Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050753.t1 | XP_013450454.1 | 100 | 202 | 0 | 0 | 1 | 202 | 1 | 202 | 4.00E-77 | 297.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050753.t1 | Q96NC0 | 56.1 | 196 | 83 | 3 | 8 | 201 | 3 | 197 | 4.3e-32 | 139.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050753.t1 | A0A072U456 | 100.0 | 202 | 0 | 0 | 1 | 202 | 1 | 202 | 2.9e-77 | 297.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene050753.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050753 | MS.gene050957 | 0.996029 | 1.40E-222 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050753.t1 | MTR_7g112060 | 100.000 | 202 | 0 | 0 | 1 | 202 | 1 | 202 | 3.03e-149 | 412 |
| MS.gene050753.t1 | MTR_7g112060 | 99.505 | 202 | 0 | 1 | 1 | 202 | 1 | 201 | 8.88e-147 | 406 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050753.t1 | AT3G05760 | 72.000 | 200 | 54 | 1 | 4 | 201 | 2 | 201 | 7.17e-95 | 275 |
| MS.gene050753.t1 | AT3G05760 | 79.021 | 143 | 30 | 0 | 5 | 147 | 3 | 145 | 6.45e-83 | 243 |
Find 41 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTGACGTTGCTGCCTTGA+TGG | 0.273991 | 7.2:-4636045 | MS.gene050753:CDS |
| AACTACTTGGATCATATTAA+TGG | 0.276389 | 7.2:-4637601 | MS.gene050753:CDS |
| GCAACGTCAGGATCCATTTC+AGG | 0.287879 | 7.2:+4636056 | None:intergenic |
| GTTGCTGCCTTGATGGGGTT+TGG | 0.376323 | 7.2:-4636038 | MS.gene050753:CDS |
| CCTGACGTTGCTGCCTTGAT+GGG | 0.380236 | 7.2:-4636044 | MS.gene050753:CDS |
| AGAAAGAAAGCGACTGCGTC+GGG | 0.394814 | 7.2:-4636356 | MS.gene050753:CDS |
| TCATAATCTCTATGTTTCAA+TGG | 0.398737 | 7.2:+4639237 | None:intergenic |
| AATTGAACTTACACTGTTGC+TGG | 0.398841 | 7.2:+4639565 | None:intergenic |
| CTTGCTCTGTAAAGCTTCCT+AGG | 0.401772 | 7.2:+4636752 | None:intergenic |
| TTCAATGGCTTCCTCTGCAC+TGG | 0.417126 | 7.2:+4639252 | None:intergenic |
| TCAAGTACCTGTTGGCTTAG+TGG | 0.422359 | 7.2:+4638840 | None:intergenic |
| AGCAGTAGAAGAACCTGAAA+TGG | 0.433262 | 7.2:-4636069 | MS.gene050753:CDS |
| TCCACAGATCAGAGAGCGTT+GGG | 0.434413 | 7.2:-4637478 | MS.gene050753:intron |
| CCCATCAAGGCAGCAACGTC+AGG | 0.440366 | 7.2:+4636044 | None:intergenic |
| AGTCGGTTGAATTAGGCCGC+TGG | 0.440914 | 7.2:-4639469 | MS.gene050753:intron |
| TGCTCGTGAGCGTGAGAGAC+AGG | 0.449139 | 7.2:-4639395 | MS.gene050753:CDS |
| TGAACGTTCTTCTCTCAAAC+AGG | 0.469716 | 7.2:-4637440 | MS.gene050753:intron |
| GTCGGTTGAATTAGGCCGCT+GGG | 0.482459 | 7.2:-4639468 | MS.gene050753:intron |
| AATGGCTTCCTCTGCACTGG+AGG | 0.506607 | 7.2:+4639255 | None:intergenic |
| GAAGGACTCAGCAAACTACT+TGG | 0.508744 | 7.2:-4637614 | MS.gene050753:CDS |
| GGTTGCACCACTAAGCCAAC+AGG | 0.522528 | 7.2:-4638847 | MS.gene050753:intron |
| GAAGAGAAAGCAAAACCTAA+AGG | 0.524374 | 7.2:-4639370 | MS.gene050753:intron |
| AAGAAAGAAAGCGACTGCGT+CGG | 0.529732 | 7.2:-4636357 | MS.gene050753:CDS |
| GGTTTGAAAATCTGAAGAAA+CGG | 0.530251 | 7.2:-4636780 | MS.gene050753:CDS |
| TGTTGGCTTAGTGGTGCAAC+CGG | 0.533524 | 7.2:+4638849 | None:intergenic |
| TTCCACAGATCAGAGAGCGT+TGG | 0.536771 | 7.2:-4637479 | MS.gene050753:intron |
| GTAGACCTTGAATCCCGCTT+GGG | 0.547442 | 7.2:-4639213 | MS.gene050753:CDS |
| GCTGCCTTGATGGGGTTTGG+AGG | 0.549348 | 7.2:-4636035 | MS.gene050753:CDS |
| AGTAGACCTTGAATCCCGCT+TGG | 0.550337 | 7.2:-4639214 | MS.gene050753:CDS |
| AGTTTGTGAGTGCGTGGTGA+AGG | 0.552418 | 7.2:-4637632 | MS.gene050753:CDS |
| CTAGGAAGCTTTACAGAGCA+AGG | 0.559657 | 7.2:-4636751 | MS.gene050753:intron |
| CTGACGTTGCTGCCTTGATG+GGG | 0.560761 | 7.2:-4636043 | MS.gene050753:CDS |
| CTGAAGAAACGGAAAGACCT+AGG | 0.564143 | 7.2:-4636769 | MS.gene050753:CDS |
| ATTAAAACAGCAACAAGAAG+AGG | 0.569720 | 7.2:-4636380 | MS.gene050753:CDS |
