Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050469.t1 | XP_013450530.1 | 97.5 | 519 | 13 | 0 | 1 | 519 | 1 | 519 | 1.90E-301 | 1044.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050469.t1 | F4IRQ5 | 57.8 | 524 | 199 | 6 | 1 | 509 | 48 | 564 | 1.1e-175 | 617.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050469.t1 | A0A072U5Y9 | 97.5 | 519 | 13 | 0 | 1 | 519 | 1 | 519 | 1.4e-301 | 1044.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050469 | MS.gene73643 | 0.806995 | 6.27E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050469.t1 | MTR_7g115250 | 97.495 | 519 | 13 | 0 | 1 | 519 | 1 | 519 | 0.0 | 1062 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050469.t1 | AT2G32320 | 57.252 | 524 | 207 | 5 | 1 | 509 | 1 | 522 | 0.0 | 632 |
| MS.gene050469.t1 | AT2G32320 | 47.212 | 269 | 135 | 3 | 258 | 520 | 1 | 268 | 2.55e-80 | 260 |
| MS.gene050469.t1 | AT2G32320 | 56.497 | 531 | 207 | 6 | 1 | 509 | 1 | 529 | 0.0 | 628 |
| MS.gene050469.t1 | AT2G32320 | 46.014 | 276 | 135 | 4 | 258 | 520 | 1 | 275 | 1.01e-77 | 254 |
| MS.gene050469.t1 | AT2G32320 | 55.970 | 536 | 207 | 6 | 1 | 509 | 1 | 534 | 0.0 | 625 |
| MS.gene050469.t1 | AT2G32320 | 44.840 | 281 | 136 | 4 | 258 | 520 | 1 | 280 | 5.19e-77 | 252 |
| MS.gene050469.t1 | AT2G31580 | 57.824 | 524 | 199 | 6 | 1 | 509 | 48 | 564 | 0.0 | 625 |
| MS.gene050469.t1 | AT2G31580 | 51.111 | 270 | 125 | 3 | 257 | 520 | 47 | 315 | 1.09e-85 | 275 |
| MS.gene050469.t1 | AT2G31580 | 57.824 | 524 | 199 | 6 | 1 | 509 | 1 | 517 | 0.0 | 624 |
| MS.gene050469.t1 | AT2G31580 | 51.301 | 269 | 124 | 3 | 258 | 520 | 1 | 268 | 5.89e-86 | 275 |
| MS.gene050469.t1 | AT2G31580 | 57.824 | 524 | 199 | 6 | 1 | 509 | 1 | 517 | 0.0 | 624 |
| MS.gene050469.t1 | AT2G31580 | 51.301 | 269 | 124 | 3 | 258 | 520 | 1 | 268 | 5.89e-86 | 275 |
| MS.gene050469.t1 | AT2G31580 | 59.330 | 418 | 160 | 3 | 1 | 409 | 48 | 464 | 0.0 | 531 |
| MS.gene050469.t1 | AT2G31580 | 51.111 | 270 | 125 | 3 | 257 | 520 | 47 | 315 | 4.69e-87 | 276 |
| MS.gene050469.t1 | AT2G31580 | 59.330 | 418 | 160 | 3 | 1 | 409 | 1 | 417 | 0.0 | 531 |
| MS.gene050469.t1 | AT2G31580 | 51.301 | 269 | 124 | 3 | 258 | 520 | 1 | 268 | 2.88e-87 | 275 |
Find 90 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATAGCAAGCACAAGATTT+TGG | 0.188091 | 7.3:-2238184 | MS.gene050469:CDS |
| ATCAATATAACACTTGTTTC+TGG | 0.196106 | 7.3:-2237647 | MS.gene050469:CDS |
