Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050578.t1 | XP_003626470.1 | 97.3 | 222 | 6 | 0 | 1 | 222 | 5 | 226 | 9.60E-117 | 429.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050578.t1 | Q8VYF7 | 58.0 | 238 | 84 | 4 | 1 | 222 | 1 | 238 | 2.1e-67 | 256.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050578.t1 | G7L2W4 | 97.3 | 222 | 6 | 0 | 1 | 222 | 5 | 226 | 6.9e-117 | 429.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene050578.t1 | TF | Whirly |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050578 | MS.gene22868 | 0.940414 | 2.43E-100 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050578.t1 | MTR_7g116270 | 97.297 | 222 | 6 | 0 | 1 | 222 | 5 | 226 | 9.07e-163 | 448 |
| MS.gene050578.t1 | MTR_5g038560 | 39.894 | 188 | 109 | 2 | 37 | 222 | 76 | 261 | 3.52e-47 | 156 |
| MS.gene050578.t1 | MTR_8g468570 | 40.244 | 164 | 96 | 1 | 37 | 198 | 75 | 238 | 5.37e-47 | 156 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050578.t1 | AT1G71260 | 57.983 | 238 | 84 | 4 | 1 | 222 | 1 | 238 | 4.95e-91 | 267 |
| MS.gene050578.t1 | AT2G02740 | 42.408 | 191 | 100 | 4 | 39 | 222 | 81 | 268 | 1.03e-51 | 168 |
| MS.gene050578.t1 | AT1G14410 | 40.838 | 191 | 96 | 3 | 42 | 222 | 80 | 263 | 1.72e-51 | 167 |
Find 51 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTGCGTTGCCACACATTA+TGG | 0.228816 | 7.3:-1734544 | MS.gene050578:CDS |
| GCTTGCTTCCTTCATCTTCC+AGG | 0.275752 | 7.3:-1737482 | MS.gene050578:intron |
| TTGCCCTTGTAAACAGAATA+AGG | 0.288907 | 7.3:+1737185 | None:intergenic |
| AAAATTTGTGAGTTCATCTT+TGG | 0.301520 | 7.3:+1734471 | None:intergenic |
| AGGAACACTAAAATTCTCTT+TGG | 0.325050 | 7.3:+1735557 | None:intergenic |
| ATGAGTTTCATGCCTGCTAT+TGG | 0.341936 | 7.3:-1736834 | MS.gene050578:CDS |
| GAAAGAATTCACATGAATCT+TGG | 0.354145 | 7.3:+1735981 | None:intergenic |
| AAAGAATTCACATGAATCTT+GGG | 0.363397 | 7.3:+1735982 | None:intergenic |
| TGAGTTTCATGCCTGCTATT+GGG | 0.372914 | 7.3:-1736833 | MS.gene050578:CDS |
| GCAAACTCAGCAGTTGTAAC+AGG | 0.373789 | 7.3:+1735537 | None:intergenic |
| AGGCATGAAACTCATCATTA+TGG | 0.404570 | 7.3:+1736842 | None:intergenic |
| GTGAAACAGGAATCATCTAT+TGG | 0.407409 | 7.3:-1737381 | MS.gene050578:intron |
| TTTGCGTTGCCACACATTAT+GGG | 0.408601 | 7.3:-1734543 | MS.gene050578:CDS |
| AGCAGAATAGTTGTTATTTG+TGG | 0.411050 | 7.3:+1737328 | None:intergenic |
| TGCTCCTTATTCTGTTTACA+AGG | 0.424645 | 7.3:-1737189 | MS.gene050578:CDS |
| GTTGCCACACATTATGGGTT+GGG | 0.425766 | 7.3:-1734538 | MS.gene050578:CDS |
| AACCGACTTCAGTAGCTGAT+AGG | 0.440719 | 7.3:+1736023 | None:intergenic |
| CGTTGCCACACATTATGGGT+TGG | 0.443320 | 7.3:-1734539 | MS.gene050578:CDS |
| ATATACCTTGATTTCATTGA+GGG | 0.447907 | 7.3:+1735953 | None:intergenic |
| GTCGGTTCTTTGATAGCCAT+TGG | 0.458218 | 7.3:-1736007 | MS.gene050578:CDS |
| TTCTTATGCTGCAGTAATGC+TGG | 0.463315 | 7.3:-1735771 | MS.gene050578:intron |
