Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050474.t1 | KEH24566.1 | 88.9 | 512 | 51 | 4 | 1 | 508 | 1 | 510 | 3.10E-235 | 824.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050474.t1 | Q9SR13 | 66.2 | 426 | 124 | 8 | 90 | 507 | 164 | 577 | 3.8e-133 | 476.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050474.t1 | A0A072U5B1 | 88.9 | 512 | 51 | 4 | 1 | 508 | 1 | 510 | 2.2e-235 | 824.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050474 | MS.gene050540 | 0.947144 | 1.19E-105 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene050474 | MS.gene064542 | PPI |
| MS.gene050474 | MS.gene035805 | PPI |
| MS.gene050474 | MS.gene73119 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050474.t1 | MTR_7g115340 | 90.039 | 512 | 45 | 4 | 1 | 508 | 1 | 510 | 0.0 | 888 |
| MS.gene050474.t1 | MTR_7g115340 | 98.643 | 442 | 6 | 0 | 67 | 508 | 1 | 442 | 0.0 | 884 |
| MS.gene050474.t1 | MTR_1g070380 | 57.235 | 463 | 167 | 13 | 65 | 507 | 116 | 567 | 2.52e-146 | 431 |
| MS.gene050474.t1 | MTR_1g070380 | 57.328 | 464 | 166 | 14 | 65 | 507 | 116 | 568 | 5.40e-145 | 428 |
| MS.gene050474.t1 | MTR_4g127380 | 41.918 | 365 | 180 | 8 | 101 | 454 | 32 | 375 | 1.78e-85 | 270 |
| MS.gene050474.t1 | MTR_2g038020 | 38.835 | 412 | 211 | 10 | 78 | 466 | 22 | 415 | 3.94e-82 | 263 |
| MS.gene050474.t1 | MTR_2g019090 | 25.641 | 351 | 220 | 8 | 112 | 454 | 311 | 628 | 5.26e-25 | 109 |
| MS.gene050474.t1 | MTR_2g019090 | 24.033 | 362 | 201 | 10 | 115 | 441 | 44 | 366 | 6.14e-15 | 78.2 |
| MS.gene050474.t1 | MTR_6g012630 | 36.842 | 171 | 98 | 4 | 112 | 272 | 46 | 216 | 5.83e-25 | 107 |
| MS.gene050474.t1 | MTR_6g012630 | 36.842 | 171 | 98 | 4 | 112 | 272 | 46 | 216 | 8.32e-25 | 108 |
| MS.gene050474.t1 | MTR_6g012630 | 36.842 | 171 | 98 | 4 | 112 | 272 | 46 | 216 | 1.15e-24 | 107 |
| MS.gene050474.t1 | MTR_4g008080 | 26.546 | 388 | 225 | 14 | 112 | 454 | 226 | 598 | 1.07e-22 | 102 |
| MS.gene050474.t1 | MTR_7g011080 | 33.708 | 178 | 101 | 4 | 112 | 272 | 48 | 225 | 4.75e-22 | 100 |
| MS.gene050474.t1 | MTR_7g080630 | 32.544 | 169 | 106 | 2 | 114 | 274 | 101 | 269 | 6.47e-22 | 96.7 |
| MS.gene050474.t1 | MTR_7g080630 | 32.544 | 169 | 106 | 2 | 114 | 274 | 101 | 269 | 7.97e-22 | 96.7 |
| MS.gene050474.t1 | MTR_7g080630 | 32.544 | 169 | 106 | 2 | 114 | 274 | 101 | 269 | 2.39e-21 | 96.3 |
| MS.gene050474.t1 | MTR_3g110650 | 25.281 | 356 | 238 | 9 | 114 | 454 | 313 | 655 | 1.91e-20 | 95.1 |
| MS.gene050474.t1 | MTR_4g093650 | 36.686 | 169 | 99 | 5 | 111 | 273 | 18 | 184 | 1.63e-18 | 89.4 |
| MS.gene050474.t1 | MTR_4g093650 | 23.797 | 374 | 237 | 12 | 112 | 459 | 265 | 616 | 2.63e-18 | 88.6 |
| MS.gene050474.t1 | MTR_2g019090 | 23.955 | 359 | 206 | 9 | 115 | 441 | 44 | 367 | 7.93e-16 | 80.9 |
