Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050718.t1 | XP_003626082.1 | 80.7 | 373 | 11 | 3 | 1 | 318 | 1 | 367 | 2.00E-160 | 575.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050718.t1 | Q8VZQ2 | 33.2 | 373 | 115 | 13 | 1 | 288 | 1 | 324 | 8.1e-33 | 142.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050718.t1 | B7FL77 | 80.7 | 373 | 11 | 3 | 1 | 318 | 1 | 367 | 1.5e-160 | 575.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene050718.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050718 | MS.gene050827 | 0.958813 | 9.29E-117 | -1.69E-46 |
| MS.gene050718 | MS.gene072633 | 0.968498 | 9.21E-129 | -1.69E-46 |
| MS.gene050718 | MS.gene28624 | 0.913076 | 9.35E-84 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050718.t1 | MTR_7g110830 | 80.697 | 373 | 11 | 3 | 1 | 318 | 1 | 367 | 0.0 | 570 |
| MS.gene050718.t1 | MTR_1g085640 | 50.255 | 392 | 89 | 18 | 1 | 309 | 1 | 369 | 3.92e-101 | 302 |
| MS.gene050718.t1 | MTR_1g085040 | 36.158 | 354 | 144 | 8 | 1 | 292 | 1 | 334 | 1.18e-49 | 169 |
| MS.gene050718.t1 | MTR_4g105130 | 47.020 | 151 | 26 | 2 | 1 | 98 | 1 | 150 | 2.11e-35 | 131 |
| MS.gene050718.t1 | MTR_1g112760 | 36.111 | 216 | 75 | 2 | 3 | 165 | 4 | 209 | 1.42e-29 | 113 |
| MS.gene050718.t1 | MTR_7g111290 | 47.771 | 157 | 27 | 2 | 1 | 104 | 1 | 155 | 3.56e-29 | 115 |
| MS.gene050718.t1 | MTR_3g077110 | 44.366 | 142 | 25 | 2 | 1 | 88 | 1 | 142 | 4.08e-29 | 114 |
| MS.gene050718.t1 | MTR_2g099740 | 39.098 | 133 | 28 | 1 | 1 | 80 | 1 | 133 | 1.30e-22 | 97.4 |
| MS.gene050718.t1 | MTR_8g017440 | 41.463 | 123 | 19 | 1 | 1 | 70 | 1 | 123 | 3.84e-22 | 95.5 |
| MS.gene050718.t1 | MTR_2g064160 | 40.000 | 130 | 24 | 2 | 1 | 77 | 1 | 129 | 2.64e-21 | 92.4 |
| MS.gene050718.t1 | MTR_8g017500 | 39.837 | 123 | 21 | 1 | 1 | 70 | 1 | 123 | 3.91e-21 | 92.8 |
| MS.gene050718.t1 | MTR_8g017540 | 40.650 | 123 | 20 | 1 | 1 | 70 | 47 | 169 | 7.17e-21 | 92.4 |
| MS.gene050718.t1 | MTR_4g478180 | 38.281 | 128 | 26 | 1 | 1 | 75 | 2 | 129 | 1.37e-20 | 91.3 |
| MS.gene050718.t1 | MTR_3g074520 | 35.606 | 132 | 32 | 1 | 1 | 79 | 1 | 132 | 1.13e-19 | 88.6 |
| MS.gene050718.t1 | MTR_6g012690 | 37.500 | 128 | 27 | 1 | 1 | 75 | 1 | 128 | 1.69e-19 | 88.2 |
| MS.gene050718.t1 | MTR_6g009430 | 34.848 | 132 | 33 | 1 | 1 | 79 | 1 | 132 | 1.78e-19 | 87.8 |
| MS.gene050718.t1 | MTR_4g073420 | 29.282 | 181 | 68 | 2 | 1 | 128 | 1 | 174 | 2.28e-19 | 86.7 |
| MS.gene050718.t1 | MTR_8g017480 | 75.556 | 45 | 11 | 0 | 1 | 45 | 1 | 45 | 5.55e-19 | 79.3 |
| MS.gene050718.t1 | MTR_7g011170 | 37.121 | 132 | 30 | 1 | 1 | 79 | 1 | 132 | 6.81e-19 | 85.9 |