| TTGGGGAGCGCAAATATGAC+TGG | 0.493872 | 7.3:-1736815 | MS.gene050578:CDS |
| AAATAACAACTATTCTGCTA+AGG | 0.494500 | 7.3:-1737324 | MS.gene050578:CDS |
| GCAGTAATGCTGGTCAAGTA+AGG | 0.498490 | 7.3:-1735761 | MS.gene050578:intron |
| GAGTTTCATGCCTGCTATTG+GGG | 0.513089 | 7.3:-1736832 | MS.gene050578:CDS |
| ATTGGAAGTTCTTTCCGCTA+GGG | 0.516317 | 7.3:-1737363 | MS.gene050578:CDS |
| ATGACCCCTCAATGAAATCA+AGG | 0.516531 | 7.3:-1735958 | MS.gene050578:intron |
| TTGAAAGCTGACTGTCCCAC+TGG | 0.516551 | 7.3:+1734494 | None:intergenic |
| AATATACCTTGATTTCATTG+AGG | 0.524866 | 7.3:+1735952 | None:intergenic |
| GCCCTATCAGCTACTGAAGT+CGG | 0.527679 | 7.3:-1736025 | MS.gene050578:CDS |
| ACCGACTTCAGTAGCTGATA+GGG | 0.538316 | 7.3:+1736024 | None:intergenic |
| AGGGAGTACCTGGAAGATGA+AGG | 0.540073 | 7.3:+1737474 | None:intergenic |
| TATTTGCGCTCCCCAATAGC+AGG | 0.541622 | 7.3:+1736822 | None:intergenic |
| TATTGGAAGTTCTTTCCGCT+AGG | 0.545874 | 7.3:-1737364 | MS.gene050578:CDS |
| ACAAAGTAGCCATTGCTATG+AGG | 0.558527 | 7.3:+1735720 | None:intergenic |
| ACATGAATCTTGGGGACCAA+TGG | 0.561311 | 7.3:+1735991 | None:intergenic |
| AATAACAACTATTCTGCTAA+GGG | 0.563737 | 7.3:-1737323 | MS.gene050578:intron |
| TCAATTAAGCCTCATAGCAA+TGG | 0.569726 | 7.3:-1735729 | MS.gene050578:CDS |
| ACATCCAACTTAGTAAAAGT+AGG | 0.596084 | 7.3:+1737134 | None:intergenic |
| GCTCCTTATTCTGTTTACAA+GGG | 0.608711 | 7.3:-1737188 | MS.gene050578:CDS |
| ATTCTCTTTGGTATTTAACA+CGG | 0.610530 | 7.3:+1735569 | None:intergenic |
| TATACCTTGATTTCATTGAG+GGG | 0.613978 | 7.3:+1735954 | None:intergenic |
| TAACTAATCAGCAGTCCAGT+GGG | 0.621978 | 7.3:-1734509 | MS.gene050578:CDS |
| AAGAATTCACATGAATCTTG+GGG | 0.637953 | 7.3:+1735983 | None:intergenic |
| AAAGAGGCATACACTGCAAG+CGG | 0.640513 | 7.3:+1735503 | None:intergenic |
| TGGGGAGCGCAAATATGACT+GGG | 0.642764 | 7.3:-1736814 | MS.gene050578:CDS |
| CTAACTAATCAGCAGTCCAG+TGG | 0.653328 | 7.3:-1734510 | MS.gene050578:CDS |
| TTAGTAAAAGTAGGAAGACA+AGG | 0.653333 | 7.3:+1737143 | None:intergenic |
| CGATCCCAACCCATAATGTG+TGG | 0.655749 | 7.3:+1734534 | None:intergenic |
| GCTCTTGTTGTTGATCGTCG+CGG | 0.693088 | 7.3:-1736867 | MS.gene050578:CDS |
| GGCAGTAGAGAAATCCCTAG+CGG | 0.738730 | 7.3:+1737349 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACATTGTTTAAATACTA+TGG | - | chr7.3:1735134-1735153 | MS.gene050578:intron | 15.0% |
| !! | AATGATAATAAAAGAAAGTT+TGG | + | chr7.3:1736504-1736523 | None:intergenic | 15.0% |
| !! | GTAAATTGTAATATTTAAGA+AGG | - | chr7.3:1737396-1737415 | MS.gene050578:intron | 15.0% |
| !!! | TTTAAATACATTCCTTTTTA+CGG | - | chr7.3:1734631-1734650 | MS.gene050578:intron | 15.0% |
| !! | AAGAAAGAAGAAAGAATAAA+AGG | + | chr7.3:1734958-1734977 | None:intergenic | 20.0% |
| !! | AGGAATGTATTTAAATGATT+AGG | + | chr7.3:1734626-1734645 | None:intergenic | 20.0% |
| !! | TAAAAATGTTGAATCAAGTT+TGG | + | chr7.3:1736652-1736671 | None:intergenic | 20.0% |
| !! | TACTATTATTATTGTGAAAC+AGG | - | chr7.3:1734328-1734347 | MS.gene050578:intron | 20.0% |
