AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050474


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050474.t1 MTR_7g115340 90.039 512 45 4 1 508 1 510 0.0 888
MS.gene050474.t1 MTR_7g115340 98.643 442 6 0 67 508 1 442 0.0 884
MS.gene050474.t1 MTR_1g070380 57.235 463 167 13 65 507 116 567 2.52e-146 431
MS.gene050474.t1 MTR_1g070380 57.328 464 166 14 65 507 116 568 5.40e-145 428
MS.gene050474.t1 MTR_4g127380 41.918 365 180 8 101 454 32 375 1.78e-85 270
MS.gene050474.t1 MTR_2g038020 38.835 412 211 10 78 466 22 415 3.94e-82 263
MS.gene050474.t1 MTR_2g019090 25.641 351 220 8 112 454 311 628 5.26e-25 109
MS.gene050474.t1 MTR_2g019090 24.033 362 201 10 115 441 44 366 6.14e-15 78.2
MS.gene050474.t1 MTR_6g012630 36.842 171 98 4 112 272 46 216 5.83e-25 107
MS.gene050474.t1 MTR_6g012630 36.842 171 98 4 112 272 46 216 8.32e-25 108
MS.gene050474.t1 MTR_6g012630 36.842 171 98 4 112 272 46 216 1.15e-24 107
MS.gene050474.t1 MTR_4g008080 26.546 388 225 14 112 454 226 598 1.07e-22 102
MS.gene050474.t1 MTR_7g011080 33.708 178 101 4 112 272 48 225 4.75e-22 100
MS.gene050474.t1 MTR_7g080630 32.544 169 106 2 114 274 101 269 6.47e-22 96.7
MS.gene050474.t1 MTR_7g080630 32.544 169 106 2 114 274 101 269 7.97e-22 96.7
MS.gene050474.t1 MTR_7g080630 32.544 169 106 2 114 274 101 269 2.39e-21 96.3
MS.gene050474.t1 MTR_3g110650 25.281 356 238 9 114 454 313 655 1.91e-20 95.1
MS.gene050474.t1 MTR_4g093650 36.686 169 99 5 111 273 18 184 1.63e-18 89.4
MS.gene050474.t1 MTR_4g093650 23.797 374 237 12 112 459 265 616 2.63e-18 88.6
MS.gene050474.t1 MTR_2g019090 23.955 359 206 9 115 441 44 367 7.93e-16 80.9
MS.gene050474.t1 MTR_2g019090 23.642 313 198 8 112 416 312 591 2.26e-15 79.3
MS.gene050474.t1 MTR_5g031720 28.191 188 119 5 98 273 21 204 2.06e-15 79.3
MS.gene050474.t1 MTR_5g031720 25.208 361 214 11 114 459 276 595 1.04e-13 73.9
MS.gene050474.t1 MTR_2g009650 26.852 216 132 5 102 299 37 244 8.44e-15 77.8
MS.gene050474.t1 MTR_2g009650 24.706 170 123 1 112 276 330 499 1.82e-13 73.6
MS.gene050474.t1 MTR_4g116880 58.904 73 12 3 160 232 10 64 6.39e-14 67.0
MS.gene050474.t1 MTR_3g091800 23.926 163 117 2 114 276 332 487 6.68e-12 68.6
MS.gene050474.t1 MTR_3g091800 27.841 176 111 4 115 274 65 240 1.04e-11 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050474.t1 AT3G04610 67.342 444 116 11 78 502 119 552 0.0 538
MS.gene050474.t1 AT3G04610 67.342 444 116 12 78 502 143 576 0.0 538
MS.gene050474.t1 AT3G04610 67.342 444 116 12 78 502 143 576 0.0 538
MS.gene050474.t1 AT3G04610 67.342 444 116 11 78 502 119 552 0.0 538
MS.gene050474.t1 AT4G26000 42.147 382 193 8 103 474 64 427 5.37e-91 287
MS.gene050474.t1 AT1G51580 26.648 364 224 10 112 454 275 616 3.70e-25 109
MS.gene050474.t1 AT1G51580 27.184 206 107 6 112 274 17 222 8.95e-11 64.7
MS.gene050474.t1 AT5G15270 25.740 338 187 8 112 437 49 334 1.09e-24 107
MS.gene050474.t1 AT5G15270 26.230 183 131 3 98 279 270 449 3.07e-18 88.2
MS.gene050474.t1 AT5G15270 25.740 338 187 8 112 437 49 334 1.09e-24 107
MS.gene050474.t1 AT5G15270 26.230 183 131 3 98 279 270 449 3.07e-18 88.2
MS.gene050474.t1 AT5G15270 25.740 338 187 8 112 437 49 334 1.20e-24 107
MS.gene050474.t1 AT5G15270 26.230 183 131 3 98 279 270 449 3.64e-18 87.8
MS.gene050474.t1 AT1G14170 31.461 178 104 4 112 272 18 194 4.43e-19 90.1
MS.gene050474.t1 AT1G14170 30.818 159 104 3 117 273 248 402 9.39e-12 67.4