| MS.gene050718.t1 | MTR_8g095390 | 36.364 | 132 | 31 | 1 | 1 | 79 | 1 | 132 | 6.85e-19 | 85.9 |
| MS.gene050718.t1 | MTR_4g082230 | 35.156 | 128 | 30 | 1 | 1 | 75 | 1 | 128 | 1.24e-18 | 86.3 |
| MS.gene050718.t1 | MTR_5g078140 | 34.483 | 145 | 42 | 1 | 1 | 92 | 1 | 145 | 1.95e-18 | 84.7 |
| MS.gene050718.t1 | MTR_8g098860 | 38.136 | 118 | 20 | 1 | 1 | 65 | 1 | 118 | 1.97e-18 | 84.7 |
| MS.gene050718.t1 | MTR_5g010020 | 44.048 | 84 | 45 | 1 | 1 | 82 | 1 | 84 | 7.36e-18 | 83.2 |
| MS.gene050718.t1 | MTR_3g065440 | 37.692 | 130 | 28 | 1 | 1 | 77 | 1 | 130 | 1.48e-17 | 82.0 |
| MS.gene050718.t1 | MTR_4g082290 | 35.156 | 128 | 30 | 1 | 1 | 75 | 1 | 128 | 1.61e-17 | 82.8 |
| MS.gene050718.t1 | MTR_5g029840 | 26.897 | 290 | 116 | 10 | 1 | 229 | 1 | 255 | 3.71e-17 | 81.3 |
| MS.gene050718.t1 | MTR_3g097450 | 33.588 | 131 | 34 | 1 | 1 | 78 | 1 | 131 | 5.78e-17 | 80.1 |
| MS.gene050718.t1 | MTR_5g007370 | 36.667 | 120 | 23 | 1 | 12 | 78 | 12 | 131 | 1.31e-16 | 79.3 |
| MS.gene050718.t1 | MTR_8g017350 | 37.903 | 124 | 23 | 2 | 1 | 70 | 1 | 124 | 2.31e-16 | 80.1 |
| MS.gene050718.t1 | MTR_8g017340 | 37.903 | 124 | 23 | 2 | 1 | 70 | 1 | 124 | 2.44e-16 | 79.7 |
| MS.gene050718.t1 | MTR_8g017390 | 39.316 | 117 | 17 | 2 | 1 | 63 | 1 | 117 | 3.32e-16 | 79.3 |
| MS.gene050718.t1 | MTR_4g102380 | 34.351 | 131 | 33 | 1 | 1 | 78 | 1 | 131 | 1.48e-15 | 75.9 |
| MS.gene050718.t1 | MTR_3g461490 | 31.818 | 154 | 49 | 2 | 1 | 101 | 1 | 151 | 1.55e-15 | 76.3 |
| MS.gene050718.t1 | MTR_4g091490 | 33.333 | 129 | 32 | 2 | 1 | 75 | 1 | 129 | 4.24e-15 | 75.5 |
| MS.gene050718.t1 | MTR_1g100653 | 31.609 | 174 | 58 | 3 | 1 | 115 | 1 | 172 | 6.96e-15 | 74.3 |
| MS.gene050718.t1 | MTR_8g031360 | 37.121 | 132 | 28 | 3 | 1 | 77 | 1 | 132 | 2.20e-14 | 72.8 |
| MS.gene050718.t1 | MTR_7g076740 | 33.835 | 133 | 34 | 3 | 1 | 79 | 1 | 133 | 4.51e-14 | 72.0 |
| MS.gene050718.t1 | MTR_5g079670 | 32.000 | 125 | 32 | 1 | 3 | 74 | 2 | 126 | 9.46e-14 | 69.7 |
| MS.gene050718.t1 | MTR_1g100667 | 36.975 | 119 | 21 | 2 | 9 | 74 | 10 | 127 | 7.14e-13 | 68.2 |
| MS.gene050718.t1 | MTR_7g096930 | 33.898 | 118 | 25 | 1 | 1 | 65 | 1 | 118 | 1.78e-12 | 67.0 |
| MS.gene050718.t1 | MTR_4g065017 | 33.929 | 112 | 21 | 1 | 11 | 69 | 16 | 127 | 3.59e-12 | 66.6 |
| MS.gene050718.t1 | MTR_6g055910 | 37.288 | 118 | 20 | 2 | 9 | 72 | 11 | 128 | 3.66e-12 | 66.2 |
| MS.gene050718.t1 | MTR_7g115650 | 28.667 | 150 | 43 | 2 | 1 | 97 | 1 | 139 | 4.29e-12 | 64.7 |
| MS.gene050718.t1 | MTR_2g097910 | 34.906 | 106 | 16 | 1 | 12 | 64 | 20 | 125 | 6.19e-12 | 65.9 |
