
| AGACTCTGAAATCAATCAAA+TGG | 0.464098 | 7.2:+8456067 | MS.gene050336:CDS |
| GTGATGTACTTGTTATTGTA+GGG | 0.464171 | 7.2:+8455625 | MS.gene050336:CDS |
| TCTGACTCTTGGGTTGGTGG+TGG | 0.470842 | 7.2:+8455490 | MS.gene050336:CDS |
| CTACTCACATGGATCTTCCT+TGG | 0.475337 | 7.2:+8455397 | MS.gene050336:CDS |
| GGAGGAACACTCTGTGTACT+TGG | 0.490779 | 7.2:+8455448 | MS.gene050336:CDS |
| TGGACTGTTGGACAGTACCT+TGG | 0.500284 | 7.2:+8455368 | MS.gene050336:CDS |
| CGCAATAAGCAATGTTGTTG+AGG | 0.508494 | 7.2:+8455659 | MS.gene050336:CDS |
| GGACTGTTGGACAGTACCTT+GGG | 0.513919 | 7.2:+8455369 | MS.gene050336:CDS |
| ACTGCAACTTTAGAAGTCCT+TGG | 0.518139 | 7.2:+8454270 | MS.gene050336:CDS |
| TTCCTCCACCTAACTGCCAT+AGG | 0.526077 | 7.2:-8455432 | None:intergenic |
| CTTGGGTAATTCTACTCACA+TGG | 0.528315 | 7.2:+8455386 | MS.gene050336:CDS |
| TCCTCAGTAGTAGCTGATGC+AGG | 0.537140 | 7.2:-8457197 | None:intergenic |
| TTGGCACAAGATATTCCCTA+TGG | 0.540600 | 7.2:+8455416 | MS.gene050336:CDS |
| TCTTCTAACATCTGATATGT+GGG | 0.540743 | 7.2:+8456773 | MS.gene050336:CDS |
| AATGATTCTTTAGCTTCATG+AGG | 0.544124 | 7.2:+8457284 | MS.gene050336:CDS |
| GTGTAACATTACTGGACTGT+TGG | 0.549286 | 7.2:+8455356 | MS.gene050336:CDS |
| GTTGAAGCAGTTACCATGCT+TGG | 0.558634 | 7.2:+8455822 | MS.gene050336:CDS |
| GCTGCTCCACCAAGTTCTCA+TGG | 0.572008 | 7.2:-8454247 | None:intergenic |
| ACACTTCAATAGCAGTAACT+AGG | 0.574085 | 7.2:-8455857 | None:intergenic |
| ATGATTCTTTAGCTTCATGA+GGG | 0.580070 | 7.2:+8457285 | MS.gene050336:CDS |
| TCCCTATGGCAGTTAGGTGG+AGG | 0.580943 | 7.2:+8455430 | MS.gene050336:CDS |
| ATTGGACTACCATGAGAACT+TGG | 0.582975 | 7.2:+8454238 | MS.gene050336:CDS |
| GGACTACCATGAGAACTTGG+TGG | 0.595201 | 7.2:+8454241 | MS.gene050336:CDS |
| TCCTCCACCTAACTGCCATA+GGG | 0.599929 | 7.2:-8455431 | None:intergenic |
| AGAATAAATGATGAGACCAA+TGG | 0.602099 | 7.2:-8456984 | None:intergenic |
| TATTCCCTATGGCAGTTAGG+TGG | 0.603065 | 7.2:+8455427 | MS.gene050336:CDS |
| GAATCCATAAACACCAAGCA+TGG | 0.605054 | 7.2:-8455835 | None:intergenic |
| AACATCTGATATGTGGGCAG+TGG | 0.609241 | 7.2:+8456779 | MS.gene050336:CDS |
| GACCTAGAAGTAGTATGCCA+AGG | 0.619123 | 7.2:-8454287 | None:intergenic |
| CAACCCAAGAGTCAGAAAGT+AGG | 0.624613 | 7.2:-8455483 | None:intergenic |
| TCCTGCATCAGCTACTACTG+AGG | 0.630475 | 7.2:+8457196 | MS.gene050336:CDS |
| ATAGGGAATATCTTGTGCCA+AGG | 0.633044 | 7.2:-8455414 | None:intergenic |
| CATGTGAGTAGAATTACCCA+AGG | 0.694773 | 7.2:-8455385 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAATTTTATATTTTTTA+CGG | - | chr7.2:8454869-8454888 | None:intergenic | 0.0% |