| AAAACCTCCAAACCCCATCA+AGG | 0.581455 | 7.2:+4636031 | None:intergenic |
| GTAGAGGTCCTCCAGTGCAG+AGG | 0.618289 | 7.2:-4639263 | MS.gene050753:CDS |
| CTGCTCAGTTTGTGAGTGCG+TGG | 0.632386 | 7.2:-4637638 | MS.gene050753:CDS |
| GATAAACGCAGGTTCAGGAA+CGG | 0.641006 | 7.2:-4636801 | MS.gene050753:intron |
| TCGGTTGAATTAGGCCGCTG+GGG | 0.647690 | 7.2:-4639467 | MS.gene050753:intron |
| TGAACTTACACTGTTGCTGG+TGG | 0.666094 | 7.2:+4639568 | None:intergenic |
| GAATGTGTTGTCAACCCCAG+CGG | 0.671454 | 7.2:+4639453 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAACTTCATATTATATATAT+AGG | - | chr7.2:4636303-4636322 | MS.gene050753:intron | 10.0% |
| !! | AACTTACCTAATAATAATTA+GGG | + | chr7.2:4638466-4638485 | None:intergenic | 15.0% |
| !! | ATATACATTATTAAATCCAA+TGG | + | chr7.2:4637914-4637933 | None:intergenic | 15.0% |
| !! | TTCAAATTAATAATTTGAGT+CGG | - | chr7.2:4636102-4636121 | MS.gene050753:intron | 15.0% |
| !!! | AAATTTTAGAAATGATCTTA+GGG | - | chr7.2:4637255-4637274 | MS.gene050753:intron | 15.0% |
| !!! | ATTTTGATATTTACAGATTT+GGG | - | chr7.2:4638220-4638239 | MS.gene050753:intron | 15.0% |
| !!! | TAAATTTTAGAAATGATCTT+AGG | - | chr7.2:4637254-4637273 | MS.gene050753:intron | 15.0% |
| !!! | TGTTTATTTATTTCATTTTC+TGG | + | chr7.2:4638190-4638209 | None:intergenic | 15.0% |
| !!! | TTGATCTATAACTAAAATTT+TGG | - | chr7.2:4638983-4639002 | MS.gene050753:intron | 15.0% |
| !!! | TTTATGTTGGTTAAAAATAT+GGG | - | chr7.2:4637420-4637439 | MS.gene050753:intron | 15.0% |
| !!! | TTTTATGTTGGTTAAAAATA+TGG | - | chr7.2:4637419-4637438 | MS.gene050753:intron | 15.0% |
| !! | AACGAAAAGATTAATCATAT+AGG | + | chr7.2:4637374-4637393 | None:intergenic | 20.0% |
| !! | AATATTGTAATGTCTAGAAA+AGG | + | chr7.2:4637181-4637200 | None:intergenic | 20.0% |
| !! | ACTTACCTAATAATAATTAG+GGG | + | chr7.2:4638465-4638484 | None:intergenic | 20.0% |
| !! | ATATTGTAATGTCTAGAAAA+GGG | + | chr7.2:4637180-4637199 | None:intergenic | 20.0% |
| !! | ATCAAAAAGATTATCCATAT+AGG | + | chr7.2:4637874-4637893 | None:intergenic | 20.0% |
| !! | CAAATCTGTAAATATCAAAA+TGG | + | chr7.2:4638221-4638240 | None:intergenic | 20.0% |
| !! | CAACTTACCTAATAATAATT+AGG | + | chr7.2:4638467-4638486 | None:intergenic | 20.0% |
| !! | CATAACTGTGTTATATATTA+GGG | - | chr7.2:4637282-4637301 | MS.gene050753:intron | 20.0% |
| !! | CATATTATATATATAGGTAG+AGG | - | chr7.2:4636309-4636328 | MS.gene050753:intron | 20.0% |
| !! | CATATTGAAATTTCAAATGT+TGG | - | chr7.2:4639095-4639114 | MS.gene050753:intron | 20.0% |
| !! | GATTTAATAATGTATATTGC+AGG | - | chr7.2:4637917-4637936 | MS.gene050753:intron | 20.0% |
| !! | TCAATTAGAATACAAAATCT+TGG | - | chr7.2:4639306-4639325 | MS.gene050753:intron | 20.0% |
| !! | TCATAACTGTGTTATATATT+AGG | - | chr7.2:4637281-4637300 | MS.gene050753:intron | 20.0% |
| !! | TTAACCAACATAAAATCTAA+AGG | + | chr7.2:4637414-4637433 | None:intergenic | 20.0% |
| !!! | AACTTTGCTTGTTAAAAATA+TGG | - | chr7.2:4636950-4636969 | MS.gene050753:intron | 20.0% |
| !!! | ACTTTGCTTGTTAAAAATAT+GGG | - | chr7.2:4636951-4636970 | MS.gene050753:intron | 20.0% |
| !!! | ATTTTATGTTGTAGACTTTT+AGG | - | chr7.2:4636621-4636640 | MS.gene050753:intron | 20.0% |
| !!! | CATTTTGATATTTACAGATT+TGG | - | chr7.2:4638219-4638238 | MS.gene050753:intron | 20.0% |
| !!! | TCTTTTTCCAAATTATATGT+GGG | - | chr7.2:4637543-4637562 | MS.gene050753:intron | 20.0% |
| !!! | TTTTTTCAGATTTTGATGAA+AGG | - | chr7.2:4639183-4639202 | MS.gene050753:intron | 20.0% |
| ! | AAAATTCAATTTCCACACTA+AGG | + | chr7.2:4639160-4639179 | None:intergenic | 25.0% |
| ! | AAACCATCGACAATAAATAT+TGG | + | chr7.2:4636057-4636076 | None:intergenic | 25.0% |
| ! | AACCATCGACAATAAATATT+GGG | + | chr7.2:4636056-4636075 | None:intergenic | 25.0% |