| !! | TCAACAAACAAAAAAACTAA+TGG | + | chr7.3:1735891-1735910 | None:intergenic | 20.0% |
| !! | TCTCTATTACAAAATAAGAA+AGG | + | chr7.3:1735534-1735553 | None:intergenic | 20.0% |
| !!! | ATTTTTATGCTTACATTGAT+TGG | - | chr7.3:1734463-1734482 | MS.gene050578:CDS | 20.0% |
| !!! | TTTTAATACATTGGGTATTT+GGG | - | chr7.3:1736062-1736081 | MS.gene050578:intron | 20.0% |
| ! | AAAATTTGTGAGTTCATCTT+TGG | + | chr7.3:1737254-1737273 | None:intergenic | 25.0% |
| ! | AAAGAATTCACATGAATCTT+GGG | + | chr7.3:1735743-1735762 | None:intergenic | 25.0% |
| ! | AAATAACAACTATTCTGCTA+AGG | - | chr7.3:1734398-1734417 | MS.gene050578:intron | 25.0% |
| ! | AAGCAGAAAAAGAATAAACA+AGG | + | chr7.3:1737481-1737500 | None:intergenic | 25.0% |
| ! | AATAACAACTATTCTGCTAA+GGG | - | chr7.3:1734399-1734418 | MS.gene050578:intron | 25.0% |
| ! | AATATACCTTGATTTCATTG+AGG | + | chr7.3:1735773-1735792 | None:intergenic | 25.0% |
| ! | AGAATAACATATTGTCAACT+TGG | - | chr7.3:1735551-1735570 | MS.gene050578:CDS | 25.0% |
| ! | ATAAGTTGTTTATCCAAACA+TGG | - | chr7.3:1734781-1734800 | MS.gene050578:intron | 25.0% |
| ! | ATATACCTTGATTTCATTGA+GGG | + | chr7.3:1735772-1735791 | None:intergenic | 25.0% |
| ! | ATATTATATGCTTCACTTTC+AGG | - | chr7.3:1734489-1734508 | MS.gene050578:CDS | 25.0% |
| ! | ATTACAAGTTTACAAAGTAG+TGG | - | chr7.3:1735162-1735181 | MS.gene050578:intron | 25.0% |
| ! | ATTCTCTTTGGTATTTAACA+CGG | + | chr7.3:1736156-1736175 | None:intergenic | 25.0% |
| ! | CAAATACCCAATGTATTAAA+AGG | + | chr7.3:1736063-1736082 | None:intergenic | 25.0% |
| ! | GAATAAGCTATTTGTATAAG+CGG | + | chr7.3:1734746-1734765 | None:intergenic | 25.0% |
| ! | GTCACTAATTAACTTTCAAA+TGG | + | chr7.3:1735921-1735940 | None:intergenic | 25.0% |
| ! | TAAAAGTTGAAAACATGAAG+CGG | + | chr7.3:1735507-1735526 | None:intergenic | 25.0% |
| ! | TACTGTTGGAAAATATGAAA+TGG | - | chr7.3:1737298-1737317 | MS.gene050578:intron | 25.0% |
| ! | TCTCTCATGAGATAATTAAT+TGG | + | chr7.3:1735826-1735845 | None:intergenic | 25.0% |
| ! | TGTCTTAAATAACAATGAAG+TGG | - | chr7.3:1736324-1736343 | MS.gene050578:intron | 25.0% |
| ! | TTCAAAAATTGCAGTTAACT+AGG | + | chr7.3:1736907-1736926 | None:intergenic | 25.0% |
| !! | ATTAAAAGCACAAGTATGAT+TGG | + | chr7.3:1737026-1737045 | None:intergenic | 25.0% |
| !! | CTTTTAATACATTGGGTATT+TGG | - | chr7.3:1736061-1736080 | MS.gene050578:intron | 25.0% |
| !! | TGGATTGATAATACACAAAA+TGG | + | chr7.3:1737346-1737365 | None:intergenic | 25.0% |
| !! | TGTTCACCTTTTAATACATT+GGG | - | chr7.3:1736054-1736073 | MS.gene050578:intron | 25.0% |
| !! | TTAAAAGCACAAGTATGATT+GGG | + | chr7.3:1737025-1737044 | None:intergenic | 25.0% |
| !! | TTACACTTTTATTGTCATTC+CGG | - | chr7.3:1736704-1736723 | MS.gene050578:intron | 25.0% |
| !! | TTGTTCACCTTTTAATACAT+TGG | - | chr7.3:1736053-1736072 | MS.gene050578:intron | 25.0% |
| !!! | TTAAGAGCATTTTATTGTCT+CGG | - | chr7.3:1735437-1735456 | MS.gene050578:intron | 25.0% |