| MS.gene050474.t1 | MTR_2g019090 | 23.642 | 313 | 198 | 8 | 112 | 416 | 312 | 591 | 2.26e-15 | 79.3 |
| MS.gene050474.t1 | MTR_5g031720 | 28.191 | 188 | 119 | 5 | 98 | 273 | 21 | 204 | 2.06e-15 | 79.3 |
| MS.gene050474.t1 | MTR_5g031720 | 25.208 | 361 | 214 | 11 | 114 | 459 | 276 | 595 | 1.04e-13 | 73.9 |
| MS.gene050474.t1 | MTR_2g009650 | 26.852 | 216 | 132 | 5 | 102 | 299 | 37 | 244 | 8.44e-15 | 77.8 |
| MS.gene050474.t1 | MTR_2g009650 | 24.706 | 170 | 123 | 1 | 112 | 276 | 330 | 499 | 1.82e-13 | 73.6 |
| MS.gene050474.t1 | MTR_4g116880 | 58.904 | 73 | 12 | 3 | 160 | 232 | 10 | 64 | 6.39e-14 | 67.0 |
| MS.gene050474.t1 | MTR_3g091800 | 23.926 | 163 | 117 | 2 | 114 | 276 | 332 | 487 | 6.68e-12 | 68.6 |
| MS.gene050474.t1 | MTR_3g091800 | 27.841 | 176 | 111 | 4 | 115 | 274 | 65 | 240 | 1.04e-11 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050474.t1 | AT3G04610 | 67.342 | 444 | 116 | 11 | 78 | 502 | 119 | 552 | 0.0 | 538 |
| MS.gene050474.t1 | AT3G04610 | 67.342 | 444 | 116 | 12 | 78 | 502 | 143 | 576 | 0.0 | 538 |
| MS.gene050474.t1 | AT3G04610 | 67.342 | 444 | 116 | 12 | 78 | 502 | 143 | 576 | 0.0 | 538 |
| MS.gene050474.t1 | AT3G04610 | 67.342 | 444 | 116 | 11 | 78 | 502 | 119 | 552 | 0.0 | 538 |
| MS.gene050474.t1 | AT4G26000 | 42.147 | 382 | 193 | 8 | 103 | 474 | 64 | 427 | 5.37e-91 | 287 |
| MS.gene050474.t1 | AT1G51580 | 26.648 | 364 | 224 | 10 | 112 | 454 | 275 | 616 | 3.70e-25 | 109 |
| MS.gene050474.t1 | AT1G51580 | 27.184 | 206 | 107 | 6 | 112 | 274 | 17 | 222 | 8.95e-11 | 64.7 |
| MS.gene050474.t1 | AT5G15270 | 25.740 | 338 | 187 | 8 | 112 | 437 | 49 | 334 | 1.09e-24 | 107 |
| MS.gene050474.t1 | AT5G15270 | 26.230 | 183 | 131 | 3 | 98 | 279 | 270 | 449 | 3.07e-18 | 88.2 |
| MS.gene050474.t1 | AT5G15270 | 25.740 | 338 | 187 | 8 | 112 | 437 | 49 | 334 | 1.09e-24 | 107 |
| MS.gene050474.t1 | AT5G15270 | 26.230 | 183 | 131 | 3 | 98 | 279 | 270 | 449 | 3.07e-18 | 88.2 |
| MS.gene050474.t1 | AT5G15270 | 25.740 | 338 | 187 | 8 | 112 | 437 | 49 | 334 | 1.20e-24 | 107 |
| MS.gene050474.t1 | AT5G15270 | 26.230 | 183 | 131 | 3 | 98 | 279 | 270 | 449 | 3.64e-18 | 87.8 |
| MS.gene050474.t1 | AT1G14170 | 31.461 | 178 | 104 | 4 | 112 | 272 | 18 | 194 | 4.43e-19 | 90.1 |
| MS.gene050474.t1 | AT1G14170 | 30.818 | 159 | 104 | 3 | 117 | 273 | 248 | 402 | 9.39e-12 | 67.4 |
| MS.gene050474.t1 | AT1G14170 | 31.461 | 178 | 104 | 4 | 112 | 272 | 43 | 219 | 4.83e-19 | 90.5 |
| MS.gene050474.t1 | AT1G14170 | 30.818 | 159 | 104 | 3 | 117 | 273 | 273 | 427 | 9.18e-12 | 67.8 |
| MS.gene050474.t1 | AT1G14170 | 31.461 | 178 | 104 | 4 | 112 | 272 | 10 | 186 | 4.89e-19 | 90.1 |
| MS.gene050474.t1 | AT1G14170 | 30.818 | 159 | 104 | 3 | 117 | 273 | 240 | 394 | 1.01e-11 | 67.4 |
