Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072658.t1 | XP_003626036.2 | 94.4 | 1003 | 26 | 3 | 1 | 975 | 1 | 1001 | 0.00E+00 | 1828.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072658.t1 | Q9SMX9 | 53.7 | 985 | 332 | 23 | 2 | 975 | 10 | 881 | 7.0e-269 | 928.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072658.t1 | G7KUJ2 | 94.4 | 1003 | 26 | 3 | 1 | 975 | 1 | 1001 | 0.0e+00 | 1828.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene072658.t1 | TF | SBP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050425 | MS.gene072658 | 0.994704 | 1.76E-209 | -1.69E-46 |
MS.gene050856 | MS.gene072658 | 0.997079 | 1.44E-236 | -1.69E-46 |
MS.gene050857 | MS.gene072658 | 0.825861 | 3.72E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072658.t1 | MTR_7g110320 | 94.915 | 1003 | 21 | 4 | 1 | 975 | 1 | 1001 | 0.0 | 1947 |
MS.gene072658.t1 | MTR_7g110320 | 94.296 | 859 | 19 | 4 | 1 | 831 | 1 | 857 | 0.0 | 1647 |
MS.gene072658.t1 | MTR_1g086250 | 74.525 | 1001 | 223 | 8 | 2 | 975 | 8 | 1003 | 0.0 | 1458 |
MS.gene072658.t1 | MTR_1g086250 | 79.531 | 811 | 165 | 1 | 165 | 975 | 2 | 811 | 0.0 | 1298 |
MS.gene072658.t1 | MTR_2g046550 | 50.397 | 1008 | 443 | 18 | 18 | 974 | 23 | 1024 | 0.0 | 920 |
MS.gene072658.t1 | MTR_2g046550 | 47.859 | 794 | 376 | 12 | 214 | 974 | 1 | 789 | 0.0 | 687 |
MS.gene072658.t1 | MTR_1g035010 | 33.943 | 601 | 351 | 13 | 388 | 974 | 434 | 1002 | 7.28e-90 | 309 |
MS.gene072658.t1 | MTR_1g035010 | 42.411 | 224 | 90 | 4 | 26 | 244 | 46 | 235 | 9.65e-42 | 166 |
MS.gene072658.t1 | MTR_8g463140 | 66.667 | 90 | 30 | 0 | 118 | 207 | 65 | 154 | 2.48e-32 | 124 |
MS.gene072658.t1 | MTR_8g005960 | 54.237 | 118 | 47 | 1 | 82 | 192 | 144 | 261 | 2.99e-32 | 129 |
MS.gene072658.t1 | MTR_7g444860 | 62.500 | 96 | 36 | 0 | 107 | 202 | 138 | 233 | 3.83e-32 | 128 |
MS.gene072658.t1 | MTR_2g078770 | 64.516 | 93 | 33 | 0 | 110 | 202 | 50 | 142 | 4.47e-32 | 123 |
MS.gene072658.t1 | MTR_2g461920 | 72.368 | 76 | 21 | 0 | 116 | 191 | 169 | 244 | 2.63e-31 | 130 |
MS.gene072658.t1 | MTR_8g096780 | 57.000 | 100 | 42 | 1 | 103 | 202 | 85 | 183 | 2.82e-31 | 127 |
MS.gene072658.t1 | MTR_4g109770 | 52.033 | 123 | 49 | 2 | 75 | 191 | 78 | 196 | 1.80e-30 | 126 |
MS.gene072658.t1 | MTR_4g088555 | 61.290 | 93 | 36 | 0 | 103 | 195 | 48 | 140 | 6.04e-30 | 116 |
MS.gene072658.t1 | MTR_5g046670 | 67.949 | 78 | 25 | 0 | 118 | 195 | 244 | 321 | 9.76e-30 | 125 |
MS.gene072658.t1 | MTR_2g014200 | 64.444 | 90 | 30 | 1 | 103 | 192 | 51 | 138 | 1.95e-29 | 114 |
MS.gene072658.t1 | MTR_3g099080 | 46.721 | 122 | 63 | 1 | 103 | 222 | 83 | 204 | 1.57e-28 | 119 |
MS.gene072658.t1 | MTR_7g092930 | 67.568 | 74 | 24 | 0 | 118 | 191 | 68 | 141 | 9.60e-28 | 115 |
MS.gene072658.t1 | MTR_1g053715 | 60.465 | 86 | 34 | 0 | 118 | 203 | 74 | 159 | 1.11e-27 | 115 |