| ! | AACTACTTGGATCATATTAA+TGG | - | chr7.2:4637987-4638006 | MS.gene050753:intron | 25.0% |
| ! | AAGAAACTGTAATCTGAATA+CGG | + | chr7.2:4639282-4639301 | None:intergenic | 25.0% |
| ! | AATAAAAATCAAGTACCTGT+TGG | + | chr7.2:4636759-4636778 | None:intergenic | 25.0% |
| ! | AATAAAGCTTCTACAATTTC+AGG | + | chr7.2:4638939-4638958 | None:intergenic | 25.0% |
| ! | ACTTTAATGTCCATTATTCT+TGG | - | chr7.2:4638913-4638932 | MS.gene050753:intron | 25.0% |
| ! | ATATTGCAATGTCTAGAAAA+AGG | + | chr7.2:4637680-4637699 | None:intergenic | 25.0% |
| ! | ATTAGAATTCATAGACTAGA+AGG | + | chr7.2:4638630-4638649 | None:intergenic | 25.0% |
| ! | CATAACTCTGTTATATATCA+GGG | - | chr7.2:4637782-4637801 | MS.gene050753:intron | 25.0% |
| ! | TATTGCAATGTCTAGAAAAA+GGG | + | chr7.2:4637679-4637698 | None:intergenic | 25.0% |
| ! | TCATAACTCTGTTATATATC+AGG | - | chr7.2:4637781-4637800 | MS.gene050753:intron | 25.0% |
| ! | TCATAATCTCTATGTTTCAA+TGG | + | chr7.2:4636354-4636373 | None:intergenic | 25.0% |
| ! | TTCTAGTCTATGAATTCTAA+TGG | - | chr7.2:4638629-4638648 | MS.gene050753:intron | 25.0% |
| !! | AAAAACTCAGGTATGTTTTA+AGG | - | chr7.2:4636398-4636417 | MS.gene050753:CDS | 25.0% |
| !! | AGTACCTTTAGATTTTATGT+TGG | - | chr7.2:4637407-4637426 | MS.gene050753:intron | 25.0% |
| !! | CTCTTTTTCCAAATTATATG+TGG | - | chr7.2:4637542-4637561 | MS.gene050753:intron | 25.0% |
| !! | TGTGAAATTAGTTTACCTTT+AGG | + | chr7.2:4636236-4636255 | None:intergenic | 25.0% |
| !!! | ATAGCCTTTATTTCTTTTGT+TGG | - | chr7.2:4636871-4636890 | MS.gene050753:intron | 25.0% |
| !!! | ATCACTTTTAGAAAGATAGA+TGG | + | chr7.2:4639416-4639435 | None:intergenic | 25.0% |
| !!! | GTATTTGTGTACTTTGAAAT+TGG | - | chr7.2:4636781-4636800 | MS.gene050753:CDS | 25.0% |
| !!! | TAGCCTTTATTTCTTTTGTT+GGG | - | chr7.2:4636872-4636891 | MS.gene050753:intron | 25.0% |
| !!! | TATGTTTGCTTTTTTGAGTT+TGG | - | chr7.2:4636584-4636603 | MS.gene050753:intron | 25.0% |
| !!! | TCGTATTTTTGAATACTTCT+AGG | - | chr7.2:4639047-4639066 | MS.gene050753:intron | 25.0% |
| AATAATAATTAGGGGAGAGA+AGG | + | chr7.2:4638457-4638476 | None:intergenic | 30.0% | |
| AATCTCCTTAATTGAAAGGT+CGG | + | chr7.2:4638965-4638984 | None:intergenic | 30.0% | |
| AGAAACCAAATGACACATAA+TGG | + | chr7.2:4638724-4638743 | None:intergenic | 30.0% | |
| AGTGAATGTCAAGGATTTAT+AGG | - | chr7.2:4636505-4636524 | MS.gene050753:intron | 30.0% | |
| ATAATAATTAGGGGAGAGAA+GGG | + | chr7.2:4638456-4638475 | None:intergenic | 30.0% | |
| ATAGGTTTCTTCTCTAGTAT+GGG | - | chr7.2:4638573-4638592 | MS.gene050753:intron | 30.0% | |
| ATCCCAATATTTATTGTCGA+TGG | - | chr7.2:4636051-4636070 | MS.gene050753:CDS | 30.0% | |
| ATTAAAACAGCAACAAGAAG+AGG | - | chr7.2:4639208-4639227 | MS.gene050753:CDS | 30.0% | |
| CAACTCTCTTCTATTATCTT+AGG | + | chr7.2:4638868-4638887 | None:intergenic | 30.0% | |
| CCCACATATAATTTGGAAAA+CGG | + | chr7.2:4637080-4637099 | None:intergenic | 30.0% | |
| CTAAGATAATAGAAGAGAGT+TGG | - | chr7.2:4638866-4638885 | MS.gene050753:intron | 30.0% | |
| GATCAATCTCCTTAATTGAA+AGG | + | chr7.2:4638969-4638988 | None:intergenic | 30.0% | |
| GGTTTGAAAATCTGAAGAAA+CGG | - | chr7.2:4638808-4638827 | MS.gene050753:intron | 30.0% | |
| TAAATCCTTGACATTCACTT+AGG | + | chr7.2:4636504-4636523 | None:intergenic | 30.0% | |
| TAAATCTTTGTGATAAACGC+AGG | - | chr7.2:4638776-4638795 | MS.gene050753:intron | 30.0% | |
| TAATAATGTATATTGCAGGC+TGG | - | chr7.2:4637921-4637940 | MS.gene050753:intron | 30.0% | |
| TAATTTGAGTCGGTTGAATT+AGG | - | chr7.2:4636112-4636131 | MS.gene050753:intron | 30.0% | |
| TCAAGCAATGTCAAAGATAA+TGG | + | chr7.2:4638660-4638679 | None:intergenic | 30.0% | |
| TCGGGAAAAGAAAAAAGAAA+AGG | - | chr7.2:4639250-4639269 | MS.gene050753:CDS | 30.0% | |