| !!! | TTTTGTTTTCAGGTAATGAT+TGG | - | chr7.3:1736766-1736785 | MS.gene050578:intron | 25.0% |
| AACTTCCGAAACAATGTATT+AGG | + | chr7.3:1735577-1735596 | None:intergenic | 30.0% | |
| AAGAATTCACATGAATCTTG+GGG | + | chr7.3:1735742-1735761 | None:intergenic | 30.0% | |
| AAGAGTTTAAAGAGACATGA+GGG | + | chr7.3:1735419-1735438 | None:intergenic | 30.0% | |
| AAGTATGATTCCATAATGTG+TGG | + | chr7.3:1737103-1737122 | None:intergenic | 30.0% | |
| AAGTTCTACTTGATACTTGT+AGG | - | chr7.3:1735592-1735611 | MS.gene050578:intron | 30.0% | |
| AATTGTGTTTACGTCTATTG+TGG | - | chr7.3:1735066-1735085 | MS.gene050578:intron | 30.0% | |
| ACATCCAACTTAGTAAAAGT+AGG | + | chr7.3:1734591-1734610 | None:intergenic | 30.0% | |
| AGGAACACTAAAATTCTCTT+TGG | + | chr7.3:1736168-1736187 | None:intergenic | 30.0% | |
| ATCTCATGAGAGAACTATAT+AGG | - | chr7.3:1735833-1735852 | MS.gene050578:intron | 30.0% | |
| CCTGAAAACAAAACAATAGT+CGG | + | chr7.3:1736759-1736778 | None:intergenic | 30.0% | |
| GAAAGAATGAAAGAGATTGA+AGG | + | chr7.3:1734274-1734293 | None:intergenic | 30.0% | |
| GAAAGAATTCACATGAATCT+TGG | + | chr7.3:1735744-1735763 | None:intergenic | 30.0% | |
| GTATATTTCACGATTCTCTA+GGG | - | chr7.3:1735786-1735805 | MS.gene050578:intron | 30.0% | |
| GTATTATCAATCCAAAGACT+AGG | - | chr7.3:1737352-1737371 | MS.gene050578:CDS | 30.0% | |
| GTCCAGAATCAGATAAAATA+GGG | + | chr7.3:1737003-1737022 | None:intergenic | 30.0% | |
| GTGTAACGTAATGACATAAT+GGG | + | chr7.3:1736267-1736286 | None:intergenic | 30.0% | |
| TAAGAGTTTAAAGAGACATG+AGG | + | chr7.3:1735420-1735439 | None:intergenic | 30.0% | |
| TACACCTTTCACAAGTTATA+TGG | - | chr7.3:1736282-1736301 | MS.gene050578:intron | 30.0% | |
| TATACCTTGATTTCATTGAG+GGG | + | chr7.3:1735771-1735790 | None:intergenic | 30.0% | |
| TCCAGAATCAGATAAAATAG+GGG | + | chr7.3:1737002-1737021 | None:intergenic | 30.0% | |
| TTAAATACTACAGTTGTAGC+AGG | - | chr7.3:1735251-1735270 | MS.gene050578:intron | 30.0% | |
| TTAGTAAAAGTAGGAAGACA+AGG | + | chr7.3:1734582-1734601 | None:intergenic | 30.0% | |
| ! | AAATACATTCCTTTTTACGG+TGG | - | chr7.3:1734634-1734653 | MS.gene050578:intron | 30.0% |
| ! | ACAAATTTTAGACTTGGAGT+GGG | - | chr7.3:1737265-1737284 | MS.gene050578:intron | 30.0% |
| ! | ATCATTGTTCTTTCTAGCAT+TGG | - | chr7.3:1736366-1736385 | MS.gene050578:intron | 30.0% |
| ! | ATTTCCATTTGTTACAGTCT+GGG | - | chr7.3:1734832-1734851 | MS.gene050578:intron | 30.0% |
| ! | GAACTCACAAATTTTAGACT+TGG | - | chr7.3:1737259-1737278 | MS.gene050578:intron | 30.0% |
| !! | AGCAGAATAGTTGTTATTTG+TGG | + | chr7.3:1734397-1734416 | None:intergenic | 30.0% |
| !! | TCTTCCTACTTTTACTAAGT+TGG | - | chr7.3:1734584-1734603 | MS.gene050578:intron | 30.0% |
| !! | TTTCTGCTTTTGTTTACTTC+AGG | - | chr7.3:1737492-1737511 | MS.gene050578:CDS | 30.0% |
| !!! | TAAGAGCATTTTATTGTCTC+GGG | - | chr7.3:1735438-1735457 | MS.gene050578:intron | 30.0% |