| CATCTGTCTTTGTTAGAAAA+TGG | 0.204561 | 7.3:-2238598 | MS.gene050469:CDS |
| GTAGCACATATTGACATAAT+TGG | 0.217082 | 7.3:-2237414 | MS.gene050469:CDS |
| ATGGAAACAAGGATGAAATT+TGG | 0.228228 | 7.3:+2238824 | None:intergenic |
| GACAAGGATCCTCAGTATTT+CGG | 0.254519 | 7.3:-2237506 | MS.gene050469:CDS |
| CAGGATATAGTATTTGCTTA+TGG | 0.264340 | 7.3:-2237915 | MS.gene050469:CDS |
| ACAAGGATCCTCAGTATTTC+GGG | 0.278719 | 7.3:-2237505 | MS.gene050469:CDS |
| CATTCTCCTCCTTCTTTCCA+TGG | 0.293686 | 7.3:-2238548 | MS.gene050469:CDS |
| GGAAGCTCAACGTAGTTTAA+AGG | 0.298288 | 7.3:-2237595 | MS.gene050469:CDS |
| ATCAATATGATCAATGCTTT+TGG | 0.315113 | 7.3:-2238448 | MS.gene050469:CDS |
| TTCTGGAAGCTTGTTGCATC+TGG | 0.315797 | 7.3:-2237630 | MS.gene050469:CDS |
| ACATAATTGGATCAGCCTTT+TGG | 0.332320 | 7.3:-2237401 | MS.gene050469:CDS |
| ACAAAAGAAAATTGAGGAAT+TGG | 0.336001 | 7.3:-2237562 | MS.gene050469:CDS |
| GTGCTCCGGTTGAAAGAAAA+AGG | 0.368156 | 7.3:-2238235 | MS.gene050469:CDS |
| TTAAGAGCTCTGTCGTCATT+TGG | 0.381239 | 7.3:+2237981 | None:intergenic |
| TGGAAACAAGGATGAAATTT+GGG | 0.383190 | 7.3:+2238825 | None:intergenic |
| TGGCTGTCTTAGAAGAATTT+AGG | 0.384849 | 7.3:-2237938 | MS.gene050469:CDS |
| AGGATATAGTATTTGCTTAT+GGG | 0.386728 | 7.3:-2237914 | MS.gene050469:CDS |
| TTCAAAGTAGTTACATGGTA+AGG | 0.411981 | 7.3:+2238779 | None:intergenic |
| CATGTATCTCAGAAAATCTA+TGG | 0.415936 | 7.3:+2238015 | None:intergenic |
| CCCTTCAAGCATATCTTTCG+TGG | 0.441511 | 7.3:-2238496 | MS.gene050469:CDS |
| TGTTATATTGATTGTTTATG+TGG | 0.458697 | 7.3:+2237658 | None:intergenic |
| CGTCTACATGGGTTGTAGTT+CGG | 0.461228 | 7.3:-2238055 | MS.gene050469:CDS |
| ATTCTCCTCCTTCTTTCCAT+GGG | 0.464754 | 7.3:-2238547 | MS.gene050469:CDS |
| GAATAATTTAACTCAGTTTG+AGG | 0.467897 | 7.3:+2237762 | None:intergenic |
| AATAATTTAACTCAGTTTGA+GGG | 0.471309 | 7.3:+2237763 | None:intergenic |
| TGGGTTGTAGTTCGGATAGA+TGG | 0.474896 | 7.3:-2238047 | MS.gene050469:CDS |
| GTTCTCATCCATCAGGAGAA+TGG | 0.476476 | 7.3:-2237468 | MS.gene050469:CDS |
| GCAAGTTGATGCCGTCTACA+TGG | 0.480368 | 7.3:-2238067 | MS.gene050469:CDS |
| AGACAATGTTCTCATCCATC+AGG | 0.486541 | 7.3:-2237475 | MS.gene050469:CDS |
| GAAGCTCAACGTAGTTTAAA+GGG | 0.486895 | 7.3:-2237594 | MS.gene050469:CDS |
| AGCACGTCTTTCATAGAACT+TGG | 0.487037 | 7.3:+2238655 | None:intergenic |
| TCCACGAAAGATATGCTTGA+AGG | 0.490776 | 7.3:+2238495 | None:intergenic |