| MS.gene050718.t1 | MTR_3g028740 | 34.862 | 109 | 18 | 1 | 9 | 64 | 19 | 127 | 2.66e-11 | 63.9 |
| MS.gene050718.t1 | MTR_5g007310 | 46.835 | 79 | 37 | 2 | 45 | 123 | 6 | 79 | 9.02e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050718.t1 | AT4G01680 | 49.032 | 155 | 26 | 1 | 1 | 102 | 1 | 155 | 7.82e-41 | 142 |
| MS.gene050718.t1 | AT4G01680 | 49.032 | 155 | 26 | 1 | 1 | 102 | 1 | 155 | 2.20e-40 | 144 |
| MS.gene050718.t1 | AT1G09540 | 48.993 | 149 | 23 | 1 | 1 | 96 | 1 | 149 | 6.04e-38 | 138 |
| MS.gene050718.t1 | AT1G57560 | 53.788 | 132 | 8 | 1 | 1 | 79 | 1 | 132 | 9.21e-38 | 137 |
| MS.gene050718.t1 | AT1G57560 | 53.383 | 133 | 9 | 1 | 1 | 80 | 1 | 133 | 2.89e-37 | 134 |
| MS.gene050718.t1 | AT5G26660 | 48.649 | 148 | 21 | 2 | 1 | 93 | 1 | 148 | 3.87e-37 | 136 |
| MS.gene050718.t1 | AT4G01680 | 95.556 | 45 | 2 | 0 | 1 | 45 | 1 | 45 | 2.61e-24 | 101 |
| MS.gene050718.t1 | AT4G01680 | 45.652 | 92 | 48 | 2 | 12 | 102 | 77 | 167 | 6.33e-17 | 80.9 |
| MS.gene050718.t1 | AT3G02940 | 38.519 | 135 | 30 | 1 | 1 | 82 | 1 | 135 | 5.83e-23 | 97.1 |
| MS.gene050718.t1 | AT3G02940 | 38.519 | 135 | 30 | 1 | 1 | 82 | 1 | 135 | 8.82e-23 | 97.1 |
| MS.gene050718.t1 | AT3G02940 | 38.519 | 135 | 30 | 1 | 1 | 82 | 1 | 135 | 8.82e-23 | 97.1 |
| MS.gene050718.t1 | AT5G16770 | 37.778 | 135 | 31 | 1 | 1 | 82 | 1 | 135 | 8.32e-22 | 94.4 |
| MS.gene050718.t1 | AT5G16770 | 37.778 | 135 | 31 | 1 | 1 | 82 | 1 | 135 | 8.32e-22 | 94.4 |
| MS.gene050718.t1 | AT5G16770 | 37.778 | 135 | 31 | 1 | 1 | 82 | 1 | 135 | 1.23e-21 | 94.0 |
| MS.gene050718.t1 | AT5G16770 | 37.778 | 135 | 31 | 1 | 1 | 82 | 1 | 135 | 1.23e-21 | 94.0 |
| MS.gene050718.t1 | AT3G13890 | 42.241 | 116 | 14 | 1 | 1 | 63 | 1 | 116 | 2.10e-21 | 93.6 |
| MS.gene050718.t1 | AT3G12720 | 40.476 | 126 | 21 | 2 | 1 | 73 | 12 | 136 | 3.60e-21 | 92.0 |
| MS.gene050718.t1 | AT1G34670 | 37.121 | 132 | 30 | 1 | 1 | 79 | 1 | 132 | 9.96e-21 | 91.7 |
| MS.gene050718.t1 | AT1G66230 | 39.130 | 138 | 31 | 1 | 1 | 85 | 1 | 138 | 1.05e-20 | 90.5 |
| MS.gene050718.t1 | AT5G15310 | 37.879 | 132 | 29 | 1 | 1 | 79 | 1 | 132 | 1.19e-19 | 88.2 |
| MS.gene050718.t1 | AT5G15310 | 37.879 | 132 | 29 | 1 | 1 | 79 | 1 | 132 | 1.37e-19 | 87.8 |
| MS.gene050718.t1 | AT3G13890 | 44.086 | 93 | 41 | 1 | 1 | 82 | 1 | 93 | 1.59e-19 | 88.6 |
| MS.gene050718.t1 | AT5G15310 | 37.879 | 132 | 29 | 1 | 1 | 79 | 1 | 132 | 3.75e-19 | 85.5 |
| MS.gene050718.t1 | AT1G63910 | 36.719 | 128 | 28 | 1 | 1 | 75 | 1 | 128 | 5.91e-19 | 86.7 |
| MS.gene050718.t1 | AT3G61250 | 37.984 | 129 | 27 | 1 | 1 | 76 | 1 | 129 | 8.19e-19 | 85.5 |
