Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050857.t1 | XP_003626036.2 | 96.1 | 972 | 22 | 4 | 1 | 958 | 1 | 970 | 0.00E+00 | 1732.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050857.t1 | Q9SMX9 | 51.8 | 965 | 333 | 23 | 2 | 958 | 10 | 850 | 6.2e-249 | 862.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050857.t1 | G7KUJ2 | 96.1 | 972 | 22 | 4 | 1 | 958 | 1 | 970 | 0.0e+00 | 1732.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene050857.t1 | TF | SBP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050425 | MS.gene050857 | 0.825818 | 3.81E-54 | -1.69E-46 |
MS.gene050856 | MS.gene050857 | 0.822935 | 1.81E-53 | -1.69E-46 |
MS.gene050857 | MS.gene072658 | 0.825861 | 3.72E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050857.t1 | MTR_7g110320 | 95.893 | 974 | 24 | 4 | 1 | 960 | 1 | 972 | 0.0 | 1913 |
MS.gene050857.t1 | MTR_7g110320 | 95.809 | 859 | 20 | 4 | 1 | 845 | 1 | 857 | 0.0 | 1680 |
MS.gene050857.t1 | MTR_1g086250 | 74.566 | 979 | 217 | 11 | 2 | 960 | 8 | 974 | 0.0 | 1403 |
MS.gene050857.t1 | MTR_1g086250 | 78.261 | 782 | 158 | 2 | 190 | 960 | 2 | 782 | 0.0 | 1217 |
MS.gene050857.t1 | MTR_2g046550 | 48.940 | 991 | 441 | 17 | 18 | 960 | 23 | 996 | 0.0 | 869 |
MS.gene050857.t1 | MTR_2g046550 | 46.204 | 764 | 366 | 11 | 239 | 960 | 1 | 761 | 0.0 | 631 |
MS.gene050857.t1 | MTR_1g035010 | 32.570 | 568 | 334 | 13 | 402 | 953 | 434 | 968 | 1.94e-81 | 285 |
MS.gene050857.t1 | MTR_1g035010 | 53.049 | 164 | 70 | 3 | 111 | 269 | 74 | 235 | 9.84e-41 | 163 |
MS.gene050857.t1 | MTR_8g463140 | 66.667 | 90 | 30 | 0 | 143 | 232 | 65 | 154 | 5.16e-34 | 129 |
MS.gene050857.t1 | MTR_4g088555 | 61.290 | 93 | 36 | 0 | 128 | 220 | 48 | 140 | 4.79e-33 | 125 |
MS.gene050857.t1 | MTR_8g005960 | 54.237 | 118 | 47 | 1 | 107 | 217 | 144 | 261 | 2.46e-32 | 129 |
MS.gene050857.t1 | MTR_2g078770 | 64.516 | 93 | 33 | 0 | 135 | 227 | 50 | 142 | 4.06e-32 | 123 |
MS.gene050857.t1 | MTR_7g444860 | 62.500 | 96 | 36 | 0 | 132 | 227 | 138 | 233 | 4.07e-32 | 128 |
MS.gene050857.t1 | MTR_8g096780 | 57.000 | 100 | 42 | 1 | 128 | 227 | 85 | 183 | 2.85e-31 | 127 |
MS.gene050857.t1 | MTR_2g461920 | 72.368 | 76 | 21 | 0 | 141 | 216 | 169 | 244 | 3.03e-31 | 130 |
MS.gene050857.t1 | MTR_4g109770 | 52.000 | 125 | 50 | 2 | 98 | 216 | 76 | 196 | 6.43e-31 | 128 |
MS.gene050857.t1 | MTR_5g046670 | 67.949 | 78 | 25 | 0 | 143 | 220 | 244 | 321 | 1.14e-29 | 124 |
MS.gene050857.t1 | MTR_2g014200 | 64.444 | 90 | 30 | 1 | 128 | 217 | 51 | 138 | 2.17e-29 | 114 |
MS.gene050857.t1 | MTR_3g099080 | 46.721 | 122 | 63 | 1 | 128 | 247 | 83 | 204 | 1.50e-28 | 119 |