| !! | AATTATAGTTACAATTATAA+AGG | - | chr7.2:8457107-8457126 | None:intergenic | 10.0% |
| !! | TAAATTAGAATAATAGTATT+TGG | - | chr7.2:8455975-8455994 | None:intergenic | 10.0% |
| !! | TGATTATTAATGATATATAT+AGG | + | chr7.2:8454424-8454443 | MS.gene050336:intron | 10.0% |
| !!! | ATAAAATTTTGAATCTAAAA+AGG | - | chr7.2:8455540-8455559 | None:intergenic | 10.0% |
| !!! | ATTATTAGAGTTTTTTTTTA+GGG | + | chr7.2:8454607-8454626 | MS.gene050336:intron | 10.0% |
| !!! | TATAATATTTTGAATTTTTC+TGG | + | chr7.2:8454940-8454959 | MS.gene050336:intron | 10.0% |
| !!! | TGTATTTAATTTCTAATTTA+TGG | + | chr7.2:8456137-8456156 | MS.gene050336:intron | 10.0% |
| !! | AATGCTTGATATAAAAAAAA+GGG | - | chr7.2:8455126-8455145 | None:intergenic | 15.0% |
| !!! | AAATTTAAATCATTTAGCTT+TGG | + | chr7.2:8456367-8456386 | MS.gene050336:intron | 15.0% |
| !!! | AAATTTTCAATCTTCATTTT+TGG | - | chr7.2:8455020-8455039 | None:intergenic | 15.0% |
| !!! | AGTCAGAAAAAATATTTTAT+AGG | + | chr7.2:8456666-8456685 | MS.gene050336:intron | 15.0% |
| !!! | ATGAAGATTGAAAATTTTAT+AGG | + | chr7.2:8455023-8455042 | MS.gene050336:intron | 15.0% |
| !!! | CATTATTAGAGTTTTTTTTT+AGG | + | chr7.2:8454606-8454625 | MS.gene050336:intron | 15.0% |
| !!! | GTCAGAAAAAATATTTTATA+GGG | + | chr7.2:8456667-8456686 | MS.gene050336:intron | 15.0% |
| !!! | TAGTGATTGAAAATTTTATA+GGG | - | chr7.2:8454710-8454729 | None:intergenic | 15.0% |
| !!! | TGAAGATTGAAAATTTTATA+GGG | + | chr7.2:8455024-8455043 | MS.gene050336:intron | 15.0% |
| !!! | TTATAGCTTTTATAAAATCA+TGG | + | chr7.2:8456576-8456595 | MS.gene050336:intron | 15.0% |
| !!! | TTCTGTTTTATAATATTGAT+TGG | + | chr7.2:8456003-8456022 | MS.gene050336:intron | 15.0% |
| !! | AAAAAAACTAGAATATACTG+TGG | + | chr7.2:8455253-8455272 | MS.gene050336:intron | 20.0% |
| !! | AAAATCATGTTACTAACTAT+TGG | + | chr7.2:8457143-8457162 | MS.gene050336:intron | 20.0% |
| !! | AACCAAACTAGAATAATATT+TGG | - | chr7.2:8455922-8455941 | None:intergenic | 20.0% |
| !! | AAGTAACAAAAACATTAAGA+AGG | - | chr7.2:8455885-8455904 | None:intergenic | 20.0% |
| !! | ACTAGAATAATATTTGGTAT+TGG | - | chr7.2:8455916-8455935 | None:intergenic | 20.0% |
| !! | CAATGCTTGATATAAAAAAA+AGG | - | chr7.2:8455127-8455146 | None:intergenic | 20.0% |
| !! | GAAAAGTTGACATATTTATA+GGG | + | chr7.2:8455084-8455103 | MS.gene050336:intron | 20.0% |
| !! | GAAAAGTTGACATATTTATA+GGG | - | chr7.2:8455103-8455084 | None:intergenic | 20.0% |
| !! | TTCAATTATGAAATGTTACT+TGG | + | chr7.2:8455943-8455962 | MS.gene050336:intron | 20.0% |