| MS.gene050718.t1 | AT4G34990 | 30.464 | 151 | 52 | 1 | 1 | 98 | 1 | 151 | 1.77e-18 | 84.0 |
| MS.gene050718.t1 | AT5G07690 | 34.286 | 140 | 39 | 1 | 1 | 87 | 1 | 140 | 2.14e-18 | 84.7 |
| MS.gene050718.t1 | AT3G01140 | 37.121 | 132 | 30 | 1 | 1 | 79 | 1 | 132 | 2.16e-18 | 84.7 |
| MS.gene050718.t1 | AT5G61420 | 34.532 | 139 | 36 | 2 | 1 | 84 | 1 | 139 | 2.30e-18 | 85.1 |
| MS.gene050718.t1 | AT2G16720 | 30.128 | 156 | 56 | 1 | 1 | 103 | 1 | 156 | 7.47e-18 | 82.4 |
| MS.gene050718.t1 | AT5G10280 | 33.333 | 132 | 35 | 1 | 1 | 79 | 1 | 132 | 2.28e-17 | 82.0 |
| MS.gene050718.t1 | AT4G21440 | 25.857 | 321 | 133 | 9 | 1 | 237 | 1 | 300 | 2.39e-17 | 82.0 |
| MS.gene050718.t1 | AT5G60890 | 32.558 | 129 | 34 | 1 | 1 | 76 | 1 | 129 | 2.45e-17 | 81.3 |
| MS.gene050718.t1 | AT4G22680 | 35.766 | 137 | 34 | 2 | 1 | 83 | 1 | 137 | 4.11e-17 | 80.1 |
| MS.gene050718.t1 | AT5G16600 | 35.417 | 144 | 40 | 2 | 1 | 91 | 1 | 144 | 6.00e-17 | 80.5 |
| MS.gene050718.t1 | AT4G12350 | 29.240 | 171 | 68 | 1 | 1 | 118 | 1 | 171 | 7.30e-17 | 79.7 |
| MS.gene050718.t1 | AT4G38620 | 32.824 | 131 | 35 | 1 | 1 | 78 | 1 | 131 | 9.49e-17 | 79.3 |
| MS.gene050718.t1 | AT5G65230 | 35.115 | 131 | 32 | 1 | 1 | 78 | 1 | 131 | 1.42e-16 | 79.3 |
| MS.gene050718.t1 | AT4G09460 | 32.593 | 135 | 38 | 1 | 1 | 82 | 1 | 135 | 2.47e-16 | 77.4 |
| MS.gene050718.t1 | AT4G05100 | 34.109 | 129 | 31 | 2 | 1 | 75 | 1 | 129 | 2.81e-16 | 78.6 |
| MS.gene050718.t1 | AT5G26660 | 47.059 | 85 | 41 | 3 | 12 | 93 | 34 | 117 | 1.25e-15 | 76.6 |
| MS.gene050718.t1 | AT1G22640 | 32.061 | 131 | 36 | 1 | 1 | 78 | 1 | 131 | 1.40e-15 | 75.5 |
| MS.gene050718.t1 | AT5G14340 | 29.480 | 173 | 62 | 4 | 1 | 119 | 13 | 179 | 2.96e-15 | 75.1 |
| MS.gene050718.t1 | AT5G56110 | 33.333 | 132 | 35 | 1 | 1 | 79 | 1 | 132 | 3.13e-15 | 75.5 |
| MS.gene050718.t1 | AT3G13540 | 33.099 | 142 | 41 | 2 | 6 | 94 | 17 | 157 | 3.16e-15 | 74.3 |
| MS.gene050718.t1 | AT1G18570 | 32.824 | 131 | 34 | 2 | 1 | 77 | 1 | 131 | 3.19e-15 | 75.9 |
| MS.gene050718.t1 | AT1G74430 | 35.156 | 128 | 30 | 1 | 1 | 75 | 1 | 128 | 3.26e-15 | 74.7 |
| MS.gene050718.t1 | AT5G07700 | 31.538 | 130 | 36 | 1 | 1 | 77 | 1 | 130 | 7.39e-15 | 74.7 |
| MS.gene050718.t1 | AT5G07700 | 31.538 | 130 | 36 | 1 | 1 | 77 | 1 | 130 | 7.39e-15 | 74.7 |
| MS.gene050718.t1 | AT3G28470 | 34.848 | 132 | 33 | 1 | 1 | 79 | 1 | 132 | 2.74e-14 | 72.8 |
| MS.gene050718.t1 | AT1G74080 | 31.783 | 129 | 35 | 1 | 1 | 76 | 1 | 129 | 6.46e-14 | 71.6 |
| MS.gene050718.t1 | AT3G48920 | 54.237 | 59 | 25 | 1 | 9 | 65 | 15 | 73 | 7.69e-14 | 70.9 |