MS.gene050857.t1 | MTR_1g053715 | 60.465 | 86 | 34 | 0 | 143 | 228 | 74 | 159 | 8.78e-28 | 116 |
MS.gene050857.t1 | MTR_7g092930 | 67.568 | 74 | 24 | 0 | 143 | 216 | 68 | 141 | 9.04e-28 | 115 |
MS.gene050857.t1 | MTR_7g028740 | 59.551 | 89 | 34 | 1 | 128 | 216 | 64 | 150 | 2.16e-27 | 115 |
MS.gene050857.t1 | MTR_3g085180 | 60.000 | 80 | 32 | 0 | 143 | 222 | 165 | 244 | 1.23e-25 | 111 |
MS.gene050857.t1 | MTR_2g020620 | 25.765 | 392 | 228 | 14 | 409 | 752 | 220 | 596 | 4.49e-25 | 112 |
MS.gene050857.t1 | MTR_2g020620 | 44.872 | 78 | 43 | 0 | 144 | 221 | 91 | 168 | 2.62e-16 | 84.3 |
MS.gene050857.t1 | MTR_2g020620 | 24.722 | 449 | 284 | 16 | 339 | 752 | 63 | 492 | 7.37e-25 | 111 |
MS.gene050857.t1 | MTR_2g020620 | 25.513 | 341 | 215 | 10 | 436 | 752 | 3 | 328 | 1.48e-24 | 108 |
MS.gene050857.t1 | MTR_8g080690 | 56.962 | 79 | 34 | 0 | 143 | 221 | 151 | 229 | 3.95e-23 | 103 |
MS.gene050857.t1 | MTR_8g080680 | 47.000 | 100 | 53 | 0 | 128 | 227 | 117 | 216 | 1.25e-21 | 99.0 |
MS.gene050857.t1 | MTR_8g080670 | 48.315 | 89 | 46 | 0 | 127 | 215 | 146 | 234 | 1.28e-19 | 93.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050857.t1 | AT2G47070 | 52.430 | 967 | 328 | 24 | 2 | 960 | 10 | 852 | 0.0 | 891 |
MS.gene050857.t1 | AT3G60030 | 53.125 | 960 | 370 | 22 | 10 | 960 | 10 | 898 | 0.0 | 888 |
MS.gene050857.t1 | AT2G47070 | 55.362 | 802 | 271 | 18 | 167 | 960 | 1 | 723 | 0.0 | 807 |
MS.gene050857.t1 | AT1G20980 | 34.591 | 477 | 278 | 9 | 413 | 879 | 481 | 933 | 3.71e-80 | 282 |
MS.gene050857.t1 | AT1G20980 | 36.858 | 331 | 142 | 12 | 98 | 399 | 66 | 358 | 4.76e-35 | 145 |
MS.gene050857.t1 | AT1G76580 | 31.079 | 547 | 336 | 11 | 415 | 957 | 480 | 989 | 8.05e-77 | 273 |
MS.gene050857.t1 | AT1G76580 | 63.889 | 108 | 37 | 1 | 143 | 248 | 114 | 221 | 2.33e-36 | 149 |
MS.gene050857.t1 | AT1G76580 | 63.889 | 108 | 37 | 1 | 143 | 248 | 114 | 221 | 5.66e-37 | 149 |
MS.gene050857.t1 | AT1G76580 | 35.780 | 218 | 136 | 2 | 415 | 632 | 480 | 693 | 1.75e-31 | 132 |
MS.gene050857.t1 | AT1G76580 | 63.889 | 108 | 37 | 1 | 143 | 248 | 114 | 221 | 5.92e-37 | 149 |
MS.gene050857.t1 | AT1G76580 | 36.111 | 216 | 134 | 2 | 415 | 630 | 480 | 691 | 6.68e-31 | 130 |
MS.gene050857.t1 | AT2G33810 | 62.069 | 87 | 33 | 0 | 134 | 220 | 45 | 131 | 2.56e-33 | 125 |
MS.gene050857.t1 | AT3G15270 | 61.053 | 95 | 34 | 1 | 135 | 226 | 52 | 146 | 2.81e-32 | 124 |
MS.gene050857.t1 | AT1G02065 | 50.000 | 138 | 57 | 3 | 92 | 221 | 133 | 266 | 4.71e-32 | 128 |
MS.gene050857.t1 | AT1G53160 | 66.667 | 81 | 27 | 0 | 142 | 222 | 53 | 133 | 5.51e-31 | 120 |