| !!! | AAATTTTCAATCACTACTTT+TGG | + | chr7.2:8454714-8454733 | MS.gene050336:intron | 20.0% |
| !!! | ACTTGATAGATGATATTTTA+CGG | - | chr7.2:8456453-8456472 | None:intergenic | 20.0% |
| !!! | ATATGAGTTTACTTTAAAAG+AGG | + | chr7.2:8454992-8455011 | MS.gene050336:intron | 20.0% |
| !!! | GTAGTGATTGAAAATTTTAT+AGG | - | chr7.2:8454711-8454730 | None:intergenic | 20.0% |
| !!! | GTATGTTTGTTTTTTACATT+TGG | + | chr7.2:8457012-8457031 | MS.gene050336:intron | 20.0% |
| !!! | GTCAGTTTTAATATCATTTT+AGG | + | chr7.2:8456109-8456128 | MS.gene050336:intron | 20.0% |
| !!! | TACCAAATATTATTCTAGTT+TGG | + | chr7.2:8455917-8455936 | MS.gene050336:intron | 20.0% |
| !!! | TATGAGTTTACTTTAAAAGA+GGG | + | chr7.2:8454993-8455012 | MS.gene050336:intron | 20.0% |
| !!! | TTACTTTGTTATTTTTTTCC+TGG | + | chr7.2:8454380-8454399 | MS.gene050336:intron | 20.0% |
| !!! | TTCTTAATGTTTTTGTTACT+TGG | + | chr7.2:8455884-8455903 | MS.gene050336:intron | 20.0% |
| !!! | TTTAAATTTTACGAGAAGAT+TGG | - | chr7.2:8456356-8456375 | None:intergenic | 20.0% |
| !!! | TTTAGGGTTAAATATGTTTT+TGG | + | chr7.2:8454623-8454642 | MS.gene050336:intron | 20.0% |
| !!! | TTTTTTTCCTGGATTTTAAA+CGG | + | chr7.2:8454391-8454410 | MS.gene050336:intron | 20.0% |
| ! | ACAGAATACCAAATACTTAA+TGG | + | chr7.2:8457233-8457252 | MS.gene050336:CDS | 25.0% |
| ! | AGATATCTAAATTCCTTAAC+AGG | + | chr7.2:8456202-8456221 | MS.gene050336:intron | 25.0% |
| ! | AGTAAAAATACCAACCAAAT+TGG | - | chr7.2:8454365-8454384 | None:intergenic | 25.0% |
| ! | ATCTTATTCTGCAACATAAA+TGG | - | chr7.2:8455739-8455758 | None:intergenic | 25.0% |
| ! | CGAAAAGTTGACATATTTAT+AGG | + | chr7.2:8455083-8455102 | MS.gene050336:intron | 25.0% |
| ! | CGAAAAGTTGACATATTTAT+AGG | - | chr7.2:8455102-8455083 | None:intergenic | 25.0% |
| ! | GTAAAAATACCAACCAAATT+GGG | - | chr7.2:8454364-8454383 | None:intergenic | 25.0% |
| ! | TATATGCATATACATACAAG+AGG | - | chr7.2:8454538-8454557 | None:intergenic | 25.0% |
| ! | TCATTAATAATCAATCCATG+TGG | - | chr7.2:8454417-8454436 | None:intergenic | 25.0% |
| ! | TTAGTCATTGGATGTATATT+TGG | + | chr7.2:8456502-8456521 | MS.gene050336:intron | 25.0% |
| ! | TTATAGGGATTAAAAGTTGA+AGG | + | chr7.2:8455039-8455058 | MS.gene050336:intron | 25.0% |
| ! | TTTGTCTGATATTTAGTCAT+TGG | + | chr7.2:8456490-8456509 | MS.gene050336:intron | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | + | chr7.2:8455052-8455071 | MS.gene050336:intron | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | - | chr7.2:8455071-8455052 | None:intergenic | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | + | chr7.2:8455053-8455072 | MS.gene050336:intron | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | - | chr7.2:8455072-8455053 | None:intergenic | 25.0% |