| MS.gene050718.t1 | AT1G18710 | 46.154 | 65 | 35 | 0 | 12 | 76 | 65 | 129 | 6.69e-13 | 68.2 |
| MS.gene050718.t1 | AT2G31180 | 25.381 | 197 | 94 | 1 | 1 | 144 | 1 | 197 | 9.31e-13 | 67.4 |
| MS.gene050718.t1 | AT1G79180 | 33.333 | 117 | 25 | 1 | 2 | 65 | 4 | 120 | 1.28e-11 | 64.7 |
| MS.gene050718.t1 | AT1G74430 | 65.000 | 40 | 13 | 1 | 37 | 75 | 20 | 59 | 2.67e-11 | 62.4 |
| MS.gene050718.t1 | AT5G14340 | 51.020 | 49 | 23 | 1 | 32 | 79 | 6 | 54 | 3.53e-11 | 61.6 |
| MS.gene050718.t1 | AT4G25560 | 35.185 | 108 | 17 | 1 | 8 | 62 | 6 | 113 | 7.03e-11 | 62.4 |
| MS.gene050718.t1 | AT3G08500 | 33.333 | 117 | 22 | 2 | 4 | 64 | 19 | 135 | 7.97e-11 | 62.8 |
| MS.gene050718.t1 | AT5G61420 | 58.824 | 51 | 18 | 2 | 37 | 84 | 10 | 60 | 9.16e-11 | 62.0 |
Find 0 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACATTATCATAATAAGA+AGG | - | 50585:11289-11308 | MS.gene050718:intergenic | 15.0% |
| !! | ATAATGAAATAAAGAATCTT+TGG | + | 50585:11508-11527 | MS.gene050718:CDS | 15.0% |
| !! | GAGATTGAATTATTAAAATT+TGG | - | 50585:11041-11060 | MS.gene050718:intergenic | 15.0% |
| !! | TTGAATCATATTACTAAATA+TGG | + | 50585:10962-10981 | MS.gene050718:CDS | 15.0% |
| !!! | TATTTGTCAATGTATTTTAT+TGG | + | 50585:11113-11132 | MS.gene050718:intron | 15.0% |
| !!! | TGTATTTTTTAATTGTTATG+TGG | + | 50585:11384-11403 | MS.gene050718:intron | 15.0% |
| !! | ATAAGATACTATTCTTCATA+GGG | - | 50585:12055-12074 | MS.gene050718:intergenic | 20.0% |
| !! | ATTATCATAATAAGAAGGAT+TGG | - | 50585:11284-11303 | MS.gene050718:intergenic | 20.0% |
| !!! | ATTATTTGGAATATTATCAG+TGG | - | 50585:11841-11860 | MS.gene050718:intergenic | 20.0% |
| ! | AATAGTATCTTATCTTCTTG+GGG | + | 50585:12062-12081 | MS.gene050718:CDS | 25.0% |
| ! | AGAATAGTATCTTATCTTCT+TGG | + | 50585:12060-12079 | MS.gene050718:CDS | 25.0% |
| ! | ATGTGTAATTCATCTGAATA+GGG | - | 50585:11818-11837 | MS.gene050718:intergenic | 25.0% |
| ! | CATATTACTAAATATGGTCA+TGG | + | 50585:10968-10987 | MS.gene050718:CDS | 25.0% |
| ! | GAATAGTATCTTATCTTCTT+GGG | + | 50585:12061-12080 | MS.gene050718:CDS | 25.0% |
| ! | GATAAGATACTATTCTTCAT+AGG | - | 50585:12056-12075 | MS.gene050718:intergenic | 25.0% |
| ! | TCTCTTGATTATATGCTAAA+AGG | - | 50585:11063-11082 | MS.gene050718:intergenic | 25.0% |
| ! | TGTTTGATTCTCTTTAATAG+AGG | - | 50585:12105-12124 | MS.gene050718:intergenic | 25.0% |
| ! | TTTAATTGTTATGTGGTTGT+TGG | + | 50585:11391-11410 | MS.gene050718:intron | 25.0% |
| !! | AATGTACCTCTTTTTAAATC+AGG | - | 50585:11197-11216 | MS.gene050718:intergenic | 25.0% |
| !! | ATATGATGTGTTTTCTTAGA+TGG | + | 50585:11451-11470 | MS.gene050718:intron | 25.0% |
