Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050957.t1 | XP_013450454.1 | 100 | 202 | 0 | 0 | 1 | 202 | 1 | 202 | 4.00E-77 | 297.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050957.t1 | Q96NC0 | 56.1 | 196 | 83 | 3 | 8 | 201 | 3 | 197 | 4.3e-32 | 139.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050957.t1 | A0A072U456 | 100.0 | 202 | 0 | 0 | 1 | 202 | 1 | 202 | 2.9e-77 | 297.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene050957.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050753 | MS.gene050957 | 0.996029 | 1.40E-222 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050957.t1 | MTR_7g112060 | 100.000 | 202 | 0 | 0 | 1 | 202 | 1 | 202 | 3.03e-149 | 412 |
| MS.gene050957.t1 | MTR_7g112060 | 99.505 | 202 | 0 | 1 | 1 | 202 | 1 | 201 | 8.88e-147 | 406 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050957.t1 | AT3G05760 | 72.000 | 200 | 54 | 1 | 4 | 201 | 2 | 201 | 7.17e-95 | 275 |
| MS.gene050957.t1 | AT3G05760 | 79.021 | 143 | 30 | 0 | 5 | 147 | 3 | 145 | 6.45e-83 | 243 |
Find 41 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTGACGTTGCTGCCTTGA+TGG | 0.273991 | 7.1:-3851490 | MS.gene050957:CDS |
| AACTACTTGGATCATATTAA+TGG | 0.276389 | 7.1:-3853046 | MS.gene050957:CDS |
| GCAACGTCAGGATCCATTTC+AGG | 0.287879 | 7.1:+3851501 | None:intergenic |
| GTTGCTGCCTTGATGGGGTT+TGG | 0.376323 | 7.1:-3851483 | MS.gene050957:CDS |
| CCTGACGTTGCTGCCTTGAT+GGG | 0.380236 | 7.1:-3851489 | MS.gene050957:CDS |
| AGAAAGAAAGCGACTGCGTC+GGG | 0.394814 | 7.1:-3851801 | MS.gene050957:CDS |
| TCATAATCTCTATGTTTCAA+TGG | 0.398737 | 7.1:+3854682 | None:intergenic |
| AATTGAACTTACACTGTTGC+TGG | 0.398841 | 7.1:+3855009 | None:intergenic |
| CTTGCTCTGTAAAGCTTCCT+AGG | 0.401772 | 7.1:+3852197 | None:intergenic |
| TTCAATGGCTTCCTCTGCAC+TGG | 0.417126 | 7.1:+3854697 | None:intergenic |
| TCAAGTACCTGTTGGCTTAG+TGG | 0.422359 | 7.1:+3854285 | None:intergenic |
| AGCAGTAGAAGAACCTGAAA+TGG | 0.433262 | 7.1:-3851514 | MS.gene050957:CDS |
| TCCACAGATCAGAGAGCGTT+GGG | 0.434413 | 7.1:-3852923 | MS.gene050957:intron |
| ATTCGGTTGAATTAGGCCGC+TGG | 0.437263 | 7.1:-3854914 | MS.gene050957:intron |
| CCCATCAAGGCAGCAACGTC+AGG | 0.440366 | 7.1:+3851489 | None:intergenic |
| TGCTCGTGAGCGTGAGAGAC+AGG | 0.449139 | 7.1:-3854840 | MS.gene050957:CDS |
| TGAACGTTCTTCTCTCAAAC+AGG | 0.469716 | 7.1:-3852885 | MS.gene050957:intron |
| TTCGGTTGAATTAGGCCGCT+GGG | 0.484855 | 7.1:-3854913 | MS.gene050957:intron |
| AATGGCTTCCTCTGCACTGG+AGG | 0.506607 | 7.1:+3854700 | None:intergenic |
| GAAGGACTCAGCAAACTACT+TGG | 0.508744 | 7.1:-3853059 | MS.gene050957:CDS |
| GGTTGCACCACTAAGCCAAC+AGG | 0.522528 | 7.1:-3854292 | MS.gene050957:intron |
| GAAGAGAAAGCAAAACCTAA+AGG | 0.524374 | 7.1:-3854815 | MS.gene050957:intron |
| AAGAAAGAAAGCGACTGCGT+CGG | 0.529732 | 7.1:-3851802 | MS.gene050957:CDS |
| GGTTTGAAAATCTGAAGAAA+CGG | 0.530251 | 7.1:-3852225 | MS.gene050957:CDS |
| TGTTGGCTTAGTGGTGCAAC+CGG | 0.533524 | 7.1:+3854294 | None:intergenic |
| TTCCACAGATCAGAGAGCGT+TGG | 0.536771 | 7.1:-3852924 | MS.gene050957:intron |
| GTAGACCTTGAATCCCGCTT+GGG | 0.547442 | 7.1:-3854658 | MS.gene050957:CDS |
| GCTGCCTTGATGGGGTTTGG+AGG | 0.549348 | 7.1:-3851480 | MS.gene050957:CDS |
| AGTAGACCTTGAATCCCGCT+TGG | 0.550337 | 7.1:-3854659 | MS.gene050957:CDS |
| AGTTTGTGAGTGCGTGGTGA+AGG | 0.552418 | 7.1:-3853077 | MS.gene050957:CDS |
| CTAGGAAGCTTTACAGAGCA+AGG | 0.559657 | 7.1:-3852196 | MS.gene050957:intron |
| CTGACGTTGCTGCCTTGATG+GGG | 0.560761 | 7.1:-3851488 | MS.gene050957:CDS |
| CTGAAGAAACGGAAAGACCT+AGG | 0.564143 | 7.1:-3852214 | MS.gene050957:CDS |
| ATTAAAACAGCAACAAGAAG+AGG | 0.569720 | 7.1:-3851825 | MS.gene050957:CDS |
