Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22868.t1 | XP_003626470.1 | 97.3 | 222 | 6 | 0 | 1 | 222 | 5 | 226 | 9.60E-117 | 429.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22868.t1 | Q8VYF7 | 58.0 | 238 | 84 | 4 | 1 | 222 | 1 | 238 | 2.1e-67 | 256.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22868.t1 | G7L2W4 | 97.3 | 222 | 6 | 0 | 1 | 222 | 5 | 226 | 6.9e-117 | 429.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene22868.t1 | TF | Whirly |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050578 | MS.gene22868 | 0.940414 | 2.43E-100 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22868.t1 | MTR_7g116270 | 97.297 | 222 | 6 | 0 | 1 | 222 | 5 | 226 | 9.07e-163 | 448 |
| MS.gene22868.t1 | MTR_5g038560 | 39.894 | 188 | 109 | 2 | 37 | 222 | 76 | 261 | 3.52e-47 | 156 |
| MS.gene22868.t1 | MTR_8g468570 | 40.244 | 164 | 96 | 1 | 37 | 198 | 75 | 238 | 5.37e-47 | 156 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22868.t1 | AT1G71260 | 57.983 | 238 | 84 | 4 | 1 | 222 | 1 | 238 | 4.95e-91 | 267 |
| MS.gene22868.t1 | AT2G02740 | 42.408 | 191 | 100 | 4 | 39 | 222 | 81 | 268 | 1.03e-51 | 168 |
| MS.gene22868.t1 | AT1G14410 | 40.838 | 191 | 96 | 3 | 42 | 222 | 80 | 263 | 1.72e-51 | 167 |
Find 50 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTGCGTTGCCACACATTA+TGG | 0.228816 | 7.4:-1884393 | MS.gene22868:CDS |
| GCTTGCTTCCTTCATCTTCC+AGG | 0.275752 | 7.4:-1887116 | MS.gene22868:intron |
| TTGCCCTTGTAAACAGAATA+AGG | 0.288907 | 7.4:+1886819 | None:intergenic |
| AAAATTTGTGAGTTCATCTT+TGG | 0.301520 | 7.4:+1884320 | None:intergenic |
| AGGAACACTAAAATTCTCTT+TGG | 0.325050 | 7.4:+1885166 | None:intergenic |
| ATGAGTTTCATGCCTGCTAT+TGG | 0.341936 | 7.4:-1886443 | MS.gene22868:CDS |
| GAAAGAATTCACATGAATCT+TGG | 0.354145 | 7.4:+1885590 | None:intergenic |
| AAAGAATTCACATGAATCTT+GGG | 0.363397 | 7.4:+1885591 | None:intergenic |
| TGAGTTTCATGCCTGCTATT+GGG | 0.372914 | 7.4:-1886442 | MS.gene22868:CDS |
| GCAAACTCAGCAGTTGTAAC+AGG | 0.373789 | 7.4:+1885146 | None:intergenic |
| AGGCATGAAACTCATCATTA+TGG | 0.404570 | 7.4:+1886451 | None:intergenic |
| GTGAAACAGGAATCATCTAT+TGG | 0.407409 | 7.4:-1887015 | MS.gene22868:intron |
| TTTGCGTTGCCACACATTAT+GGG | 0.408601 | 7.4:-1884392 | MS.gene22868:CDS |
| AGCAGAATAGTTGTTATTTG+TGG | 0.411050 | 7.4:+1886962 | None:intergenic |
| TGCTCCTTATTCTGTTTACA+AGG | 0.424645 | 7.4:-1886823 | MS.gene22868:CDS |
| GTTGCCACACATTATGGGTT+GGG | 0.425766 | 7.4:-1884387 | MS.gene22868:CDS |
| AACCGACTTCAGTAGCTGAT+AGG | 0.440719 | 7.4:+1885632 | None:intergenic |
| CGTTGCCACACATTATGGGT+TGG | 0.443320 | 7.4:-1884388 | MS.gene22868:CDS |
| ATATACCTTGATTTCATTGA+GGG | 0.447907 | 7.4:+1885562 | None:intergenic |
| GTCGGTTCTTTGATAGCCAT+TGG | 0.458218 | 7.4:-1885616 | MS.gene22868:CDS |
| TTCTTATGCTGCAGTAATGC+TGG | 0.463315 | 7.4:-1885380 | MS.gene22868:intron |