| GGAGAGTCTTCTGAAAGTTA+CGG | 0.495476 | 7.3:-2237447 | MS.gene050469:CDS |
| GCCCGGGTGTTCCAACCAAA+AGG | 0.507374 | 7.3:+2237386 | None:intergenic |
| GTGAAGTTTAGAAGCAGTGA+TGG | 0.511270 | 7.3:+2238805 | None:intergenic |
| GCATCAATTCTTCCCGCAGA+TGG | 0.511538 | 7.3:-2238576 | MS.gene050469:CDS |
| GCTGATATAGTTCTCGCATA+CGG | 0.512819 | 7.3:-2238716 | MS.gene050469:CDS |
| CTGATATAGTTCTCGCATAC+GGG | 0.515984 | 7.3:-2238715 | MS.gene050469:CDS |
| CTTCAACTTACGTGATGAGA+TGG | 0.518619 | 7.3:-2237797 | MS.gene050469:CDS |
| GAAATACTGAGGATCCTTGT+CGG | 0.521763 | 7.3:+2237508 | None:intergenic |
| ATGACTTGCCCATGGAAAGA+AGG | 0.531754 | 7.3:+2238539 | None:intergenic |
| TTGTACGAGACTATCTTTCG+TGG | 0.535629 | 7.3:-2237695 | MS.gene050469:CDS |
| CACGTAAGTTGAAGTGAAGA+AGG | 0.536964 | 7.3:+2237806 | None:intergenic |
| TCTCAGAAAATCTATGGAAG+TGG | 0.540427 | 7.3:+2238021 | None:intergenic |
| TCAAATTCAAAGTAGTTACA+TGG | 0.543339 | 7.3:+2238774 | None:intergenic |
| AAGACTCTCCATTCTCCTGA+TGG | 0.543552 | 7.3:+2237460 | None:intergenic |
| GGATATAGTATTTGCTTATG+GGG | 0.545370 | 7.3:-2237913 | MS.gene050469:CDS |
| CTATCTTTCGTGGAGGCAAG+TGG | 0.545570 | 7.3:-2237685 | MS.gene050469:CDS |
| TAATGTCAATTACAATACAC+TGG | 0.556752 | 7.3:-2238330 | MS.gene050469:CDS |
| GATCCTTGTCGGAACATCAC+AGG | 0.557479 | 7.3:+2237519 | None:intergenic |
| GTACACTAAAGATGGTGCTC+CGG | 0.560369 | 7.3:-2238249 | MS.gene050469:CDS |
| TGTCTTAGAAGAATTTAGGC+AGG | 0.561582 | 7.3:-2237934 | MS.gene050469:CDS |
| GGAGATTAACAATGTAAAGC+CGG | 0.564632 | 7.3:-2238117 | MS.gene050469:CDS |
| CATGAGCCTTGTCGTAACAT+TGG | 0.567921 | 7.3:+2238305 | None:intergenic |
| ACGTCTTTCATAGAACTTGG+TGG | 0.569950 | 7.3:+2238658 | None:intergenic |
| TCTCGTACAATCTCAGCAGA+TGG | 0.571700 | 7.3:+2237708 | None:intergenic |
| CAAGTTGATGCCGTCTACAT+GGG | 0.573568 | 7.3:-2238066 | MS.gene050469:CDS |
| GAGAATGCAGTTCCATCTGC+GGG | 0.581278 | 7.3:+2238564 | None:intergenic |
| TCAAAGGACCTCACATACTC+CGG | 0.585379 | 7.3:+2238098 | None:intergenic |
| CCACGAAAGATATGCTTGAA+GGG | 0.586300 | 7.3:+2238496 | None:intergenic |
| AATCCACTGATCTTTATCAA+AGG | 0.587140 | 7.3:-2237860 | MS.gene050469:CDS |
| TAGAAGCAGTGATGGAAACA+AGG | 0.590175 | 7.3:+2238813 | None:intergenic |
| TCAACTACAAAAGAAAATTG+AGG | 0.598875 | 7.3:-2237568 | MS.gene050469:CDS |
| ACTGCCCGTGCATCAAAAGA+AGG | 0.600138 | 7.3:+2237738 | None:intergenic |
| CTACATGCGTGGAAGAAATG+TGG | 0.610806 | 7.3:-2237348 | MS.gene050469:CDS |