MS.gene050474.t1 AT1G14170 31.461 178 104 4 112 272 43 219 4.83e-19 90.5
MS.gene050474.t1 AT1G14170 30.818 159 104 3 117 273 273 427 9.18e-12 67.8
MS.gene050474.t1 AT1G14170 31.461 178 104 4 112 272 10 186 4.89e-19 90.1
MS.gene050474.t1 AT1G14170 30.818 159 104 3 117 273 240 394 1.01e-11 67.4
MS.gene050474.t1 AT4G18375 26.184 359 207 13 114 442 37 367 2.49e-18 88.6
MS.gene050474.t1 AT4G18375 26.184 359 207 13 114 442 37 367 3.18e-18 88.2
MS.gene050474.t1 AT5G53060 22.543 346 246 5 109 454 321 644 2.44e-16 82.4
MS.gene050474.t1 AT5G53060 26.020 196 121 5 102 274 57 251 8.96e-13 71.2
MS.gene050474.t1 AT5G64390 28.922 204 120 5 111 298 45 239 3.75e-16 82.0
MS.gene050474.t1 AT5G64390 26.012 173 121 2 114 281 453 623 1.54e-13 73.9
MS.gene050474.t1 AT5G64390 28.922 204 120 5 111 298 45 239 4.04e-16 82.0
MS.gene050474.t1 AT5G64390 26.012 173 121 2 114 281 453 623 1.81e-13 73.6
MS.gene050474.t1 AT5G64390 28.922 204 120 5 111 298 45 239 4.15e-16 82.0
MS.gene050474.t1 AT5G64390 26.012 173 121 2 114 281 453 623 1.80e-13 73.6
MS.gene050474.t1 AT5G46190 25.926 351 183 14 114 426 45 356 5.19e-14 75.1
MS.gene050474.t1 AT5G46190 26.801 347 185 14 114 426 45 356 1.01e-13 74.3
MS.gene050474.t1 AT5G46190 26.801 347 185 14 114 426 45 356 1.01e-13 74.3
MS.gene050474.t1 AT5G46190 26.801 347 185 14 114 426 45 356 1.01e-13 74.3
MS.gene050474.t1 AT5G53060 26.020 196 121 5 102 274 57 251 6.56e-13 71.6
MS.gene050474.t1 AT5G53060 27.326 172 117 4 109 276 321 488 1.49e-11 67.4

Find 178 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATACAATTTGATGCTTCT+TGG 0.178221 7.3:+2179370 None:intergenic
TCACAAGCAGGAAGTTTAAT+TGG 0.191863 7.3:-2179420 MS.gene050474:CDS
AGAGATGTAAATTAGAAGTT+TGG 0.227622 7.3:+2183483 None:intergenic
GTAGCCTATGGTGCAGTTTA+TGG 0.255984 7.3:-2175506 MS.gene050474:CDS
TCGTACGCTGATGCTGTTAT+TGG 0.256618 7.3:-2176608 MS.gene050474:CDS
GCAGTTTATGGTGCAAATTA+TGG 0.271012 7.3:-2175494 MS.gene050474:CDS
TGGTGGGGTGGTGGTGGAAC+TGG 0.273387 7.3:+2177260 None:intergenic
CAAAAGGTTGGTGGGATAAT+TGG 0.293067 7.3:-2183069 MS.gene050474:CDS
CACAGCCCGTTCTGAAGTTC+CGG 0.314112 7.3:+2182975 None:intergenic
GATATAGCTTATATTTGTTC+CGG 0.327385 7.3:+2176580 None:intergenic
GCTGGTGGAGGTCCTGGATT+TGG 0.327478 7.3:-2177203 MS.gene050474:CDS
ACGAAGTGATGAAGGATAAT+AGG 0.336901 7.3:+2183602 None:intergenic
GAAGATGGAATCTAGGGTTT+TGG 0.338192 7.3:+2183519 None:intergenic
CAGTTTATGGTGCAAATTAT+GGG 0.346952 7.3:-2175493 MS.gene050474:CDS
AACTCCTCTTGTTTCTTGTA+TGG 0.349928 7.3:+2176532 None:intergenic
CCCCATGATTGGTGGGGTGG+TGG 0.363121 7.3:+2177251 None:intergenic
GATGCTCCTTCAGGTGTGGC+TGG 0.367185 7.3:-2179474 MS.gene050474:CDS
GAATGAAGAAGATGGAATCT+AGG 0.369203 7.3:+2183512 None:intergenic
CAACCCGGCCATTTCTTCTC+AGG 0.371502 7.3:+2183129 None:intergenic
CCAAATGCTGGTGGAGGTCC+TGG 0.372713 7.3:-2177209 MS.gene050474:CDS
CCAATCATGGGGTCCACCTC+AGG 0.379209 7.3:-2177240 MS.gene050474:CDS
CATGATTGGTGGGGTGGTGG+TGG 0.384705 7.3:+2177254 None:intergenic
GAGATGTAAATTAGAAGTTT+GGG 0.387707 7.3:+2183484 None:intergenic
GAGTAAATTACCTTGATTGC+AGG 0.388670 7.3:+2183458 None:intergenic
GCTCGTGTTAAGATTCTTGA+TGG 0.388997 7.3:-2183003 MS.gene050474:CDS
GATGGGTTAGATGCTCCTTC+AGG 0.390825 7.3:-2179483 MS.gene050474:CDS
GACAGGGTGGTTGAAGTAGT+AGG 0.398062 7.3:-2177499 MS.gene050474:CDS