MS.gene072658.t1 | MTR_7g028740 | 59.551 | 89 | 34 | 1 | 103 | 191 | 64 | 150 | 2.01e-27 | 115 |
MS.gene072658.t1 | MTR_3g085180 | 60.000 | 80 | 32 | 0 | 118 | 197 | 165 | 244 | 1.45e-25 | 111 |
MS.gene072658.t1 | MTR_2g020620 | 25.272 | 368 | 229 | 11 | 395 | 738 | 251 | 596 | 6.09e-25 | 112 |
MS.gene072658.t1 | MTR_2g020620 | 44.872 | 78 | 43 | 0 | 119 | 196 | 91 | 168 | 2.44e-16 | 84.3 |
MS.gene072658.t1 | MTR_2g020620 | 25.272 | 368 | 229 | 11 | 395 | 738 | 147 | 492 | 1.15e-24 | 110 |
MS.gene072658.t1 | MTR_2g020620 | 25.513 | 341 | 215 | 10 | 422 | 738 | 3 | 328 | 2.09e-24 | 108 |
MS.gene072658.t1 | MTR_8g080690 | 56.962 | 79 | 34 | 0 | 118 | 196 | 151 | 229 | 3.61e-23 | 103 |
MS.gene072658.t1 | MTR_8g080680 | 47.000 | 100 | 53 | 0 | 103 | 202 | 117 | 216 | 1.08e-21 | 99.0 |
MS.gene072658.t1 | MTR_8g080670 | 48.315 | 89 | 46 | 0 | 102 | 190 | 146 | 234 | 1.16e-19 | 93.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072658.t1 | AT2G47070 | 53.503 | 985 | 334 | 22 | 2 | 975 | 10 | 881 | 0.0 | 949 |
MS.gene072658.t1 | AT3G60030 | 53.737 | 990 | 362 | 22 | 10 | 975 | 10 | 927 | 0.0 | 937 |
MS.gene072658.t1 | AT2G47070 | 56.057 | 842 | 272 | 18 | 142 | 975 | 1 | 752 | 0.0 | 866 |
MS.gene072658.t1 | AT1G20980 | 30.899 | 1068 | 553 | 32 | 21 | 974 | 38 | 1034 | 8.47e-126 | 407 |
MS.gene072658.t1 | AT1G76580 | 31.661 | 578 | 353 | 12 | 401 | 974 | 480 | 1019 | 1.29e-79 | 280 |
MS.gene072658.t1 | AT1G76580 | 44.811 | 212 | 74 | 7 | 25 | 223 | 40 | 221 | 6.69e-37 | 151 |
MS.gene072658.t1 | AT1G76580 | 44.811 | 212 | 74 | 7 | 25 | 223 | 40 | 221 | 1.70e-37 | 151 |
MS.gene072658.t1 | AT1G76580 | 35.780 | 218 | 136 | 2 | 401 | 618 | 480 | 693 | 1.39e-31 | 132 |
MS.gene072658.t1 | AT1G76580 | 44.811 | 212 | 74 | 7 | 25 | 223 | 40 | 221 | 1.72e-37 | 151 |
MS.gene072658.t1 | AT1G76580 | 36.111 | 216 | 134 | 2 | 401 | 616 | 480 | 691 | 4.90e-31 | 131 |
MS.gene072658.t1 | AT3G15270 | 61.053 | 95 | 34 | 1 | 110 | 201 | 52 | 146 | 3.50e-32 | 124 |
MS.gene072658.t1 | AT2G33810 | 62.069 | 87 | 33 | 0 | 109 | 195 | 45 | 131 | 1.15e-31 | 120 |
MS.gene072658.t1 | AT1G02065 | 54.167 | 120 | 47 | 2 | 85 | 196 | 147 | 266 | 1.90e-31 | 126 |
MS.gene072658.t1 | AT1G53160 | 66.667 | 81 | 27 | 0 | 117 | 197 | 53 | 133 | 5.35e-31 | 120 |
MS.gene072658.t1 | AT1G53160 | 60.417 | 96 | 36 | 1 | 102 | 197 | 40 | 133 | 6.01e-31 | 120 |
MS.gene072658.t1 | AT1G53160 | 60.417 | 96 | 36 | 1 | 102 | 197 | 40 | 133 | 6.01e-31 | 120 |
MS.gene072658.t1 | AT1G69170 | 64.444 | 90 | 31 | 1 | 102 | 191 | 109 | 197 | 3.43e-30 | 124 |
MS.gene072658.t1 | AT3G57920 | 68.750 | 80 | 25 | 0 | 112 | 191 | 53 | 132 | 1.78e-28 | 118 |
MS.gene072658.t1 | AT5G50670 | 53.933 | 89 | 41 | 0 | 109 | 197 | 92 | 180 | 8.19e-28 | 116 |
MS.gene072658.t1 | AT5G50670 | 53.933 | 89 | 41 | 0 | 109 | 197 | 92 | 180 | 8.19e-28 | 116 |