| GGAGAATGCAGTTCCATCTG+CGG | 0.614558 | 7.3:+2238563 | None:intergenic |
| ATACTCTTCAAGCACCGCAA+CGG | 0.615343 | 7.3:+2238739 | None:intergenic |
| GGTGGTCTTCTTGAAAACAA+AGG | 0.616388 | 7.3:+2238676 | None:intergenic |
| CGAACTACAACCCATGTAGA+CGG | 0.620939 | 7.3:+2238056 | None:intergenic |
| GATGAATTCTTGCGCCGTTG+CGG | 0.621880 | 7.3:-2238753 | MS.gene050469:CDS |
| GAAGACAATGGTAGGAGATG+TGG | 0.624100 | 7.3:-2238276 | MS.gene050469:CDS |
| CACAAGGTATGACTTGCCCA+TGG | 0.625609 | 7.3:+2238531 | None:intergenic |
| CAACTTGCTATCAAACTCAA+AGG | 0.630910 | 7.3:+2238082 | None:intergenic |
| ATGTAAAGCCGGAGTATGTG+AGG | 0.637922 | 7.3:-2238106 | MS.gene050469:CDS |
| AATGAATGAGAAGGAAGCAA+AGG | 0.639879 | 7.3:-2238408 | MS.gene050469:CDS |
| TAATTTGATGAATTCATGTG+CGG | 0.644263 | 7.3:-2237961 | MS.gene050469:CDS |
| CTGGATCCAATGTTACGACA+AGG | 0.646207 | 7.3:-2238311 | MS.gene050469:CDS |
| TTCAAGCATATCTTTCGTGG+AGG | 0.651523 | 7.3:-2238493 | MS.gene050469:CDS |
| TTTGATGAATTCATGTGCGG+TGG | 0.659483 | 7.3:-2237958 | MS.gene050469:CDS |
| ACTTGCCCATGGAAAGAAGG+AGG | 0.659733 | 7.3:+2238542 | None:intergenic |
| TACGAGACTATCTTTCGTGG+AGG | 0.660506 | 7.3:-2237692 | MS.gene050469:CDS |
| GTGGTGAAGTACACTAAAGA+TGG | 0.664150 | 7.3:-2238257 | MS.gene050469:CDS |
| TGAACGCGGAATGAATGAGA+AGG | 0.664793 | 7.3:-2238417 | MS.gene050469:CDS |
| TCTCCTTTGATAAAGATCAG+TGG | 0.665765 | 7.3:+2237857 | None:intergenic |
| TATTCTATCCCGAAATACTG+AGG | 0.672261 | 7.3:+2237497 | None:intergenic |
| TTGATGAAAAGCTACATGCG+TGG | 0.678018 | 7.3:-2237359 | MS.gene050469:CDS |
| TTGCCTGTGATGTTCCGACA+AGG | 0.690100 | 7.3:-2237522 | MS.gene050469:CDS |
| AGGGCATCTATAGCTGCACA+AGG | 0.721472 | 7.3:+2238515 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTTAACTCAGTTTGA+GGG | + | chr7.3:2238465-2238484 | None:intergenic | 20.0% |
| !!! | TGTTATATTGATTGTTTATG+TGG | + | chr7.3:2238570-2238589 | None:intergenic | 20.0% |
| ! | ACAAAAGAAAATTGAGGAAT+TGG | - | chr7.3:2238663-2238682 | MS.gene050469:CDS | 25.0% |
| ! | AGGATATAGTATTTGCTTAT+GGG | - | chr7.3:2238311-2238330 | MS.gene050469:CDS | 25.0% |
| ! | ATCAATATAACACTTGTTTC+TGG | - | chr7.3:2238578-2238597 | MS.gene050469:CDS | 25.0% |
| ! | GAATAATTTAACTCAGTTTG+AGG | + | chr7.3:2238466-2238485 | None:intergenic | 25.0% |
| ! | TAATGTCAATTACAATACAC+TGG | - | chr7.3:2237895-2237914 | MS.gene050469:CDS | 25.0% |
| ! | TAATTTGATGAATTCATGTG+CGG | - | chr7.3:2238264-2238283 | MS.gene050469:CDS | 25.0% |