| !! | ATTTTGTAAGATGGAAAAAC+AGG | - | chr7.2:8455771-8455790 | None:intergenic | 25.0% |
| !! | CTTGATAGATGATATTTTAC+GGG | - | chr7.2:8456452-8456471 | None:intergenic | 25.0% |
| !! | CTTTATAACAGTGAAGTATT+TGG | + | chr7.2:8457061-8457080 | MS.gene050336:intron | 25.0% |
| !! | TAGCTTTTATAAAATCATGG+TGG | + | chr7.2:8456579-8456598 | MS.gene050336:intron | 25.0% |
| !! | TCACAAAGTGTTAATATTTC+AGG | + | chr7.2:8456925-8456944 | MS.gene050336:intron | 25.0% |
| !! | TTGATAGATGATATTTTACG+GGG | - | chr7.2:8456451-8456470 | None:intergenic | 25.0% |
| AGAACAGATCTATGAGATAT+TGG | - | chr7.2:8456039-8456058 | None:intergenic | 30.0% | |
| AGAATAAATGATGAGACCAA+TGG | - | chr7.2:8456987-8457006 | None:intergenic | 30.0% | |
| AGTTACTAGTGTAACATTAC+TGG | + | chr7.2:8455348-8455367 | MS.gene050336:CDS | 30.0% | |
| AGTTTAAATGATGAGACCAA+TGG | - | chr7.2:8457038-8457057 | None:intergenic | 30.0% | |
| ATACCAAAGATGCACTAAAA+TGG | + | chr7.2:8456631-8456650 | MS.gene050336:intron | 30.0% | |
| CACTTTCACCATTAAGTATT+TGG | - | chr7.2:8457244-8457263 | None:intergenic | 30.0% | |
| CTAAAGATCCATATGTAAAC+AGG | - | chr7.2:8454474-8454493 | None:intergenic | 30.0% | |
| TAAAGGCCACTATAATCAAA+AGG | - | chr7.2:8457090-8457109 | None:intergenic | 30.0% | |
| TACCAAAGATGCACTAAAAT+GGG | + | chr7.2:8456632-8456651 | MS.gene050336:intron | 30.0% | |
| TATCGGAAATTAATACCTTC+TGG | - | chr7.2:8456827-8456846 | None:intergenic | 30.0% | |
| TCTATGAGATATTGGAGTAA+AGG | - | chr7.2:8456031-8456050 | None:intergenic | 30.0% | |
| TCTTCTAACATCTGATATGT+GGG | + | chr7.2:8456773-8456792 | MS.gene050336:CDS | 30.0% | |
| TGTCACATGCAAATGAATAT+CGG | - | chr7.2:8456844-8456863 | None:intergenic | 30.0% | |
| TTATAGGGACTAAAAGTTGA+AGG | - | chr7.2:8454695-8454714 | None:intergenic | 30.0% | |
| ! | AATTCCTGCATTTTGTAAGA+TGG | - | chr7.2:8455780-8455799 | None:intergenic | 30.0% |
| ! | AGTTTTCATTTATCACCAGA+AGG | + | chr7.2:8456809-8456828 | MS.gene050336:CDS | 30.0% |
| ! | ATGGAAGCATATTGCTTTAT+AGG | + | chr7.2:8454503-8454522 | MS.gene050336:CDS | 30.0% |
| ! | CAAAGTGTTAATATTTCAGG+TGG | + | chr7.2:8456928-8456947 | MS.gene050336:intron | 30.0% |
| ! | TACATATGGATCTTTAGCTT+TGG | + | chr7.2:8454477-8454496 | MS.gene050336:CDS | 30.0% |
| ! | TAGATTTGTTTGTGTCAATG+TGG | + | chr7.2:8456308-8456327 | MS.gene050336:intron | 30.0% |
| ! | TGTTAATATTTCAGGTGGAT+TGG | + | chr7.2:8456933-8456952 | MS.gene050336:intron | 30.0% |