| MS.gene050474.t1 | AT4G18375 | 26.184 | 359 | 207 | 13 | 114 | 442 | 37 | 367 | 2.49e-18 | 88.6 |
| MS.gene050474.t1 | AT4G18375 | 26.184 | 359 | 207 | 13 | 114 | 442 | 37 | 367 | 3.18e-18 | 88.2 |
| MS.gene050474.t1 | AT5G53060 | 22.543 | 346 | 246 | 5 | 109 | 454 | 321 | 644 | 2.44e-16 | 82.4 |
| MS.gene050474.t1 | AT5G53060 | 26.020 | 196 | 121 | 5 | 102 | 274 | 57 | 251 | 8.96e-13 | 71.2 |
| MS.gene050474.t1 | AT5G64390 | 28.922 | 204 | 120 | 5 | 111 | 298 | 45 | 239 | 3.75e-16 | 82.0 |
| MS.gene050474.t1 | AT5G64390 | 26.012 | 173 | 121 | 2 | 114 | 281 | 453 | 623 | 1.54e-13 | 73.9 |
| MS.gene050474.t1 | AT5G64390 | 28.922 | 204 | 120 | 5 | 111 | 298 | 45 | 239 | 4.04e-16 | 82.0 |
| MS.gene050474.t1 | AT5G64390 | 26.012 | 173 | 121 | 2 | 114 | 281 | 453 | 623 | 1.81e-13 | 73.6 |
| MS.gene050474.t1 | AT5G64390 | 28.922 | 204 | 120 | 5 | 111 | 298 | 45 | 239 | 4.15e-16 | 82.0 |
| MS.gene050474.t1 | AT5G64390 | 26.012 | 173 | 121 | 2 | 114 | 281 | 453 | 623 | 1.80e-13 | 73.6 |
| MS.gene050474.t1 | AT5G46190 | 25.926 | 351 | 183 | 14 | 114 | 426 | 45 | 356 | 5.19e-14 | 75.1 |
| MS.gene050474.t1 | AT5G46190 | 26.801 | 347 | 185 | 14 | 114 | 426 | 45 | 356 | 1.01e-13 | 74.3 |
| MS.gene050474.t1 | AT5G46190 | 26.801 | 347 | 185 | 14 | 114 | 426 | 45 | 356 | 1.01e-13 | 74.3 |
| MS.gene050474.t1 | AT5G46190 | 26.801 | 347 | 185 | 14 | 114 | 426 | 45 | 356 | 1.01e-13 | 74.3 |
| MS.gene050474.t1 | AT5G53060 | 26.020 | 196 | 121 | 5 | 102 | 274 | 57 | 251 | 6.56e-13 | 71.6 |
| MS.gene050474.t1 | AT5G53060 | 27.326 | 172 | 117 | 4 | 109 | 276 | 321 | 488 | 1.49e-11 | 67.4 |
Find 178 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATACAATTTGATGCTTCT+TGG | 0.178221 | 7.3:+2179370 | None:intergenic |
| TCACAAGCAGGAAGTTTAAT+TGG | 0.191863 | 7.3:-2179420 | MS.gene050474:CDS |
| AGAGATGTAAATTAGAAGTT+TGG | 0.227622 | 7.3:+2183483 | None:intergenic |
| GTAGCCTATGGTGCAGTTTA+TGG | 0.255984 | 7.3:-2175506 | MS.gene050474:CDS |
| TCGTACGCTGATGCTGTTAT+TGG | 0.256618 | 7.3:-2176608 | MS.gene050474:CDS |
| GCAGTTTATGGTGCAAATTA+TGG | 0.271012 | 7.3:-2175494 | MS.gene050474:CDS |
| TGGTGGGGTGGTGGTGGAAC+TGG | 0.273387 | 7.3:+2177260 | None:intergenic |
| CAAAAGGTTGGTGGGATAAT+TGG | 0.293067 | 7.3:-2183069 | MS.gene050474:CDS |
| CACAGCCCGTTCTGAAGTTC+CGG | 0.314112 | 7.3:+2182975 | None:intergenic |
| GATATAGCTTATATTTGTTC+CGG | 0.327385 | 7.3:+2176580 | None:intergenic |
| GCTGGTGGAGGTCCTGGATT+TGG | 0.327478 | 7.3:-2177203 | MS.gene050474:CDS |
| ACGAAGTGATGAAGGATAAT+AGG | 0.336901 | 7.3:+2183602 | None:intergenic |
| GAAGATGGAATCTAGGGTTT+TGG | 0.338192 | 7.3:+2183519 | None:intergenic |
| CAGTTTATGGTGCAAATTAT+GGG | 0.346952 | 7.3:-2175493 | MS.gene050474:CDS |
| AACTCCTCTTGTTTCTTGTA+TGG | 0.349928 | 7.3:+2176532 | None:intergenic |