| AAAACCTCCAAACCCCATCA+AGG | 0.581455 | 7.1:+3851476 | None:intergenic |
| GTAGAGGTCCTCCAGTGCAG+AGG | 0.618289 | 7.1:-3854708 | MS.gene050957:CDS |
| CTGCTCAGTTTGTGAGTGCG+TGG | 0.632386 | 7.1:-3853083 | MS.gene050957:CDS |
| GATGAACGCAGGTTCAGGAA+CGG | 0.633829 | 7.1:-3852246 | MS.gene050957:intron |
| TCGGTTGAATTAGGCCGCTG+GGG | 0.650254 | 7.1:-3854912 | MS.gene050957:intron |
| TGAACTTACACTGTTGCTGG+TGG | 0.666094 | 7.1:+3855012 | None:intergenic |
| GAATGTGTTGTCAACCCCAG+CGG | 0.671454 | 7.1:+3854898 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAACTTCATATTATATATAT+AGG | - | chr7.1:3851747-3851766 | MS.gene050957:intron | 10.0% |
| !! | TTCAAATTAATAATTTGATT+CGG | - | chr7.1:3851546-3851565 | MS.gene050957:intron | 10.0% |
| !! | AACTTACCTAATAATAATTA+GGG | + | chr7.1:3853910-3853929 | None:intergenic | 15.0% |
| !! | ATATACATTATTAAATCCAA+TGG | + | chr7.1:3853358-3853377 | None:intergenic | 15.0% |
| !!! | AAATTTTAGAAATGATCTTA+GGG | - | chr7.1:3852699-3852718 | MS.gene050957:intron | 15.0% |
| !!! | ATTTTGATATTTACAGATTT+GGG | - | chr7.1:3853664-3853683 | MS.gene050957:intron | 15.0% |
| !!! | TAAATTTTAGAAATGATCTT+AGG | - | chr7.1:3852698-3852717 | MS.gene050957:intron | 15.0% |
| !!! | TGTTTATTTATTTCATTTTC+TGG | + | chr7.1:3853634-3853653 | None:intergenic | 15.0% |
| !!! | TTGATCTATAACTAAAATTT+TGG | - | chr7.1:3854427-3854446 | MS.gene050957:intron | 15.0% |
| !!! | TTTATGTTGGTTAAAAATAT+GGG | - | chr7.1:3852864-3852883 | MS.gene050957:intron | 15.0% |
| !!! | TTTTATGTTGGTTAAAAATA+TGG | - | chr7.1:3852863-3852882 | MS.gene050957:intron | 15.0% |
| !! | AACGAAAAGATTAATCATAT+AGG | + | chr7.1:3852818-3852837 | None:intergenic | 20.0% |
| !! | AATATTGTAATGTCTAGAAA+AGG | + | chr7.1:3852625-3852644 | None:intergenic | 20.0% |
| !! | ACTTACCTAATAATAATTAG+GGG | + | chr7.1:3853909-3853928 | None:intergenic | 20.0% |
| !! | ATATTGTAATGTCTAGAAAA+GGG | + | chr7.1:3852624-3852643 | None:intergenic | 20.0% |
| !! | ATCAAAAAGATTATCCATAT+AGG | + | chr7.1:3853318-3853337 | None:intergenic | 20.0% |
| !! | CAAATCTGTAAATATCAAAA+TGG | + | chr7.1:3853665-3853684 | None:intergenic | 20.0% |
| !! | CAACTTACCTAATAATAATT+AGG | + | chr7.1:3853911-3853930 | None:intergenic | 20.0% |
| !! | CATAACTGTGTTATATATTA+GGG | - | chr7.1:3852726-3852745 | MS.gene050957:intron | 20.0% |
| !! | CATATTATATATATAGGTAG+AGG | - | chr7.1:3851753-3851772 | MS.gene050957:intron | 20.0% |
| !! | GATTTAATAATGTATATTGC+AGG | - | chr7.1:3853361-3853380 | MS.gene050957:intron | 20.0% |
| !! | TCAATTAGAATACAAAATCT+TGG | - | chr7.1:3854750-3854769 | MS.gene050957:intron | 20.0% |
| !! | TCATAACTGTGTTATATATT+AGG | - | chr7.1:3852725-3852744 | MS.gene050957:intron | 20.0% |
| !! | TTAACCAACATAAAATCTAA+AGG | + | chr7.1:3852858-3852877 | None:intergenic | 20.0% |
| !!! | AACTTTGCTTGTTAAAAATA+TGG | - | chr7.1:3852394-3852413 | MS.gene050957:intron | 20.0% |
| !!! | ACTTTGCTTGTTAAAAATAT+GGG | - | chr7.1:3852395-3852414 | MS.gene050957:intron | 20.0% |
| !!! | ATTTTATGTTGTAGACTTTT+AGG | - | chr7.1:3852065-3852084 | MS.gene050957:intron | 20.0% |
| !!! | CATTTTGATATTTACAGATT+TGG | - | chr7.1:3853663-3853682 | MS.gene050957:intron | 20.0% |
| !!! | TCTTTTTCCAAATTATATGT+GGG | - | chr7.1:3852987-3853006 | MS.gene050957:intron | 20.0% |
| !!! | TTTTTTCAGATTTTGATGAA+AGG | - | chr7.1:3854627-3854646 | MS.gene050957:intron | 20.0% |
| ! | AAAATTCAATTTCCACACTA+AGG | + | chr7.1:3854604-3854623 | None:intergenic | 25.0% |
| ! | AAACCATCGACAATAAATAT+TGG | + | chr7.1:3851502-3851521 | None:intergenic | 25.0% |
| ! | AACCATCGACAATAAATATT+GGG | + | chr7.1:3851501-3851520 | None:intergenic | 25.0% |
| ! | AACTACTTGGATCATATTAA+TGG | - | chr7.1:3853431-3853450 | MS.gene050957:intron | 25.0% |