| TTGGGGAGCGCAAATATGAC+TGG | 0.493872 | 7.4:-1886424 | MS.gene22868:CDS |
| GCAGTAATGCTGGTCAAGTA+AGG | 0.498490 | 7.4:-1885370 | MS.gene22868:intron |
| AATAACAACTATTCTGCTAA+AGG | 0.500782 | 7.4:-1886957 | MS.gene22868:intron |
| GAGTTTCATGCCTGCTATTG+GGG | 0.513089 | 7.4:-1886441 | MS.gene22868:CDS |
| ATTGGAAGTTCTTTCCGCTA+GGG | 0.516317 | 7.4:-1886997 | MS.gene22868:CDS |
| ATGACCCCTCAATGAAATCA+AGG | 0.516531 | 7.4:-1885567 | MS.gene22868:intron |
| TTGAAAGCTGACTGTCCCAC+TGG | 0.516551 | 7.4:+1884343 | None:intergenic |
| AATATACCTTGATTTCATTG+AGG | 0.524866 | 7.4:+1885561 | None:intergenic |
| GCCCTATCAGCTACTGAAGT+CGG | 0.527679 | 7.4:-1885634 | MS.gene22868:CDS |
| ACCGACTTCAGTAGCTGATA+GGG | 0.538316 | 7.4:+1885633 | None:intergenic |
| AGGGAGTACCTGGAAGATGA+AGG | 0.540073 | 7.4:+1887108 | None:intergenic |
| TATTTGCGCTCCCCAATAGC+AGG | 0.541622 | 7.4:+1886431 | None:intergenic |
| TATTGGAAGTTCTTTCCGCT+AGG | 0.545874 | 7.4:-1886998 | MS.gene22868:CDS |
| ACAAAGTAGCCATTGCTATG+AGG | 0.558527 | 7.4:+1885329 | None:intergenic |
| ACATGAATCTTGGGGACCAA+TGG | 0.561311 | 7.4:+1885600 | None:intergenic |
| TCAATTAAGCCTCATAGCAA+TGG | 0.569726 | 7.4:-1885338 | MS.gene22868:CDS |
| ACATCCAACTTAGTAAAAGT+AGG | 0.596084 | 7.4:+1886768 | None:intergenic |
| GCTCCTTATTCTGTTTACAA+GGG | 0.608711 | 7.4:-1886822 | MS.gene22868:CDS |
| ATTCTCTTTGGTATTTAACA+CGG | 0.610530 | 7.4:+1885178 | None:intergenic |
| TATACCTTGATTTCATTGAG+GGG | 0.613978 | 7.4:+1885563 | None:intergenic |
| TAACTAATCAGCAGTCCAGT+GGG | 0.621978 | 7.4:-1884358 | MS.gene22868:CDS |
| AAGAATTCACATGAATCTTG+GGG | 0.637953 | 7.4:+1885592 | None:intergenic |
| AAAGAGGCATACACTGCAAG+CGG | 0.640513 | 7.4:+1885112 | None:intergenic |
| TGGGGAGCGCAAATATGACT+GGG | 0.642764 | 7.4:-1886423 | MS.gene22868:CDS |
| CTAACTAATCAGCAGTCCAG+TGG | 0.653328 | 7.4:-1884359 | MS.gene22868:CDS |
| TTAGTAAAAGTAGGAAGACA+AGG | 0.653333 | 7.4:+1886777 | None:intergenic |
| CGATCCCAACCCATAATGTG+TGG | 0.655749 | 7.4:+1884383 | None:intergenic |
| GCTCTTGTTGTTGATCGTCG+CGG | 0.693088 | 7.4:-1886476 | MS.gene22868:CDS |
| GGCAGTAGAGAAATCCCTAG+CGG | 0.738730 | 7.4:+1886983 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACATTGTTTAAATACTA+TGG | - | chr7.4:1885008-1885027 | MS.gene22868:intron | 15.0% |
| !! | TATTATTATTATTGTGAAAC+AGG | - | chr7.4:1884177-1884196 | MS.gene22868:intron | 15.0% |
| !! | TTATTCTCTATTACAAAATA+AGG | + | chr7.4:1885412-1885431 | None:intergenic | 15.0% |
| !!! | TTTAAATACATTCCTTTTTA+CGG | - | chr7.4:1884480-1884499 | MS.gene22868:intron | 15.0% |
| !! | AAGAAAGAAGAAAGAATAAA+AGG | + | chr7.4:1884832-1884851 | None:intergenic | 20.0% |
| !! | AGGAATGTATTTAAATGATT+AGG | + | chr7.4:1884475-1884494 | None:intergenic | 20.0% |
| !! | GTAAATTGTAATATTTCAGA+AGG | - | chr7.4:1887030-1887049 | MS.gene22868:intron | 20.0% |