| ! | TTGTCCTGATTACAATTTTC+AGG | + | chr7.2:8455582-8455601 | MS.gene050336:intron | 30.0% |
| ! | TTTGATTTAGCATTATGCTC+TGG | + | chr7.2:8455288-8455307 | MS.gene050336:intron | 30.0% |
| ! | TTTTCCATCTTACAAAATGC+AGG | + | chr7.2:8455773-8455792 | MS.gene050336:intron | 30.0% |
| !! | AAACTGACCTTTAGAACAAA+AGG | - | chr7.2:8456281-8456300 | None:intergenic | 30.0% |
| !! | AGACTCTGAAATCAATCAAA+TGG | + | chr7.2:8456067-8456086 | MS.gene050336:CDS | 30.0% |
| !! | GTGATGTACTTGTTATTGTA+GGG | + | chr7.2:8455625-8455644 | MS.gene050336:CDS | 30.0% |
| !! | TGGTAAGTTTGTTGAAGTTA+CGG | + | chr7.2:8456530-8456549 | MS.gene050336:intron | 30.0% |
| !! | TGGTATTGGTATTTGTTACT+AGG | + | chr7.2:8455173-8455192 | MS.gene050336:CDS | 30.0% |
| !! | TGGTTTCCTTTTGATTATAG+TGG | + | chr7.2:8457081-8457100 | MS.gene050336:intron | 30.0% |
| !!! | CGTAGTTTTAAATAGTGTGA+TGG | + | chr7.2:8456704-8456723 | MS.gene050336:intron | 30.0% |
| !!! | TGTTTTTTACATTTGGCCAT+TGG | + | chr7.2:8457019-8457038 | MS.gene050336:intron | 30.0% |
| ACACTTCAATAGCAGTAACT+AGG | - | chr7.2:8455860-8455879 | None:intergenic | 35.0% | |
| ATGGTGGTTCGATGTAATTT+CGG | + | chr7.2:8456595-8456614 | MS.gene050336:intron | 35.0% | |
| CTCTTCTAACATCTGATATG+TGG | + | chr7.2:8456772-8456791 | MS.gene050336:CDS | 35.0% | |
| GGTGGATCAAAAACTATCTT+CGG | + | chr7.2:8455603-8455622 | MS.gene050336:intron | 35.0% | |
| TCCACCTGAAAATTGTAATC+AGG | - | chr7.2:8455589-8455608 | None:intergenic | 35.0% | |
| ! | ACTTGCTCCTTTTGTTCTAA+AGG | + | chr7.2:8456271-8456290 | MS.gene050336:CDS | 35.0% |
| !! | GGATCTTTAGCTTTGGTTTA+TGG | + | chr7.2:8454484-8454503 | MS.gene050336:CDS | 35.0% |
| !! | GGTGATGTACTTGTTATTGT+AGG | + | chr7.2:8455624-8455643 | MS.gene050336:CDS | 35.0% |
| !! | TCCTGATTACAATTTTCAGG+TGG | + | chr7.2:8455585-8455604 | MS.gene050336:intron | 35.0% |
| !!! | CTTCGTTTCCTTTTTAGTTG+TGG | + | chr7.2:8456961-8456980 | MS.gene050336:CDS | 35.0% |
| ACCAATGGCCACAACTAAAA+AGG | - | chr7.2:8456972-8456991 | None:intergenic | 40.0% | |
| ACTCAGAGCCTGTTTACATA+TGG | + | chr7.2:8454463-8454482 | MS.gene050336:CDS | 40.0% | |
| AGATATTCCCTATGGCAGTT+AGG | + | chr7.2:8455424-8455443 | MS.gene050336:CDS | 40.0% | |
| AGTCCTACTTTCTGACTCTT+GGG | + | chr7.2:8455480-8455499 | MS.gene050336:CDS | 40.0% | |
| ATAGGGAATATCTTGTGCCA+AGG | - | chr7.2:8455417-8455436 | None:intergenic | 40.0% | |
| ATTGGACTACCATGAGAACT+TGG | + | chr7.2:8454238-8454257 | MS.gene050336:CDS | 40.0% | |
| CATGTGAGTAGAATTACCCA+AGG | - | chr7.2:8455388-8455407 | None:intergenic | 40.0% | |