| !! | TCTTATAATATAGCAGCTTT+TGG | + | 50585:12290-12309 | MS.gene050718:CDS | 25.0% |
| !! | TGATTTTGTAGCATTAACAT+TGG | - | 50585:12167-12186 | MS.gene050718:intergenic | 25.0% |
| AAAGAAGAAACTGAGACAAA+AGG | + | 50585:11542-11561 | MS.gene050718:CDS | 30.0% | |
| AAGAAGAAACTGAGACAAAA+GGG | + | 50585:11543-11562 | MS.gene050718:CDS | 30.0% | |
| AAGTACTTTCTGATCTCATA+AGG | - | 50585:11683-11702 | MS.gene050718:intergenic | 30.0% | |
| AATTCAGAGTTCATGTCAAA+AGG | - | 50585:11903-11922 | MS.gene050718:intergenic | 30.0% | |
| AGGACAATTGAAGATTGTTT+AGG | - | 50585:11732-11751 | MS.gene050718:intergenic | 30.0% | |
| ATAATCCAAACTCTTCTCAT+TGG | + | 50585:11856-11875 | MS.gene050718:CDS | 30.0% | |
| ATTGAACTTCATTCAGTACT+AGG | + | 50585:11242-11261 | MS.gene050718:intron | 30.0% | |
| CAAAGGTTATTCAACTGAAA+TGG | + | 50585:11752-11771 | MS.gene050718:CDS | 30.0% | |
| GATGTGTAATTCATCTGAAT+AGG | - | 50585:11819-11838 | MS.gene050718:intergenic | 30.0% | |
| GTAATTTCCCATCAAATAGT+TGG | - | 50585:11796-11815 | MS.gene050718:intergenic | 30.0% | |
| TAATATATACCTGCTTGCTT+AGG | - | 50585:11010-11029 | MS.gene050718:intergenic | 30.0% | |
| TCTTGTTCCAACTATTTGAT+GGG | + | 50585:11786-11805 | MS.gene050718:CDS | 30.0% | |
| TGAGAAGAGTTTGGATTATT+TGG | - | 50585:11855-11874 | MS.gene050718:intergenic | 30.0% | |
| TTATTCAACTGAAATGGAAG+TGG | + | 50585:11758-11777 | MS.gene050718:CDS | 30.0% | |
| TTCTTGTTCCAACTATTTGA+TGG | + | 50585:11785-11804 | MS.gene050718:CDS | 30.0% | |
| TTGAACTTCATTCAGTACTA+GGG | + | 50585:11243-11262 | MS.gene050718:intron | 30.0% | |
| TTTCAGTTGAATAACCTTTG+AGG | - | 50585:11752-11771 | MS.gene050718:intergenic | 30.0% | |
| ! | AAGAAATGAGGTATTAGTTG+GGG | - | 50585:11958-11977 | MS.gene050718:intergenic | 30.0% |
| ! | GAAGAAATGAGGTATTAGTT+GGG | - | 50585:11959-11978 | MS.gene050718:intergenic | 30.0% |
| ! | TCAATGTATTTTATTGGCAC+AGG | + | 50585:11119-11138 | MS.gene050718:intron | 30.0% |
| ! | TGGTTTGTAGCAAAAAGTAT+TGG | - | 50585:11982-12001 | MS.gene050718:intergenic | 30.0% |
| !! | AAAAGTATTGGGAAGAAATG+AGG | - | 50585:11970-11989 | MS.gene050718:intergenic | 30.0% |
| !! | CAAAAGGTTTTAATCCTGTT+TGG | - | 50585:11887-11906 | MS.gene050718:intergenic | 30.0% |
| !! | GGTTTGTAGCAAAAAGTATT+GGG | - | 50585:11981-12000 | MS.gene050718:intergenic | 30.0% |
| !! | TTAGGTGGATTAATTACTTG+AGG | + | 50585:11171-11190 | MS.gene050718:intron | 30.0% |
| AAAGTGGTTTATGAGTGACA+GGG | - | 50585:11575-11594 | MS.gene050718:intergenic | 35.0% | |
| ACATCATATGCATGTCAACA+AGG | - | 50585:11440-11459 | MS.gene050718:intergenic | 35.0% | |