| !! | TAAAAATGTTGAATCAAGTT+TGG | + | chr7.4:1886374-1886393 | None:intergenic | 20.0% |
| !! | TCAACAAACAAAAAAACTAA+TGG | + | chr7.4:1885765-1885784 | None:intergenic | 20.0% |
| !!! | ATTTTTATGCTTACATTGAT+TGG | - | chr7.4:1884312-1884331 | MS.gene22868:CDS | 20.0% |
| !!! | TTTTAATACATTGGGTATTT+GGG | - | chr7.4:1885936-1885955 | MS.gene22868:intron | 20.0% |
| ! | AAAATTTGTGAGTTCATCTT+TGG | + | chr7.4:1886888-1886907 | None:intergenic | 25.0% |
| ! | AAAGAATTCACATGAATCTT+GGG | + | chr7.4:1885617-1885636 | None:intergenic | 25.0% |
| ! | AAGCAGAAAAAGAATAAACA+AGG | + | chr7.4:1887115-1887134 | None:intergenic | 25.0% |
| ! | AATAACAACTATTCTGCTAA+AGG | - | chr7.4:1884248-1884267 | MS.gene22868:intron | 25.0% |
| ! | AATATACCTTGATTTCATTG+AGG | + | chr7.4:1885647-1885666 | None:intergenic | 25.0% |
| ! | AGAATAACATATTGTCAACT+TGG | - | chr7.4:1885425-1885444 | MS.gene22868:intron | 25.0% |
| ! | ATAAGTTGTTTATCCAAACA+TGG | - | chr7.4:1884655-1884674 | MS.gene22868:intron | 25.0% |
| ! | ATATACCTTGATTTCATTGA+GGG | + | chr7.4:1885646-1885665 | None:intergenic | 25.0% |
| ! | ATATTATATGCTTCACTTTC+AGG | - | chr7.4:1884338-1884357 | MS.gene22868:CDS | 25.0% |
| ! | ATTACAAGTTTACAAAGTAG+TGG | - | chr7.4:1885036-1885055 | MS.gene22868:intron | 25.0% |
| ! | ATTCTCTTTGGTATTTAACA+CGG | + | chr7.4:1886030-1886049 | None:intergenic | 25.0% |
| ! | CAAATACCCAATGTATTAAA+AGG | + | chr7.4:1885937-1885956 | None:intergenic | 25.0% |
| ! | GAATAAGCTATTTGTATAAG+CGG | + | chr7.4:1884620-1884639 | None:intergenic | 25.0% |
| ! | GTCACTAATTAACTTTCAAA+TGG | + | chr7.4:1885795-1885814 | None:intergenic | 25.0% |
| ! | GTCCAAAATCAGATAAAATA+GGG | + | chr7.4:1886725-1886744 | None:intergenic | 25.0% |
| ! | TAAAAGTTGAAAACATGAAG+CGG | + | chr7.4:1885381-1885400 | None:intergenic | 25.0% |
| ! | TACTGTTGGAAAATATGAAA+TGG | - | chr7.4:1886932-1886951 | MS.gene22868:intron | 25.0% |
| ! | TCCAAAATCAGATAAAATAG+GGG | + | chr7.4:1886724-1886743 | None:intergenic | 25.0% |
| ! | TCTCTATTACAAAATAAGGA+AGG | + | chr7.4:1885408-1885427 | None:intergenic | 25.0% |
| ! | TCTCTCATGAGATAATTAAT+TGG | + | chr7.4:1885700-1885719 | None:intergenic | 25.0% |
| ! | TGTCTTAAATAACAATGAAG+TGG | - | chr7.4:1886198-1886217 | MS.gene22868:intron | 25.0% |
| ! | TTAAATACTACAGTTGTAGT+AGG | - | chr7.4:1885125-1885144 | MS.gene22868:CDS | 25.0% |
| ! | TTCAAAAATTGCAGTTAACT+AGG | + | chr7.4:1886629-1886648 | None:intergenic | 25.0% |
| !! | ATTAAAAGCACAAGTATGAT+TGG | + | chr7.4:1886748-1886767 | None:intergenic | 25.0% |
| !! | CTTTTAATACATTGGGTATT+TGG | - | chr7.4:1885935-1885954 | MS.gene22868:intron | 25.0% |
| !! | TGGATTGATAATACACAAAA+TGG | + | chr7.4:1886980-1886999 | None:intergenic | 25.0% |
| !! | TGTTCACCTTTTAATACATT+GGG | - | chr7.4:1885928-1885947 | MS.gene22868:intron | 25.0% |