| CCCCATGATTGGTGGGGTGG+TGG | 0.363121 | 7.3:+2177251 | None:intergenic |
| GATGCTCCTTCAGGTGTGGC+TGG | 0.367185 | 7.3:-2179474 | MS.gene050474:CDS |
| GAATGAAGAAGATGGAATCT+AGG | 0.369203 | 7.3:+2183512 | None:intergenic |
| CAACCCGGCCATTTCTTCTC+AGG | 0.371502 | 7.3:+2183129 | None:intergenic |
| CCAAATGCTGGTGGAGGTCC+TGG | 0.372713 | 7.3:-2177209 | MS.gene050474:CDS |
| CCAATCATGGGGTCCACCTC+AGG | 0.379209 | 7.3:-2177240 | MS.gene050474:CDS |
| CATGATTGGTGGGGTGGTGG+TGG | 0.384705 | 7.3:+2177254 | None:intergenic |
| GAGATGTAAATTAGAAGTTT+GGG | 0.387707 | 7.3:+2183484 | None:intergenic |
| GAGTAAATTACCTTGATTGC+AGG | 0.388670 | 7.3:+2183458 | None:intergenic |
| GCTCGTGTTAAGATTCTTGA+TGG | 0.388997 | 7.3:-2183003 | MS.gene050474:CDS |
| GATGGGTTAGATGCTCCTTC+AGG | 0.390825 | 7.3:-2179483 | MS.gene050474:CDS |
| GACAGGGTGGTTGAAGTAGT+AGG | 0.398062 | 7.3:-2177499 | MS.gene050474:CDS |
| GGAACTGGCATGTGCTCCAC+AGG | 0.398724 | 7.3:+2177275 | None:intergenic |
| GCTCATAAACGGTTAATTGA+TGG | 0.400721 | 7.3:-2179501 | MS.gene050474:CDS |
| CACTGCCTTGTGCACTCCAA+TGG | 0.404296 | 7.3:+2177471 | None:intergenic |
| AAACTTCCTGCTTGTGAGGC+TGG | 0.410456 | 7.3:+2179426 | None:intergenic |
| CCACCTGTTTGTTGCTGCGC+CGG | 0.419210 | 7.3:+2175611 | None:intergenic |
| GCACCGGCGCAGCAACAAAC+AGG | 0.420300 | 7.3:-2175614 | MS.gene050474:CDS |
| GAATTGTATCCTTGGTCTGC+AGG | 0.425427 | 7.3:+2175584 | None:intergenic |
| CCAGGACCTCCACCAGCATT+TGG | 0.425866 | 7.3:+2177209 | None:intergenic |
| TCTCTTCCACCTGCTGTGGA+TGG | 0.429032 | 7.3:-2179534 | MS.gene050474:CDS |
| AATGTTGGTTCCTGCTCAAA+AGG | 0.429285 | 7.3:-2183085 | MS.gene050474:CDS |
| TGCTGTGGATGGCTTATTGA+AGG | 0.431392 | 7.3:-2179523 | MS.gene050474:CDS |
| GCCTCCCGGAACTTCAGAAC+GGG | 0.433855 | 7.3:-2182980 | MS.gene050474:CDS |
| TCCTTCAGGTGTGGCTGGGA+AGG | 0.436543 | 7.3:-2179469 | MS.gene050474:CDS |
| TAATTATCAACTTGCCTTGG+AGG | 0.437730 | 7.3:+2177158 | None:intergenic |
| GGGGCTGTTTGTCCAATGGA+GGG | 0.440587 | 7.3:+2177114 | None:intergenic |
| CACAAGCAGGAAGTTTAATT+GGG | 0.440852 | 7.3:-2179419 | MS.gene050474:CDS |
| AAATTGTATAGTCAGAGTTC+TGG | 0.448147 | 7.3:-2179358 | MS.gene050474:CDS |
| CAAGAAACAAGAGGAGTTCC+TGG | 0.449581 | 7.3:-2176527 | MS.gene050474:CDS |
| CAACCACCCTGTCATCTTGA+AGG | 0.450885 | 7.3:+2177509 | None:intergenic |
| GAGGTGGACCCCATGATTGG+TGG | 0.454647 | 7.3:+2177243 | None:intergenic |
| CACCACCACCCCACCAATCA+TGG | 0.458950 | 7.3:-2177253 | MS.gene050474:CDS |
| ACAGGGTGGTTGAAGTAGTA+GGG | 0.462789 | 7.3:-2177498 | MS.gene050474:CDS |
| ACTGCCTTGTGCACTCCAAT+GGG | 0.463713 | 7.3:+2177472 | None:intergenic |
| AGGTGGACCCCATGATTGGT+GGG | 0.466069 | 7.3:+2177244 | None:intergenic |
| ACAGCCCGTTCTGAAGTTCC+GGG | 0.466480 | 7.3:+2182976 | None:intergenic |