| AAAAACCAACCACCGTAAAA+AGG | + | chr7.3:1734646-1734665 | None:intergenic | 35.0% | |
| AAGAGGGAGACAAAATCATA+AGG | + | chr7.3:1736115-1736134 | None:intergenic | 35.0% | |
| AATCAGATAAAATAGGGGGT+GGG | + | chr7.3:1736997-1737016 | None:intergenic | 35.0% | |
| AGAATGAAAGAGATTGAAGG+AGG | + | chr7.3:1734271-1734290 | None:intergenic | 35.0% | |
| AGACATGAAAAGCAGAAACT+AGG | + | chr7.3:1736309-1736328 | None:intergenic | 35.0% | |
| AGAGTTTAAAGAGACATGAG+GGG | + | chr7.3:1735418-1735437 | None:intergenic | 35.0% | |
| AGGCATGAAACTCATCATTA+TGG | + | chr7.3:1734883-1734902 | None:intergenic | 35.0% | |
| CATATACGCGAGTTAATCAT+AGG | + | chr7.3:1736826-1736845 | None:intergenic | 35.0% | |
| CCAGAATCAGATAAAATAGG+GGG | + | chr7.3:1737001-1737020 | None:intergenic | 35.0% | |
| CGAAGATTGATCATGAAGTT+CGG | - | chr7.3:1735041-1735060 | MS.gene050578:intron | 35.0% | |
| CTTGGCCTAATACATTGTTT+CGG | - | chr7.3:1735569-1735588 | MS.gene050578:CDS | 35.0% | |
| GAATGAAAGAGATTGAAGGA+GGG | + | chr7.3:1734270-1734289 | None:intergenic | 35.0% | |
| GCTCCTTATTCTGTTTACAA+GGG | - | chr7.3:1734534-1734553 | MS.gene050578:CDS | 35.0% | |
| GGTATATTTCACGATTCTCT+AGG | - | chr7.3:1735785-1735804 | MS.gene050578:intron | 35.0% | |
| GGTCCAGAATCAGATAAAAT+AGG | + | chr7.3:1737004-1737023 | None:intergenic | 35.0% | |
| GGTGTAACGTAATGACATAA+TGG | + | chr7.3:1736268-1736287 | None:intergenic | 35.0% | |
| GTGAAACAGGAATCATCTAT+TGG | - | chr7.3:1734341-1734360 | MS.gene050578:intron | 35.0% | |
| TATCAATCCAAAGACTAGGA+TGG | - | chr7.3:1737356-1737375 | MS.gene050578:CDS | 35.0% | |
| TATCTACTCGTGAAACTCAT+TGG | - | chr7.3:1734696-1734715 | MS.gene050578:intron | 35.0% | |
| TCAATTAAGCCTCATAGCAA+TGG | - | chr7.3:1735993-1736012 | MS.gene050578:CDS | 35.0% | |
| TGAGAAACTAAGCAGAAAAG+AGG | + | chr7.3:1736238-1736257 | None:intergenic | 35.0% | |
| TGCTCCTTATTCTGTTTACA+AGG | - | chr7.3:1734533-1734552 | MS.gene050578:CDS | 35.0% | |
| TTAACAACAGCTGTCAAAGA+GGG | + | chr7.3:1736131-1736150 | None:intergenic | 35.0% | |
| TTCTACTTGATACTTGTAGG+AGG | - | chr7.3:1735595-1735614 | MS.gene050578:intron | 35.0% | |
| TTGCCCTTGTAAACAGAATA+AGG | + | chr7.3:1734540-1734559 | None:intergenic | 35.0% | |
| ! | ACTGCAATTTTTGAATGCGT+TGG | - | chr7.3:1736912-1736931 | MS.gene050578:intron | 35.0% |
| ! | AGGACCATATAACTTGTGAA+AGG | + | chr7.3:1736289-1736308 | None:intergenic | 35.0% |
| ! | CACAAATTTTAGACTTGGAG+TGG | - | chr7.3:1737264-1737283 | MS.gene050578:intron | 35.0% |
| ! | CAGATTAGTTAGACCATGTT+TGG | + | chr7.3:1734797-1734816 | None:intergenic | 35.0% |
| ! | CATTTCCATTTGTTACAGTC+TGG | - | chr7.3:1734831-1734850 | MS.gene050578:intron | 35.0% |
| ! | GAGAAAAGATCTGTTGACTA+TGG | + | chr7.3:1735396-1735415 | None:intergenic | 35.0% |
| ! | TTTAAGAAGGAAGCATGAGA+AGG | - | chr7.3:1737409-1737428 | MS.gene050578:intron | 35.0% |
| ! | TTTCCATTTGTTACAGTCTG+GGG | - | chr7.3:1734833-1734852 | MS.gene050578:intron | 35.0% |