GGAACTGGCATGTGCTCCAC+AGG 0.398724 7.3:+2177275 None:intergenic
GCTCATAAACGGTTAATTGA+TGG 0.400721 7.3:-2179501 MS.gene050474:CDS
CACTGCCTTGTGCACTCCAA+TGG 0.404296 7.3:+2177471 None:intergenic
AAACTTCCTGCTTGTGAGGC+TGG 0.410456 7.3:+2179426 None:intergenic
CCACCTGTTTGTTGCTGCGC+CGG 0.419210 7.3:+2175611 None:intergenic
GCACCGGCGCAGCAACAAAC+AGG 0.420300 7.3:-2175614 MS.gene050474:CDS
GAATTGTATCCTTGGTCTGC+AGG 0.425427 7.3:+2175584 None:intergenic
CCAGGACCTCCACCAGCATT+TGG 0.425866 7.3:+2177209 None:intergenic
TCTCTTCCACCTGCTGTGGA+TGG 0.429032 7.3:-2179534 MS.gene050474:CDS
AATGTTGGTTCCTGCTCAAA+AGG 0.429285 7.3:-2183085 MS.gene050474:CDS
TGCTGTGGATGGCTTATTGA+AGG 0.431392 7.3:-2179523 MS.gene050474:CDS
GCCTCCCGGAACTTCAGAAC+GGG 0.433855 7.3:-2182980 MS.gene050474:CDS
TCCTTCAGGTGTGGCTGGGA+AGG 0.436543 7.3:-2179469 MS.gene050474:CDS
TAATTATCAACTTGCCTTGG+AGG 0.437730 7.3:+2177158 None:intergenic
GGGGCTGTTTGTCCAATGGA+GGG 0.440587 7.3:+2177114 None:intergenic
CACAAGCAGGAAGTTTAATT+GGG 0.440852 7.3:-2179419 MS.gene050474:CDS
AAATTGTATAGTCAGAGTTC+TGG 0.448147 7.3:-2179358 MS.gene050474:CDS
CAAGAAACAAGAGGAGTTCC+TGG 0.449581 7.3:-2176527 MS.gene050474:CDS
CAACCACCCTGTCATCTTGA+AGG 0.450885 7.3:+2177509 None:intergenic
GAGGTGGACCCCATGATTGG+TGG 0.454647 7.3:+2177243 None:intergenic
CACCACCACCCCACCAATCA+TGG 0.458950 7.3:-2177253 MS.gene050474:CDS
ACAGGGTGGTTGAAGTAGTA+GGG 0.462789 7.3:-2177498 MS.gene050474:CDS
ACTGCCTTGTGCACTCCAAT+GGG 0.463713 7.3:+2177472 None:intergenic
AGGTGGACCCCATGATTGGT+GGG 0.466069 7.3:+2177244 None:intergenic
ACAGCCCGTTCTGAAGTTCC+GGG 0.466480 7.3:+2182976 None:intergenic
AAGATTCTTGATGGGCCTCC+CGG 0.466560 7.3:-2182994 MS.gene050474:CDS
AATTGTATAGTCAGAGTTCT+GGG 0.468142 7.3:-2179357 MS.gene050474:CDS
TCGTTGAGCCTGAGAAGAAA+TGG 0.468519 7.3:-2183137 MS.gene050474:CDS
GATCTTTCTCCAGATGCAAA+TGG 0.469181 7.3:-2177309 MS.gene050474:intron
AGGGGCTAAGTGAGAGTGGA+GGG 0.474281 7.3:+2183558 None:intergenic
GGACCCCATGATTGGTGGGG+TGG 0.475178 7.3:+2177248 None:intergenic
TATGGAAGAGATGCTTCAAT+AGG 0.476740 7.3:-2177074 MS.gene050474:CDS
GCTTATTGAAGGCTCATAAA+CGG 0.481382 7.3:-2179512 MS.gene050474:CDS
ACATCTCTACCCTGCAATCA+AGG 0.483716 7.3:-2183468 MS.gene050474:intron
GGCTGTTTGTCCAATGGAGG+GGG 0.485028 7.3:+2177116 None:intergenic
CTCATAAACGGTTAATTGAT+GGG 0.485762 7.3:-2179500 MS.gene050474:CDS
TTCAATAAGCCATCCACAGC+AGG 0.487643 7.3:+2179525 None:intergenic
GTTCCTGCTCAAAAGGTTGG+TGG 0.488563 7.3:-2183078 MS.gene050474:CDS
ACAGCATCAGCGTACGATAG+AGG 0.489668 7.3:+2176614 None:intergenic
GGCTACAGCATGTCCTGGAT+TGG 0.489729 7.3:+2175523 None:intergenic
CCAGGACATGCTGTAGCCTA+TGG 0.493986 7.3:-2175518 MS.gene050474:CDS
TTCTTCTCTTCCACCTGCTG+TGG 0.494945 7.3:-2179538 MS.gene050474:CDS
TTCTTCTCAGGCTCAACGAT+CGG 0.495988 7.3:+2183141 None:intergenic
CATTGGAGTGCACAAGGCAG+TGG 0.499275 7.3:-2177470 MS.gene050474:CDS
CAGGGTAGGAATTGTATCCT+TGG 0.499993 7.3:+2175576 None:intergenic
GAAAAGGGGCTAAGTGAGAG+TGG 0.501137 7.3:+2183554 None:intergenic
AACAGCACAGCAATTGATAC+AGG 0.502245 7.3:-2176462 MS.gene050474:intron
CTTGGAGGTGGCATGAATTG+AGG 0.503745 7.3:+2177173 None:intergenic
CCTGAGGTGGACCCCATGAT+TGG 0.504891 7.3:+2177240 None:intergenic
TTGTGAGAACGAAGTGATGA+AGG 0.506916 7.3:+2183594 None:intergenic
AAGAAATGGCCGGGTTGGCC+TGG 0.507487 7.3:-2183123 MS.gene050474:CDS
GCGTCACCACCTTCCAATCC+AGG 0.508103 7.3:-2175536 MS.gene050474:CDS