| ! | TCAAATTCAAAGTAGTTACA+TGG | + | chr7.3:2237454-2237473 | None:intergenic | 25.0% |
| ! | TCAACTACAAAAGAAAATTG+AGG | - | chr7.3:2238657-2238676 | MS.gene050469:CDS | 25.0% |
| ! | TGAGAAAAAAGAAGAAACAA+TGG | + | chr7.3:2237609-2237628 | None:intergenic | 25.0% |
| !! | ATCAATATGATCAATGCTTT+TGG | - | chr7.3:2237777-2237796 | MS.gene050469:CDS | 25.0% |
| AATCCACTGATCTTTATCAA+AGG | - | chr7.3:2238365-2238384 | MS.gene050469:CDS | 30.0% | |
| ATGGAAACAAGGATGAAATT+TGG | + | chr7.3:2237404-2237423 | None:intergenic | 30.0% | |
| CAGGATATAGTATTTGCTTA+TGG | - | chr7.3:2238310-2238329 | MS.gene050469:CDS | 30.0% | |
| CATCTGTCTTTGTTAGAAAA+TGG | - | chr7.3:2237627-2237646 | MS.gene050469:CDS | 30.0% | |
| CATGTATCTCAGAAAATCTA+TGG | + | chr7.3:2238213-2238232 | None:intergenic | 30.0% | |
| GGATATAGTATTTGCTTATG+GGG | - | chr7.3:2238312-2238331 | MS.gene050469:CDS | 30.0% | |
| GTAGCACATATTGACATAAT+TGG | - | chr7.3:2238811-2238830 | MS.gene050469:CDS | 30.0% | |
| TGGAAACAAGGATGAAATTT+GGG | + | chr7.3:2237403-2237422 | None:intergenic | 30.0% | |
| TTCAAAGTAGTTACATGGTA+AGG | + | chr7.3:2237449-2237468 | None:intergenic | 30.0% | |
| ! | AAATAGCAAGCACAAGATTT+TGG | - | chr7.3:2238041-2238060 | MS.gene050469:CDS | 30.0% |
| ! | TTTCTCCTTTTTCTTTCAAC+CGG | + | chr7.3:2237998-2238017 | None:intergenic | 30.0% |
| AATGAATGAGAAGGAAGCAA+AGG | - | chr7.3:2237817-2237836 | MS.gene050469:CDS | 35.0% | |
| GAAGCTCAACGTAGTTTAAA+GGG | - | chr7.3:2238631-2238650 | MS.gene050469:CDS | 35.0% | |
| GGAGATTAACAATGTAAAGC+CGG | - | chr7.3:2238108-2238127 | MS.gene050469:CDS | 35.0% | |
| TATTCTATCCCGAAATACTG+AGG | + | chr7.3:2238731-2238750 | None:intergenic | 35.0% | |
| TCTCAGAAAATCTATGGAAG+TGG | + | chr7.3:2238207-2238226 | None:intergenic | 35.0% | |
| TCTCCTTTGATAAAGATCAG+TGG | + | chr7.3:2238371-2238390 | None:intergenic | 35.0% | |
| TGGCTGTCTTAGAAGAATTT+AGG | - | chr7.3:2238287-2238306 | MS.gene050469:CDS | 35.0% | |
| TGTCTTAGAAGAATTTAGGC+AGG | - | chr7.3:2238291-2238310 | MS.gene050469:CDS | 35.0% | |
| TTGCATCTGGAAAAAGCAAA+CGG | - | chr7.3:2238608-2238627 | MS.gene050469:CDS | 35.0% | |
| ! | ACATAATTGGATCAGCCTTT+TGG | - | chr7.3:2238824-2238843 | MS.gene050469:CDS | 35.0% |
| ! | ATTCTCCTTCTTTTGATGCA+CGG | - | chr7.3:2238482-2238501 | MS.gene050469:CDS | 35.0% |
| ! | CGAACAGACTATTCTTTTGA+AGG | - | chr7.3:2238066-2238085 | MS.gene050469:CDS | 35.0% |