| ! | TTTTATTGTCATTCCGGAAC+TGG | - | chr7.3:1736710-1736729 | MS.gene050578:intron | 35.0% |
| !! | TCTCTAGGGTTAGTAATTGA+TGG | - | chr7.3:1735800-1735819 | MS.gene050578:intron | 35.0% |
| !! | TGTTCTTTCTAGCATTGGTA+GGG | - | chr7.3:1736371-1736390 | MS.gene050578:intron | 35.0% |
| !! | TTGTTCTTTCTAGCATTGGT+AGG | - | chr7.3:1736370-1736389 | MS.gene050578:intron | 35.0% |
| !!! | CCGACTATTGTTTTGTTTTC+AGG | - | chr7.3:1736756-1736775 | MS.gene050578:intron | 35.0% |
| !!! | GTTGGTTTTTAGGGTTTGTT+TGG | - | chr7.3:1734656-1734675 | MS.gene050578:intron | 35.0% |
| !!! | TTTACGGTGGTTGGTTTTTA+GGG | - | chr7.3:1734647-1734666 | MS.gene050578:intron | 35.0% |
| !!! | TTTTACGGTGGTTGGTTTTT+AGG | - | chr7.3:1734646-1734665 | MS.gene050578:intron | 35.0% |
| ACAAAGTAGCCATTGCTATG+AGG | + | chr7.3:1736005-1736024 | None:intergenic | 40.0% | |
| ACCAGCGAAGTTAAAAAACC+AGG | + | chr7.3:1736948-1736967 | None:intergenic | 40.0% | |
| ACTCGCGTATATGAAGTTTC+AGG | - | chr7.3:1736833-1736852 | MS.gene050578:CDS | 40.0% | |
| ATCAGATAAAATAGGGGGTG+GGG | + | chr7.3:1736996-1737015 | None:intergenic | 40.0% | |
| ATGACCCCTCAATGAAATCA+AGG | - | chr7.3:1735764-1735783 | MS.gene050578:intron | 40.0% | |
| ATGAGTTTCATGCCTGCTAT+TGG | - | chr7.3:1734888-1734907 | MS.gene050578:intron | 40.0% | |
| ATTGGAAGTTCTTTCCGCTA+GGG | - | chr7.3:1734359-1734378 | MS.gene050578:intron | 40.0% | |
| CACAATTGACAGAACTCTCA+TGG | + | chr7.3:1735211-1735230 | None:intergenic | 40.0% | |
| CCAGCGAAGTTAAAAAACCA+GGG | + | chr7.3:1736947-1736966 | None:intergenic | 40.0% | |
| CTACTTTGTCTCTCTGTGTA+AGG | - | chr7.3:1736016-1736035 | MS.gene050578:CDS | 40.0% | |
| GAATCAGATAAAATAGGGGG+TGG | + | chr7.3:1736998-1737017 | None:intergenic | 40.0% | |
| GTTAACAACAGCTGTCAAAG+AGG | + | chr7.3:1736132-1736151 | None:intergenic | 40.0% | |
| TAACTAATCAGCAGTCCAGT+GGG | - | chr7.3:1737213-1737232 | MS.gene050578:CDS | 40.0% | |
| TATTGGAAGTTCTTTCCGCT+AGG | - | chr7.3:1734358-1734377 | MS.gene050578:intron | 40.0% | |
| TGAGTTTCATGCCTGCTATT+GGG | - | chr7.3:1734889-1734908 | MS.gene050578:intron | 40.0% | |
| TGCTAAATGGTACGTACACT+AGG | + | chr7.3:1736426-1736445 | None:intergenic | 40.0% | |
| TGGAATTGACAGCACAAAGA+AGG | + | chr7.3:1737326-1737345 | None:intergenic | 40.0% | |
| TGGGAAAAGTGAGTTACTGT+TGG | - | chr7.3:1737284-1737303 | MS.gene050578:intron | 40.0% | |
| TTCTTATGCTGCAGTAATGC+TGG | - | chr7.3:1735951-1735970 | MS.gene050578:intron | 40.0% | |
| TTTGCGTTGCCACACATTAT+GGG | - | chr7.3:1737091-1737110 | MS.gene050578:intron | 40.0% | |
| ! | ACATTCCTTTTTACGGTGGT+TGG | - | chr7.3:1734638-1734657 | MS.gene050578:intron | 40.0% |
| ! | CCCCCTATTTTATCTGATTC+TGG | - | chr7.3:1736998-1737017 | MS.gene050578:intron | 40.0% |
| ACAAGTCCTGCGTTGCTAAA+TGG | + | chr7.3:1736439-1736458 | None:intergenic | 45.0% | |
| ACATGAATCTTGGGGACCAA+TGG | + | chr7.3:1735734-1735753 | None:intergenic | 45.0% | |