| ! | AAGAAACTGTAATCTGAATA+CGG | + | chr7.1:3854726-3854745 | None:intergenic | 25.0% |
| ! | AATAAAAATCAAGTACCTGT+TGG | + | chr7.1:3852203-3852222 | None:intergenic | 25.0% |
| ! | AATAAAGCTTCTACAATTTC+AGG | + | chr7.1:3854383-3854402 | None:intergenic | 25.0% |
| ! | ACTTTAATGTCCATTATTCT+TGG | - | chr7.1:3854357-3854376 | MS.gene050957:intron | 25.0% |
| ! | ATATTGCAATGTCTAGAAAA+AGG | + | chr7.1:3853124-3853143 | None:intergenic | 25.0% |
| ! | ATTAGAATTCATAGACTAGA+AGG | + | chr7.1:3854074-3854093 | None:intergenic | 25.0% |
| ! | CATAACTCTGTTATATATCA+GGG | - | chr7.1:3853226-3853245 | MS.gene050957:intron | 25.0% |
| ! | CATGTTGAAATTTCAAATGT+TGG | - | chr7.1:3854539-3854558 | MS.gene050957:intron | 25.0% |
| ! | TATTGCAATGTCTAGAAAAA+GGG | + | chr7.1:3853123-3853142 | None:intergenic | 25.0% |
| ! | TCATAACTCTGTTATATATC+AGG | - | chr7.1:3853225-3853244 | MS.gene050957:intron | 25.0% |
| ! | TCATAATCTCTATGTTTCAA+TGG | + | chr7.1:3851798-3851817 | None:intergenic | 25.0% |
| ! | TTCTAGTCTATGAATTCTAA+TGG | - | chr7.1:3854073-3854092 | MS.gene050957:intron | 25.0% |
| !! | AAAAACTCAGGTATGTTTTA+AGG | - | chr7.1:3851842-3851861 | MS.gene050957:CDS | 25.0% |
| !! | AGTACCTTTAGATTTTATGT+TGG | - | chr7.1:3852851-3852870 | MS.gene050957:intron | 25.0% |
| !! | CTCTTTTTCCAAATTATATG+TGG | - | chr7.1:3852986-3853005 | MS.gene050957:intron | 25.0% |
| !! | TGTGAAATTAGTTTACCTTT+AGG | + | chr7.1:3851680-3851699 | None:intergenic | 25.0% |
| !!! | ATAGCCTTTATTTCTTTTGT+TGG | - | chr7.1:3852315-3852334 | MS.gene050957:intron | 25.0% |
| !!! | ATCACTTTTAGAAAGATAGA+TGG | + | chr7.1:3854860-3854879 | None:intergenic | 25.0% |
| !!! | GTATTTGTGTACTTTGAAAT+TGG | - | chr7.1:3852225-3852244 | MS.gene050957:CDS | 25.0% |
| !!! | TAATTTGATTCGGTTGAATT+AGG | - | chr7.1:3851556-3851575 | MS.gene050957:intron | 25.0% |
| !!! | TAGCCTTTATTTCTTTTGTT+GGG | - | chr7.1:3852316-3852335 | MS.gene050957:intron | 25.0% |
| !!! | TATGTTTGCTTTTTTGAGTT+TGG | - | chr7.1:3852028-3852047 | MS.gene050957:intron | 25.0% |
| !!! | TCGTATTTTTGAATACTTCT+AGG | - | chr7.1:3854491-3854510 | MS.gene050957:intron | 25.0% |
| AATAATAATTAGGGGAGAGA+AGG | + | chr7.1:3853901-3853920 | None:intergenic | 30.0% | |
| AATCTCCTTAATTGAAAGGT+CGG | + | chr7.1:3854409-3854428 | None:intergenic | 30.0% | |
| AGAAACCAAATGACACATAA+TGG | + | chr7.1:3854168-3854187 | None:intergenic | 30.0% | |
| AGTGAATGTCAAGGATTTAT+AGG | - | chr7.1:3851949-3851968 | MS.gene050957:intron | 30.0% | |
| ATAATAATTAGGGGAGAGAA+GGG | + | chr7.1:3853900-3853919 | None:intergenic | 30.0% | |
| ATAGGTTTCTTCTCTAGTAT+GGG | - | chr7.1:3854017-3854036 | MS.gene050957:intron | 30.0% | |
| ATCCCAATATTTATTGTCGA+TGG | - | chr7.1:3851496-3851515 | MS.gene050957:CDS | 30.0% | |
| ATTAAAACAGCAACAAGAAG+AGG | - | chr7.1:3854652-3854671 | MS.gene050957:CDS | 30.0% | |
| CAACTCTCTTCTATTATCTT+AGG | + | chr7.1:3854312-3854331 | None:intergenic | 30.0% | |
| CCCACATATAATTTGGAAAA+CGG | + | chr7.1:3852524-3852543 | None:intergenic | 30.0% | |
| CTAAGATAATAGAAGAGAGT+TGG | - | chr7.1:3854310-3854329 | MS.gene050957:intron | 30.0% | |
| GATCAATCTCCTTAATTGAA+AGG | + | chr7.1:3854413-3854432 | None:intergenic | 30.0% | |
| GGTTTGAAAATCTGAAGAAA+CGG | - | chr7.1:3854252-3854271 | MS.gene050957:intron | 30.0% | |
| TAAATCCTTGACATTCACTT+AGG | + | chr7.1:3851948-3851967 | None:intergenic | 30.0% | |
| TAATAATGTATATTGCAGGC+TGG | - | chr7.1:3853365-3853384 | MS.gene050957:intron | 30.0% | |
| TCAAGCAATGTCAAAGATAA+TGG | + | chr7.1:3854104-3854123 | None:intergenic | 30.0% | |
| TCGGGAAAAGAAAAAAGAAA+AGG | - | chr7.1:3854694-3854713 | MS.gene050957:CDS | 30.0% | |
| TCTCTCCCCTAATTATTATT+AGG | - | chr7.1:3853901-3853920 | MS.gene050957:intron | 30.0% | |