| AAGATTCTTGATGGGCCTCC+CGG | 0.466560 | 7.3:-2182994 | MS.gene050474:CDS |
| AATTGTATAGTCAGAGTTCT+GGG | 0.468142 | 7.3:-2179357 | MS.gene050474:CDS |
| TCGTTGAGCCTGAGAAGAAA+TGG | 0.468519 | 7.3:-2183137 | MS.gene050474:CDS |
| GATCTTTCTCCAGATGCAAA+TGG | 0.469181 | 7.3:-2177309 | MS.gene050474:intron |
| AGGGGCTAAGTGAGAGTGGA+GGG | 0.474281 | 7.3:+2183558 | None:intergenic |
| GGACCCCATGATTGGTGGGG+TGG | 0.475178 | 7.3:+2177248 | None:intergenic |
| TATGGAAGAGATGCTTCAAT+AGG | 0.476740 | 7.3:-2177074 | MS.gene050474:CDS |
| GCTTATTGAAGGCTCATAAA+CGG | 0.481382 | 7.3:-2179512 | MS.gene050474:CDS |
| ACATCTCTACCCTGCAATCA+AGG | 0.483716 | 7.3:-2183468 | MS.gene050474:intron |
| GGCTGTTTGTCCAATGGAGG+GGG | 0.485028 | 7.3:+2177116 | None:intergenic |
| CTCATAAACGGTTAATTGAT+GGG | 0.485762 | 7.3:-2179500 | MS.gene050474:CDS |
| TTCAATAAGCCATCCACAGC+AGG | 0.487643 | 7.3:+2179525 | None:intergenic |
| GTTCCTGCTCAAAAGGTTGG+TGG | 0.488563 | 7.3:-2183078 | MS.gene050474:CDS |
| ACAGCATCAGCGTACGATAG+AGG | 0.489668 | 7.3:+2176614 | None:intergenic |
| GGCTACAGCATGTCCTGGAT+TGG | 0.489729 | 7.3:+2175523 | None:intergenic |
| CCAGGACATGCTGTAGCCTA+TGG | 0.493986 | 7.3:-2175518 | MS.gene050474:CDS |
| TTCTTCTCTTCCACCTGCTG+TGG | 0.494945 | 7.3:-2179538 | MS.gene050474:CDS |
| TTCTTCTCAGGCTCAACGAT+CGG | 0.495988 | 7.3:+2183141 | None:intergenic |
| CATTGGAGTGCACAAGGCAG+TGG | 0.499275 | 7.3:-2177470 | MS.gene050474:CDS |
| CAGGGTAGGAATTGTATCCT+TGG | 0.499993 | 7.3:+2175576 | None:intergenic |
| GAAAAGGGGCTAAGTGAGAG+TGG | 0.501137 | 7.3:+2183554 | None:intergenic |
| AACAGCACAGCAATTGATAC+AGG | 0.502245 | 7.3:-2176462 | MS.gene050474:intron |
| CTTGGAGGTGGCATGAATTG+AGG | 0.503745 | 7.3:+2177173 | None:intergenic |
| CCTGAGGTGGACCCCATGAT+TGG | 0.504891 | 7.3:+2177240 | None:intergenic |
| TTGTGAGAACGAAGTGATGA+AGG | 0.506916 | 7.3:+2183594 | None:intergenic |
| AAGAAATGGCCGGGTTGGCC+TGG | 0.507487 | 7.3:-2183123 | MS.gene050474:CDS |
| GCGTCACCACCTTCCAATCC+AGG | 0.508103 | 7.3:-2175536 | MS.gene050474:CDS |
| CATCATGGTATATCCGCCTA+TGG | 0.508306 | 7.3:-2177092 | MS.gene050474:CDS |
| ATGCTCCTTCAGGTGTGGCT+GGG | 0.509317 | 7.3:-2179473 | MS.gene050474:CDS |
| CAGGGTCTCCCACCAAATGC+TGG | 0.510314 | 7.3:-2177221 | MS.gene050474:CDS |
| CTCCCACCAAATGCTGGTGG+AGG | 0.511292 | 7.3:-2177215 | MS.gene050474:CDS |
| GGGCTGTTTGTCCAATGGAG+GGG | 0.511453 | 7.3:+2177115 | None:intergenic |
| TATGGCGGAAGCTGCAGCAC+CGG | 0.517885 | 7.3:-2175630 | MS.gene050474:CDS |
| TACTCAGTCTGCACCTTCCA+TGG | 0.518367 | 7.3:-2177033 | MS.gene050474:CDS |
| TTATCAACTTGCCTTGGAGG+TGG | 0.522949 | 7.3:+2177161 | None:intergenic |
| CCATAGGCTACAGCATGTCC+TGG | 0.523583 | 7.3:+2175518 | None:intergenic |
| ACCACCACCCCACCAATCAT+GGG | 0.524462 | 7.3:-2177252 | MS.gene050474:CDS |