CATCATGGTATATCCGCCTA+TGG 0.508306 7.3:-2177092 MS.gene050474:CDS
ATGCTCCTTCAGGTGTGGCT+GGG 0.509317 7.3:-2179473 MS.gene050474:CDS
CAGGGTCTCCCACCAAATGC+TGG 0.510314 7.3:-2177221 MS.gene050474:CDS
CTCCCACCAAATGCTGGTGG+AGG 0.511292 7.3:-2177215 MS.gene050474:CDS
GGGCTGTTTGTCCAATGGAG+GGG 0.511453 7.3:+2177115 None:intergenic
TATGGCGGAAGCTGCAGCAC+CGG 0.517885 7.3:-2175630 MS.gene050474:CDS
TACTCAGTCTGCACCTTCCA+TGG 0.518367 7.3:-2177033 MS.gene050474:CDS
TTATCAACTTGCCTTGGAGG+TGG 0.522949 7.3:+2177161 None:intergenic
CCATAGGCTACAGCATGTCC+TGG 0.523583 7.3:+2175518 None:intergenic
ACCACCACCCCACCAATCAT+GGG 0.524462 7.3:-2177252 MS.gene050474:CDS
AATTAAACTTCCTGCTTGTG+AGG 0.525068 7.3:+2179422 None:intergenic
AATGAAGAAGATGGAATCTA+GGG 0.525306 7.3:+2183513 None:intergenic
TGGGGCTGTTTGTCCAATGG+AGG 0.525515 7.3:+2177113 None:intergenic
CTGAGAAGAAATGGCCGGGT+TGG 0.525773 7.3:-2183128 MS.gene050474:CDS
TAGTAATTATCAACTTGCCT+TGG 0.526071 7.3:+2177155 None:intergenic
GGGTGCGAGAATGAAGAAGA+TGG 0.528572 7.3:+2183504 None:intergenic
GGAACAAAATGAGTCTGAAA+AGG 0.528718 7.3:-2183175 MS.gene050474:CDS
ATTTCAACTGTCATCTCCCC+AGG 0.529708 7.3:+2176509 None:intergenic
AGATGACAGTTGAAATCAGC+GGG 0.541840 7.3:-2176502 MS.gene050474:CDS
CATAGGCGGATATACCATGA+TGG 0.542292 7.3:+2177093 None:intergenic
TTCTGGCAGTGGAAATTCCA+TGG 0.543536 7.3:-2183253 MS.gene050474:intron
CCGGCGCAGCAACAAACAGG+TGG 0.553534 7.3:-2175611 MS.gene050474:CDS
ATAGTCAGAGTTCTGGGAGC+AGG 0.562698 7.3:-2179351 MS.gene050474:intron
GCATAGACAGAACTATGAGC+AGG 0.562952 7.3:+2175557 None:intergenic
ACCTTCCCAGCCACACCTGA+AGG 0.563518 7.3:+2179468 None:intergenic
CTCAATTCATGCCACCTCCA+AGG 0.565069 7.3:-2177172 MS.gene050474:CDS
TGTTTCTTGTATGGTAACAG+TGG 0.565082 7.3:+2176541 None:intergenic
TTCCTGCTCAAAAGGTTGGT+GGG 0.565402 7.3:-2183077 MS.gene050474:CDS
GAAAAGTACCTGTGTGACCA+TGG 0.567170 7.3:+2177016 None:intergenic
GGACCTCCACCAGCATTTGG+TGG 0.567350 7.3:+2177212 None:intergenic
TGAGGAGCAAGTCCAAATCC+AGG 0.567540 7.3:+2177191 None:intergenic
ACACTCTCACCAGGCCAACC+CGG 0.568203 7.3:+2183114 None:intergenic
GGCCTCCCGGAACTTCAGAA+CGG 0.568253 7.3:-2182981 MS.gene050474:CDS
TGAGCCTGAGAAGAAATGGC+CGG 0.568727 7.3:-2183133 MS.gene050474:CDS
TGATGAAGGATAATAGGTGG+TGG 0.568994 7.3:+2183608 None:intergenic
AAGGGGCTAAGTGAGAGTGG+AGG 0.571507 7.3:+2183557 None:intergenic
ATAGGCGGATATACCATGAT+GGG 0.572279 7.3:+2177094 None:intergenic
GAGCCTGAGAAGAAATGGCC+GGG 0.573327 7.3:-2183132 MS.gene050474:CDS
GGAAGGTGCAGACTGAGTAT+TGG 0.573422 7.3:+2177037 None:intergenic
TATTGAAGCATCTCTTCCAT+AGG 0.574272 7.3:+2177076 None:intergenic
CTCGTGTTAAGATTCTTGAT+GGG 0.574443 7.3:-2183002 MS.gene050474:CDS
ACAGCATGTCCTGGATTGGA+AGG 0.577875 7.3:+2175527 None:intergenic
AAGAAACAAGAGGAGTTCCT+GGG 0.578584 7.3:-2176526 MS.gene050474:CDS
TTGGTTCCTGCTCAAAAGGT+TGG 0.581334 7.3:-2183081 MS.gene050474:CDS
AGTAAATTACCTTGATTGCA+GGG 0.581647 7.3:+2183459 None:intergenic
CTAGTGCCAGCCTCACAAGC+AGG 0.582418 7.3:-2179432 MS.gene050474:CDS
AATAGGTGGTGGCATAACAT+TGG 0.584612 7.3:+2183619 None:intergenic
GGATCCCATTGGAGTGCACA+AGG 0.586468 7.3:-2177476 MS.gene050474:CDS
GAACTGGCATGTGCTCCACA+GGG 0.586485 7.3:+2177276 None:intergenic
TTGGACAAACAGCCCCATCA+TGG 0.587088 7.3:-2177107 MS.gene050474:CDS
GATGCTGTTATTGGAACAGC+CGG 0.587215 7.3:-2176599 MS.gene050474:CDS