| !! | TTAAAAGCACAAGTATGATT+GGG | + | chr7.4:1886747-1886766 | None:intergenic | 25.0% |
| !! | TTACACTTTTATTGTCATTC+CGG | - | chr7.4:1886426-1886445 | MS.gene22868:CDS | 25.0% |
| !! | TTGTTCACCTTTTAATACAT+TGG | - | chr7.4:1885927-1885946 | MS.gene22868:intron | 25.0% |
| !!! | TTAAGAGCATTTTATTGTCT+CGG | - | chr7.4:1885311-1885330 | MS.gene22868:intron | 25.0% |
| !!! | TTTTGTTTTCAGGTAATGAT+TGG | - | chr7.4:1886488-1886507 | MS.gene22868:intron | 25.0% |
| AACTTCCGAAACAATGTATT+AGG | + | chr7.4:1885451-1885470 | None:intergenic | 30.0% | |
| AAGAATTCACATGAATCTTG+GGG | + | chr7.4:1885616-1885635 | None:intergenic | 30.0% | |
| AAGAGTTTAAAGAGACATGA+GGG | + | chr7.4:1885293-1885312 | None:intergenic | 30.0% | |
| AAGTTCTACTTGATACTTGT+AGG | - | chr7.4:1885466-1885485 | MS.gene22868:intron | 30.0% | |
| AATTGTGTTTACGTCTATTG+TGG | - | chr7.4:1884940-1884959 | MS.gene22868:intron | 30.0% | |
| ACATCCAACTTAGTAAAAGT+AGG | + | chr7.4:1884440-1884459 | None:intergenic | 30.0% | |
| AGGAACACTAAAATTCTCTT+TGG | + | chr7.4:1886042-1886061 | None:intergenic | 30.0% | |
| ATCTCATGAGAGAACTATAT+AGG | - | chr7.4:1885707-1885726 | MS.gene22868:intron | 30.0% | |
| CCAAAATCAGATAAAATAGG+GGG | + | chr7.4:1886723-1886742 | None:intergenic | 30.0% | |
| CCTGAAAACAAAACAATAGT+CGG | + | chr7.4:1886481-1886500 | None:intergenic | 30.0% | |
| GAAAGAATGAAAGAGATTGT+AGG | + | chr7.4:1884123-1884142 | None:intergenic | 30.0% | |
| GAAAGAATTCACATGAATCT+TGG | + | chr7.4:1885618-1885637 | None:intergenic | 30.0% | |
| GGTCCAAAATCAGATAAAAT+AGG | + | chr7.4:1886726-1886745 | None:intergenic | 30.0% | |
| GTATATTTCACGATTCTCTA+GGG | - | chr7.4:1885660-1885679 | MS.gene22868:intron | 30.0% | |
| GTATTATCAATCCAAAGACT+AGG | - | chr7.4:1886986-1887005 | MS.gene22868:CDS | 30.0% | |
| GTGTAACGTAATGACATAAT+GGG | + | chr7.4:1886141-1886160 | None:intergenic | 30.0% | |
| TAAGAGTTTAAAGAGACATG+AGG | + | chr7.4:1885294-1885313 | None:intergenic | 30.0% | |
| TACACCTTTCACAAGTTATA+TGG | - | chr7.4:1886156-1886175 | MS.gene22868:intron | 30.0% | |
| TATACCTTGATTTCATTGAG+GGG | + | chr7.4:1885645-1885664 | None:intergenic | 30.0% | |
| TTAGTAAAAGTAGGAAGACA+AGG | + | chr7.4:1884431-1884450 | None:intergenic | 30.0% | |
| ! | AAATACATTCCTTTTTACGG+TGG | - | chr7.4:1884483-1884502 | MS.gene22868:intron | 30.0% |
| ! | ACAAATTTTAGACTTGGAGT+GGG | - | chr7.4:1886899-1886918 | MS.gene22868:intron | 30.0% |
| ! | ATCATTGTTCTTTCTAGCAT+TGG | - | chr7.4:1886240-1886259 | MS.gene22868:intron | 30.0% |
| ! | ATTTCCATTTGTTACAGTCT+GGG | - | chr7.4:1884706-1884725 | MS.gene22868:intron | 30.0% |
| ! | GAACTCACAAATTTTAGACT+TGG | - | chr7.4:1886893-1886912 | MS.gene22868:intron | 30.0% |
| !! | AGCAGAATAGTTGTTATTTG+TGG | + | chr7.4:1884246-1884265 | None:intergenic | 30.0% |
| !! | TCTTCCTACTTTTACTAAGT+TGG | - | chr7.4:1884433-1884452 | MS.gene22868:intron | 30.0% |