| AGTGTACCATTTAGCAACGC+AGG | - | chr7.3:1736578-1736597 | MS.gene050578:intron | 45.0% | |
| CAGGACTTGTCATGCAACAT+TGG | - | chr7.3:1736449-1736468 | MS.gene050578:intron | 45.0% | |
| CCAAAGACTAGGATGGTATG+TGG | - | chr7.3:1737363-1737382 | MS.gene050578:CDS | 45.0% | |
| CTAACTAATCAGCAGTCCAG+TGG | - | chr7.3:1737212-1737231 | MS.gene050578:CDS | 45.0% | |
| GAGTTTCATGCCTGCTATTG+GGG | - | chr7.3:1734890-1734909 | MS.gene050578:intron | 45.0% | |
| GCAAACTCAGCAGTTGTAAC+AGG | + | chr7.3:1736188-1736207 | None:intergenic | 45.0% | |
| GCAGTAATGCTGGTCAAGTA+AGG | - | chr7.3:1735961-1735980 | MS.gene050578:CDS | 45.0% | |
| GCGTTGCTAAATGGTACACT+AGG | + | chr7.3:1736578-1736597 | None:intergenic | 45.0% | |
| GGACTATGCTATGCTCGTTT+AGG | - | chr7.3:1735183-1735202 | MS.gene050578:intron | 45.0% | |
| GTTGCCACACATTATGGGTT+GGG | - | chr7.3:1737184-1737203 | MS.gene050578:CDS | 45.0% | |
| GTTTGCGTTGCCACACATTA+TGG | - | chr7.3:1737090-1737109 | MS.gene050578:intron | 45.0% | |
| TACGTACCATTTAGCAACGC+AGG | - | chr7.3:1736430-1736449 | MS.gene050578:intron | 45.0% | |
| TATGCCATGTCTGGTCAAGT+TGG | - | chr7.3:1736733-1736752 | MS.gene050578:intron | 45.0% | |
| ! | AAAGAGGCATACACTGCAAG+CGG | + | chr7.3:1736222-1736241 | None:intergenic | 45.0% |
| ! | AACCGACTTCAGTAGCTGAT+AGG | + | chr7.3:1735702-1735721 | None:intergenic | 45.0% |
| ! | ACCGACTTCAGTAGCTGATA+GGG | + | chr7.3:1735701-1735720 | None:intergenic | 45.0% |
| ! | CCACATACCATCCTAGTCTT+TGG | + | chr7.3:1737366-1737385 | None:intergenic | 45.0% |
| ! | GTCGGTTCTTTGATAGCCAT+TGG | - | chr7.3:1735715-1735734 | MS.gene050578:CDS | 45.0% |
| !! | TCTTTCTAGCATTGGTAGGG+AGG | - | chr7.3:1736374-1736393 | MS.gene050578:intron | 45.0% |
| !!! | CCCTGGTTTTTTAACTTCGC+TGG | - | chr7.3:1736944-1736963 | MS.gene050578:intron | 45.0% |
| CAGACATGGCATACCAGTTC+CGG | + | chr7.3:1736726-1736745 | None:intergenic | 50.0% | |
| CGATCCCAACCCATAATGTG+TGG | + | chr7.3:1737191-1737210 | None:intergenic | 50.0% | |
| CGTTGCCACACATTATGGGT+TGG | - | chr7.3:1737183-1737202 | MS.gene050578:CDS | 50.0% | |
| GAGCCCCAGACTGTAACAAA+TGG | + | chr7.3:1734839-1734858 | None:intergenic | 50.0% | |
| GCCCTATCAGCTACTGAAGT+CGG | - | chr7.3:1735697-1735716 | MS.gene050578:intron | 50.0% | |
| GCTTGCTTCCTTCATCTTCC+AGG | - | chr7.3:1734240-1734259 | MS.gene050578:intron | 50.0% | |
| GGCAGTAGAGAAATCCCTAG+CGG | + | chr7.3:1734376-1734395 | None:intergenic | 50.0% | |
| TATTTGCGCTCCCCAATAGC+AGG | + | chr7.3:1734903-1734922 | None:intergenic | 50.0% | |
| TGTATCGTAGCAGAGCGAGT+GGG | + | chr7.3:1735296-1735315 | None:intergenic | 50.0% | |
| TTGAAAGCTGACTGTCCCAC+TGG | + | chr7.3:1737231-1737250 | None:intergenic | 50.0% | |
| ! | TGCGTTGGTCTGTTATTCCC+TGG | - | chr7.3:1736927-1736946 | MS.gene050578:intron | 50.0% |
| ! | TGGGGAGCGCAAATATGACT+GGG | - | chr7.3:1734908-1734927 | MS.gene050578:intron | 50.0% |
| ! | TTGGGGAGCGCAAATATGAC+TGG | - | chr7.3:1734907-1734926 | MS.gene050578:intron | 50.0% |