MS.gene072658.t1 | AT5G50570 | 53.933 | 89 | 41 | 0 | 109 | 197 | 92 | 180 | 8.19e-28 | 116 |
MS.gene072658.t1 | AT5G50570 | 53.933 | 89 | 41 | 0 | 109 | 197 | 92 | 180 | 8.19e-28 | 116 |
MS.gene072658.t1 | AT5G43270 | 55.670 | 97 | 43 | 0 | 118 | 214 | 169 | 265 | 1.52e-27 | 117 |
MS.gene072658.t1 | AT5G43270 | 55.670 | 97 | 43 | 0 | 118 | 214 | 169 | 265 | 1.52e-27 | 117 |
MS.gene072658.t1 | AT5G43270 | 55.670 | 97 | 43 | 0 | 118 | 214 | 169 | 265 | 1.52e-27 | 117 |
MS.gene072658.t1 | AT2G42200 | 67.568 | 74 | 24 | 0 | 118 | 191 | 74 | 147 | 5.37e-26 | 111 |
MS.gene072658.t1 | AT1G27370 | 62.162 | 74 | 28 | 0 | 118 | 191 | 176 | 249 | 8.18e-26 | 110 |
MS.gene072658.t1 | AT1G27370 | 62.162 | 74 | 28 | 0 | 118 | 191 | 176 | 249 | 1.22e-25 | 110 |
MS.gene072658.t1 | AT1G27370 | 62.162 | 74 | 28 | 0 | 118 | 191 | 176 | 249 | 1.22e-25 | 110 |
MS.gene072658.t1 | AT1G27370 | 62.162 | 74 | 28 | 0 | 118 | 191 | 176 | 249 | 1.22e-25 | 110 |
MS.gene072658.t1 | AT1G27370 | 62.162 | 74 | 28 | 0 | 118 | 191 | 176 | 249 | 1.22e-25 | 110 |
MS.gene072658.t1 | AT1G27370 | 62.162 | 74 | 28 | 0 | 118 | 191 | 176 | 249 | 1.22e-25 | 110 |
MS.gene072658.t1 | AT1G27370 | 62.162 | 74 | 28 | 0 | 118 | 191 | 176 | 249 | 1.22e-25 | 110 |
MS.gene072658.t1 | AT5G18830 | 29.020 | 255 | 157 | 6 | 399 | 644 | 303 | 542 | 1.55e-25 | 114 |
MS.gene072658.t1 | AT5G18830 | 51.613 | 93 | 43 | 1 | 103 | 195 | 125 | 215 | 1.13e-22 | 105 |
MS.gene072658.t1 | AT5G18830 | 29.020 | 255 | 157 | 6 | 399 | 644 | 303 | 542 | 1.87e-25 | 114 |
MS.gene072658.t1 | AT5G18830 | 51.613 | 93 | 43 | 1 | 103 | 195 | 125 | 215 | 1.26e-22 | 104 |
MS.gene072658.t1 | AT5G18830 | 29.020 | 255 | 157 | 6 | 399 | 644 | 303 | 542 | 2.17e-25 | 113 |
MS.gene072658.t1 | AT5G18830 | 51.613 | 93 | 43 | 1 | 103 | 195 | 125 | 215 | 1.24e-22 | 104 |
MS.gene072658.t1 | AT1G27360 | 63.514 | 74 | 27 | 0 | 118 | 191 | 175 | 248 | 1.15e-24 | 108 |
MS.gene072658.t1 | AT1G27360 | 63.514 | 74 | 27 | 0 | 118 | 191 | 175 | 248 | 1.15e-24 | 108 |
MS.gene072658.t1 | AT1G27360 | 63.514 | 74 | 27 | 0 | 118 | 191 | 175 | 248 | 1.15e-24 | 108 |
MS.gene072658.t1 | AT1G27360 | 63.514 | 74 | 27 | 0 | 118 | 191 | 175 | 248 | 1.15e-24 | 108 |
MS.gene072658.t1 | AT1G02065 | 47.191 | 89 | 39 | 2 | 85 | 165 | 147 | 235 | 4.80e-16 | 79.3 |
Find 243 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGATACACCCCTTCCTTTC+AGG | 0.153174 | 7.3:+4938910 | MS.gene072658:CDS |
TGTATATATTCCGACCTTTC+AGG | 0.184193 | 7.3:+4942065 | MS.gene072658:CDS |
AGGTGGGAATCTTTGGATTA+TGG | 0.220320 | 7.3:+4942085 | MS.gene072658:CDS |
TTAAAAGAAGGATCTTTATC+TGG | 0.221777 | 7.3:+4936233 | MS.gene072658:CDS |
ACCTTTCAGGTGGGAATCTT+TGG | 0.233849 | 7.3:+4942078 | MS.gene072658:CDS |
ATGGTAATTCCTCTGATTTA+AGG | 0.234114 | 7.3:+4933812 | MS.gene072658:CDS |