| TTGGAAAAAGAGAACTTTCA+GGG | + | chr7.1:3852978-3852997 | None:intergenic | 30.0% | |
| TTGTGATATTAATTGTCTCG+TGG | - | chr7.1:3853093-3853112 | MS.gene050957:CDS | 30.0% | |
| TTGTGATTTCAATTGTCTTG+TGG | - | chr7.1:3852594-3852613 | MS.gene050957:intron | 30.0% | |
| TTTGGAAAAAGAGAACTTTC+AGG | + | chr7.1:3852979-3852998 | None:intergenic | 30.0% | |
| ! | ACCGTTTTCCAAATTATATG+TGG | - | chr7.1:3852520-3852539 | MS.gene050957:intron | 30.0% |
| ! | AGAAACGTATGTAGTCTTTT+TGG | - | chr7.1:3853456-3853475 | MS.gene050957:intron | 30.0% |
| ! | CAATTTTTGCATTCAGAAGA+AGG | - | chr7.1:3854939-3854958 | MS.gene050957:intron | 30.0% |
| ! | CCGTTTTCCAAATTATATGT+GGG | - | chr7.1:3852521-3852540 | MS.gene050957:intron | 30.0% |
| !! | ACCTGATATCACTTTTATAG+AGG | + | chr7.1:3853690-3853709 | None:intergenic | 30.0% |
| !! | AGCCTTTATTTCTTTTGTTG+GGG | - | chr7.1:3852317-3852336 | MS.gene050957:intron | 30.0% |
| !! | TTAATTGCTGCTTTGTGAAA+AGG | + | chr7.1:3854911-3854930 | None:intergenic | 30.0% |
| !!! | TCTTTTTATTTTCAGAACCC+AGG | + | chr7.1:3853713-3853732 | None:intergenic | 30.0% |
| AATAACCATGAGCAAAGTGA+CGG | + | chr7.1:3853524-3853543 | None:intergenic | 35.0% | |
| AATTGAACTTACACTGTTGC+TGG | + | chr7.1:3851471-3851490 | None:intergenic | 35.0% | |
| ATAAAAGTGATATCAGGTCC+TGG | - | chr7.1:3853692-3853711 | MS.gene050957:intron | 35.0% | |
| ATCACAAAAAACACAGCCAA+TGG | + | chr7.1:3852581-3852600 | None:intergenic | 35.0% | |
| CAATTTCAGGCCAAGAATAA+TGG | + | chr7.1:3854370-3854389 | None:intergenic | 35.0% | |
| CACAGGAATTTGGAAAACTT+TGG | + | chr7.1:3852908-3852927 | None:intergenic | 35.0% | |
| CATAGGTTTCTTCTCTAGTA+TGG | - | chr7.1:3854016-3854035 | MS.gene050957:intron | 35.0% | |
| CTCCCCAACAAAAGAAATAA+AGG | + | chr7.1:3852322-3852341 | None:intergenic | 35.0% | |
| GAAGAGAAAGCAAAACCTAA+AGG | - | chr7.1:3851662-3851681 | MS.gene050957:intron | 35.0% | |
| GATTATCCATATAGGATCCT+TGG | + | chr7.1:3853310-3853329 | None:intergenic | 35.0% | |
| GATTTATAACTGTCATGCAG+AGG | + | chr7.1:3854206-3854225 | None:intergenic | 35.0% | |
| GCCTCTATAAAAGTGATATC+AGG | - | chr7.1:3853686-3853705 | MS.gene050957:intron | 35.0% | |
| TAAAAGTGATATCAGGTCCT+GGG | - | chr7.1:3853693-3853712 | MS.gene050957:intron | 35.0% | |
| TAAATCTTTGTGATGAACGC+AGG | - | chr7.1:3854220-3854239 | MS.gene050957:intron | 35.0% | |
| TCAAACAGGTACAGTGATAT+AGG | - | chr7.1:3853606-3853625 | MS.gene050957:intron | 35.0% | |
| TGAACGGTATGAACAAATCT+TGG | + | chr7.1:3852117-3852136 | None:intergenic | 35.0% | |
| TGTCTGGATTACTTTCTTTC+AGG | - | chr7.1:3851868-3851887 | MS.gene050957:intron | 35.0% | |
| TTAAGCTGTGTATCCAAACA+GGG | - | chr7.1:3851922-3851941 | MS.gene050957:intron | 35.0% | |
| TTCAACCGACCTTTCAATTA+AGG | - | chr7.1:3854401-3854420 | MS.gene050957:intron | 35.0% | |
| TTCCAAATTATATGTGGGCA+AGG | - | chr7.1:3852526-3852545 | MS.gene050957:intron | 35.0% | |
| ! | ATCACTTGCTTGATCTTTTC+GGG | + | chr7.1:3852552-3852571 | None:intergenic | 35.0% |
| ! | CAAAGTTTTCCAAATACCTG+TGG | - | chr7.1:3852437-3852456 | MS.gene050957:intron | 35.0% |
| ! | CAAAGTTTTCCAAATTCCTG+TGG | - | chr7.1:3852906-3852925 | MS.gene050957:CDS | 35.0% |
| ! | CAATGTCAAAGATAATGGCA+TGG | + | chr7.1:3854099-3854118 | None:intergenic | 35.0% |
| ! | GATATCGTGTCATATTTTGC+AGG | - | chr7.1:3852152-3852171 | MS.gene050957:intron | 35.0% |
| ! | GATCACTTGCTTGATCTTTT+CGG | + | chr7.1:3852553-3852572 | None:intergenic | 35.0% |
| ! | GTGTTCCATTATGTGTCATT+TGG | - | chr7.1:3854160-3854179 | MS.gene050957:intron | 35.0% |
| ! | TATTTTGCAGGTTGTAACAC+CGG | - | chr7.1:3852164-3852183 | MS.gene050957:intron | 35.0% |
| !! | CTTTATTTCTTTTGTTGGGG+AGG | - | chr7.1:3852320-3852339 | MS.gene050957:intron | 35.0% |
| AGCAAGTGATCTTTCACCAT+TGG | - | chr7.1:3852562-3852581 | MS.gene050957:intron | 40.0% | |
| AGCAGTAGAAGAACCTGAAA+TGG | - | chr7.1:3854963-3854982 | MS.gene050957:intron | 40.0% | |
| AGGCTATCAAGAGAGTAAAG+AGG | + | chr7.1:3852302-3852321 | None:intergenic | 40.0% | |
| ATCAGAGAGCTAGACAGAAA+TGG | + | chr7.1:3854797-3854816 | None:intergenic | 40.0% | |
| ATCATATAGGATCCTTCGCA+AGG | + | chr7.1:3852805-3852824 | None:intergenic | 40.0% | |
| GAGAAGAAACCTATGAGATG+AGG | + | chr7.1:3854011-3854030 | None:intergenic | 40.0% | |
| GAGAAGAAGCCTATAAGATG+AGG | + | chr7.1:3853972-3853991 | None:intergenic | 40.0% | |
| GGACTTGCCCACATATAATT+TGG | + | chr7.1:3852997-3853016 | None:intergenic | 40.0% | |
| GTTAAGCTGTGTATCCAAAC+AGG | - | chr7.1:3851921-3851940 | MS.gene050957:intron | 40.0% | |
| TAATGGAACACATGCATGCA+TGG | + | chr7.1:3854151-3854170 | None:intergenic | 40.0% | |
| TCAGAGAGCTAGACAGAAAT+GGG | + | chr7.1:3854796-3854815 | None:intergenic | 40.0% | |
| TGAACGTTCTTCTCTCAAAC+AGG | - | chr7.1:3853592-3853611 | MS.gene050957:intron | 40.0% | |
| TGACAGAACATCAAAGTGTG+TGG | + | chr7.1:3854581-3854600 | None:intergenic | 40.0% | |
| TGCAACTTATGTAGCACCAT+TGG | - | chr7.1:3853339-3853358 | MS.gene050957:intron | 40.0% | |
| TGGAAAACGGTGAACTTTCA+TGG | + | chr7.1:3852511-3852530 | None:intergenic | 40.0% | |
| TGGAATCAGTTGGGACATTA+GGG | + | chr7.1:3853765-3853784 | None:intergenic | 40.0% | |
| TTGCATCTCATAGTCTGATC+TGG | - | chr7.1:3853928-3853947 | MS.gene050957:intron | 40.0% | |
| ! | ATACCTGAGTTTTTCCCAAG+CGG | + | chr7.1:3851836-3851855 | None:intergenic | 40.0% |
| !! | AAAGCTTTGGCTGTGTTTTG+TGG | - | chr7.1:3853063-3853082 | MS.gene050957:CDS | 40.0% |
| !! | AAGCTTTGGCTGTGTTTTGT+GGG | - | chr7.1:3853064-3853083 | MS.gene050957:CDS | 40.0% |
| !! | GTTGTAGACTTTTAGGTCGT+GGG | - | chr7.1:3852072-3852091 | MS.gene050957:intron | 40.0% |
| !! | TGAACAAATCTTGGTGCTAG+TGG | + | chr7.1:3852108-3852127 | None:intergenic | 40.0% |
| !! | TGATTTTGACAACCTTGCCA+AGG | - | chr7.1:3853290-3853309 | MS.gene050957:intron | 40.0% |
| !! | TGATTTTGACAACCTTGCGA+AGG | - | chr7.1:3852790-3852809 | MS.gene050957:intron | 40.0% |
| !! | TGTTGTAGACTTTTAGGTCG+TGG | - | chr7.1:3852071-3852090 | MS.gene050957:intron | 40.0% |
| !! | TTGTAGACTTTTAGGTCGTG+GGG | - | chr7.1:3852073-3852092 | MS.gene050957:intron | 40.0% |
| !!! | GTATGTTTTAAGGCTCTGTC+TGG | - | chr7.1:3851852-3851871 | MS.gene050957:intron | 40.0% |
| AAAACCTCCAAACCCCATCA+AGG | + | chr7.1:3855004-3855023 | None:intergenic | 45.0% | |
| AAGAAAGAAAGCGACTGCGT+CGG | - | chr7.1:3854675-3854694 | MS.gene050957:CDS | 45.0% | |
| AATACCTGTGGACTTGTCAG+TGG | - | chr7.1:3852449-3852468 | MS.gene050957:intron | 45.0% | |
| ACATTCACTTAGGCCCTGTT+TGG | + | chr7.1:3851938-3851957 | None:intergenic | 45.0% | |
| ACCTTGCCAAGGATCCTATA+TGG | - | chr7.1:3853301-3853320 | MS.gene050957:intron | 45.0% | |
| AGAAATGGGAGGAGAGAGAA+AGG | + | chr7.1:3854782-3854801 | None:intergenic | 45.0% | |
| AGCGAGTGATCTTTCACCAT+TGG | - | chr7.1:3853028-3853047 | MS.gene050957:intron | 45.0% | |
| AGCTGAATGGTGCAGATTCA+AGG | + | chr7.1:3854043-3854062 | None:intergenic | 45.0% | |
| ATACCTGTGGACTTGTCAGT+GGG | - | chr7.1:3852450-3852469 | MS.gene050957:intron | 45.0% | |
| ATGGGATGAGAAGAGAGGAA+GGG | + | chr7.1:3853793-3853812 | None:intergenic | 45.0% | |
| ATGGTGAAAGATCACTCGCT+TGG | + | chr7.1:3853028-3853047 | None:intergenic | 45.0% | |
| ATGTAGCTGATCCCACTTAG+TGG | - | chr7.1:3851976-3851995 | MS.gene050957:intron | 45.0% | |
| CAAGCCATATCCCACTAAGT+GGG | + | chr7.1:3851990-3852009 | None:intergenic | 45.0% | |
| CCAAATTCCTGTGGACTTGT+CGG | - | chr7.1:3852915-3852934 | MS.gene050957:CDS | 45.0% | |