| TCTCTCCCCTAATTATTATT+AGG | - | chr7.2:4638457-4638476 | MS.gene050753:intron | 30.0% | |
| TTGGAAAAAGAGAACTTTCA+GGG | + | chr7.2:4637534-4637553 | None:intergenic | 30.0% | |
| TTGTGATATTAATTGTCTCG+TGG | - | chr7.2:4637649-4637668 | MS.gene050753:CDS | 30.0% | |
| TTGTGATTTCAATTGTCTTG+TGG | - | chr7.2:4637150-4637169 | MS.gene050753:intron | 30.0% | |
| TTTGGAAAAAGAGAACTTTC+AGG | + | chr7.2:4637535-4637554 | None:intergenic | 30.0% | |
| ! | ACCGTTTTCCAAATTATATG+TGG | - | chr7.2:4637076-4637095 | MS.gene050753:intron | 30.0% |
| ! | AGAAACGTATGTAGTCTTTT+TGG | - | chr7.2:4638012-4638031 | MS.gene050753:intron | 30.0% |
| ! | CAATTTTTGCATTCAGAAGA+AGG | - | chr7.2:4639495-4639514 | MS.gene050753:intron | 30.0% |
| ! | CCGTTTTCCAAATTATATGT+GGG | - | chr7.2:4637077-4637096 | MS.gene050753:intron | 30.0% |
| !! | ACCTGATATCACTTTTATAG+AGG | + | chr7.2:4638246-4638265 | None:intergenic | 30.0% |
| !! | AGCCTTTATTTCTTTTGTTG+GGG | - | chr7.2:4636873-4636892 | MS.gene050753:intron | 30.0% |
| !! | TTAATTGCTGCTTTGTGAAA+AGG | + | chr7.2:4639467-4639486 | None:intergenic | 30.0% |
| !!! | TCTTTTTATTTTCAGAACCC+AGG | + | chr7.2:4638269-4638288 | None:intergenic | 30.0% |
| AATAACCATGAGCAAAGTGA+CGG | + | chr7.2:4638080-4638099 | None:intergenic | 35.0% | |
| AATTGAACTTACACTGTTGC+TGG | + | chr7.2:4636026-4636045 | None:intergenic | 35.0% | |
| ATAAAAGTGATATCAGGTCC+TGG | - | chr7.2:4638248-4638267 | MS.gene050753:intron | 35.0% | |
| ATCACAAAAAACACAGCCAA+TGG | + | chr7.2:4637137-4637156 | None:intergenic | 35.0% | |
| CAATTTCAGGCCAAGAATAA+TGG | + | chr7.2:4638926-4638945 | None:intergenic | 35.0% | |
| CACAGGAATTTGGAAAACTT+TGG | + | chr7.2:4637464-4637483 | None:intergenic | 35.0% | |
| CATAGGTTTCTTCTCTAGTA+TGG | - | chr7.2:4638572-4638591 | MS.gene050753:intron | 35.0% | |
| CTCCCCAACAAAAGAAATAA+AGG | + | chr7.2:4636878-4636897 | None:intergenic | 35.0% | |
| GAAGAGAAAGCAAAACCTAA+AGG | - | chr7.2:4636218-4636237 | MS.gene050753:intron | 35.0% | |
| GATTATCCATATAGGATCCT+TGG | + | chr7.2:4637866-4637885 | None:intergenic | 35.0% | |
| GATTTATAACTGTCATGCAG+AGG | + | chr7.2:4638762-4638781 | None:intergenic | 35.0% | |
| GCCTCTATAAAAGTGATATC+AGG | - | chr7.2:4638242-4638261 | MS.gene050753:intron | 35.0% | |
| TAAAAGTGATATCAGGTCCT+GGG | - | chr7.2:4638249-4638268 | MS.gene050753:intron | 35.0% | |
| TCAAACAGGTACAGTGATAT+AGG | - | chr7.2:4638162-4638181 | MS.gene050753:intron | 35.0% | |
| TGAACGGTATGAACAAATCT+TGG | + | chr7.2:4636673-4636692 | None:intergenic | 35.0% | |
| TGTCTGGATTACTTTCTTTC+AGG | - | chr7.2:4636424-4636443 | MS.gene050753:intron | 35.0% | |
| TTAAGCTGTGTATCCAAACA+GGG | - | chr7.2:4636478-4636497 | MS.gene050753:intron | 35.0% | |
| TTCAACCGACCTTTCAATTA+AGG | - | chr7.2:4638957-4638976 | MS.gene050753:intron | 35.0% | |
| TTCCAAATTATATGTGGGCA+AGG | - | chr7.2:4637082-4637101 | MS.gene050753:intron | 35.0% | |
| ! | ATCACTTGCTTGATCTTTTC+GGG | + | chr7.2:4637108-4637127 | None:intergenic | 35.0% |
| ! | CAAAGTTTTCCAAATACCTG+TGG | - | chr7.2:4636993-4637012 | MS.gene050753:intron | 35.0% |
| ! | CAAAGTTTTCCAAATTCCTG+TGG | - | chr7.2:4637462-4637481 | MS.gene050753:CDS | 35.0% |
| ! | CAATGTCAAAGATAATGGCA+TGG | + | chr7.2:4638655-4638674 | None:intergenic | 35.0% |
| ! | GATATCGTGTCATATTTTGC+AGG | - | chr7.2:4636708-4636727 | MS.gene050753:intron | 35.0% |
| ! | GATCACTTGCTTGATCTTTT+CGG | + | chr7.2:4637109-4637128 | None:intergenic | 35.0% |
| ! | GTGTTCCATTATGTGTCATT+TGG | - | chr7.2:4638716-4638735 | MS.gene050753:intron | 35.0% |
| ! | TATTTTGCAGGTTGTAACAC+CGG | - | chr7.2:4636720-4636739 | MS.gene050753:intron | 35.0% |