| ATAGGAAACAGCATCTGATT+TGG | - | 50585:11706-11725 | MS.gene050718:intergenic | 35.0% | |
| CAATCTTCAATTGTCCTCAA+AGG | + | 50585:11735-11754 | MS.gene050718:CDS | 35.0% | |
| CTAAATATGGTCATGGATGT+TGG | + | 50585:10975-10994 | MS.gene050718:CDS | 35.0% | |
| TGAAGATTGTTTAGGCTCAT+AGG | - | 50585:11724-11743 | MS.gene050718:intergenic | 35.0% | |
| TTCATTCAGTACTAGGGAAT+AGG | + | 50585:11249-11268 | MS.gene050718:intron | 35.0% | |
| TTGAACCAATGAGAAGAGTT+TGG | - | 50585:11864-11883 | MS.gene050718:intergenic | 35.0% | |
| TTGAGAAGATTCTTGTTGCT+TGG | - | 50585:12270-12289 | MS.gene050718:intergenic | 35.0% | |
| TTGAGGCCTGATTTAAAAAG+AGG | + | 50585:11188-11207 | MS.gene050718:intron | 35.0% | |
| ! | AAAAGTTTTTCATCCTCCTC+AGG | - | 50585:10944-10963 | MS.gene050718:intergenic | 35.0% |
| ! | ACATTTTCTACCTCAGAAAG+TGG | - | 50585:11591-11610 | MS.gene050718:intergenic | 35.0% |
| ! | AGAAATGAGGTATTAGTTGG+GGG | - | 50585:11957-11976 | MS.gene050718:intergenic | 35.0% |
| ! | GGAAGAAATGAGGTATTAGT+TGG | - | 50585:11960-11979 | MS.gene050718:intergenic | 35.0% |
| ! | GGTAGAAAATGTTGATGAAG+AGG | + | 50585:11599-11618 | MS.gene050718:CDS | 35.0% |
| !! | ATATTTCTGCTGCTTTCTCT+TGG | - | 50585:11641-11660 | MS.gene050718:intergenic | 35.0% |
| AAATTGCTGCACAATTGCCA+GGG | + | 50585:11478-11497 | MS.gene050718:intron | 40.0% | |
| AGAAGCTTAGGAAAGGTCTA+TGG | + | 50585:10915-10934 | MS.gene050718:CDS | 40.0% | |
| AGGGAAAGAAGATGAAGACA+TGG | - | 50585:12036-12055 | MS.gene050718:intergenic | 40.0% | |
| ATAAAGCCTGCCACAGATTT+AGG | + | 50585:12212-12231 | MS.gene050718:CDS | 40.0% | |
| ATTATGTCCCCTAAACCATC+AGG | - | 50585:12239-12258 | MS.gene050718:intergenic | 40.0% | |
| ATTTAGGCCCTGATGGTTTA+GGG | + | 50585:12228-12247 | MS.gene050718:CDS | 40.0% | |
| ATTTCATTATCAGTCCTCCC+TGG | - | 50585:11498-11517 | MS.gene050718:intergenic | 40.0% | |
| CACTCATAAACCACTTTCTG+AGG | + | 50585:11578-11597 | MS.gene050718:CDS | 40.0% | |
| GAAAGTGGTTTATGAGTGAC+AGG | - | 50585:11576-11595 | MS.gene050718:intergenic | 40.0% | |
| GACATGGAAACATCTTGTGA+AGG | - | 50585:12020-12039 | MS.gene050718:intergenic | 40.0% | |
| GTGAAGATACTCATTCCACT+TGG | - | 50585:12141-12160 | MS.gene050718:intergenic | 40.0% | |
| TACAAGCAGAAGCTTAGGAA+AGG | + | 50585:10908-10927 | MS.gene050718:CDS | 40.0% | |
| TCAACTGAAATGGAAGTGGA+AGG | + | 50585:11762-11781 | MS.gene050718:CDS | 40.0% | |
| TTATGTCCCCTAAACCATCA+GGG | - | 50585:12238-12257 | MS.gene050718:intergenic | 40.0% | |
| TTATTGGCACAGGTCTTCAA+AGG | + | 50585:11129-11148 | MS.gene050718:intron | 40.0% | |