| AATTAAACTTCCTGCTTGTG+AGG | 0.525068 | 7.3:+2179422 | None:intergenic |
| AATGAAGAAGATGGAATCTA+GGG | 0.525306 | 7.3:+2183513 | None:intergenic |
| TGGGGCTGTTTGTCCAATGG+AGG | 0.525515 | 7.3:+2177113 | None:intergenic |
| CTGAGAAGAAATGGCCGGGT+TGG | 0.525773 | 7.3:-2183128 | MS.gene050474:CDS |
| TAGTAATTATCAACTTGCCT+TGG | 0.526071 | 7.3:+2177155 | None:intergenic |
| GGGTGCGAGAATGAAGAAGA+TGG | 0.528572 | 7.3:+2183504 | None:intergenic |
| GGAACAAAATGAGTCTGAAA+AGG | 0.528718 | 7.3:-2183175 | MS.gene050474:CDS |
| ATTTCAACTGTCATCTCCCC+AGG | 0.529708 | 7.3:+2176509 | None:intergenic |
| AGATGACAGTTGAAATCAGC+GGG | 0.541840 | 7.3:-2176502 | MS.gene050474:CDS |
| CATAGGCGGATATACCATGA+TGG | 0.542292 | 7.3:+2177093 | None:intergenic |
| TTCTGGCAGTGGAAATTCCA+TGG | 0.543536 | 7.3:-2183253 | MS.gene050474:intron |
| CCGGCGCAGCAACAAACAGG+TGG | 0.553534 | 7.3:-2175611 | MS.gene050474:CDS |
| ATAGTCAGAGTTCTGGGAGC+AGG | 0.562698 | 7.3:-2179351 | MS.gene050474:intron |
| GCATAGACAGAACTATGAGC+AGG | 0.562952 | 7.3:+2175557 | None:intergenic |
| ACCTTCCCAGCCACACCTGA+AGG | 0.563518 | 7.3:+2179468 | None:intergenic |
| CTCAATTCATGCCACCTCCA+AGG | 0.565069 | 7.3:-2177172 | MS.gene050474:CDS |
| TGTTTCTTGTATGGTAACAG+TGG | 0.565082 | 7.3:+2176541 | None:intergenic |
| TTCCTGCTCAAAAGGTTGGT+GGG | 0.565402 | 7.3:-2183077 | MS.gene050474:CDS |
| GAAAAGTACCTGTGTGACCA+TGG | 0.567170 | 7.3:+2177016 | None:intergenic |
| GGACCTCCACCAGCATTTGG+TGG | 0.567350 | 7.3:+2177212 | None:intergenic |
| TGAGGAGCAAGTCCAAATCC+AGG | 0.567540 | 7.3:+2177191 | None:intergenic |
| ACACTCTCACCAGGCCAACC+CGG | 0.568203 | 7.3:+2183114 | None:intergenic |
| GGCCTCCCGGAACTTCAGAA+CGG | 0.568253 | 7.3:-2182981 | MS.gene050474:CDS |
| TGAGCCTGAGAAGAAATGGC+CGG | 0.568727 | 7.3:-2183133 | MS.gene050474:CDS |
| TGATGAAGGATAATAGGTGG+TGG | 0.568994 | 7.3:+2183608 | None:intergenic |
| AAGGGGCTAAGTGAGAGTGG+AGG | 0.571507 | 7.3:+2183557 | None:intergenic |
| ATAGGCGGATATACCATGAT+GGG | 0.572279 | 7.3:+2177094 | None:intergenic |
| GAGCCTGAGAAGAAATGGCC+GGG | 0.573327 | 7.3:-2183132 | MS.gene050474:CDS |
| GGAAGGTGCAGACTGAGTAT+TGG | 0.573422 | 7.3:+2177037 | None:intergenic |
| TATTGAAGCATCTCTTCCAT+AGG | 0.574272 | 7.3:+2177076 | None:intergenic |
| CTCGTGTTAAGATTCTTGAT+GGG | 0.574443 | 7.3:-2183002 | MS.gene050474:CDS |
| ACAGCATGTCCTGGATTGGA+AGG | 0.577875 | 7.3:+2175527 | None:intergenic |
| AAGAAACAAGAGGAGTTCCT+GGG | 0.578584 | 7.3:-2176526 | MS.gene050474:CDS |
| TTGGTTCCTGCTCAAAAGGT+TGG | 0.581334 | 7.3:-2183081 | MS.gene050474:CDS |
| AGTAAATTACCTTGATTGCA+GGG | 0.581647 | 7.3:+2183459 | None:intergenic |
| CTAGTGCCAGCCTCACAAGC+AGG | 0.582418 | 7.3:-2179432 | MS.gene050474:CDS |
| AATAGGTGGTGGCATAACAT+TGG | 0.584612 | 7.3:+2183619 | None:intergenic |