| !! | TTTCTGCTTTTGTTTACTTC+AGG | - | chr7.4:1887126-1887145 | MS.gene22868:CDS | 30.0% |
| !!! | TAAGAGCATTTTATTGTCTC+GGG | - | chr7.4:1885312-1885331 | MS.gene22868:intron | 30.0% |
| AAAAACCAACCACCGTAAAA+AGG | + | chr7.4:1884495-1884514 | None:intergenic | 35.0% | |
| AAATCAGATAAAATAGGGGG+TGG | + | chr7.4:1886720-1886739 | None:intergenic | 35.0% | |
| AAGAGGGAGACAAAATCATA+AGG | + | chr7.4:1885989-1886008 | None:intergenic | 35.0% | |
| AATCAGATAAAATAGGGGGT+GGG | + | chr7.4:1886719-1886738 | None:intergenic | 35.0% | |
| AGAATGAAAGAGATTGTAGG+AGG | + | chr7.4:1884120-1884139 | None:intergenic | 35.0% | |
| AGACATGAAAAGCAGAAACT+AGG | + | chr7.4:1886183-1886202 | None:intergenic | 35.0% | |
| AGAGTTTAAAGAGACATGAG+GGG | + | chr7.4:1885292-1885311 | None:intergenic | 35.0% | |
| AGGCATGAAACTCATCATTA+TGG | + | chr7.4:1884757-1884776 | None:intergenic | 35.0% | |
| CGAAGATTGATCATGAAGTT+CGG | - | chr7.4:1884915-1884934 | MS.gene22868:intron | 35.0% | |
| CTTGGCCTAATACATTGTTT+CGG | - | chr7.4:1885443-1885462 | MS.gene22868:intron | 35.0% | |
| GAATGAAAGAGATTGTAGGA+GGG | + | chr7.4:1884119-1884138 | None:intergenic | 35.0% | |
| GCTCCTTATTCTGTTTACAA+GGG | - | chr7.4:1884383-1884402 | MS.gene22868:CDS | 35.0% | |
| GGTATATTTCACGATTCTCT+AGG | - | chr7.4:1885659-1885678 | MS.gene22868:intron | 35.0% | |
| GGTGTAACGTAATGACATAA+TGG | + | chr7.4:1886142-1886161 | None:intergenic | 35.0% | |
| GTGAAACAGGAATCATCTAT+TGG | - | chr7.4:1884190-1884209 | MS.gene22868:intron | 35.0% | |
| TATCAATCCAAAGACTAGGA+TGG | - | chr7.4:1886990-1887009 | MS.gene22868:CDS | 35.0% | |
| TCAATTAAGCCTCATAGCAA+TGG | - | chr7.4:1885867-1885886 | MS.gene22868:intron | 35.0% | |
| TGAGAAACTAAGCAGAAAAG+AGG | + | chr7.4:1886112-1886131 | None:intergenic | 35.0% | |
| TGCTCCTTATTCTGTTTACA+AGG | - | chr7.4:1884382-1884401 | MS.gene22868:CDS | 35.0% | |
| TTAACAACAGCTGTCAAAGA+GGG | + | chr7.4:1886005-1886024 | None:intergenic | 35.0% | |
| TTCTACTTGATACTTGTAGG+AGG | - | chr7.4:1885469-1885488 | MS.gene22868:intron | 35.0% | |
| TTGCCCTTGTAAACAGAATA+AGG | + | chr7.4:1884389-1884408 | None:intergenic | 35.0% | |
| ! | ACTGCAATTTTTGAATGCGT+TGG | - | chr7.4:1886634-1886653 | MS.gene22868:intron | 35.0% |
| ! | AGGACCATATAACTTGTGAA+AGG | + | chr7.4:1886163-1886182 | None:intergenic | 35.0% |
| ! | CACAAATTTTAGACTTGGAG+TGG | - | chr7.4:1886898-1886917 | MS.gene22868:intron | 35.0% |
| ! | CAGATTAGTTAGACCATGTT+TGG | + | chr7.4:1884671-1884690 | None:intergenic | 35.0% |
| ! | CATTTCCATTTGTTACAGTC+TGG | - | chr7.4:1884705-1884724 | MS.gene22868:intron | 35.0% |
| ! | CCCCCTATTTTATCTGATTT+TGG | - | chr7.4:1886720-1886739 | MS.gene22868:intron | 35.0% |
| ! | GAGAAAAGATCTGTTGACTA+TGG | + | chr7.4:1885270-1885289 | None:intergenic | 35.0% |
| ! | TTTCCATTTGTTACAGTCTG+GGG | - | chr7.4:1884707-1884726 | MS.gene22868:intron | 35.0% |