AACCACCCTGTCATCTTGAA+GGG 0.588607 7.3:+2177510 None:intergenic
GTATCAGCTAAAGATGAGCC+TGG 0.589213 7.3:-2179561 MS.gene050474:CDS
GTTCTGATCAACCTCAGCCA+TGG 0.592521 7.3:+2183236 None:intergenic
TGCACCATAAACTGCACCAT+AGG 0.596471 7.3:+2175502 None:intergenic
TTGTATCCTTGGTCTGCAGG+AGG 0.600150 7.3:+2175587 None:intergenic
GGTGGACCCCATGATTGGTG+GGG 0.600476 7.3:+2177245 None:intergenic
AGCTATATCAGAAGAGCAAG+TGG 0.600575 7.3:-2176566 MS.gene050474:CDS
TGATGGGGCTGTTTGTCCAA+TGG 0.602005 7.3:+2177110 None:intergenic
GACCTCCACCAGCATTTGGT+GGG 0.602365 7.3:+2177213 None:intergenic
GGTGGGATAATTGGTCGGAA+AGG 0.602653 7.3:-2183060 MS.gene050474:CDS
GACAGAACTATGAGCAGGGT+AGG 0.604594 7.3:+2175562 None:intergenic
CAGTGGAAATTCCATGGCTG+AGG 0.606695 7.3:-2183247 MS.gene050474:CDS
CAATCATGGGGTCCACCTCA+GGG 0.610026 7.3:-2177239 MS.gene050474:CDS
GCTATATCAGAAGAGCAAGT+GGG 0.610415 7.3:-2176565 MS.gene050474:CDS
ACAACAGCAAATTGTTGAGA+CGG 0.611449 7.3:-2183196 MS.gene050474:CDS
AATAAGCCATCCACAGCAGG+TGG 0.611934 7.3:+2179528 None:intergenic
ACAAAATGAGTCTGAAAAGG+TGG 0.617900 7.3:-2183172 MS.gene050474:CDS
GGTCTCCCACCAAATGCTGG+TGG 0.624009 7.3:-2177218 MS.gene050474:CDS
TGCACCTTCCATGGTCACAC+AGG 0.626823 7.3:-2177024 MS.gene050474:intron
CAGGGTGGTTGAAGTAGTAG+GGG 0.627870 7.3:-2177497 MS.gene050474:CDS
TGAAGCATCTCTTCCATAGG+CGG 0.628282 7.3:+2177079 None:intergenic
ATTCTGAAAACACTCTCACC+AGG 0.628905 7.3:+2183105 None:intergenic
TGCCCTTCAAGATGACAGGG+TGG 0.630655 7.3:-2177512 MS.gene050474:CDS
GAAGTAGTAGGGGATCCCAT+TGG 0.631279 7.3:-2177487 MS.gene050474:CDS
AGTACCTGTGTGACCATGGA+AGG 0.631574 7.3:+2177020 None:intergenic
AGTTTAATTGGGAAACAAGG+AGG 0.632206 7.3:-2179408 MS.gene050474:CDS
GTTACCATACAAGAAACAAG+AGG 0.636417 7.3:-2176536 MS.gene050474:CDS
GGAAGTTTAATTGGGAAACA+AGG 0.639460 7.3:-2179411 MS.gene050474:CDS
AAGTGATGAAGGATAATAGG+TGG 0.639762 7.3:+2183605 None:intergenic
CTATATCAGAAGAGCAAGTG+GGG 0.641360 7.3:-2176564 MS.gene050474:CDS
GTTAGATGCTCCTTCAGGTG+TGG 0.645046 7.3:-2179478 MS.gene050474:CDS
GCAGGTGGAAGAGAAGAACC+AGG 0.646569 7.3:+2179543 None:intergenic
CGGCGCAGCAACAAACAGGT+GGG 0.647966 7.3:-2175610 MS.gene050474:CDS
AGGTTGGTGGGATAATTGGT+CGG 0.649103 7.3:-2183065 MS.gene050474:CDS
CCACCACCCCACCAATCATG+GGG 0.649451 7.3:-2177251 MS.gene050474:CDS
TTTGGTGGGAGACCCTGAGG+TGG 0.656048 7.3:+2177227 None:intergenic
GGTGGGCCTCCTGCAGACCA+AGG 0.658048 7.3:-2175593 MS.gene050474:CDS
GCATTTGGTGGGAGACCCTG+AGG 0.663331 7.3:+2177224 None:intergenic
CATAGACAGAACTATGAGCA+GGG 0.665116 7.3:+2175558 None:intergenic
TAGGCGGATATACCATGATG+GGG 0.688165 7.3:+2177095 None:intergenic
GCTGAGGTTGATCAGAACGT+AGG 0.692033 7.3:-2183231 MS.gene050474:CDS
TGAGTCTGAAAAGGTGGTTG+AGG 0.692336 7.3:-2183166 MS.gene050474:CDS
GCCCGTTCTGAAGTTCCGGG+AGG 0.698554 7.3:+2182979 None:intergenic
GCATGTCCTGGATTGGAAGG+TGG 0.712815 7.3:+2175530 None:intergenic
CTGGCATGTGCTCCACAGGG+TGG 0.717080 7.3:+2177279 None:intergenic
AGAAACAAGAGGAGTTCCTG+GGG 0.720239 7.3:-2176525 MS.gene050474:CDS
AATGGCTAATAACCACCCTG+TGG 0.739150 7.3:-2177291 MS.gene050474:CDS
GAGATGACAGTTGAAATCAG+CGG 0.760601 7.3:-2176503 MS.gene050474:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr7.3 gene 2175484 2183656 2175484 ID=MS.gene050474
chr7.3 mRNA 2175484 2183656 2175484 ID=MS.gene050474.t1;Parent=MS.gene050474
chr7.3 exon 2183469 2183656 2183469 ID=MS.gene050474.t1.exon1;Parent=MS.gene050474.t1