| ! | GATTCTTGTTGCTTGGAATG+TGG | - | 50585:12263-12282 | MS.gene050718:intergenic | 40.0% |
| ! | TGTGTGAGTGTTGTAAACTC+TGG | - | 50585:11331-11350 | MS.gene050718:intergenic | 40.0% |
| !! | TCTCATTGGTTCAACCAAAC+AGG | + | 50585:11870-11889 | MS.gene050718:CDS | 40.0% |
| AGTTCAGTTCCTAAGCAAGC+AGG | + | 50585:10998-11017 | MS.gene050718:CDS | 45.0% | |
| CAAATTGCTGCACAATTGCC+AGG | + | 50585:11477-11496 | MS.gene050718:intron | 45.0% | |
| CAGAAGAAGAAGAAGCCAAG+TGG | + | 50585:12123-12142 | MS.gene050718:CDS | 45.0% | |
| GAAGGAACATCAGCAAGTGA+TGG | - | 50585:12002-12021 | MS.gene050718:intergenic | 45.0% | |
| GATTTAGGCCCTGATGGTTT+AGG | + | 50585:12227-12246 | MS.gene050718:CDS | 45.0% | |
| GTTGCTACAAGCAGAAGCTT+AGG | + | 50585:10903-10922 | MS.gene050718:CDS | 45.0% | |
| TTTAGGCCCTGATGGTTTAG+GGG | + | 50585:12229-12248 | MS.gene050718:CDS | 45.0% | |
| ! | AAAGGTGTGGTAAGAGTTGC+AGG | + | 50585:11147-11166 | MS.gene050718:intron | 45.0% |
| ACACCAGAGTCTAACGCAAG+TGG | - | 50585:11367-11386 | MS.gene050718:intergenic | 50.0% | |
| ACCATCAGGGCCTAAATCTG+TGG | - | 50585:12225-12244 | MS.gene050718:intergenic | 50.0% | |
| CAACCACTTGCGTTAGACTC+TGG | + | 50585:11361-11380 | MS.gene050718:intron | 50.0% | |
| CAGAGTCTAACGCAAGTGGT+TGG | - | 50585:11363-11382 | MS.gene050718:intergenic | 50.0% | |
| GAAAGGTCTATGGTCACCTG+AGG | + | 50585:10925-10944 | MS.gene050718:CDS | 50.0% | |
| GTAAGAGTTGCAGGCTTAGG+TGG | + | 50585:11156-11175 | MS.gene050718:intron | 50.0% | |
| GTGGTAAGAGTTGCAGGCTT+AGG | + | 50585:11153-11172 | MS.gene050718:intron | 50.0% | |
| AGGTCTATGGTCACCTGAGG+AGG | + | 50585:10928-10947 | MS.gene050718:CDS | 55.0% | |
| GCCACAGATTTAGGCCCTGA+TGG | + | 50585:12221-12240 | MS.gene050718:CDS | 55.0% | |
| GGCACAGGTCTTCAAAGGTG+TGG | + | 50585:11134-11153 | MS.gene050718:intron | 55.0% | |
| TCAGGGCCTAAATCTGTGGC+AGG | - | 50585:12221-12240 | MS.gene050718:intergenic | 55.0% | |
| TTGCTGCACAATTGCCAGGG+AGG | + | 50585:11481-11500 | MS.gene050718:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 50585 | gene | 10887 | 12322 | 10887 | ID=MS.gene050718 |
| 50585 | mRNA | 10887 | 12322 | 10887 | ID=MS.gene050718.t1;Parent=MS.gene050718 |
| 50585 | exon | 10887 | 11019 | 10887 | ID=MS.gene050718.t1.exon1;Parent=MS.gene050718.t1 |
| 50585 | CDS | 10887 | 11019 | 10887 | ID=cds.MS.gene050718.t1;Parent=MS.gene050718.t1 |
| 50585 | exon | 11499 | 12322 | 11499 | ID=MS.gene050718.t1.exon2;Parent=MS.gene050718.t1 |
| 50585 | CDS | 11499 | 12322 | 11499 | ID=cds.MS.gene050718.t1;Parent=MS.gene050718.t1 |
| Gene Sequence |
| Protein sequence |