| ! | TTTTATTGTCATTCCGGAAC+TGG | - | chr7.4:1886432-1886451 | MS.gene22868:CDS | 35.0% |
| !! | TCTCTAGGGTTAGTAATTGA+TGG | - | chr7.4:1885674-1885693 | MS.gene22868:intron | 35.0% |
| !! | TGTTCTTTCTAGCATTGGTA+GGG | - | chr7.4:1886245-1886264 | MS.gene22868:intron | 35.0% |
| !! | TTGTTCTTTCTAGCATTGGT+AGG | - | chr7.4:1886244-1886263 | MS.gene22868:intron | 35.0% |
| !!! | CCGACTATTGTTTTGTTTTC+AGG | - | chr7.4:1886478-1886497 | MS.gene22868:CDS | 35.0% |
| !!! | GTTGGTTTTTAGGGTTTGTT+TGG | - | chr7.4:1884505-1884524 | MS.gene22868:intron | 35.0% |
| !!! | TTTACGGTGGTTGGTTTTTA+GGG | - | chr7.4:1884496-1884515 | MS.gene22868:intron | 35.0% |
| !!! | TTTTACGGTGGTTGGTTTTT+AGG | - | chr7.4:1884495-1884514 | MS.gene22868:intron | 35.0% |
| ACAAAGTAGCCATTGCTATG+AGG | + | chr7.4:1885879-1885898 | None:intergenic | 40.0% | |
| ACCAGCGAAGTTAAAAAACC+AGG | + | chr7.4:1886670-1886689 | None:intergenic | 40.0% | |
| ACTCGCGTATATGAAGTTTC+AGG | - | chr7.4:1886555-1886574 | MS.gene22868:intron | 40.0% | |
| ATCAGATAAAATAGGGGGTG+GGG | + | chr7.4:1886718-1886737 | None:intergenic | 40.0% | |
| ATGACCCCTCAATGAAATCA+AGG | - | chr7.4:1885638-1885657 | MS.gene22868:CDS | 40.0% | |
| ATGAGTTTCATGCCTGCTAT+TGG | - | chr7.4:1884762-1884781 | MS.gene22868:intron | 40.0% | |
| ATTGGAAGTTCTTTCCGCTA+GGG | - | chr7.4:1884208-1884227 | MS.gene22868:intron | 40.0% | |
| CACAATTGACAGAACTCTCA+TGG | + | chr7.4:1885085-1885104 | None:intergenic | 40.0% | |
| CCAGCGAAGTTAAAAAACCA+GGG | + | chr7.4:1886669-1886688 | None:intergenic | 40.0% | |
| CTACTTTGTCTCTCTGTGTA+AGG | - | chr7.4:1885890-1885909 | MS.gene22868:intron | 40.0% | |
| GTTAACAACAGCTGTCAAAG+AGG | + | chr7.4:1886006-1886025 | None:intergenic | 40.0% | |
| TAACTAATCAGCAGTCCAGT+GGG | - | chr7.4:1886847-1886866 | MS.gene22868:CDS | 40.0% | |
| TATTGGAAGTTCTTTCCGCT+AGG | - | chr7.4:1884207-1884226 | MS.gene22868:intron | 40.0% | |
| TGAGTTTCATGCCTGCTATT+GGG | - | chr7.4:1884763-1884782 | MS.gene22868:intron | 40.0% | |
| TGGAATTGACAGCACAAAGA+AGG | + | chr7.4:1886960-1886979 | None:intergenic | 40.0% | |
| TGGGAAAAGTGAGTTACTGT+TGG | - | chr7.4:1886918-1886937 | MS.gene22868:intron | 40.0% | |
| TTCTTATGCTGCAGTAATGC+TGG | - | chr7.4:1885825-1885844 | MS.gene22868:intron | 40.0% | |
| TTTGCGTTGCCACACATTAT+GGG | - | chr7.4:1886813-1886832 | MS.gene22868:CDS | 40.0% | |
| ! | ACATTCCTTTTTACGGTGGT+TGG | - | chr7.4:1884487-1884506 | MS.gene22868:intron | 40.0% |
| ! | TTTCAGAAGGAAGCATGAGA+AGG | - | chr7.4:1887043-1887062 | MS.gene22868:intron | 40.0% |
| ACAAGTCCTGCGTTGCTAAA+TGG | + | chr7.4:1886309-1886328 | None:intergenic | 45.0% | |
| ACATGAATCTTGGGGACCAA+TGG | + | chr7.4:1885608-1885627 | None:intergenic | 45.0% | |
| AGTGTACCATTTAGCAACGC+AGG | - | chr7.4:1886300-1886319 | MS.gene22868:intron | 45.0% | |