chr7.3 CDS 2183469 2183656 2183469 ID=cds.MS.gene050474.t1;Parent=MS.gene050474.t1
chr7.3 exon 2182978 2183266 2182978 ID=MS.gene050474.t1.exon2;Parent=MS.gene050474.t1
chr7.3 CDS 2182978 2183266 2182978 ID=cds.MS.gene050474.t1;Parent=MS.gene050474.t1
chr7.3 exon 2179352 2179589 2179352 ID=MS.gene050474.t1.exon3;Parent=MS.gene050474.t1
chr7.3 CDS 2179352 2179589 2179352 ID=cds.MS.gene050474.t1;Parent=MS.gene050474.t1
chr7.3 exon 2177402 2177550 2177402 ID=MS.gene050474.t1.exon4;Parent=MS.gene050474.t1
chr7.3 CDS 2177402 2177550 2177402 ID=cds.MS.gene050474.t1;Parent=MS.gene050474.t1
chr7.3 exon 2177025 2177318 2177025 ID=MS.gene050474.t1.exon5;Parent=MS.gene050474.t1
chr7.3 CDS 2177025 2177318 2177025 ID=cds.MS.gene050474.t1;Parent=MS.gene050474.t1
chr7.3 exon 2176463 2176657 2176463 ID=MS.gene050474.t1.exon6;Parent=MS.gene050474.t1
chr7.3 CDS 2176463 2176657 2176463 ID=cds.MS.gene050474.t1;Parent=MS.gene050474.t1
chr7.3 exon 2175484 2175657 2175484 ID=MS.gene050474.t1.exon7;Parent=MS.gene050474.t1
chr7.3 CDS 2175484 2175657 2175484 ID=cds.MS.gene050474.t1;Parent=MS.gene050474.t1
Gene Sequence

>MS.gene050474

ATGATATACTACGTGCCAATGTTATGCCACCACCTATTATCCTTCATCACTTCGTTCTCACAACTTCTAAGTCACTCCCTCCACTCTCACTTAGCCCCTTTTCCCAAAACCAATACCAAAACCCTAGATTCCATCTTCTTCATTCTCGCACCCAAACTTCTAATTTACATCTCTACCCTGCAATCAAGGTAATTTACTCACCATGTTCGTTTTTTCTATGCATTTATTGTACTCTACACTCACTTATTCACTATTTCTCGCGGTTCAGCAACTTTTTCTCGATAAATCCTTTACAGATCTATCCCCTATTCTCCTTTTAACTCTACTTCTACTTGTTGATATCATGTGGTGTAAAAATTTGATTTTTTTGTTTGTTTGTGTTTCTGGCAGTGGAAATTCCATGGCTGAGGTTGATCAGAACGTAGGTGAATTCGAAGAACAACAGCAAATTGTTGAGACGGAACAAAATGAGTCTGAAAAGGTGGTTGAGGTGCCGATCGTTGAGCCTGAGAAGAAATGGCCGGGTTGGCCTGGTGAGAGTGTTTTCAGAATGTTGGTTCCTGCTCAAAAGGTTGGTGGGATAATTGGTCGGAAAGGAGAGTTTATTAAGAAGATTGTTGAAGAGACACGTGCTCGTGTTAAGATTCTTGATGGGCCTCCCGGAACTTCAGAACGGGCTGTGAGTGTTTTCTCTATTCAGCTTACATCTGTTTTTCTGGTTAAAAAGTTAGCTGCATTTGTATCTTGGTAGCATTGATCTGGAATGATTTATTTTTACCAAGCTCTTTTGGATTTTCTTACTTCCTTCATTTTTTAAAAGGATTCATTTGTTTTTGAATATGGTTTTAAAATTTGTGGTTGAGTTGTAGAATAATATTCATGATATCTGTTTTTTATGGAGCTCTGCAGTGATTGTACTCATTACTTGCAATGATGACATAGTTATTTATTTTATCTGTACTTTTACTAATCCTAGATAAGTACATTATAACAAATAATAAACGAAAAATGTATGCACAGATGTGTGTCTGAGCGTCGCATTTTCTAAGACAAGGACCAATGTGAGAAATATTTACGTATGTAATTAGGTATTTACCTATATAATTTGGGTCCAAAATGCTTGTAAATATTCAGAGTAGGAATTATTGGGAGTGAGGGAAAGTACCGTTAATTCTTTTCAAGGACCTGGAATTTGTGTCTGAAACAACTCATAGCAATTATCCATTTAACTATGTCTCTCTCTGCTTAAGATGTTATGATGAAGAATAAATTGTGGCTGTCTTTCCTTAAGCAATCTTAATTTGCAATGTCCTATTCTCACGACAAGAAATTGTAAGAATAAAAAATATAGCTTGTTTATGGTCAGAACAAAGTGAAACCTTATTCATGTGATACAATGAACACAAAAACTAAGATGAAGAAGACGAAACAAATTCGAAAAAGAATTATGGAAAAAATCCACGAAATATGAATTTAATTCTAACAGAAAATGAATCTGTGCAGGTTCAATATTCCATTTTTAAAGGCAACGACTCAATCATCAATTAGATCCCCAATATTGAAGAACCAAAGTTCCAGATGCAGGATCAGCATTGAGCATTGCAAAGTGCTGAAAGTTTATTAACACGTAGTCATTTTATATCAAAGTACCACGAAGCTCTGCATTCCAGCGGGTAAATTCAAAACCTGGATGATTGATGTCTTGCCGCAGATTCCTAGCATTGAAAAAAAGTTTATCACCAGCTCTAATACAATACCGAAAACAATAAATACCAAACCATAAGTATTTTGTTTGTCATACATGTTATCAAGAAAAAAGGATCCGAAGATTAACCAAGGCTATCAATTAATTTTAATTTTAACACATGGAGTATGTCTATGTTAATATTTGTTATGTTATCACAATAGTTCTTCAGTAGGAAATATTGGTAAATTATAGCTATAATTAACTAAATGCACTGTAGTAAACCAAGACCCAATCAATAAAAAAAAATAGAAGACACTTCCACGGTGACATACATTTTAAATCACACGTCATATCACTTATCGTAATTATGTTCACGTATGACACACTTCCATGTTTCTAAAAGGTTTATCTAGGAAATTCCTTTCACGTTTTAATCGCCATTGGATATGAGTAGTAAAGAATGTTTCTTGTGGTAGTTGGAACTTGGTGATATTAAATATACTGGCAAAGGTTGGGACAAAATGTTGCTTGTTTTCTTCCCTAACAAGAAACAGGTAGAGGGCTGGGGTAAGTTGCACGAGGTGCAGAAGTATTGCATAGATTGGCAGTGGACATAGAAAGGAAAACTGGTAGGGAGCGGGTGCAGGGGCGGTTTCACCCCCCAGCTAGGCTGGGCTAGTGCCCAGGCTCTGCTTCTGCTTTACTTGCAACAAGCCCAACCCATTAGTCGCGACTCCATGCTTCTGCTTTTGCTTTATTTGCTTTTGCCCAGGCTCTGCTTTTCTCTCTATACAAACATTCACTGTGAAATATAAGCTTAGATTCATGATCAGCGTGAAAATCCAAGCAAAATGGTATTTTAGTTTGTGAGATTTGGTGAAGAATTGAGATTTTAATTTTTGAAGCATGATGGTGTTTTCATGTTGTTGTTCAACGTGAAGAAAGGAAGAAGAAGGAGTTGACCTCCTTCCTTCCTTGTTGACCGCGGGTCCCACCTGCAGTTTTGTCCTATATGCTGTTGCTTTTGCACCCCTTTTTTCATATCTGCACCCTTGTTTTTTTAACTCTTTGATTTAGATCTTGTGGCTGTGATGAACCCTTTAGTGATTAAATTTGGACCCCTTGATACATCAATTGGTCCATATTTAATCCAGCTGAGCCAACTTTAATTTTATTTTATTTCTTCACCATTTTTATTATTTTTTACACCATTTTTGGCACTTTAATGCCTCTTTTTTATTCGTAAAAATTTATGATGTGAACTAAATGTAGTTAATTGATCATGAACTTTGTTTAAAGATATGCTATGAGTAGTTATTTATTAGTTAATTTCTTTTCAATCTGTCAAACATTCTATATTTACTAAATGTAGTCTATTTTTATTATTGTATTTACTTTAAACATGTTATAATTATGGAAAAAAGTATTAATCTAAGTTATTATACATTATATGATAATATAAATAGTTTTAATACGTTTTGTGAAACGTTTTGATTAATTCACACCACGAAGACCGTTTTGTTGAAGTACAAGGGCATTTACCTCCTAATTTTATTTAACACGCCATTGTCAGGTTATATTTCTTCTCTCTTATTTCAAATTGTACTTTTGTTAAAAAATAATGAACCTCTTTTATTTCTATTTATGACTATATATATATATATATATATATATATATATATATTATGTCATATATGAATTCGGGATACAAATTTCGCCCAGGCTCTAGAAAAATCCTGGCTCCGCCACTGAGCGGGTGGGCGTTCTAGTTAGACAACGAGTTCATGCACACAATCTTCAAAATTATATTTTAGAATTCTCCATGTTTTTTTTTTCTTTTTCTGTTGTCGATAAAAGATGTTTATCAAAATATCTAAACTGTGCTTCAGTTATCTATCTGAAAACCAACATGCTGTTATATTTGGTACTTTACCACAAGCAGTTTGACATTTTAATTTTCAAAGATTGCAATTGGACGAGGATAGGTTAAATAGTAATGTAGAGTATTTGGGTGCAAGAGCTATTCCTCTTAATAATTTGGCCTTTAAGACTGTTACAAAATTGGTTTGGTGGTGAAGTGAAGGATTCCTTCTGGAATTTTTCCGACAGGTCATGATAATGTAGGTATTAATTGTGGAAGAATATTGGCTATTTAGCTGAATCTCCTATTTGTTGCATTTTTAATAATCAAAGTTGCTTGCATTGCATGCTATCTTACTGATCCCGAGATTGTAGGTGGCATGTAAAGGGCTTTGTAATTGGTGCTCTGGTGGCTTTTTATTGTTTGTCACCATATTATGTCTTCGTGTTGCATATTATCATTAGAGGAAATGTTGAGATCAAAGACAGGCTGATAGTGTTATTTGTTCTTTGTGATTAGGTAATGGTATCAGCTAAAGATGAGCCTGGTTCTTCTCTTCCACCTGCTGTGGATGGCTTATTGAAGGCTCATAAACGGTTAATTGATGGGTTAGATGCTCCTTCAGGTGTGGCTGGGAAGGTTTCTACAAAATTTCTAGTGCCAGCCTCACAAGCAGGAAGTTTAATTGGGAAACAAGGAGGCACCGTAAAATCTATCCAAGAAGCATCAAATTGTATAGTCAGAGTTCTGGGAGCAGGTATCTACTCATATTTGATTTAAAAACTTTCAATCTGATTGCTGGATTGTCAATTTTATTATTACTTAGCATTCTGTTATTCTGAGAAGTTCATCGTAGCTTGTATTACAAATTTTCCTTACCCTAATTTTATATCAGAGATAAGTTTGGGATTCATCCACTGGGTACTAGAGCTGTAATAGAGCAATAGTGTAAATATGCTTTTAAGTCTATTAACTGGGATGGTTCCAAGTTCCTCTTCCTATTCGTCAAATGTGTTTTGTTCTTGTCACTGTTTGGTTTATTACCATTTTTACTATTATTGATACTCCTCTCTTTAATTGTCGCTTTTGTAGAAGAATTTTGTTCCTAGAGGTTAATGAGTTTGATCCATATATGGTTTCGGATAGAACATTATGGCGTAATTTTATCCCTGTAGCCGACCCCACTTAGTGGGATAAGGCTTGGTTGTTGTTGTTACCAAGGTTGTTAAACGCACGCTGTAGATCGTGAGATCGTACGATCTCACGCTTTCTTCTCCCTAAACCGTGCCGGCGCGGTGCGAAAATCGTTGAAGAGGGAGGCGCGGCCGGCGCAGAGGTAGATCGCAAGATCGTGGAAGCGGCGAGTTTTCTCACACCGAATTTGTACCTTTTAACCCATATGACCCCGGTTCGCGGAGAAGAGTTCGTTGACCAAAACGACATGCTTTACAGCGGAAGAGAAATGGATGTTGAAGAGTCAAAACAGTTGAGCTTGCCTTTCACGCAGTCAATATTAAAAGCTGATTTATTATTTTTGGAAAGTGTGCCGCTAATTGCTTGTTATTCTTAATTTTATTTTATAATGCTTCTTTTACGGGAATTTTTATTTTTTAATGCTAATTTGCCAAGTTTACTTTTTTAATGCTAGTAATTTGCTAAGTTTACTCTATTTTTAAAAAGATTTCATTGTTTTTAGCCTTAATAAATCTTATATTTAATATATTATTTCATATATTTTAAAAGCTTTATGCTAACAAATACTTAGATAGTTTTTTTTCTAATAAAAATTAATTAAATAGTTAATTCGTTATTTATTTAACATAAGTACTATTTAATTTAATCATATGATTTAATTATATAACACTATATGTAGTATTTTTTTTGTTTGAAGAAACATTCTATACTTAGTAATATTAAGTGTGTTTCTTAATTATAGTATAATCTTGTCTTTGGTGGGATCTTACGATCCTTGTTACGATCTCACGATTTACGATTTTTCTATACCCAAACGATCTTAGATGGGATCTCGATTTTGACAACCATGGTTATTACTGTGATTGTTTTCAAAGCTCAATGAATGAGATAATAAATAATCAAGAATATTAAGGAATAAGACATGATTTCATAAAAAATAATAAAATTTATTGATTGTATTAATATGTGTAAATACCCTTAAAACAACAAGTTAAAAGAAACGGAGGGAGTATCATGTAAGCACTTAGATATGCATAGCTAACTTCTATCATTACCACCTAAACCCTAAACTTACGATAATTCCCGCTATTTATTAATTCAGTTGTCAGATTCATGTATTCTAATCTAAGTAGTTTAAAACTTTCCCTTTCTAAAACCTTTTTTTGTCTATCCTTTTCATTAAAAATTATTTCTAAGATACAATTTGAAGTTTATGCTTCCAGTCTTCTGTAGTTTATGCTTTTAGATAAAATATTAGTGGAAATTTGAAGTTTTTTTCTCTTTCCGTTTTGGTTCTTGGATGGGCTGTTTGACATTCTCTAGTTGCTAAGCATCTTGCACCTCTGTTGTTTTTTTGTCTGCAGAAGATCTGCCTGTTTTTGCCCTTCAAGATGACAGGGTGGTTGAAGTAGTAGGGGATCCCATTGGAGTGCACAAGGCAGTGGAGATGATTGCATCCCACCTTAAGAAATTTTTAGTTGATCGCAGTATAATTCCAATTTTTGAAATGAATGTAAGTGTGTTAATTCATATTACACTTGTGAAGAATCTATCTTATGCTTACCAAGGAATGCAACTAATTTGATCTTTCTCCAGATGCAAATGGCTAATAACCACCCTGTGGAGCACATGCCAGTTCCACCACCACCCCACCAATCATGGGGTCCACCTCAGGGTCTCCCACCAAATGCTGGTGGAGGTCCTGGATTTGGACTTGCTCCTCAATTCATGCCACCTCCAAGGCAAGTTGATAATTACTACCCACCAGCTGAAATGCCCCCTCCATTGGACAAACAGCCCCATCATGGTATATCCGCCTATGGAAGAGATGCTTCAATAGGAGTTCACGCATCATCCAATACTCAGTCTGCACCTTCCATGGTCACACAGGTACTTTTCTTATTTCAAATTTTGTTTTCTAATAATCCCCAAAAGGAAGTAGTATGGTGATTGGGATGATATATTGGCATTACATTTTTATGTAGTTTGCATTTTTCTGGATGTCTTAGAACTCGCCAGTCTGTCTGTCGTTGTTTATGTAGTTTGATGAGACGACTTGTTGACTGCTGCTTCATGAATTTTGTGCAATAGCCGTGGTAAAGGCTAGTTGTGAAACTTTACCAGTGTTGATTGACATTTGCTGTTGCTTTCCACTTTGCTGTTTAGATTTAAGATAGCAGAGGGTGATGTTAGGTTCCACACTTGGATGATAAGCTGAAATGATACTAATTGTCTTGCTAATGCTGTTGTGGCACAGATCACGCAGCAAATGCAAATTCCTCTATCGTACGCTGATGCTGTTATTGGAACAGCCGGAACAAATATAAGCTATATCAGAAGAGCAAGTGGGGCCACTGTTACCATACAAGAAACAAGAGGAGTTCCTGGGGAGATGACAGTTGAAATCAGCGGGACTGCTTCTCAAGTTCAAACAGCACAGCAATTGATACAGGTAATCCTGATCTTGGTCTTTGATTTGCTCCAGCCGTTCTAATATTAGTGTTGTCCTAGGTTTTCTTCAGACTAGGAAAAACTATAAATGAATAAAATAATATTGTAATTTTACAAACTTTTACTCATTTTTTTTTTTGAAGAAGCTAAATTAGCCCACCCTAATTGGCAAACTTTTCCTCATTAACAGTTGGTTATTAACCATTGTTATACTTGGAGGTAGAATTGGAATGAAATAATTAATGCCACTATTAAAAAACAAAACAGTTATTTTAAGACATTTTTATATGTCGAAGCTGCATGCATTTTAGTTTATACATTACAGTTCATAGCATGCGGCATGTCTTGGAAATTTGTTTTAGATTTATACTGAATTAGAGTAATGAAAAAATATTGAATCGTTTACTGGGTTCCTAAAAGATTCATTTTGCGCTAGAGTTTTATCGAAGATTAATTTTTTATGTAAAAACAGAGAGTAAATTATAAGATTGTTAAATTTCTAAATTAAACTATTATCCTTCCACGAGTATTTTTTCAATAAGTTGACTGGTTGAGTAAGAAATTTGTCATTTTATCCATCCTCACCCCGTCATTTATTTGATGCAAGGAAATTATCTTCAATCTTTTCTGTTATTTCATTTCATGCAGTATCTTTATTTTCTCAATTTGTTTCCATATAAAAGCTATGAATTTACTGTGCATAGTCCTATCTCACCGAATGCATGTCTTGGATGTTAGAACTGATTGACCTAACATTATCAATTTGCCTTGTACTCAAGCAATATAATCCTGAATCTGTGGTGCAGAATTTTATGGCGGAAGCTGCAGCACCGGCGCAGCAACAAACAGGTGGGCCTCCTGCAGACCAAGGATACAATTCCTACCCTGCTCATAGTTCTGTCTATGCGTCACCACCTTCCAATCCAGGACATGCTGTAGCCTATGGTGCAGTTTATGGTGCAAATTATGGGTACCAATGA

Protein sequence

>MS.gene050474.t1

MIYYVPMLCHHLLSFITSFSQLLSHSLHSHLAPFPKTNTKTLDSIFFILAPKLLIYISTLQSSGNSMAEVDQNVGEFEEQQQIVETEQNESEKVVEVPIVEPEKKWPGWPGESVFRMLVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTSERAVMVSAKDEPGSSLPPAVDGLLKAHKRLIDGLDAPSGVAGKVSTKFLVPASQAGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPVFALQDDRVVEVVGDPIGVHKAVEMIASHLKKFLVDRSIIPIFEMNMQMANNHPVEHMPVPPPPHQSWGPPQGLPPNAGGGPGFGLAPQFMPPPRQVDNYYPPAEMPPPLDKQPHHGISAYGRDASIGVHASSNTQSAPSMVTQITQQMQIPLSYADAVIGTAGTNISYIRRASGATVTIQETRGVPGEMTVEISGTASQVQTAQQLIQNFMAEAAAPAQQQTGGPPADQGYNSYPAHSSVYASPPSNPGHAVAYGAVYGANYGYQ