| !! | CTTTATTTCTTTTGTTGGGG+AGG | - | chr7.2:4636876-4636895 | MS.gene050753:intron | 35.0% |
| AGCAAGTGATCTTTCACCAT+TGG | - | chr7.2:4637118-4637137 | MS.gene050753:intron | 40.0% | |
| AGCAGTAGAAGAACCTGAAA+TGG | - | chr7.2:4639519-4639538 | MS.gene050753:intron | 40.0% | |
| AGGCTATCAAGAGAGTAAAG+AGG | + | chr7.2:4636858-4636877 | None:intergenic | 40.0% | |
| ATCAGAGAGCTAGACAGAAA+TGG | + | chr7.2:4639353-4639372 | None:intergenic | 40.0% | |
| ATCATATAGGATCCTTCGCA+AGG | + | chr7.2:4637361-4637380 | None:intergenic | 40.0% | |
| GAGAAGAAACCTATGAGATG+AGG | + | chr7.2:4638567-4638586 | None:intergenic | 40.0% | |
| GAGAAGAAGCCTATAAGATG+AGG | + | chr7.2:4638528-4638547 | None:intergenic | 40.0% | |
| GGACTTGCCCACATATAATT+TGG | + | chr7.2:4637553-4637572 | None:intergenic | 40.0% | |
| GTTAAGCTGTGTATCCAAAC+AGG | - | chr7.2:4636477-4636496 | MS.gene050753:intron | 40.0% | |
| TAATGGAACACATGCATGCA+TGG | + | chr7.2:4638707-4638726 | None:intergenic | 40.0% | |
| TCAGAGAGCTAGACAGAAAT+GGG | + | chr7.2:4639352-4639371 | None:intergenic | 40.0% | |
| TGAACGTTCTTCTCTCAAAC+AGG | - | chr7.2:4638148-4638167 | MS.gene050753:intron | 40.0% | |
| TGACAGAACATCAAAGTGTG+TGG | + | chr7.2:4639137-4639156 | None:intergenic | 40.0% | |
| TGCAACTTATGTAGCACCAT+TGG | - | chr7.2:4637895-4637914 | MS.gene050753:intron | 40.0% | |
| TGGAAAACGGTGAACTTTCA+TGG | + | chr7.2:4637067-4637086 | None:intergenic | 40.0% | |
| TGGAATCAGTTGGGACATTA+GGG | + | chr7.2:4638321-4638340 | None:intergenic | 40.0% | |
| TTGCATCTCATAGTCTGATC+TGG | - | chr7.2:4638484-4638503 | MS.gene050753:intron | 40.0% | |
| TTTGTGATAAACGCAGGTTC+AGG | - | chr7.2:4638782-4638801 | MS.gene050753:intron | 40.0% | |
| ! | ATACCTGAGTTTTTCCCAAG+CGG | + | chr7.2:4636392-4636411 | None:intergenic | 40.0% |
| !! | AAAGCTTTGGCTGTGTTTTG+TGG | - | chr7.2:4637619-4637638 | MS.gene050753:CDS | 40.0% |
| !! | AAGCTTTGGCTGTGTTTTGT+GGG | - | chr7.2:4637620-4637639 | MS.gene050753:CDS | 40.0% |
| !! | GTTGTAGACTTTTAGGTCGT+GGG | - | chr7.2:4636628-4636647 | MS.gene050753:intron | 40.0% |
| !! | TGAACAAATCTTGGTGCTAG+TGG | + | chr7.2:4636664-4636683 | None:intergenic | 40.0% |
| !! | TGATTTTGACAACCTTGCCA+AGG | - | chr7.2:4637846-4637865 | MS.gene050753:intron | 40.0% |
| !! | TGATTTTGACAACCTTGCGA+AGG | - | chr7.2:4637346-4637365 | MS.gene050753:intron | 40.0% |
| !! | TGTTGTAGACTTTTAGGTCG+TGG | - | chr7.2:4636627-4636646 | MS.gene050753:intron | 40.0% |
| !! | TTGTAGACTTTTAGGTCGTG+GGG | - | chr7.2:4636629-4636648 | MS.gene050753:intron | 40.0% |
| !!! | GTATGTTTTAAGGCTCTGTC+TGG | - | chr7.2:4636408-4636427 | MS.gene050753:intron | 40.0% |
| AAAACCTCCAAACCCCATCA+AGG | + | chr7.2:4639560-4639579 | None:intergenic | 45.0% | |
| AAGAAAGAAAGCGACTGCGT+CGG | - | chr7.2:4639231-4639250 | MS.gene050753:CDS | 45.0% | |
| AATACCTGTGGACTTGTCAG+TGG | - | chr7.2:4637005-4637024 | MS.gene050753:intron | 45.0% | |
| ACATTCACTTAGGCCCTGTT+TGG | + | chr7.2:4636494-4636513 | None:intergenic | 45.0% | |
| ACCTTGCCAAGGATCCTATA+TGG | - | chr7.2:4637857-4637876 | MS.gene050753:intron | 45.0% | |
| AGAAATGGGAGGAGAGAGAA+AGG | + | chr7.2:4639338-4639357 | None:intergenic | 45.0% | |
| AGCGAGTGATCTTTCACCAT+TGG | - | chr7.2:4637584-4637603 | MS.gene050753:intron | 45.0% | |
| AGCTGAATGGTGCAGATTCA+AGG | + | chr7.2:4638599-4638618 | None:intergenic | 45.0% | |
| ATACCTGTGGACTTGTCAGT+GGG | - | chr7.2:4637006-4637025 | MS.gene050753:intron | 45.0% | |
| ATGGGATGAGAAGAGAGGAA+GGG | + | chr7.2:4638349-4638368 | None:intergenic | 45.0% | |
| ATGGTGAAAGATCACTCGCT+TGG | + | chr7.2:4637584-4637603 | None:intergenic | 45.0% | |
| ATGTAGCTGATCCCACTTAG+TGG | - | chr7.2:4636532-4636551 | MS.gene050753:intron | 45.0% | |