| CGCAATAAGCAATGTTGTTG+AGG | + | chr7.2:8455659-8455678 | MS.gene050336:CDS | 40.0% | |
| CTTGGGTAATTCTACTCACA+TGG | + | chr7.2:8455386-8455405 | MS.gene050336:CDS | 40.0% | |
| GAATCCATAAACACCAAGCA+TGG | - | chr7.2:8455838-8455857 | None:intergenic | 40.0% | |
| GCAAAAGCAAGTACCTGTTA+AGG | - | chr7.2:8456218-8456237 | None:intergenic | 40.0% | |
| GTGTAACATTACTGGACTGT+TGG | + | chr7.2:8455356-8455375 | MS.gene050336:CDS | 40.0% | |
| TAGTCCTACTTTCTGACTCT+TGG | + | chr7.2:8455479-8455498 | MS.gene050336:CDS | 40.0% | |
| TCTTCTCTCATAGCCCAATT+TGG | + | chr7.2:8454348-8454367 | MS.gene050336:intron | 40.0% | |
| TGGTCTGCAGATATTGTAAG+TGG | + | chr7.2:8456087-8456106 | MS.gene050336:intron | 40.0% | |
| TTGGCACAAGATATTCCCTA+TGG | + | chr7.2:8455416-8455435 | MS.gene050336:CDS | 40.0% | |
| ! | ACTGCAACTTTAGAAGTCCT+TGG | + | chr7.2:8454270-8454289 | MS.gene050336:CDS | 40.0% |
| ! | TTTTGTCTCATGCAGTTGAG+CGG | + | chr7.2:8456729-8456748 | MS.gene050336:intron | 40.0% |
| !! | GTAAACAGGCTCTGAGTTAA+AGG | - | chr7.2:8454460-8454479 | None:intergenic | 40.0% |
| !! | GTTACCATGCTTGGTGTTTA+TGG | + | chr7.2:8455831-8455850 | MS.gene050336:CDS | 40.0% |
| !! | TAACAGGTACTTGCTTTTGC+TGG | + | chr7.2:8456218-8456237 | MS.gene050336:intron | 40.0% |
| !! | TGCCCATTTTAGTGCATCTT+TGG | - | chr7.2:8456637-8456656 | None:intergenic | 40.0% |
| !! | TGGATGTATATTTGGTGTCG+TGG | + | chr7.2:8456510-8456529 | MS.gene050336:intron | 40.0% |
| !!! | TCCTTTTTAGTTGTGGCCAT+TGG | + | chr7.2:8456968-8456987 | MS.gene050336:CDS | 40.0% |
| AACATCTGATATGTGGGCAG+TGG | + | chr7.2:8456779-8456798 | MS.gene050336:CDS | 45.0% | |
| ACCAAGAAACCTGCACAGTA+AGG | - | chr7.2:8455157-8455176 | None:intergenic | 45.0% | |
| CAACCCAAGAGTCAGAAAGT+AGG | - | chr7.2:8455486-8455505 | None:intergenic | 45.0% | |
| CTACTCACATGGATCTTCCT+TGG | + | chr7.2:8455397-8455416 | MS.gene050336:CDS | 45.0% | |
| CTACTTTCTGACTCTTGGGT+TGG | + | chr7.2:8455484-8455503 | MS.gene050336:CDS | 45.0% | |
| CTCTCATAGCCCAATTTGGT+TGG | + | chr7.2:8454352-8454371 | MS.gene050336:intron | 45.0% | |
| CTGTGCAGGTTTCTTGGTAT+TGG | + | chr7.2:8455159-8455178 | MS.gene050336:intron | 45.0% | |
| GACCTAGAAGTAGTATGCCA+AGG | - | chr7.2:8454290-8454309 | None:intergenic | 45.0% | |
| GTCCTTGGCATACTACTTCT+AGG | + | chr7.2:8454285-8454304 | MS.gene050336:CDS | 45.0% | |
| GTTGAAGCAGTTACCATGCT+TGG | + | chr7.2:8455822-8455841 | MS.gene050336:CDS | 45.0% | |
| TATTCCCTATGGCAGTTAGG+TGG | + | chr7.2:8455427-8455446 | MS.gene050336:CDS | 45.0% | |