MS.gene050857.t1 | AT1G53160 | 66.667 | 81 | 27 | 0 | 142 | 222 | 53 | 133 | 5.51e-31 | 120 |
MS.gene050857.t1 | AT1G53160 | 66.667 | 81 | 27 | 0 | 142 | 222 | 53 | 133 | 5.57e-31 | 120 |
MS.gene050857.t1 | AT1G69170 | 64.444 | 90 | 31 | 1 | 127 | 216 | 109 | 197 | 3.18e-30 | 124 |
MS.gene050857.t1 | AT3G57920 | 68.750 | 80 | 25 | 0 | 137 | 216 | 53 | 132 | 1.90e-28 | 118 |
MS.gene050857.t1 | AT5G50670 | 53.933 | 89 | 41 | 0 | 134 | 222 | 92 | 180 | 9.39e-28 | 116 |
MS.gene050857.t1 | AT5G50670 | 53.933 | 89 | 41 | 0 | 134 | 222 | 92 | 180 | 9.39e-28 | 116 |
MS.gene050857.t1 | AT5G50570 | 53.933 | 89 | 41 | 0 | 134 | 222 | 92 | 180 | 9.39e-28 | 116 |
MS.gene050857.t1 | AT5G50570 | 53.933 | 89 | 41 | 0 | 134 | 222 | 92 | 180 | 9.39e-28 | 116 |
MS.gene050857.t1 | AT5G43270 | 55.670 | 97 | 43 | 0 | 143 | 239 | 169 | 265 | 1.45e-27 | 117 |
MS.gene050857.t1 | AT5G43270 | 55.670 | 97 | 43 | 0 | 143 | 239 | 169 | 265 | 1.45e-27 | 117 |
MS.gene050857.t1 | AT5G43270 | 55.670 | 97 | 43 | 0 | 143 | 239 | 169 | 265 | 1.45e-27 | 117 |
MS.gene050857.t1 | AT2G42200 | 67.568 | 74 | 24 | 0 | 143 | 216 | 74 | 147 | 5.56e-26 | 111 |
MS.gene050857.t1 | AT1G27370 | 54.444 | 90 | 41 | 0 | 127 | 216 | 160 | 249 | 7.36e-26 | 110 |
MS.gene050857.t1 | AT1G27370 | 54.444 | 90 | 41 | 0 | 127 | 216 | 160 | 249 | 9.14e-26 | 111 |
MS.gene050857.t1 | AT1G27370 | 54.444 | 90 | 41 | 0 | 127 | 216 | 160 | 249 | 9.14e-26 | 111 |
MS.gene050857.t1 | AT1G27370 | 54.444 | 90 | 41 | 0 | 127 | 216 | 160 | 249 | 9.14e-26 | 111 |
MS.gene050857.t1 | AT1G27370 | 54.444 | 90 | 41 | 0 | 127 | 216 | 160 | 249 | 9.14e-26 | 111 |
MS.gene050857.t1 | AT1G27370 | 54.444 | 90 | 41 | 0 | 127 | 216 | 160 | 249 | 9.14e-26 | 111 |
MS.gene050857.t1 | AT1G27370 | 54.444 | 90 | 41 | 0 | 127 | 216 | 160 | 249 | 9.14e-26 | 111 |
MS.gene050857.t1 | AT5G18830 | 29.020 | 255 | 157 | 6 | 413 | 658 | 303 | 542 | 1.72e-25 | 114 |
MS.gene050857.t1 | AT5G18830 | 51.613 | 93 | 43 | 1 | 128 | 220 | 125 | 215 | 1.35e-22 | 104 |
MS.gene050857.t1 | AT5G18830 | 29.020 | 255 | 157 | 6 | 413 | 658 | 303 | 542 | 2.18e-25 | 113 |
MS.gene050857.t1 | AT5G18830 | 51.613 | 93 | 43 | 1 | 128 | 220 | 125 | 215 | 1.42e-22 | 104 |
MS.gene050857.t1 | AT5G18830 | 29.020 | 255 | 157 | 6 | 413 | 658 | 303 | 542 | 2.39e-25 | 113 |
MS.gene050857.t1 | AT5G18830 | 51.613 | 93 | 43 | 1 | 128 | 220 | 125 | 215 | 1.41e-22 | 104 |
MS.gene050857.t1 | AT1G27360 | 63.514 | 74 | 27 | 0 | 143 | 216 | 175 | 248 | 1.05e-24 | 108 |
MS.gene050857.t1 | AT1G27360 | 63.514 | 74 | 27 | 0 | 143 | 216 | 175 | 248 | 1.05e-24 | 108 |