| CAAGCCATATCCCACTAAGT+GGG | + | chr7.2:4636546-4636565 | None:intergenic | 45.0% | |
| CCAAATTCCTGTGGACTTGT+CGG | - | chr7.2:4637471-4637490 | MS.gene050753:CDS | 45.0% | |
| CTAGGAAGCTTTACAGAGCA+AGG | - | chr7.2:4638837-4638856 | MS.gene050753:intron | 45.0% | |
| CTCTCATCAGTACAGCTGAA+CGG | + | chr7.2:4636689-4636708 | None:intergenic | 45.0% | |
| CTGAAGAAACGGAAAGACCT+AGG | - | chr7.2:4638819-4638838 | MS.gene050753:intron | 45.0% | |
| CTGACAAGTCCACAGGTATT+TGG | + | chr7.2:4637005-4637024 | None:intergenic | 45.0% | |
| CTGGAATCAGTTGGGACATT+AGG | + | chr7.2:4638322-4638341 | None:intergenic | 45.0% | |
| CTTGCTCTGTAAAGCTTCCT+AGG | + | chr7.2:4638839-4638858 | None:intergenic | 45.0% | |
| CTTTGTGAATGCTCTGCCAA+TGG | + | chr7.2:4637603-4637622 | None:intergenic | 45.0% | |
| GAACATCAAAGTGTGTGGAC+TGG | + | chr7.2:4639132-4639151 | None:intergenic | 45.0% | |
| GAAGGACTCAGCAAACTACT+TGG | - | chr7.2:4637974-4637993 | MS.gene050753:intron | 45.0% | |
| GAAGGCTGTCTTAAGCTGAA+TGG | + | chr7.2:4638612-4638631 | None:intergenic | 45.0% | |
| GATAAACGCAGGTTCAGGAA+CGG | - | chr7.2:4638787-4638806 | MS.gene050753:intron | 45.0% | |
| GATGTTCTGTCACCTTAGTG+TGG | - | chr7.2:4639145-4639164 | MS.gene050753:intron | 45.0% | |
| GGCCTTGCCCACATATAATT+TGG | + | chr7.2:4637087-4637106 | None:intergenic | 45.0% | |
| TATGGATGGGATGAGAAGAG+AGG | + | chr7.2:4638354-4638373 | None:intergenic | 45.0% | |
| TCAGGCTATCTGCTGCTATA+AGG | - | chr7.2:4636442-4636461 | MS.gene050753:intron | 45.0% | |
| TCCATATAGGATCCTTGGCA+AGG | + | chr7.2:4637861-4637880 | None:intergenic | 45.0% | |
| TGAACTTACACTGTTGCTGG+TGG | + | chr7.2:4636023-4636042 | None:intergenic | 45.0% | |
| TGATCCCACTTAGTGGGATA+TGG | - | chr7.2:4636539-4636558 | MS.gene050753:intron | 45.0% | |
| TGGGCACACTCTAATTGTCT+AGG | + | chr7.2:4638296-4638315 | None:intergenic | 45.0% | |
| TGTAGCTGATCCCACTTAGT+GGG | - | chr7.2:4636533-4636552 | MS.gene050753:intron | 45.0% | |
| ! | AATTGCCGTCACTTTGCTCA+TGG | - | chr7.2:4638072-4638091 | MS.gene050753:intron | 45.0% |
| ! | GCAGAGCATTCACAAAGCTT+TGG | - | chr7.2:4637606-4637625 | MS.gene050753:CDS | 45.0% |
| ! | TACCTGAGTTTTTCCCAAGC+GGG | + | chr7.2:4636391-4636410 | None:intergenic | 45.0% |
| ! | TGATGGGGTTTGGAGGTTTT+CGG | - | chr7.2:4639560-4639579 | MS.gene050753:intron | 45.0% |
| ! | TTTTTCCCAAGCGGGATTCA+AGG | + | chr7.2:4636383-4636402 | None:intergenic | 45.0% |
| !! | ACAAATCTTGGTGCTAGTGG+AGG | + | chr7.2:4636661-4636680 | None:intergenic | 45.0% |
| !! | ATCACTCGCTTGGTCTTTTC+GGG | + | chr7.2:4637574-4637593 | None:intergenic | 45.0% |
| !! | GATCACTCGCTTGGTCTTTT+CGG | + | chr7.2:4637575-4637594 | None:intergenic | 45.0% |
| !! | TCAAGTACCTGTTGGCTTAG+TGG | + | chr7.2:4636751-4636770 | None:intergenic | 45.0% |
| !! | TTCTTTTGTTGGGGAGGTGT+TGG | - | chr7.2:4636882-4636901 | MS.gene050753:intron | 45.0% |
| !!! | TCTTTTGTTGGGGAGGTGTT+GGG | - | chr7.2:4636883-4636902 | MS.gene050753:intron | 45.0% |
| AAGGGTAGGCTGGAATCAGT+TGG | + | chr7.2:4638331-4638350 | None:intergenic | 50.0% | |
| AATTCCTGTGGACTTGTCGG+TGG | - | chr7.2:4637474-4637493 | MS.gene050753:CDS | 50.0% | |
| AGAAAGAAAGCGACTGCGTC+GGG | - | chr7.2:4639232-4639251 | MS.gene050753:CDS | 50.0% | |
| AGGGTAGGCTGGAATCAGTT+GGG | + | chr7.2:4638330-4638349 | None:intergenic | 50.0% | |
| AGTAGACCTTGAATCCCGCT+TGG | - | chr7.2:4636374-4636393 | MS.gene050753:CDS | 50.0% | |
| AGTTTGTGAGTGCGTGGTGA+AGG | - | chr7.2:4637956-4637975 | MS.gene050753:intron | 50.0% | |
| ATAAGATGAGGCCCAAGAGG+AGG | + | chr7.2:4638516-4638535 | None:intergenic | 50.0% | |
| ATCCCGCTTGGGAAAAACTC+AGG | - | chr7.2:4636386-4636405 | MS.gene050753:CDS | 50.0% | |
| ATTCCTGTGGACTTGTCGGT+GGG | - | chr7.2:4637475-4637494 | MS.gene050753:intron | 50.0% | |