| TCCTTACTGTGCAGGTTTCT+TGG | + | chr7.2:8455153-8455172 | MS.gene050336:intron | 45.0% | |
| ! | ACTAGGTTTTGCTGATGCTC+AGG | + | chr7.2:8455190-8455209 | MS.gene050336:CDS | 45.0% |
| ! | CATGTGGCCGTTTAAAATCC+AGG | - | chr7.2:8454401-8454420 | None:intergenic | 45.0% |
| ! | CTAGGTTTTGCTGATGCTCA+GGG | + | chr7.2:8455191-8455210 | MS.gene050336:CDS | 45.0% |
| ! | CTGGATTTTAAACGGCCACA+TGG | + | chr7.2:8454399-8454418 | MS.gene050336:intron | 45.0% |
| ! | TAGGTTTTGCTGATGCTCAG+GGG | + | chr7.2:8455192-8455211 | MS.gene050336:CDS | 45.0% |
| !! | GATGCTCAGGGGTGTTATTT+GGG | + | chr7.2:8455203-8455222 | MS.gene050336:CDS | 45.0% |
| !! | GTACTTGCTTTTGCTGGCTA+TGG | + | chr7.2:8456224-8456243 | MS.gene050336:CDS | 45.0% |
| !! | TGATGCTCAGGGGTGTTATT+TGG | + | chr7.2:8455202-8455221 | MS.gene050336:CDS | 45.0% |
| !! | ACAAAAATTAAATTAAAAAT+AGG | - | chr7.2:8454742-8454761 | None:intergenic | 5.0% |
| !! | CAAAAATTAAATTAAAAATA+GGG | - | chr7.2:8454741-8454760 | None:intergenic | 5.0% |
| !!! | AAAAAATTCTAAATTTTTTT+GGG | + | chr7.2:8454908-8454927 | MS.gene050336:intron | 5.0% |
| !!! | AAAAAATTCTAATTTTTTTT+AGG | - | chr7.2:8454815-8454834 | None:intergenic | 5.0% |
| !!! | AAATTTTATAATCAATTAAT+TGG | + | chr7.2:8455551-8455570 | MS.gene050336:intron | 5.0% |
| !!! | TAAAAAATTCTAAATTTTTT+TGG | + | chr7.2:8454907-8454926 | MS.gene050336:intron | 5.0% |
| GGACTACCATGAGAACTTGG+TGG | + | chr7.2:8454241-8454260 | MS.gene050336:CDS | 50.0% | |
| GGACTGTTGGACAGTACCTT+GGG | + | chr7.2:8455369-8455388 | MS.gene050336:CDS | 50.0% | |
| GGAGGAACACTCTGTGTACT+TGG | + | chr7.2:8455448-8455467 | MS.gene050336:CDS | 50.0% | |
| TCCTCAGTAGTAGCTGATGC+AGG | - | chr7.2:8457200-8457219 | None:intergenic | 50.0% | |
| TCCTCCACCTAACTGCCATA+GGG | - | chr7.2:8455434-8455453 | None:intergenic | 50.0% | |
| TCCTGCATCAGCTACTACTG+AGG | + | chr7.2:8457196-8457215 | MS.gene050336:CDS | 50.0% | |
| TGCATGTGTCCTTACTGTGC+AGG | + | chr7.2:8455145-8455164 | MS.gene050336:intron | 50.0% | |
| TGGACTGTTGGACAGTACCT+TGG | + | chr7.2:8455368-8455387 | MS.gene050336:CDS | 50.0% | |
| TTCCTCCACCTAACTGCCAT+AGG | - | chr7.2:8455435-8455454 | None:intergenic | 50.0% | |
| !! | CTTTCTGACTCTTGGGTTGG+TGG | + | chr7.2:8455487-8455506 | MS.gene050336:CDS | 50.0% |
| GCTGCTCCACCAAGTTCTCA+TGG | - | chr7.2:8454250-8454269 | None:intergenic | 55.0% | |
| TCCCTATGGCAGTTAGGTGG+AGG | + | chr7.2:8455430-8455449 | MS.gene050336:CDS | 55.0% | |
| !! | TCTGACTCTTGGGTTGGTGG+TGG | + | chr7.2:8455490-8455509 | MS.gene050336:CDS | 55.0% |