| GGATCCCATTGGAGTGCACA+AGG | 0.586468 | 7.3:-2177476 | MS.gene050474:CDS |
| GAACTGGCATGTGCTCCACA+GGG | 0.586485 | 7.3:+2177276 | None:intergenic |
| TTGGACAAACAGCCCCATCA+TGG | 0.587088 | 7.3:-2177107 | MS.gene050474:CDS |
| GATGCTGTTATTGGAACAGC+CGG | 0.587215 | 7.3:-2176599 | MS.gene050474:CDS |
| AACCACCCTGTCATCTTGAA+GGG | 0.588607 | 7.3:+2177510 | None:intergenic |
| GTATCAGCTAAAGATGAGCC+TGG | 0.589213 | 7.3:-2179561 | MS.gene050474:CDS |
| GTTCTGATCAACCTCAGCCA+TGG | 0.592521 | 7.3:+2183236 | None:intergenic |
| TGCACCATAAACTGCACCAT+AGG | 0.596471 | 7.3:+2175502 | None:intergenic |
| TTGTATCCTTGGTCTGCAGG+AGG | 0.600150 | 7.3:+2175587 | None:intergenic |
| GGTGGACCCCATGATTGGTG+GGG | 0.600476 | 7.3:+2177245 | None:intergenic |
| AGCTATATCAGAAGAGCAAG+TGG | 0.600575 | 7.3:-2176566 | MS.gene050474:CDS |
| TGATGGGGCTGTTTGTCCAA+TGG | 0.602005 | 7.3:+2177110 | None:intergenic |
| GACCTCCACCAGCATTTGGT+GGG | 0.602365 | 7.3:+2177213 | None:intergenic |
| GGTGGGATAATTGGTCGGAA+AGG | 0.602653 | 7.3:-2183060 | MS.gene050474:CDS |
| GACAGAACTATGAGCAGGGT+AGG | 0.604594 | 7.3:+2175562 | None:intergenic |
| CAGTGGAAATTCCATGGCTG+AGG | 0.606695 | 7.3:-2183247 | MS.gene050474:CDS |
| CAATCATGGGGTCCACCTCA+GGG | 0.610026 | 7.3:-2177239 | MS.gene050474:CDS |
| GCTATATCAGAAGAGCAAGT+GGG | 0.610415 | 7.3:-2176565 | MS.gene050474:CDS |
| ACAACAGCAAATTGTTGAGA+CGG | 0.611449 | 7.3:-2183196 | MS.gene050474:CDS |
| AATAAGCCATCCACAGCAGG+TGG | 0.611934 | 7.3:+2179528 | None:intergenic |
| ACAAAATGAGTCTGAAAAGG+TGG | 0.617900 | 7.3:-2183172 | MS.gene050474:CDS |
| GGTCTCCCACCAAATGCTGG+TGG | 0.624009 | 7.3:-2177218 | MS.gene050474:CDS |
| TGCACCTTCCATGGTCACAC+AGG | 0.626823 | 7.3:-2177024 | MS.gene050474:intron |
| CAGGGTGGTTGAAGTAGTAG+GGG | 0.627870 | 7.3:-2177497 | MS.gene050474:CDS |
| TGAAGCATCTCTTCCATAGG+CGG | 0.628282 | 7.3:+2177079 | None:intergenic |
| ATTCTGAAAACACTCTCACC+AGG | 0.628905 | 7.3:+2183105 | None:intergenic |
| TGCCCTTCAAGATGACAGGG+TGG | 0.630655 | 7.3:-2177512 | MS.gene050474:CDS |
| GAAGTAGTAGGGGATCCCAT+TGG | 0.631279 | 7.3:-2177487 | MS.gene050474:CDS |
| AGTACCTGTGTGACCATGGA+AGG | 0.631574 | 7.3:+2177020 | None:intergenic |
| AGTTTAATTGGGAAACAAGG+AGG | 0.632206 | 7.3:-2179408 | MS.gene050474:CDS |
| GTTACCATACAAGAAACAAG+AGG | 0.636417 | 7.3:-2176536 | MS.gene050474:CDS |
| GGAAGTTTAATTGGGAAACA+AGG | 0.639460 | 7.3:-2179411 | MS.gene050474:CDS |
| AAGTGATGAAGGATAATAGG+TGG | 0.639762 | 7.3:+2183605 | None:intergenic |
| CTATATCAGAAGAGCAAGTG+GGG | 0.641360 | 7.3:-2176564 | MS.gene050474:CDS |
| GTTAGATGCTCCTTCAGGTG+TGG | 0.645046 | 7.3:-2179478 | MS.gene050474:CDS |
| GCAGGTGGAAGAGAAGAACC+AGG | 0.646569 | 7.3:+2179543 | None:intergenic |
| CGGCGCAGCAACAAACAGGT+GGG | 0.647966 | 7.3:-2175610 | MS.gene050474:CDS |