| CTAGGAAGCTTTACAGAGCA+AGG | - | chr7.1:3854281-3854300 | MS.gene050957:intron | 45.0% | |
| CTCTCATCAGTACAGCTGAA+CGG | + | chr7.1:3852133-3852152 | None:intergenic | 45.0% | |
| CTGAAGAAACGGAAAGACCT+AGG | - | chr7.1:3854263-3854282 | MS.gene050957:intron | 45.0% | |
| CTGACAAGTCCACAGGTATT+TGG | + | chr7.1:3852449-3852468 | None:intergenic | 45.0% | |
| CTGGAATCAGTTGGGACATT+AGG | + | chr7.1:3853766-3853785 | None:intergenic | 45.0% | |
| CTTGCTCTGTAAAGCTTCCT+AGG | + | chr7.1:3854283-3854302 | None:intergenic | 45.0% | |
| CTTTGTGAATGCTCTGCCAA+TGG | + | chr7.1:3853047-3853066 | None:intergenic | 45.0% | |
| GAACATCAAAGTGTGTGGAC+TGG | + | chr7.1:3854576-3854595 | None:intergenic | 45.0% | |
| GAAGGACTCAGCAAACTACT+TGG | - | chr7.1:3853418-3853437 | MS.gene050957:intron | 45.0% | |
| GAAGGCTGTCTTAAGCTGAA+TGG | + | chr7.1:3854056-3854075 | None:intergenic | 45.0% | |
| GATGTTCTGTCACCTTAGTG+TGG | - | chr7.1:3854589-3854608 | MS.gene050957:intron | 45.0% | |
| GGCCTTGCCCACATATAATT+TGG | + | chr7.1:3852531-3852550 | None:intergenic | 45.0% | |
| TATGGATGGGATGAGAAGAG+AGG | + | chr7.1:3853798-3853817 | None:intergenic | 45.0% | |
| TCAGGCTATCTGCTGCTATA+AGG | - | chr7.1:3851886-3851905 | MS.gene050957:intron | 45.0% | |
| TCCATATAGGATCCTTGGCA+AGG | + | chr7.1:3853305-3853324 | None:intergenic | 45.0% | |
| TGAACTTACACTGTTGCTGG+TGG | + | chr7.1:3851468-3851487 | None:intergenic | 45.0% | |
| TGATCCCACTTAGTGGGATA+TGG | - | chr7.1:3851983-3852002 | MS.gene050957:intron | 45.0% | |
| TGGGCACACTCTAATTGTCT+AGG | + | chr7.1:3853740-3853759 | None:intergenic | 45.0% | |
| TGTAGCTGATCCCACTTAGT+GGG | - | chr7.1:3851977-3851996 | MS.gene050957:intron | 45.0% | |
| TTTGTGATGAACGCAGGTTC+AGG | - | chr7.1:3854226-3854245 | MS.gene050957:intron | 45.0% | |
| ! | AATTGCCGTCACTTTGCTCA+TGG | - | chr7.1:3853516-3853535 | MS.gene050957:intron | 45.0% |
| ! | GCAGAGCATTCACAAAGCTT+TGG | - | chr7.1:3853050-3853069 | MS.gene050957:CDS | 45.0% |
| ! | TACCTGAGTTTTTCCCAAGC+GGG | + | chr7.1:3851835-3851854 | None:intergenic | 45.0% |
| ! | TGATGGGGTTTGGAGGTTTT+CGG | - | chr7.1:3855004-3855023 | MS.gene050957:intron | 45.0% |
| ! | TTTTTCCCAAGCGGGATTCA+AGG | + | chr7.1:3851827-3851846 | None:intergenic | 45.0% |
| !! | ACAAATCTTGGTGCTAGTGG+AGG | + | chr7.1:3852105-3852124 | None:intergenic | 45.0% |
| !! | ATCACTCGCTTGGTCTTTTC+GGG | + | chr7.1:3853018-3853037 | None:intergenic | 45.0% |
| !! | GATCACTCGCTTGGTCTTTT+CGG | + | chr7.1:3853019-3853038 | None:intergenic | 45.0% |
| !! | TCAAGTACCTGTTGGCTTAG+TGG | + | chr7.1:3852195-3852214 | None:intergenic | 45.0% |
| !! | TTCTTTTGTTGGGGAGGTGT+TGG | - | chr7.1:3852326-3852345 | MS.gene050957:intron | 45.0% |
| !!! | TCTTTTGTTGGGGAGGTGTT+GGG | - | chr7.1:3852327-3852346 | MS.gene050957:intron | 45.0% |
| AAGGGTAGGCTGGAATCAGT+TGG | + | chr7.1:3853775-3853794 | None:intergenic | 50.0% | |
| AATTCCTGTGGACTTGTCGG+TGG | - | chr7.1:3852918-3852937 | MS.gene050957:CDS | 50.0% | |
| AGAAAGAAAGCGACTGCGTC+GGG | - | chr7.1:3854676-3854695 | MS.gene050957:CDS | 50.0% | |
| AGGGTAGGCTGGAATCAGTT+GGG | + | chr7.1:3853774-3853793 | None:intergenic | 50.0% | |
| AGTAGACCTTGAATCCCGCT+TGG | - | chr7.1:3851818-3851837 | MS.gene050957:CDS | 50.0% | |
| AGTTTGTGAGTGCGTGGTGA+AGG | - | chr7.1:3853400-3853419 | MS.gene050957:intron | 50.0% | |
| ATAAGATGAGGCCCAAGAGG+AGG | + | chr7.1:3853960-3853979 | None:intergenic | 50.0% | |
| ATCCCGCTTGGGAAAAACTC+AGG | - | chr7.1:3851830-3851849 | MS.gene050957:CDS | 50.0% | |
| ATTCCTGTGGACTTGTCGGT+GGG | - | chr7.1:3852919-3852938 | MS.gene050957:CDS | 50.0% | |
| ATTCGGTTGAATTAGGCCGC+TGG | - | chr7.1:3851563-3851582 | MS.gene050957:intron | 50.0% | |