| ! | GAAGCAAAGGATTTTATCGA+TGG | - | chr7.3:2237830-2237849 | MS.gene050469:CDS | 35.0% |
| !! | ACTATTCTTTTGAAGGAGCT+TGG | - | chr7.3:2238073-2238092 | MS.gene050469:CDS | 35.0% |
| !! | CAACTTGCTATCAAACTCAA+AGG | + | chr7.3:2238146-2238165 | None:intergenic | 35.0% |
| !!! | CTCATGTGTTTTGAAGACAA+TGG | - | chr7.3:2237937-2237956 | MS.gene050469:CDS | 35.0% |
| !!! | TGTGTTTTGAAGACAATGGT+AGG | - | chr7.3:2237941-2237960 | MS.gene050469:CDS | 35.0% |
| ACAAGGATCCTCAGTATTTC+GGG | - | chr7.3:2238720-2238739 | MS.gene050469:CDS | 40.0% | |
| ACGTCTTTCATAGAACTTGG+TGG | + | chr7.3:2237570-2237589 | None:intergenic | 40.0% | |
| AGACAATGTTCTCATCCATC+AGG | - | chr7.3:2238750-2238769 | MS.gene050469:CDS | 40.0% | |
| AGCACGTCTTTCATAGAACT+TGG | + | chr7.3:2237573-2237592 | None:intergenic | 40.0% | |
| ATTCTCCTCCTTCTTTCCAT+GGG | - | chr7.3:2237678-2237697 | MS.gene050469:CDS | 40.0% | |
| CCACGAAAGATATGCTTGAA+GGG | + | chr7.3:2237732-2237751 | None:intergenic | 40.0% | |
| CTGATATAGTTCTCGCATAC+GGG | - | chr7.3:2237510-2237529 | MS.gene050469:CDS | 40.0% | |
| CTTCAACTTACGTGATGAGA+TGG | - | chr7.3:2238428-2238447 | MS.gene050469:CDS | 40.0% | |
| GAAATACTGAGGATCCTTGT+CGG | + | chr7.3:2238720-2238739 | None:intergenic | 40.0% | |
| GACAAGGATCCTCAGTATTT+CGG | - | chr7.3:2238719-2238738 | MS.gene050469:CDS | 40.0% | |
| GCTGATATAGTTCTCGCATA+CGG | - | chr7.3:2237509-2237528 | MS.gene050469:CDS | 40.0% | |
| GGAAGCTCAACGTAGTTTAA+AGG | - | chr7.3:2238630-2238649 | MS.gene050469:CDS | 40.0% | |
| GGTGGTCTTCTTGAAAACAA+AGG | + | chr7.3:2237552-2237571 | None:intergenic | 40.0% | |
| GTGAAGTTTAGAAGCAGTGA+TGG | + | chr7.3:2237423-2237442 | None:intergenic | 40.0% | |
| GTGGTGAAGTACACTAAAGA+TGG | - | chr7.3:2237968-2237987 | MS.gene050469:CDS | 40.0% | |
| TCCACGAAAGATATGCTTGA+AGG | + | chr7.3:2237733-2237752 | None:intergenic | 40.0% | |
| TGCATCTGGAAAAAGCAAAC+GGG | - | chr7.3:2238609-2238628 | MS.gene050469:CDS | 40.0% | |
| TTAAGAGCTCTGTCGTCATT+TGG | + | chr7.3:2238247-2238266 | None:intergenic | 40.0% | |
| TTCAAGCATATCTTTCGTGG+AGG | - | chr7.3:2237732-2237751 | MS.gene050469:CDS | 40.0% | |
| TTGATGAAAAGCTACATGCG+TGG | - | chr7.3:2238866-2238885 | MS.gene050469:CDS | 40.0% | |
| TTGTACGAGACTATCTTTCG+TGG | - | chr7.3:2238530-2238549 | MS.gene050469:CDS | 40.0% | |
| TTTGATGAATTCATGTGCGG+TGG | - | chr7.3:2238267-2238286 | MS.gene050469:CDS | 40.0% | |