| CAGGGCCTAAGTGAATGTCA+AGG | - | chr7.2:4636496-4636515 | MS.gene050753:intron | 50.0% | |
| CAGTTGGGACATTAGGGACT+GGG | + | chr7.2:4638315-4638334 | None:intergenic | 50.0% | |
| CCAAGCCATATCCCACTAAG+TGG | + | chr7.2:4636547-4636566 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATATGGCT+TGG | - | chr7.2:4636544-4636563 | MS.gene050753:intron | 50.0% | |
| CCGACAAGTCCACAGGAATT+TGG | + | chr7.2:4637474-4637493 | None:intergenic | 50.0% | |
| CCTATAAGATGAGGCCCAAG+AGG | + | chr7.2:4638519-4638538 | None:intergenic | 50.0% | |
| CCTCTTGGGCCTCATCTTAT+AGG | - | chr7.2:4638516-4638535 | MS.gene050753:intron | 50.0% | |
| GAATGTGTTGTCAACCCCAG+CGG | + | chr7.2:4636138-4636157 | None:intergenic | 50.0% | |
| GAGAGCTAGACAGAAATGGG+AGG | + | chr7.2:4639349-4639368 | None:intergenic | 50.0% | |
| GATGAGAAGAGAGGAAGGGT+AGG | + | chr7.2:4638345-4638364 | None:intergenic | 50.0% | |
| GATGGGATGAGAAGAGAGGA+AGG | + | chr7.2:4638350-4638369 | None:intergenic | 50.0% | |
| GCAACGTCAGGATCCATTTC+AGG | + | chr7.2:4639535-4639554 | None:intergenic | 50.0% | |
| GTAGACCTTGAATCCCGCTT+GGG | - | chr7.2:4636375-4636394 | MS.gene050753:CDS | 50.0% | |
| TAAGATGAGGCCCAAGAGGA+GGG | + | chr7.2:4638515-4638534 | None:intergenic | 50.0% | |
| TAGAGTAGAGAGGACGTGTG+TGG | + | chr7.2:4638412-4638431 | None:intergenic | 50.0% | |
| TCAGTTGGGACATTAGGGAC+TGG | + | chr7.2:4638316-4638335 | None:intergenic | 50.0% | |
| TCCTAGAGGCTAGAGTAGAG+AGG | + | chr7.2:4638422-4638441 | None:intergenic | 50.0% | |
| TCCTCTCTACTCTAGCCTCT+AGG | - | chr7.2:4638418-4638437 | MS.gene050753:intron | 50.0% | |
| TCTTCTCTAGCCCTCCTCTT+GGG | - | chr7.2:4638541-4638560 | MS.gene050753:intron | 50.0% | |
| TTCAATGGCTTCCTCTGCAC+TGG | + | chr7.2:4636339-4636358 | None:intergenic | 50.0% | |
| TTCTTCTCTAGCCCTCCTCT+TGG | - | chr7.2:4638540-4638559 | MS.gene050753:intron | 50.0% | |
| ! | AGAGAGAGGGAGAGAGCATA+TGG | + | chr7.2:4638372-4638391 | None:intergenic | 50.0% |
| ! | AGAGGGAGAGAGCATATGGA+TGG | + | chr7.2:4638368-4638387 | None:intergenic | 50.0% |
| ! | GAGGGAGAGAGCATATGGAT+GGG | + | chr7.2:4638367-4638386 | None:intergenic | 50.0% |
| ! | TTCCACAGATCAGAGAGCGT+TGG | - | chr7.2:4638109-4638128 | MS.gene050753:intron | 50.0% |
| !! | TCCACAGATCAGAGAGCGTT+GGG | - | chr7.2:4638110-4638129 | MS.gene050753:intron | 50.0% |
| !! | TGTTGGCTTAGTGGTGCAAC+CGG | + | chr7.2:4636742-4636761 | None:intergenic | 50.0% |
| AAGATGAGGCCCAAGAGGAG+GGG | + | chr7.2:4638514-4638533 | None:intergenic | 55.0% | |
| AATGGCTTCCTCTGCACTGG+AGG | + | chr7.2:4636336-4636355 | None:intergenic | 55.0% | |
| AGAAGAGAGGAAGGGTAGGC+TGG | + | chr7.2:4638341-4638360 | None:intergenic | 55.0% | |
| AGTCGGTTGAATTAGGCCGC+TGG | - | chr7.2:4636119-4636138 | MS.gene050753:intron | 55.0% | |
| ATGAGATGAGGCCCAAGAGG+AGG | + | chr7.2:4638555-4638574 | None:intergenic | 55.0% | |
| CCTATGAGATGAGGCCCAAG+AGG | + | chr7.2:4638558-4638577 | None:intergenic | 55.0% | |
| CCTCTTGGGCCTCATCTCAT+AGG | - | chr7.2:4638555-4638574 | MS.gene050753:intron | 55.0% | |
| CCTGACGTTGCTGCCTTGAT+GGG | - | chr7.2:4639544-4639563 | MS.gene050753:intron | 55.0% | |
| CTGACGTTGCTGCCTTGATG+GGG | - | chr7.2:4639545-4639564 | MS.gene050753:intron | 55.0% | |
| CTGCTCAGTTTGTGAGTGCG+TGG | - | chr7.2:4637950-4637969 | MS.gene050753:intron | 55.0% | |
| GGGTGTGACTCGTTTCCTAG+AGG | + | chr7.2:4638436-4638455 | None:intergenic | 55.0% | |
| GGTTGCACCACTAAGCCAAC+AGG | - | chr7.2:4636741-4636760 | MS.gene050753:intron | 55.0% | |
| GTACCCACTGACAAGTCCAC+AGG | + | chr7.2:4637012-4637031 | None:intergenic | 55.0% | |
| GTCGGTTGAATTAGGCCGCT+GGG | - | chr7.2:4636120-4636139 | MS.gene050753:intron | 55.0% | |