| CAGGACTTGTCATGCAACAT+TGG | - | chr7.4:1886319-1886338 | MS.gene22868:intron | 45.0% | |
| CCAAAGACTAGGATGGTATG+TGG | - | chr7.4:1886997-1887016 | MS.gene22868:CDS | 45.0% | |
| CTAACTAATCAGCAGTCCAG+TGG | - | chr7.4:1886846-1886865 | MS.gene22868:CDS | 45.0% | |
| GAGTTTCATGCCTGCTATTG+GGG | - | chr7.4:1884764-1884783 | MS.gene22868:intron | 45.0% | |
| GCAAACTCAGCAGTTGTAAC+AGG | + | chr7.4:1886062-1886081 | None:intergenic | 45.0% | |
| GCAGTAATGCTGGTCAAGTA+AGG | - | chr7.4:1885835-1885854 | MS.gene22868:intron | 45.0% | |
| GCGTTGCTAAATGGTACACT+AGG | + | chr7.4:1886300-1886319 | None:intergenic | 45.0% | |
| GGACTATGCTATGCTCGTTT+AGG | - | chr7.4:1885057-1885076 | MS.gene22868:intron | 45.0% | |
| GTTGCCACACATTATGGGTT+GGG | - | chr7.4:1886818-1886837 | MS.gene22868:CDS | 45.0% | |
| GTTTGCGTTGCCACACATTA+TGG | - | chr7.4:1886812-1886831 | MS.gene22868:CDS | 45.0% | |
| TAAGCGCTCGTGAAACTCAT+TGG | - | chr7.4:1884570-1884589 | MS.gene22868:intron | 45.0% | |
| TATGCCATGTCTGGTCAAGT+TGG | - | chr7.4:1886455-1886474 | MS.gene22868:CDS | 45.0% | |
| ! | AAAGAGGCATACACTGCAAG+CGG | + | chr7.4:1886096-1886115 | None:intergenic | 45.0% |
| ! | AACCGACTTCAGTAGCTGAT+AGG | + | chr7.4:1885576-1885595 | None:intergenic | 45.0% |
| ! | ACCGACTTCAGTAGCTGATA+GGG | + | chr7.4:1885575-1885594 | None:intergenic | 45.0% |
| ! | CCACATACCATCCTAGTCTT+TGG | + | chr7.4:1887000-1887019 | None:intergenic | 45.0% |
| ! | GTCGGTTCTTTGATAGCCAT+TGG | - | chr7.4:1885589-1885608 | MS.gene22868:CDS | 45.0% |
| !! | TCTTTCTAGCATTGGTAGGG+AGG | - | chr7.4:1886248-1886267 | MS.gene22868:intron | 45.0% |
| !!! | CCCTGGTTTTTTAACTTCGC+TGG | - | chr7.4:1886666-1886685 | MS.gene22868:intron | 45.0% |
| CAGACATGGCATACCAGTTC+CGG | + | chr7.4:1886448-1886467 | None:intergenic | 50.0% | |
| CGATCCCAACCCATAATGTG+TGG | + | chr7.4:1886825-1886844 | None:intergenic | 50.0% | |
| CGTTGCCACACATTATGGGT+TGG | - | chr7.4:1886817-1886836 | MS.gene22868:CDS | 50.0% | |
| GAGCCCCAGACTGTAACAAA+TGG | + | chr7.4:1884713-1884732 | None:intergenic | 50.0% | |
| GCCCTATCAGCTACTGAAGT+CGG | - | chr7.4:1885571-1885590 | MS.gene22868:CDS | 50.0% | |
| GCTTGCTTCCTTCATCTTCC+AGG | - | chr7.4:1884089-1884108 | MS.gene22868:intron | 50.0% | |
| GGCAGTAGAGAAATCCCTAG+CGG | + | chr7.4:1884225-1884244 | None:intergenic | 50.0% | |
| TATTTGCGCTCCCCAATAGC+AGG | + | chr7.4:1884777-1884796 | None:intergenic | 50.0% | |
| TGTATCGTAGCAGAGCGAGT+GGG | + | chr7.4:1885170-1885189 | None:intergenic | 50.0% | |
| TTGAAAGCTGACTGTCCCAC+TGG | + | chr7.4:1886865-1886884 | None:intergenic | 50.0% | |
| ! | TGCGTTGGTCTGTTATTCCC+TGG | - | chr7.4:1886649-1886668 | MS.gene22868:intron | 50.0% |
| ! | TGGGGAGCGCAAATATGACT+GGG | - | chr7.4:1884782-1884801 | MS.gene22868:intron | 50.0% |
| ! | TTGGGGAGCGCAAATATGAC+TGG | - | chr7.4:1884781-1884800 | MS.gene22868:intron | 50.0% |