TGCACAATTCATCTTTCTTC+TGG | 0.235230 | 7.3:-4941853 | None:intergenic |
GATTCTCAGGTTCCCGTAAA+AGG | 0.235694 | 7.3:-4936208 | None:intergenic |
TGCTTTAGAAGGGAATTATT+TGG | 0.245183 | 7.3:+4939190 | MS.gene072658:CDS |
TGGAAATGCTGAAGTTAAAA+AGG | 0.255582 | 7.3:+4941889 | MS.gene072658:CDS |
TTCCAGTTTGAATAGGCTTC+TGG | 0.255666 | 7.3:+4938455 | MS.gene072658:CDS |
CATCTTTCCCGGCTGCTATA+TGG | 0.271343 | 7.3:-4941257 | None:intergenic |
TTAACCAGTGCCTTGTCTTC+AGG | 0.277941 | 7.3:-4941171 | None:intergenic |
CATGGATTTCATTCATGAAA+TGG | 0.280274 | 7.3:+4940843 | MS.gene072658:CDS |
GAAGACAAGGCACTGGTTAA+TGG | 0.284075 | 7.3:+4941174 | MS.gene072658:CDS |
CCTTTCAGGAGTAATAATTA+TGG | 0.304697 | 7.3:+4938924 | MS.gene072658:CDS |
GGTTCGTTTGAATTCTAGTA+TGG | 0.313368 | 7.3:+4940903 | MS.gene072658:CDS |
AACTAGGTTAGGTTTGAATA+AGG | 0.315677 | 7.3:+4934075 | MS.gene072658:intron |
AGGTTATTGTGTGCTTTAGA+AGG | 0.329096 | 7.3:+4939179 | MS.gene072658:intron |
ACAGAAAGCAAATAAAATCT+AGG | 0.329856 | 7.3:+4940878 | MS.gene072658:CDS |
CAGGGACAGAACATGAAAAT+TGG | 0.330494 | 7.3:-4939277 | None:intergenic |
GTTTGGCAGGCCATAATAAA+AGG | 0.331564 | 7.3:+4934509 | MS.gene072658:CDS |
GGGATTTGAATAGTTGGAAA+TGG | 0.337890 | 7.3:+4933860 | MS.gene072658:CDS |
GCTACATGGGAAGGAAATAA+TGG | 0.338198 | 7.3:+4934139 | MS.gene072658:CDS |
TATCTTGCACTTTCAGAGTT+GGG | 0.367463 | 7.3:+4941057 | MS.gene072658:CDS |
TGGTAATTCCTCTGATTTAA+GGG | 0.374391 | 7.3:+4933813 | MS.gene072658:CDS |
CTATTGAACCTCATGCTTGA+TGG | 0.376008 | 7.3:+4941003 | MS.gene072658:CDS |
GCCACCATTGACAGCATTGC+AGG | 0.376137 | 7.3:-4941986 | None:intergenic |
TTTCCAGCCCCTTCAACATC+TGG | 0.378764 | 7.3:-4940799 | None:intergenic |
GCTTCGCCAGTGGAACTAGA+AGG | 0.378856 | 7.3:-4936668 | None:intergenic |
TCATTATACTTACATTCATT+TGG | 0.379587 | 7.3:+4941748 | MS.gene072658:CDS |
TTCCTCTGATTTAAGGGCTA+TGG | 0.385188 | 7.3:+4933819 | MS.gene072658:CDS |
AATCAAGATGCTGTTCCTAA+TGG | 0.389375 | 7.3:+4934544 | MS.gene072658:CDS |
ATCTGACTTCCAGTTTGAAT+AGG | 0.389914 | 7.3:+4938448 | MS.gene072658:CDS |
GTGGTGGTGTTGGTGCTACA+TGG | 0.398169 | 7.3:+4934125 | MS.gene072658:CDS |
TTGGTCTCCAGATTCTTGAT+TGG | 0.398756 | 7.3:+4938217 | MS.gene072658:intron |
CTGATATTGAAGGATATATA+CGG | 0.402032 | 7.3:+4938256 | MS.gene072658:CDS |
GAACTAACCTACTACATTGT+TGG | 0.402517 | 7.3:-4934333 | None:intergenic |
AGCCACTTGAATCGATCTAA+TGG | 0.406206 | 7.3:-4940934 | None:intergenic |
GAACTGGATGGGTTCACATC+AGG | 0.406435 | 7.3:+4938502 | MS.gene072658:CDS |
TGGCTTGTGTCGAACTTTGT+CGG | 0.407195 | 7.3:-4941833 | None:intergenic |
TTTGACTATTTATCTGCGTC+AGG | 0.409326 | 7.3:+4938293 | MS.gene072658:CDS |
AAGAATGGGATTTGAATAGT+TGG | 0.409761 | 7.3:+4933854 | MS.gene072658:CDS |
GGATTTGAATAGTTGGAAAT+GGG | 0.410489 | 7.3:+4933861 | MS.gene072658:CDS |
ATGGATTTCATTCATGAAAT+GGG | 0.410942 | 7.3:+4940844 | MS.gene072658:CDS |