| !! | AGATTGAAGGAGGGAGTACC+TGG | + | chr7.3:1734261-1734280 | None:intergenic | 50.0% |
| !! | AGGGAGTACCTGGAAGATGA+AGG | + | chr7.3:1734251-1734270 | None:intergenic | 50.0% |
| !! | GCTCTTGTTGTTGATCGTCG+CGG | - | chr7.3:1734855-1734874 | MS.gene050578:intron | 50.0% |
| CGGAACTGGTATGCCATGTC+TGG | - | chr7.3:1736724-1736743 | MS.gene050578:intron | 55.0% | |
| GTGTATCGTAGCAGAGCGAG+TGG | + | chr7.3:1735297-1735316 | None:intergenic | 55.0% | |
| TCGGCCAACTTGACCAGACA+TGG | + | chr7.3:1736740-1736759 | None:intergenic | 55.0% | |
| ! | ACCACGCAAGCAAGCTTGCT+GGG | + | chr7.3:1735469-1735488 | None:intergenic | 55.0% |
| GACCACGCAAGCAAGCTTGC+TGG | + | chr7.3:1735470-1735489 | None:intergenic | 60.0% | |
| ! | GCAAGCTTGCTTGCGTGGTC+AGG | - | chr7.3:1735470-1735489 | MS.gene050578:intron | 60.0% |
| ! | GCCCAGCAAGCTTGCTTGCG+TGG | - | chr7.3:1735465-1735484 | MS.gene050578:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 1734224 | 1737520 | 1734224 | ID=MS.gene050578 |
| chr7.3 | mRNA | 1734224 | 1737520 | 1734224 | ID=MS.gene050578.t1;Parent=MS.gene050578 |
| chr7.3 | exon | 1737483 | 1737520 | 1737483 | ID=MS.gene050578.t1.exon1;Parent=MS.gene050578.t1 |
| chr7.3 | CDS | 1737483 | 1737520 | 1737483 | ID=cds.MS.gene050578.t1;Parent=MS.gene050578.t1 |
| chr7.3 | exon | 1737324 | 1737394 | 1737324 | ID=MS.gene050578.t1.exon2;Parent=MS.gene050578.t1 |
| chr7.3 | CDS | 1737324 | 1737394 | 1737324 | ID=cds.MS.gene050578.t1;Parent=MS.gene050578.t1 |
| chr7.3 | exon | 1737136 | 1737233 | 1737136 | ID=MS.gene050578.t1.exon3;Parent=MS.gene050578.t1 |
| chr7.3 | CDS | 1737136 | 1737233 | 1737136 | ID=cds.MS.gene050578.t1;Parent=MS.gene050578.t1 |
| chr7.3 | exon | 1736803 | 1736895 | 1736803 | ID=MS.gene050578.t1.exon4;Parent=MS.gene050578.t1 |
| chr7.3 | CDS | 1736803 | 1736895 | 1736803 | ID=cds.MS.gene050578.t1;Parent=MS.gene050578.t1 |
| chr7.3 | exon | 1735959 | 1736053 | 1735959 | ID=MS.gene050578.t1.exon5;Parent=MS.gene050578.t1 |
| chr7.3 | CDS | 1735959 | 1736053 | 1735959 | ID=cds.MS.gene050578.t1;Parent=MS.gene050578.t1 |
| chr7.3 | exon | 1735712 | 1735779 | 1735712 | ID=MS.gene050578.t1.exon6;Parent=MS.gene050578.t1 |
| chr7.3 | CDS | 1735712 | 1735779 | 1735712 | ID=cds.MS.gene050578.t1;Parent=MS.gene050578.t1 |
| chr7.3 | exon | 1735515 | 1735603 | 1735515 | ID=MS.gene050578.t1.exon7;Parent=MS.gene050578.t1 |
| chr7.3 | CDS | 1735515 | 1735603 | 1735515 | ID=cds.MS.gene050578.t1;Parent=MS.gene050578.t1 |
| chr7.3 | exon | 1734453 | 1734565 | 1734453 | ID=MS.gene050578.t1.exon8;Parent=MS.gene050578.t1 |
| chr7.3 | CDS | 1734453 | 1734565 | 1734453 | ID=cds.MS.gene050578.t1;Parent=MS.gene050578.t1 |
| chr7.3 | exon | 1734224 | 1734230 | 1734224 | ID=MS.gene050578.t1.exon9;Parent=MS.gene050578.t1 |
| chr7.3 | CDS | 1734224 | 1734230 | 1734224 | ID=cds.MS.gene050578.t1;Parent=MS.gene050578.t1 |
| Gene Sequence |
| Protein sequence |