| CAGGGCCTAAGTGAATGTCA+AGG | - | chr7.1:3851940-3851959 | MS.gene050957:intron | 50.0% | |
| CAGTTGGGACATTAGGGACT+GGG | + | chr7.1:3853759-3853778 | None:intergenic | 50.0% | |
| CCAAGCCATATCCCACTAAG+TGG | + | chr7.1:3851991-3852010 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATATGGCT+TGG | - | chr7.1:3851988-3852007 | MS.gene050957:intron | 50.0% | |
| CCGACAAGTCCACAGGAATT+TGG | + | chr7.1:3852918-3852937 | None:intergenic | 50.0% | |
| CCTATAAGATGAGGCCCAAG+AGG | + | chr7.1:3853963-3853982 | None:intergenic | 50.0% | |
| CCTCTTGGGCCTCATCTTAT+AGG | - | chr7.1:3853960-3853979 | MS.gene050957:intron | 50.0% | |
| GAATGTGTTGTCAACCCCAG+CGG | + | chr7.1:3851582-3851601 | None:intergenic | 50.0% | |
| GAGAGCTAGACAGAAATGGG+AGG | + | chr7.1:3854793-3854812 | None:intergenic | 50.0% | |
| GATGAACGCAGGTTCAGGAA+CGG | - | chr7.1:3854231-3854250 | MS.gene050957:intron | 50.0% | |
| GATGAGAAGAGAGGAAGGGT+AGG | + | chr7.1:3853789-3853808 | None:intergenic | 50.0% | |
| GATGGGATGAGAAGAGAGGA+AGG | + | chr7.1:3853794-3853813 | None:intergenic | 50.0% | |
| GCAACGTCAGGATCCATTTC+AGG | + | chr7.1:3854979-3854998 | None:intergenic | 50.0% | |
| GTAGACCTTGAATCCCGCTT+GGG | - | chr7.1:3851819-3851838 | MS.gene050957:CDS | 50.0% | |
| TAAGATGAGGCCCAAGAGGA+GGG | + | chr7.1:3853959-3853978 | None:intergenic | 50.0% | |
| TAGAGTAGAGAGGACGTGTG+TGG | + | chr7.1:3853856-3853875 | None:intergenic | 50.0% | |
| TCAGTTGGGACATTAGGGAC+TGG | + | chr7.1:3853760-3853779 | None:intergenic | 50.0% | |
| TCCTAGAGGCTAGAGTAGAG+AGG | + | chr7.1:3853866-3853885 | None:intergenic | 50.0% | |
| TCCTCTCTACTCTAGCCTCT+AGG | - | chr7.1:3853862-3853881 | MS.gene050957:intron | 50.0% | |
| TCTTCTCTAGCCCTCCTCTT+GGG | - | chr7.1:3853985-3854004 | MS.gene050957:intron | 50.0% | |
| TTCAATGGCTTCCTCTGCAC+TGG | + | chr7.1:3851783-3851802 | None:intergenic | 50.0% | |
| TTCGGTTGAATTAGGCCGCT+GGG | - | chr7.1:3851564-3851583 | MS.gene050957:intron | 50.0% | |
| TTCTTCTCTAGCCCTCCTCT+TGG | - | chr7.1:3853984-3854003 | MS.gene050957:intron | 50.0% | |
| ! | AGAGAGAGGGAGAGAGCATA+TGG | + | chr7.1:3853816-3853835 | None:intergenic | 50.0% |
| ! | AGAGGGAGAGAGCATATGGA+TGG | + | chr7.1:3853812-3853831 | None:intergenic | 50.0% |
| ! | GAGGGAGAGAGCATATGGAT+GGG | + | chr7.1:3853811-3853830 | None:intergenic | 50.0% |
| ! | TTCCACAGATCAGAGAGCGT+TGG | - | chr7.1:3853553-3853572 | MS.gene050957:intron | 50.0% |
| !! | TCCACAGATCAGAGAGCGTT+GGG | - | chr7.1:3853554-3853573 | MS.gene050957:intron | 50.0% |
| !! | TGTTGGCTTAGTGGTGCAAC+CGG | + | chr7.1:3852186-3852205 | None:intergenic | 50.0% |
| AAGATGAGGCCCAAGAGGAG+GGG | + | chr7.1:3853958-3853977 | None:intergenic | 55.0% | |
| AATGGCTTCCTCTGCACTGG+AGG | + | chr7.1:3851780-3851799 | None:intergenic | 55.0% | |
| AGAAGAGAGGAAGGGTAGGC+TGG | + | chr7.1:3853785-3853804 | None:intergenic | 55.0% | |
| ATGAGATGAGGCCCAAGAGG+AGG | + | chr7.1:3853999-3854018 | None:intergenic | 55.0% | |
| CCTATGAGATGAGGCCCAAG+AGG | + | chr7.1:3854002-3854021 | None:intergenic | 55.0% | |
| CCTCTTGGGCCTCATCTCAT+AGG | - | chr7.1:3853999-3854018 | MS.gene050957:intron | 55.0% | |
| CCTGACGTTGCTGCCTTGAT+GGG | - | chr7.1:3854988-3855007 | MS.gene050957:intron | 55.0% | |
| CTGACGTTGCTGCCTTGATG+GGG | - | chr7.1:3854989-3855008 | MS.gene050957:intron | 55.0% | |
| CTGCTCAGTTTGTGAGTGCG+TGG | - | chr7.1:3853394-3853413 | MS.gene050957:intron | 55.0% | |
| GGGTGTGACTCGTTTCCTAG+AGG | + | chr7.1:3853880-3853899 | None:intergenic | 55.0% | |
| GGTTGCACCACTAAGCCAAC+AGG | - | chr7.1:3852185-3852204 | MS.gene050957:intron | 55.0% | |
| GTACCCACTGACAAGTCCAC+AGG | + | chr7.1:3852456-3852475 | None:intergenic | 55.0% | |