CTGTGTGCTTGAGCCTCTAC+TGG | 0.413919 | 7.3:+4940759 | MS.gene072658:CDS |
CCACCACCACCAACCGGAAT+AGG | 0.416724 | 7.3:-4933946 | None:intergenic |
TCGTTCGGTGAACTTCCATT+AGG | 0.417682 | 7.3:-4934559 | None:intergenic |
ACTCTGAAAGTGCAAGATAC+AGG | 0.418841 | 7.3:-4941053 | None:intergenic |
TCCTCTGATTTAAGGGCTAT+GGG | 0.419815 | 7.3:+4933820 | MS.gene072658:CDS |
ATCCAGAAGCCTATTCAAAC+TGG | 0.420131 | 7.3:-4938457 | None:intergenic |
TGATTACCCATGGATGCAAC+AGG | 0.424656 | 7.3:+4936583 | MS.gene072658:CDS |
CCTGATGCTGTCGGTCCTGC+TGG | 0.426837 | 7.3:+4941222 | MS.gene072658:CDS |
TTGTGCACTACCTTTGAGAT+TGG | 0.431132 | 7.3:+4941869 | MS.gene072658:CDS |
GTATCTTGCACTTTCAGAGT+TGG | 0.431765 | 7.3:+4941056 | MS.gene072658:CDS |
TTTGATGATGGTACAGCAAT+TGG | 0.432107 | 7.3:-4938966 | None:intergenic |
TTTCAATTGTACGGTAATGA+TGG | 0.435790 | 7.3:+4933793 | MS.gene072658:CDS |
AAGAAGCTGTCGAAGACGTT+TGG | 0.436466 | 7.3:+4934492 | MS.gene072658:CDS |
ACCTTGTGGCAGGTCGAGTC+AGG | 0.438034 | 7.3:-4939019 | None:intergenic |
CTGTCCAGCAGTACTATCTC+TGG | 0.440583 | 7.3:-4936453 | None:intergenic |
CAGATCAAAATCATTCATCT+TGG | 0.443030 | 7.3:-4936477 | None:intergenic |
ATCCTCAGAACCATCTTTCC+CGG | 0.448875 | 7.3:-4941268 | None:intergenic |
TAACTACCGCACACCAATCA+TGG | 0.449202 | 7.3:-4940975 | None:intergenic |
CGGAATATATACAGAACTTC+CGG | 0.452521 | 7.3:-4942055 | None:intergenic |
TCTGAATTTCCACTTGTTTG+AGG | 0.453259 | 7.3:-4936626 | None:intergenic |
CTGAAGCTCATCAAGATCCT+TGG | 0.455535 | 7.3:-4939249 | None:intergenic |
CCAGCAGGACCGACAGCATC+AGG | 0.458652 | 7.3:-4941222 | None:intergenic |
TTGCCTGTCACTACAAATCT+TGG | 0.461583 | 7.3:+4936548 | MS.gene072658:CDS |
GATACATTCAAAGGCTAGTA+AGG | 0.462061 | 7.3:+4934279 | MS.gene072658:CDS |
CCTATTCCGGTTGGTGGTGG+TGG | 0.463981 | 7.3:+4933946 | MS.gene072658:CDS |
CAGTGGAACTAGAAGGGGAC+TGG | 0.466134 | 7.3:-4936661 | None:intergenic |
AGTTCTCTGTGGACCATGAT+TGG | 0.466958 | 7.3:+4940962 | MS.gene072658:CDS |
TAGTTCCACTGGCGAAGCTC+AGG | 0.467544 | 7.3:+4936673 | MS.gene072658:CDS |
TATTTATCTGCGTCAGGCTG+AGG | 0.471576 | 7.3:+4938299 | MS.gene072658:CDS |
GAGAAATAGCAGGCAGTTGG+TGG | 0.474116 | 7.3:+4941101 | MS.gene072658:CDS |
TATCCAGATGTTGAAGGGGC+TGG | 0.474205 | 7.3:+4940796 | MS.gene072658:CDS |
GGGAAGAAAAGTAGAGTAGC+TGG | 0.477037 | 7.3:+4934160 | MS.gene072658:CDS |
CAAAATATTTCAGATAAACT+AGG | 0.478759 | 7.3:+4941147 | MS.gene072658:CDS |
TCCTTTCATAGTCGTGGAGG+AGG | 0.480311 | 7.3:+4940720 | MS.gene072658:CDS |
CAGTCCCCTTCTAGTTCCAC+TGG | 0.483978 | 7.3:+4936662 | MS.gene072658:CDS |
TGAAGATACTCATGAGCCTA+TGG | 0.486997 | 7.3:+4939217 | MS.gene072658:CDS |
AACATGCCAGATTGAGGACC+AGG | 0.487015 | 7.3:+4940678 | MS.gene072658:intron |
GGGGTGTATCAATGACAATC+TGG | 0.488591 | 7.3:-4938899 | None:intergenic |