| GTTGCTGCCTTGATGGGGTT+TGG | - | chr7.2:4639550-4639569 | MS.gene050753:intron | 55.0% | |
| TCCTGACGTTGCTGCCTTGA+TGG | - | chr7.2:4639543-4639562 | MS.gene050753:intron | 55.0% | |
| TCGGTTGAATTAGGCCGCTG+GGG | - | chr7.2:4636121-4636140 | MS.gene050753:intron | 55.0% | |
| TGAGATGAGGCCCAAGAGGA+GGG | + | chr7.2:4638554-4638573 | None:intergenic | 55.0% | |
| TGCACTGTGGGAGAGAGAGA+GGG | + | chr7.2:4638385-4638404 | None:intergenic | 55.0% | |
| !! | GGGGAGGTGTTGGGACTTAT+GGG | - | chr7.2:4636892-4636911 | MS.gene050753:intron | 55.0% |
| !! | TGGGGAGGTGTTGGGACTTA+TGG | - | chr7.2:4636891-4636910 | MS.gene050753:intron | 55.0% |
| CCCATCAAGGCAGCAACGTC+AGG | + | chr7.2:4639547-4639566 | None:intergenic | 60.0% | |
| GCCCAACGCTCTCTGATCTG+TGG | + | chr7.2:4638114-4638133 | None:intergenic | 60.0% | |
| GCTGCCTTGATGGGGTTTGG+AGG | - | chr7.2:4639553-4639572 | MS.gene050753:intron | 60.0% | |
| GTACCCACCGACAAGTCCAC+AGG | + | chr7.2:4637481-4637500 | None:intergenic | 60.0% | |
| GTAGAGAGGACGTGTGTGGC+AGG | + | chr7.2:4638408-4638427 | None:intergenic | 60.0% | |
| GTAGAGGTCCTCCAGTGCAG+AGG | - | chr7.2:4636325-4636344 | MS.gene050753:intron | 60.0% | |
| GTGCACTGTGGGAGAGAGAG+AGG | + | chr7.2:4638386-4638405 | None:intergenic | 60.0% | |
| GTGTGTGGCAGGTGCACTGT+GGG | + | chr7.2:4638397-4638416 | None:intergenic | 60.0% | |
| TGCTCGTGAGCGTGAGAGAC+AGG | - | chr7.2:4636193-4636212 | MS.gene050753:intron | 60.0% | |
| ATCTGGCGCACCCCTCCTCT+TGG | - | chr7.2:4638501-4638520 | MS.gene050753:intron | 65.0% | |
| CGTGTGTGGCAGGTGCACTG+TGG | + | chr7.2:4638398-4638417 | None:intergenic | 65.0% | |
| TCTGGCGCACCCCTCCTCTT+GGG | - | chr7.2:4638502-4638521 | MS.gene050753:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 4636010 | 4639600 | 4636010 | ID=MS.gene050753 |
| chr7.2 | mRNA | 4636010 | 4639600 | 4636010 | ID=MS.gene050753.t1;Parent=MS.gene050753 |
| chr7.2 | exon | 4639577 | 4639600 | 4639577 | ID=MS.gene050753.t1.exon1;Parent=MS.gene050753.t1 |
| chr7.2 | CDS | 4639577 | 4639600 | 4639577 | ID=cds.MS.gene050753.t1;Parent=MS.gene050753.t1 |
| chr7.2 | exon | 4639371 | 4639476 | 4639371 | ID=MS.gene050753.t1.exon2;Parent=MS.gene050753.t1 |
| chr7.2 | CDS | 4639371 | 4639476 | 4639371 | ID=cds.MS.gene050753.t1;Parent=MS.gene050753.t1 |
| chr7.2 | exon | 4639203 | 4639285 | 4639203 | ID=MS.gene050753.t1.exon3;Parent=MS.gene050753.t1 |
| chr7.2 | CDS | 4639203 | 4639285 | 4639203 | ID=cds.MS.gene050753.t1;Parent=MS.gene050753.t1 |
| chr7.2 | exon | 4638848 | 4638880 | 4638848 | ID=MS.gene050753.t1.exon4;Parent=MS.gene050753.t1 |
| chr7.2 | CDS | 4638848 | 4638880 | 4638848 | ID=cds.MS.gene050753.t1;Parent=MS.gene050753.t1 |
| chr7.2 | exon | 4637593 | 4637671 | 4637593 | ID=MS.gene050753.t1.exon5;Parent=MS.gene050753.t1 |
| chr7.2 | CDS | 4637593 | 4637671 | 4637593 | ID=cds.MS.gene050753.t1;Parent=MS.gene050753.t1 |
| chr7.2 | exon | 4637441 | 4637493 | 4637441 | ID=MS.gene050753.t1.exon6;Parent=MS.gene050753.t1 |
| chr7.2 | CDS | 4637441 | 4637493 | 4637441 | ID=cds.MS.gene050753.t1;Parent=MS.gene050753.t1 |
| chr7.2 | exon | 4636752 | 4636812 | 4636752 | ID=MS.gene050753.t1.exon7;Parent=MS.gene050753.t1 |
| chr7.2 | CDS | 4636752 | 4636812 | 4636752 | ID=cds.MS.gene050753.t1;Parent=MS.gene050753.t1 |
| chr7.2 | exon | 4636339 | 4636418 | 4636339 | ID=MS.gene050753.t1.exon8;Parent=MS.gene050753.t1 |
| chr7.2 | CDS | 4636339 | 4636418 | 4636339 | ID=cds.MS.gene050753.t1;Parent=MS.gene050753.t1 |
| chr7.2 | exon | 4636010 | 4636099 | 4636010 | ID=MS.gene050753.t1.exon9;Parent=MS.gene050753.t1 |
| chr7.2 | CDS | 4636010 | 4636099 | 4636010 | ID=cds.MS.gene050753.t1;Parent=MS.gene050753.t1 |
| Gene Sequence |
| Protein sequence |