| !! | AGATTGTAGGAGGGAGTACC+TGG | + | chr7.4:1884110-1884129 | None:intergenic | 50.0% |
| !! | AGGGAGTACCTGGAAGATGA+AGG | + | chr7.4:1884100-1884119 | None:intergenic | 50.0% |
| !! | GCTCTTGTTGTTGATCGTCG+CGG | - | chr7.4:1884729-1884748 | MS.gene22868:intron | 50.0% |
| CGGAACTGGTATGCCATGTC+TGG | - | chr7.4:1886446-1886465 | MS.gene22868:CDS | 55.0% | |
| GTGTATCGTAGCAGAGCGAG+TGG | + | chr7.4:1885171-1885190 | None:intergenic | 55.0% | |
| TCGGCCAACTTGACCAGACA+TGG | + | chr7.4:1886462-1886481 | None:intergenic | 55.0% | |
| ! | ACCACGCAAGCAAGCTTGCT+GGG | + | chr7.4:1885343-1885362 | None:intergenic | 55.0% |
| GACCACGCAAGCAAGCTTGC+TGG | + | chr7.4:1885344-1885363 | None:intergenic | 60.0% | |
| ! | GCAAGCTTGCTTGCGTGGTC+AGG | - | chr7.4:1885344-1885363 | MS.gene22868:CDS | 60.0% |
| ! | GCCCAGCAAGCTTGCTTGCG+TGG | - | chr7.4:1885339-1885358 | MS.gene22868:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 1884073 | 1887154 | 1884073 | ID=MS.gene22868 |
| chr7.4 | mRNA | 1884073 | 1887154 | 1884073 | ID=MS.gene22868.t1;Parent=MS.gene22868 |
| chr7.4 | exon | 1887117 | 1887154 | 1887117 | ID=MS.gene22868.t1.exon1;Parent=MS.gene22868.t1 |
| chr7.4 | CDS | 1887117 | 1887154 | 1887117 | ID=cds.MS.gene22868.t1;Parent=MS.gene22868.t1 |
| chr7.4 | exon | 1886958 | 1887028 | 1886958 | ID=MS.gene22868.t1.exon2;Parent=MS.gene22868.t1 |
| chr7.4 | CDS | 1886958 | 1887028 | 1886958 | ID=cds.MS.gene22868.t1;Parent=MS.gene22868.t1 |
| chr7.4 | exon | 1886770 | 1886867 | 1886770 | ID=MS.gene22868.t1.exon3;Parent=MS.gene22868.t1 |
| chr7.4 | CDS | 1886770 | 1886867 | 1886770 | ID=cds.MS.gene22868.t1;Parent=MS.gene22868.t1 |
| chr7.4 | exon | 1886412 | 1886504 | 1886412 | ID=MS.gene22868.t1.exon4;Parent=MS.gene22868.t1 |
| chr7.4 | CDS | 1886412 | 1886504 | 1886412 | ID=cds.MS.gene22868.t1;Parent=MS.gene22868.t1 |
| chr7.4 | exon | 1885568 | 1885662 | 1885568 | ID=MS.gene22868.t1.exon5;Parent=MS.gene22868.t1 |
| chr7.4 | CDS | 1885568 | 1885662 | 1885568 | ID=cds.MS.gene22868.t1;Parent=MS.gene22868.t1 |
| chr7.4 | exon | 1885321 | 1885388 | 1885321 | ID=MS.gene22868.t1.exon6;Parent=MS.gene22868.t1 |
| chr7.4 | CDS | 1885321 | 1885388 | 1885321 | ID=cds.MS.gene22868.t1;Parent=MS.gene22868.t1 |
| chr7.4 | exon | 1885124 | 1885212 | 1885124 | ID=MS.gene22868.t1.exon7;Parent=MS.gene22868.t1 |
| chr7.4 | CDS | 1885124 | 1885212 | 1885124 | ID=cds.MS.gene22868.t1;Parent=MS.gene22868.t1 |
| chr7.4 | exon | 1884302 | 1884414 | 1884302 | ID=MS.gene22868.t1.exon8;Parent=MS.gene22868.t1 |
| chr7.4 | CDS | 1884302 | 1884414 | 1884302 | ID=cds.MS.gene22868.t1;Parent=MS.gene22868.t1 |
| chr7.4 | exon | 1884073 | 1884079 | 1884073 | ID=MS.gene22868.t1.exon9;Parent=MS.gene22868.t1 |
| chr7.4 | CDS | 1884073 | 1884079 | 1884073 | ID=cds.MS.gene22868.t1;Parent=MS.gene22868.t1 |
| Gene Sequence |
| Protein sequence |