TCGAACTTTGTCGGAATGCT+AGG | 0.490308 | 7.3:-4941824 | None:intergenic |
AATCTTAGTTTAAACCTTGG+TGG | 0.493064 | 7.3:+4934106 | MS.gene072658:CDS |
TTGTTTAGACCTGATGCTGT+CGG | 0.493104 | 7.3:+4941213 | MS.gene072658:CDS |
GTCAAATCAGACCGCCGACC+AGG | 0.493204 | 7.3:+4936115 | MS.gene072658:CDS |
CATATAGCAGCCGGGAAAGA+TGG | 0.493229 | 7.3:+4941258 | MS.gene072658:CDS |
AATAGTGCTCGCGACAGCAC+GGG | 0.496826 | 7.3:+4941692 | MS.gene072658:CDS |
GAAGCCAGAGATAGTACTGC+TGG | 0.499262 | 7.3:+4936449 | MS.gene072658:CDS |
TTCAATATCAGTTGGACTGT+GGG | 0.499678 | 7.3:-4938244 | None:intergenic |
CAAGATACCATTGAAAATGA+AGG | 0.500592 | 7.3:-4938541 | None:intergenic |
ATTTCATTCATGAAATGGGT+TGG | 0.501491 | 7.3:+4940848 | MS.gene072658:CDS |
TTAAACCTTGGTGGTGGTGT+TGG | 0.502647 | 7.3:+4934115 | MS.gene072658:CDS |
CTACTAGTCTGATCATCGTT+CGG | 0.504746 | 7.3:-4934574 | None:intergenic |
CTAGCTCTCTTGATTACCCA+TGG | 0.506626 | 7.3:+4936573 | MS.gene072658:CDS |
CACAGTCCAACTGATATTGA+AGG | 0.508704 | 7.3:+4938246 | MS.gene072658:CDS |
CCCCATAGCCCTTAAATCAG+AGG | 0.508712 | 7.3:-4933821 | None:intergenic |
GGTAATCTTAGTTTAAACCT+TGG | 0.509670 | 7.3:+4934103 | MS.gene072658:CDS |
GAACAACCACCACCACCAAC+CGG | 0.510451 | 7.3:-4933952 | None:intergenic |
TGTTCTGTCCCTGCGATGAA+TGG | 0.511696 | 7.3:+4939287 | MS.gene072658:CDS |
TAAAAGAAGGATCTTTATCT+GGG | 0.513564 | 7.3:+4936234 | MS.gene072658:CDS |
AAGGCTAGTAAGGCCCTTGT+CGG | 0.515263 | 7.3:+4934289 | MS.gene072658:CDS |
AATTGACGGTGTTCCGGCAC+CGG | 0.515405 | 7.3:-4933919 | None:intergenic |
CTACATGGGAAGGAAATAAT+GGG | 0.516126 | 7.3:+4934140 | MS.gene072658:CDS |
AACCCTCGTCCATTCATCGC+AGG | 0.517005 | 7.3:-4939296 | None:intergenic |
TGATGCATTCACATGATGCT+AGG | 0.517823 | 7.3:+4936360 | MS.gene072658:CDS |
AGGAGTCTTGCTAATCAGAA+TGG | 0.518289 | 7.3:+4936158 | MS.gene072658:CDS |
TCCTCTTGTACTTAGAGCAC+AGG | 0.518622 | 7.3:+4938119 | MS.gene072658:CDS |
GGTTCTGCCAACAATGTAGT+AGG | 0.519358 | 7.3:+4934326 | MS.gene072658:CDS |
CCTGAGAATCTGTTAAAAGA+AGG | 0.519369 | 7.3:+4936221 | MS.gene072658:CDS |
GCACCAAGATTTGTAGTGAC+AGG | 0.520401 | 7.3:-4936551 | None:intergenic |
TGGAGAACCTTGAGAACCAT+TGG | 0.521696 | 7.3:-4936285 | None:intergenic |
AATTATTACTCCTGAAAGGA+AGG | 0.522122 | 7.3:-4938920 | None:intergenic |
GTTTCTACTTTAGTTACCAA+TGG | 0.523621 | 7.3:+4936269 | MS.gene072658:CDS |
GCTAATCAGAATGGCGAACA+AGG | 0.524392 | 7.3:+4936167 | MS.gene072658:CDS |
CCATTTAGAATCGCACGGAT+CGG | 0.524737 | 7.3:+4938058 | MS.gene072658:intron |
GATACTTATCCAGATGTTGA+AGG | 0.525295 | 7.3:+4940790 | MS.gene072658:CDS |
GGTTATTGTGTGCTTTAGAA+GGG | 0.527744 | 7.3:+4939180 | MS.gene072658:intron |
TGTGAATCCTGTTGCATCCA+TGG | 0.528171 | 7.3:-4936590 | None:intergenic |
TCCTCCTCCACGACTATGAA+AGG | 0.528181 | 7.3:-4940721 | None:intergenic |
AAAAGTAGAGTAGCTGGTGG+AGG | 0.528723 | 7.3:+4934166 | MS.gene072658:CDS |