| GTTGCTGCCTTGATGGGGTT+TGG | - | chr7.1:3854994-3855013 | MS.gene050957:intron | 55.0% | |
| TCCTGACGTTGCTGCCTTGA+TGG | - | chr7.1:3854987-3855006 | MS.gene050957:intron | 55.0% | |
| TCGGTTGAATTAGGCCGCTG+GGG | - | chr7.1:3851565-3851584 | MS.gene050957:intron | 55.0% | |
| TGAGATGAGGCCCAAGAGGA+GGG | + | chr7.1:3853998-3854017 | None:intergenic | 55.0% | |
| TGCACTGTGGGAGAGAGAGA+GGG | + | chr7.1:3853829-3853848 | None:intergenic | 55.0% | |
| !! | GGGGAGGTGTTGGGACTTAT+GGG | - | chr7.1:3852336-3852355 | MS.gene050957:intron | 55.0% |
| !! | TGGGGAGGTGTTGGGACTTA+TGG | - | chr7.1:3852335-3852354 | MS.gene050957:intron | 55.0% |
| CCCATCAAGGCAGCAACGTC+AGG | + | chr7.1:3854991-3855010 | None:intergenic | 60.0% | |
| GCCCAACGCTCTCTGATCTG+TGG | + | chr7.1:3853558-3853577 | None:intergenic | 60.0% | |
| GCTGCCTTGATGGGGTTTGG+AGG | - | chr7.1:3854997-3855016 | MS.gene050957:intron | 60.0% | |
| GTACCCACCGACAAGTCCAC+AGG | + | chr7.1:3852925-3852944 | None:intergenic | 60.0% | |
| GTAGAGAGGACGTGTGTGGC+AGG | + | chr7.1:3853852-3853871 | None:intergenic | 60.0% | |
| GTAGAGGTCCTCCAGTGCAG+AGG | - | chr7.1:3851769-3851788 | MS.gene050957:intron | 60.0% | |
| GTGCACTGTGGGAGAGAGAG+AGG | + | chr7.1:3853830-3853849 | None:intergenic | 60.0% | |
| GTGTGTGGCAGGTGCACTGT+GGG | + | chr7.1:3853841-3853860 | None:intergenic | 60.0% | |
| TGCTCGTGAGCGTGAGAGAC+AGG | - | chr7.1:3851637-3851656 | MS.gene050957:intron | 60.0% | |
| ATCTGGCGCACCCCTCCTCT+TGG | - | chr7.1:3853945-3853964 | MS.gene050957:intron | 65.0% | |
| CGTGTGTGGCAGGTGCACTG+TGG | + | chr7.1:3853842-3853861 | None:intergenic | 65.0% | |
| TCTGGCGCACCCCTCCTCTT+GGG | - | chr7.1:3853946-3853965 | MS.gene050957:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 3851455 | 3855044 | 3851455 | ID=MS.gene050957 |
| chr7.1 | mRNA | 3851455 | 3855044 | 3851455 | ID=MS.gene050957.t1;Parent=MS.gene050957 |
| chr7.1 | exon | 3855021 | 3855044 | 3855021 | ID=MS.gene050957.t1.exon1;Parent=MS.gene050957.t1 |
| chr7.1 | CDS | 3855021 | 3855044 | 3855021 | ID=cds.MS.gene050957.t1;Parent=MS.gene050957.t1 |
| chr7.1 | exon | 3854816 | 3854921 | 3854816 | ID=MS.gene050957.t1.exon2;Parent=MS.gene050957.t1 |
| chr7.1 | CDS | 3854816 | 3854921 | 3854816 | ID=cds.MS.gene050957.t1;Parent=MS.gene050957.t1 |
| chr7.1 | exon | 3854648 | 3854730 | 3854648 | ID=MS.gene050957.t1.exon3;Parent=MS.gene050957.t1 |
| chr7.1 | CDS | 3854648 | 3854730 | 3854648 | ID=cds.MS.gene050957.t1;Parent=MS.gene050957.t1 |
| chr7.1 | exon | 3854293 | 3854325 | 3854293 | ID=MS.gene050957.t1.exon4;Parent=MS.gene050957.t1 |
| chr7.1 | CDS | 3854293 | 3854325 | 3854293 | ID=cds.MS.gene050957.t1;Parent=MS.gene050957.t1 |
| chr7.1 | exon | 3853038 | 3853116 | 3853038 | ID=MS.gene050957.t1.exon5;Parent=MS.gene050957.t1 |
| chr7.1 | CDS | 3853038 | 3853116 | 3853038 | ID=cds.MS.gene050957.t1;Parent=MS.gene050957.t1 |
| chr7.1 | exon | 3852886 | 3852938 | 3852886 | ID=MS.gene050957.t1.exon6;Parent=MS.gene050957.t1 |
| chr7.1 | CDS | 3852886 | 3852938 | 3852886 | ID=cds.MS.gene050957.t1;Parent=MS.gene050957.t1 |
| chr7.1 | exon | 3852197 | 3852257 | 3852197 | ID=MS.gene050957.t1.exon7;Parent=MS.gene050957.t1 |
| chr7.1 | CDS | 3852197 | 3852257 | 3852197 | ID=cds.MS.gene050957.t1;Parent=MS.gene050957.t1 |
| chr7.1 | exon | 3851784 | 3851863 | 3851784 | ID=MS.gene050957.t1.exon8;Parent=MS.gene050957.t1 |
| chr7.1 | CDS | 3851784 | 3851863 | 3851784 | ID=cds.MS.gene050957.t1;Parent=MS.gene050957.t1 |
| chr7.1 | exon | 3851455 | 3851544 | 3851455 | ID=MS.gene050957.t1.exon9;Parent=MS.gene050957.t1 |
| chr7.1 | CDS | 3851455 | 3851544 | 3851455 | ID=cds.MS.gene050957.t1;Parent=MS.gene050957.t1 |
| Gene Sequence |
| Protein sequence |