| ! | AATTGGATCAGCCTTTTGGT+TGG | - | chr7.3:2238828-2238847 | MS.gene050469:CDS | 40.0% |
| ! | ACGCATGTAGCTTTTCATCA+AGG | + | chr7.3:2238867-2238886 | None:intergenic | 40.0% |
| ! | CACGTAAGTTGAAGTGAAGA+AGG | + | chr7.3:2238422-2238441 | None:intergenic | 40.0% |
| ! | GGAGAGTCTTCTGAAAGTTA+CGG | - | chr7.3:2238778-2238797 | MS.gene050469:CDS | 40.0% |
| ! | TAGAAGCAGTGATGGAAACA+AGG | + | chr7.3:2237415-2237434 | None:intergenic | 40.0% |
| ! | TTCTCCTTCTTTTGATGCAC+GGG | - | chr7.3:2238483-2238502 | MS.gene050469:CDS | 40.0% |
| !! | TGTCAAGTGTTTTGAACTCG+AGG | - | chr7.3:2237364-2237383 | MS.gene050469:CDS | 40.0% |
| AAGACTCTCCATTCTCCTGA+TGG | + | chr7.3:2238768-2238787 | None:intergenic | 45.0% | |
| ATGTAAAGCCGGAGTATGTG+AGG | - | chr7.3:2238119-2238138 | MS.gene050469:CDS | 45.0% | |
| CATTCTCCTCCTTCTTTCCA+TGG | - | chr7.3:2237677-2237696 | MS.gene050469:CDS | 45.0% | |
| CCCTTCAAGCATATCTTTCG+TGG | - | chr7.3:2237729-2237748 | MS.gene050469:CDS | 45.0% | |
| CGAACTACAACCCATGTAGA+CGG | + | chr7.3:2238172-2238191 | None:intergenic | 45.0% | |
| CTACATGCGTGGAAGAAATG+TGG | - | chr7.3:2238877-2238896 | MS.gene050469:CDS | 45.0% | |
| CTGGATCCAATGTTACGACA+AGG | - | chr7.3:2237914-2237933 | MS.gene050469:CDS | 45.0% | |
| GAAGACAATGGTAGGAGATG+TGG | - | chr7.3:2237949-2237968 | MS.gene050469:CDS | 45.0% | |
| GTACACTAAAGATGGTGCTC+CGG | - | chr7.3:2237976-2237995 | MS.gene050469:CDS | 45.0% | |
| GTGCTCCGGTTGAAAGAAAA+AGG | - | chr7.3:2237990-2238009 | MS.gene050469:CDS | 45.0% | |
| GTTCTCATCCATCAGGAGAA+TGG | - | chr7.3:2238757-2238776 | MS.gene050469:CDS | 45.0% | |
| TACGAGACTATCTTTCGTGG+AGG | - | chr7.3:2238533-2238552 | MS.gene050469:CDS | 45.0% | |
| TCAAAGGACCTCACATACTC+CGG | + | chr7.3:2238130-2238149 | None:intergenic | 45.0% | |
| TCTCGTACAATCTCAGCAGA+TGG | + | chr7.3:2238520-2238539 | None:intergenic | 45.0% | |
| TGAACGCGGAATGAATGAGA+AGG | - | chr7.3:2237808-2237827 | MS.gene050469:CDS | 45.0% | |
| TGGGTTGTAGTTCGGATAGA+TGG | - | chr7.3:2238178-2238197 | MS.gene050469:CDS | 45.0% | |
| ! | AGCTTTTCATCAAGGATGCC+CGG | + | chr7.3:2238859-2238878 | None:intergenic | 45.0% |
| ! | ATACTCTTCAAGCACCGCAA+CGG | + | chr7.3:2237489-2237508 | None:intergenic | 45.0% |
| ! | ATGACTTGCCCATGGAAAGA+AGG | + | chr7.3:2237689-2237708 | None:intergenic | 45.0% |
| ! | CATGAGCCTTGTCGTAACAT+TGG | + | chr7.3:2237923-2237942 | None:intergenic | 45.0% |