GGCTGAGGTTGTGTGGGAGG+AGG | 0.530578 | 7.3:+4938314 | MS.gene072658:CDS |
TTAGTTACCAATGGTTCTCA+AGG | 0.531458 | 7.3:+4936278 | MS.gene072658:CDS |
CTTAGTTTAAACCTTGGTGG+TGG | 0.531572 | 7.3:+4934109 | MS.gene072658:CDS |
CTTCGCCAGTGGAACTAGAA+GGG | 0.533313 | 7.3:-4936667 | None:intergenic |
AGGTTAGGTTTGAATAAGGA+AGG | 0.534502 | 7.3:+4934079 | MS.gene072658:intron |
CAGAAAGCAAATAAAATCTA+GGG | 0.536295 | 7.3:+4940879 | MS.gene072658:CDS |
AGCTGTCGAAGACGTTTGGC+AGG | 0.538625 | 7.3:+4934496 | MS.gene072658:CDS |
GTCCCTGCGATGAATGGACG+AGG | 0.539835 | 7.3:+4939293 | MS.gene072658:CDS |
TTTATCTGGGAAGTCTGAGA+TGG | 0.541620 | 7.3:+4936247 | MS.gene072658:CDS |
GAATTTCCACTTGTTTGAGG+TGG | 0.542056 | 7.3:-4936623 | None:intergenic |
ATATATCCTTCAATATCAGT+TGG | 0.543073 | 7.3:-4938252 | None:intergenic |
AAAGATGAGTAAGCAGATCC+TGG | 0.543962 | 7.3:-4936133 | None:intergenic |
ACACCACTCCATATAGCAGC+CGG | 0.544335 | 7.3:+4941249 | MS.gene072658:CDS |
AACTGGATGGGTTCACATCA+GGG | 0.545764 | 7.3:+4938503 | MS.gene072658:CDS |
TGGTGGTGTTGGTGCTACAT+GGG | 0.547732 | 7.3:+4934126 | MS.gene072658:CDS |
TTGCCTATTCCGGTTGGTGG+TGG | 0.548521 | 7.3:+4933943 | MS.gene072658:CDS |
AGTAAAGAATACCTTGTGGC+AGG | 0.549712 | 7.3:-4939029 | None:intergenic |
CTCTGAAAGTGCAAGATACA+GGG | 0.551934 | 7.3:-4941052 | None:intergenic |
TGGAGGGCTATTTGAAACAC+CGG | 0.552422 | 7.3:-4936417 | None:intergenic |
TGCGTCAGGCTGAGGTTGTG+TGG | 0.553151 | 7.3:+4938307 | MS.gene072658:CDS |
AAGAAAATCAACAAGAGTCA+AGG | 0.555072 | 7.3:+4941776 | MS.gene072658:CDS |
ACCGGGCTTTGCAGAAAATG+TGG | 0.556990 | 7.3:-4936399 | None:intergenic |
TAGTAAGTTGACTCCGGTGC+CGG | 0.557954 | 7.3:+4933906 | MS.gene072658:CDS |
AGTACAAGAGGAAAATCGCT+TGG | 0.559448 | 7.3:-4938108 | None:intergenic |
CGTAACCGTGCATAATCCTC+AGG | 0.560195 | 7.3:-4941722 | None:intergenic |
ATTGAAGGATATATACGGCC+TGG | 0.560219 | 7.3:+4938261 | MS.gene072658:CDS |
TCAGGCTGAGGTTGTGTGGG+AGG | 0.560360 | 7.3:+4938311 | MS.gene072658:CDS |
CATTTCATGAATGAAATCCA+TGG | 0.560753 | 7.3:-4940842 | None:intergenic |
ATACTTATCCAGATGTTGAA+GGG | 0.561009 | 7.3:+4940791 | MS.gene072658:CDS |
GAATAGTGCTCGCGACAGCA+CGG | 0.566039 | 7.3:+4941691 | MS.gene072658:CDS |
CTGGCTTCTGAGTAAGCTGG+AGG | 0.566231 | 7.3:-4936434 | None:intergenic |
CTTGATGGAACAGTGAGTAC+AGG | 0.567632 | 7.3:+4941018 | MS.gene072658:CDS |
ACCTGTGCTCTAAGTACAAG+AGG | 0.568862 | 7.3:-4938120 | None:intergenic |
TTCAGGTGGGAATTGAAGCA+TGG | 0.570988 | 7.3:+4941669 | MS.gene072658:intron |
TTCAGCATTTCCAATCTCAA+AGG | 0.571428 | 7.3:-4941879 | None:intergenic |
TCTCTGGCTTCTGAGTAAGC+TGG | 0.571429 | 7.3:-4936437 | None:intergenic |
TGGAGTGGTGTCAAACCAGC+AGG | 0.572947 | 7.3:-4941237 | None:intergenic |
TCCTTGGAGCATTGATCCAT+AGG | 0.573493 | 7.3:-4939233 | None:intergenic |
CCATAATTATTACTCCTGAA+AGG | 0.573935 | 7.3:-4938924 | None:intergenic |