MS.gene050857.t1 | AT1G27360 | 63.514 | 74 | 27 | 0 | 143 | 216 | 175 | 248 | 1.05e-24 | 108 |
MS.gene050857.t1 | AT1G27360 | 63.514 | 74 | 27 | 0 | 143 | 216 | 175 | 248 | 1.05e-24 | 108 |
MS.gene050857.t1 | AT1G02065 | 42.991 | 107 | 49 | 3 | 92 | 190 | 133 | 235 | 1.12e-16 | 81.3 |
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
51383 | gene | 2632 | 11041 | 2632 | ID=MS.gene050857 |
51383 | mRNA | 2632 | 11041 | 2632 | ID=MS.gene050857.t1;Parent=MS.gene050857 |
51383 | exon | 2632 | 3197 | 2632 | ID=MS.gene050857.t1.exon1;Parent=MS.gene050857.t1 |
51383 | CDS | 2632 | 3197 | 2632 | ID=cds.MS.gene050857.t1;Parent=MS.gene050857.t1 |
51383 | exon | 3311 | 3492 | 3311 | ID=MS.gene050857.t1.exon2;Parent=MS.gene050857.t1 |
51383 | CDS | 3311 | 3492 | 3311 | ID=cds.MS.gene050857.t1;Parent=MS.gene050857.t1 |
51383 | exon | 4959 | 5233 | 4959 | ID=MS.gene050857.t1.exon3;Parent=MS.gene050857.t1 |
51383 | CDS | 4959 | 5233 | 4959 | ID=cds.MS.gene050857.t1;Parent=MS.gene050857.t1 |
51383 | exon | 5266 | 5544 | 5266 | ID=MS.gene050857.t1.exon4;Parent=MS.gene050857.t1 |
51383 | CDS | 5266 | 5544 | 5266 | ID=cds.MS.gene050857.t1;Parent=MS.gene050857.t1 |
51383 | exon | 6915 | 6989 | 6915 | ID=MS.gene050857.t1.exon5;Parent=MS.gene050857.t1 |
51383 | CDS | 6915 | 6989 | 6915 | ID=cds.MS.gene050857.t1;Parent=MS.gene050857.t1 |
51383 | exon | 7077 | 7184 | 7077 | ID=MS.gene050857.t1.exon6;Parent=MS.gene050857.t1 |
51383 | CDS | 7077 | 7184 | 7077 | ID=cds.MS.gene050857.t1;Parent=MS.gene050857.t1 |
51383 | exon | 7287 | 7404 | 7287 | ID=MS.gene050857.t1.exon7;Parent=MS.gene050857.t1 |
51383 | CDS | 7287 | 7404 | 7287 | ID=cds.MS.gene050857.t1;Parent=MS.gene050857.t1 |
51383 | exon | 7745 | 7886 | 7745 | ID=MS.gene050857.t1.exon8;Parent=MS.gene050857.t1 |
51383 | CDS | 7745 | 7886 | 7745 | ID=cds.MS.gene050857.t1;Parent=MS.gene050857.t1 |
51383 | exon | 8028 | 8172 | 8028 | ID=MS.gene050857.t1.exon9;Parent=MS.gene050857.t1 |
51383 | CDS | 8028 | 8172 | 8028 | ID=cds.MS.gene050857.t1;Parent=MS.gene050857.t1 |
51383 | exon | 9533 | 10168 | 9533 | ID=MS.gene050857.t1.exon10;Parent=MS.gene050857.t1 |
51383 | CDS | 9533 | 10168 | 9533 | ID=cds.MS.gene050857.t1;Parent=MS.gene050857.t1 |
51383 | exon | 10520 | 10864 | 10520 | ID=MS.gene050857.t1.exon11;Parent=MS.gene050857.t1 |
51383 | CDS | 10520 | 10864 | 10520 | ID=cds.MS.gene050857.t1;Parent=MS.gene050857.t1 |
51383 | exon | 10933 | 11041 | 10933 | ID=MS.gene050857.t1.exon12;Parent=MS.gene050857.t1 |
51383 | CDS | 10933 | 11041 | 10933 | ID=cds.MS.gene050857.t1;Parent=MS.gene050857.t1 |
Gene Sequence |
Protein sequence |