| ! | CGTCTACATGGGTTGTAGTT+CGG | - | chr7.3:2238170-2238189 | MS.gene050469:CDS | 45.0% |
| !! | CAAGTTGATGCCGTCTACAT+GGG | - | chr7.3:2238159-2238178 | MS.gene050469:CDS | 45.0% |
| !! | TTCTGGAAGCTTGTTGCATC+TGG | - | chr7.3:2238595-2238614 | MS.gene050469:CDS | 45.0% |
| !!! | GAAGGAGCTTGGTGTTTTTG+CGG | - | chr7.3:2238084-2238103 | MS.gene050469:CDS | 45.0% |
| !!! | TTTTGGCGACTTGTTGAACG+CGG | - | chr7.3:2237794-2237813 | MS.gene050469:CDS | 45.0% |
| ACTGCCCGTGCATCAAAAGA+AGG | + | chr7.3:2238490-2238509 | None:intergenic | 50.0% | |
| ACTTGCCCATGGAAAGAAGG+AGG | + | chr7.3:2237686-2237705 | None:intergenic | 50.0% | |
| CTATCTTTCGTGGAGGCAAG+TGG | - | chr7.3:2238540-2238559 | MS.gene050469:CDS | 50.0% | |
| GAGAATGCAGTTCCATCTGC+GGG | + | chr7.3:2237664-2237683 | None:intergenic | 50.0% | |
| GATCCTTGTCGGAACATCAC+AGG | + | chr7.3:2238709-2238728 | None:intergenic | 50.0% | |
| GATGAATTCTTGCGCCGTTG+CGG | - | chr7.3:2237472-2237491 | MS.gene050469:CDS | 50.0% | |
| GCATCAATTCTTCCCGCAGA+TGG | - | chr7.3:2237649-2237668 | MS.gene050469:CDS | 50.0% | |
| GGAGAATGCAGTTCCATCTG+CGG | + | chr7.3:2237665-2237684 | None:intergenic | 50.0% | |
| TTGCCTGTGATGTTCCGACA+AGG | - | chr7.3:2238703-2238722 | MS.gene050469:CDS | 50.0% | |
| ! | AGGGCATCTATAGCTGCACA+AGG | + | chr7.3:2237713-2237732 | None:intergenic | 50.0% |
| ! | CACAAGGTATGACTTGCCCA+TGG | + | chr7.3:2237697-2237716 | None:intergenic | 50.0% |
| ! | GCTTTTCATCAAGGATGCCC+GGG | + | chr7.3:2238858-2238877 | None:intergenic | 50.0% |
| !! | AGCCTTTTGGTTGGAACACC+CGG | - | chr7.3:2238837-2238856 | MS.gene050469:CDS | 50.0% |
| !! | GCAAGTTGATGCCGTCTACA+TGG | - | chr7.3:2238158-2238177 | MS.gene050469:CDS | 50.0% |
| !! | GTGTTTTGAACTCGAGGACG+AGG | - | chr7.3:2237370-2237389 | MS.gene050469:CDS | 50.0% |
| !! | GCCTTTTGGTTGGAACACCC+GGG | - | chr7.3:2238838-2238857 | MS.gene050469:CDS | 55.0% |
| !!! | GGAGCTTGGTGTTTTTGCGG+AGG | - | chr7.3:2238087-2238106 | MS.gene050469:CDS | 55.0% |
| GCCCGGGTGTTCCAACCAAA+AGG | + | chr7.3:2238842-2238861 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 2237341 | 2238906 | 2237341 | ID=MS.gene050469 |
| chr7.3 | mRNA | 2237341 | 2238906 | 2237341 | ID=MS.gene050469.t1;Parent=MS.gene050469 |
| chr7.3 | exon | 2237341 | 2238906 | 2237341 | ID=MS.gene050469.t1.exon1;Parent=MS.gene050469.t1 |
| chr7.3 | CDS | 2237341 | 2238906 | 2237341 | ID=cds.MS.gene050469.t1;Parent=MS.gene050469.t1 |
| Gene Sequence |
| Protein sequence |