| AGGTTGGTGGGATAATTGGT+CGG | 0.649103 | 7.3:-2183065 | MS.gene050474:CDS |
| CCACCACCCCACCAATCATG+GGG | 0.649451 | 7.3:-2177251 | MS.gene050474:CDS |
| TTTGGTGGGAGACCCTGAGG+TGG | 0.656048 | 7.3:+2177227 | None:intergenic |
| GGTGGGCCTCCTGCAGACCA+AGG | 0.658048 | 7.3:-2175593 | MS.gene050474:CDS |
| GCATTTGGTGGGAGACCCTG+AGG | 0.663331 | 7.3:+2177224 | None:intergenic |
| CATAGACAGAACTATGAGCA+GGG | 0.665116 | 7.3:+2175558 | None:intergenic |
| TAGGCGGATATACCATGATG+GGG | 0.688165 | 7.3:+2177095 | None:intergenic |
| GCTGAGGTTGATCAGAACGT+AGG | 0.692033 | 7.3:-2183231 | MS.gene050474:CDS |
| TGAGTCTGAAAAGGTGGTTG+AGG | 0.692336 | 7.3:-2183166 | MS.gene050474:CDS |
| GCCCGTTCTGAAGTTCCGGG+AGG | 0.698554 | 7.3:+2182979 | None:intergenic |
| GCATGTCCTGGATTGGAAGG+TGG | 0.712815 | 7.3:+2175530 | None:intergenic |
| CTGGCATGTGCTCCACAGGG+TGG | 0.717080 | 7.3:+2177279 | None:intergenic |
| AGAAACAAGAGGAGTTCCTG+GGG | 0.720239 | 7.3:-2176525 | MS.gene050474:CDS |
| AATGGCTAATAACCACCCTG+TGG | 0.739150 | 7.3:-2177291 | MS.gene050474:CDS |
| GAGATGACAGTTGAAATCAG+CGG | 0.760601 | 7.3:-2176503 | MS.gene050474:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 2175484 | 2183656 | 2175484 | ID=MS.gene050474 |
| chr7.3 | mRNA | 2175484 | 2183656 | 2175484 | ID=MS.gene050474.t1;Parent=MS.gene050474 |
| chr7.3 | exon | 2183469 | 2183656 | 2183469 | ID=MS.gene050474.t1.exon1;Parent=MS.gene050474.t1 |
| chr7.3 | CDS | 2183469 | 2183656 | 2183469 | ID=cds.MS.gene050474.t1;Parent=MS.gene050474.t1 |
| chr7.3 | exon | 2182978 | 2183266 | 2182978 | ID=MS.gene050474.t1.exon2;Parent=MS.gene050474.t1 |
| chr7.3 | CDS | 2182978 | 2183266 | 2182978 | ID=cds.MS.gene050474.t1;Parent=MS.gene050474.t1 |
| chr7.3 | exon | 2179352 | 2179589 | 2179352 | ID=MS.gene050474.t1.exon3;Parent=MS.gene050474.t1 |
| chr7.3 | CDS | 2179352 | 2179589 | 2179352 | ID=cds.MS.gene050474.t1;Parent=MS.gene050474.t1 |
| chr7.3 | exon | 2177402 | 2177550 | 2177402 | ID=MS.gene050474.t1.exon4;Parent=MS.gene050474.t1 |
| chr7.3 | CDS | 2177402 | 2177550 | 2177402 | ID=cds.MS.gene050474.t1;Parent=MS.gene050474.t1 |
| chr7.3 | exon | 2177025 | 2177318 | 2177025 | ID=MS.gene050474.t1.exon5;Parent=MS.gene050474.t1 |
| chr7.3 | CDS | 2177025 | 2177318 | 2177025 | ID=cds.MS.gene050474.t1;Parent=MS.gene050474.t1 |
| chr7.3 | exon | 2176463 | 2176657 | 2176463 | ID=MS.gene050474.t1.exon6;Parent=MS.gene050474.t1 |
| chr7.3 | CDS | 2176463 | 2176657 | 2176463 | ID=cds.MS.gene050474.t1;Parent=MS.gene050474.t1 |
| chr7.3 | exon | 2175484 | 2175657 | 2175484 | ID=MS.gene050474.t1.exon7;Parent=MS.gene050474.t1 |
| chr7.3 | CDS | 2175484 | 2175657 | 2175484 | ID=cds.MS.gene050474.t1;Parent=MS.gene050474.t1 |
| Gene Sequence |
| Protein sequence |