| !! | GACTCTTGGGTTGGTGGTGG+TGG | + | chr7.2:8455493-8455512 | MS.gene050336:CDS | 60.0% |
| !! | TCTTGGGTTGGTGGTGGTGG+AGG | + | chr7.2:8455496-8455515 | MS.gene050336:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 8454234 | 8457304 | 8454234 | ID=MS.gene050336 |
| chr7.2 | mRNA | 8454234 | 8457304 | 8454234 | ID=MS.gene050336.t1;Parent=MS.gene050336 |
| chr7.2 | exon | 8454234 | 8454306 | 8454234 | ID=MS.gene050336.t1.exon1;Parent=MS.gene050336.t1 |
| chr7.2 | CDS | 8454234 | 8454306 | 8454234 | ID=cds.MS.gene050336.t1;Parent=MS.gene050336.t1 |
| chr7.2 | exon | 8454446 | 8454540 | 8454446 | ID=MS.gene050336.t1.exon2;Parent=MS.gene050336.t1 |
| chr7.2 | CDS | 8454446 | 8454540 | 8454446 | ID=cds.MS.gene050336.t1;Parent=MS.gene050336.t1 |
| chr7.2 | exon | 8455167 | 8455224 | 8455167 | ID=MS.gene050336.t1.exon3;Parent=MS.gene050336.t1 |
| chr7.2 | CDS | 8455167 | 8455224 | 8455167 | ID=cds.MS.gene050336.t1;Parent=MS.gene050336.t1 |
| chr7.2 | exon | 8455323 | 8455517 | 8455323 | ID=MS.gene050336.t1.exon4;Parent=MS.gene050336.t1 |
| chr7.2 | CDS | 8455323 | 8455517 | 8455323 | ID=cds.MS.gene050336.t1;Parent=MS.gene050336.t1 |
| chr7.2 | exon | 8455604 | 8455680 | 8455604 | ID=MS.gene050336.t1.exon5;Parent=MS.gene050336.t1 |
| chr7.2 | CDS | 8455604 | 8455680 | 8455604 | ID=cds.MS.gene050336.t1;Parent=MS.gene050336.t1 |
| chr7.2 | exon | 8455795 | 8455877 | 8455795 | ID=MS.gene050336.t1.exon6;Parent=MS.gene050336.t1 |
| chr7.2 | CDS | 8455795 | 8455877 | 8455795 | ID=cds.MS.gene050336.t1;Parent=MS.gene050336.t1 |
| chr7.2 | exon | 8456050 | 8456101 | 8456050 | ID=MS.gene050336.t1.exon7;Parent=MS.gene050336.t1 |
| chr7.2 | CDS | 8456050 | 8456101 | 8456050 | ID=cds.MS.gene050336.t1;Parent=MS.gene050336.t1 |
| chr7.2 | exon | 8456224 | 8456292 | 8456224 | ID=MS.gene050336.t1.exon8;Parent=MS.gene050336.t1 |
| chr7.2 | CDS | 8456224 | 8456292 | 8456224 | ID=cds.MS.gene050336.t1;Parent=MS.gene050336.t1 |
| chr7.2 | exon | 8456744 | 8456830 | 8456744 | ID=MS.gene050336.t1.exon9;Parent=MS.gene050336.t1 |
| chr7.2 | CDS | 8456744 | 8456830 | 8456744 | ID=cds.MS.gene050336.t1;Parent=MS.gene050336.t1 |
| chr7.2 | exon | 8456947 | 8457011 | 8456947 | ID=MS.gene050336.t1.exon10;Parent=MS.gene050336.t1 |
| chr7.2 | CDS | 8456947 | 8457011 | 8456947 | ID=cds.MS.gene050336.t1;Parent=MS.gene050336.t1 |
| chr7.2 | exon | 8457181 | 8457304 | 8457181 | ID=MS.gene050336.t1.exon11;Parent=MS.gene050336.t1 |
| chr7.2 | CDS | 8457181 | 8457304 | 8457181 | ID=cds.MS.gene050336.t1;Parent=MS.gene050336.t1 |
| Gene Sequence |
| Protein sequence |