TTCTCCTCACAGCTCTGTGA+AGG | 0.574334 | 7.3:-4941083 | None:intergenic |
CAGACCTGCAATGCTGTCAA+TGG | 0.575070 | 7.3:+4941982 | MS.gene072658:CDS |
CATCAGGGTGCAGCATCAGA+TGG | 0.579332 | 7.3:+4938518 | MS.gene072658:CDS |
AAATGAGCTGTCTTTGATGA+TGG | 0.580500 | 7.3:-4938978 | None:intergenic |
ATCTATATTGACTCAGACGA+TGG | 0.581568 | 7.3:+4936506 | MS.gene072658:CDS |
GTATCACTTGATTCCAGTAG+AGG | 0.583315 | 7.3:-4940772 | None:intergenic |
TCCAAAGATTCCCACCTGAA+AGG | 0.584115 | 7.3:-4942079 | None:intergenic |
TCGAGTCCACCTCAAACAAG+TGG | 0.586688 | 7.3:+4936617 | MS.gene072658:CDS |
ATTATTACTCCTGAAAGGAA+GGG | 0.587708 | 7.3:-4938919 | None:intergenic |
AAGATTCCCACCTGAAAGGT+CGG | 0.589390 | 7.3:-4942075 | None:intergenic |
TTATTACTCCTGAAAGGAAG+GGG | 0.590283 | 7.3:-4938918 | None:intergenic |
TTCGCCAGTGGAACTAGAAG+GGG | 0.593774 | 7.3:-4936666 | None:intergenic |
TTCCATTAGATCGATTCAAG+TGG | 0.595205 | 7.3:+4940932 | MS.gene072658:CDS |
TTCCCGGCTGCTATATGGAG+TGG | 0.595339 | 7.3:-4941252 | None:intergenic |
CTTCAATATCAGTTGGACTG+TGG | 0.596443 | 7.3:-4938245 | None:intergenic |
GCTGCATCGCATTTCCGACA+AGG | 0.596748 | 7.3:-4934303 | None:intergenic |
AAGAAAAGTAGAGTAGCTGG+TGG | 0.598248 | 7.3:+4934163 | MS.gene072658:CDS |
AGTGGAACTAGAAGGGGACT+GGG | 0.598471 | 7.3:-4936660 | None:intergenic |
GGAGGGCTATTTGAAACACC+GGG | 0.598567 | 7.3:-4936416 | None:intergenic |
GAGTCAAGGAGGGGCTCACG+TGG | 0.601404 | 7.3:+4941790 | MS.gene072658:CDS |
TGATTCTGTACTGTAACAGT+TGG | 0.603417 | 7.3:-4936305 | None:intergenic |
AGCTACTAGTAAGTTGACTC+CGG | 0.603545 | 7.3:+4933900 | MS.gene072658:CDS |
CTAATCAGAATGGCGAACAA+GGG | 0.604164 | 7.3:+4936168 | MS.gene072658:CDS |
ATGGCATAGAGGACATAGAA+AGG | 0.604321 | 7.3:+4936525 | MS.gene072658:CDS |
GGTGTTGGTGCTACATGGGA+AGG | 0.605894 | 7.3:+4934130 | MS.gene072658:CDS |
GCGTCAGGCTGAGGTTGTGT+GGG | 0.606741 | 7.3:+4938308 | MS.gene072658:CDS |
GTGAATCCTGTTGCATCCAT+GGG | 0.607464 | 7.3:-4936589 | None:intergenic |
AGGACCTGAAGACAAGGCAC+TGG | 0.607641 | 7.3:+4941167 | MS.gene072658:CDS |
CTGCATCGCATTTCCGACAA+GGG | 0.607873 | 7.3:-4934302 | None:intergenic |
AGATCGATTCAAGTGGCTCG+TGG | 0.608145 | 7.3:+4940939 | MS.gene072658:CDS |
GAGGAGAAATAGCAGGCAGT+TGG | 0.608350 | 7.3:+4941098 | MS.gene072658:CDS |
GAATGGACGAGGGTTTATTG+AGG | 0.611377 | 7.3:+4939304 | MS.gene072658:CDS |
AGTTTGTGAGATACATTCAA+AGG | 0.612307 | 7.3:+4934270 | MS.gene072658:CDS |
CACCACTCCATATAGCAGCC+GGG | 0.612629 | 7.3:+4941250 | MS.gene072658:CDS |
TCTTCTATTCAAAAGCTCGC+CGG | 0.612868 | 7.3:+4942036 | MS.gene072658:CDS |
GAGCTGTGAGGAGAAATAGC+AGG | 0.613146 | 7.3:+4941091 | MS.gene072658:CDS |
TTTGACTAATGATCCTTGCA+TGG | 0.616174 | 7.3:+4941302 | MS.gene072658:CDS |
TTAGGTTTGAATAAGGAAGG+TGG | 0.617859 | 7.3:+4934082 | MS.gene072658:CDS |
TTCCACCATTTAGAATCGCA+CGG | 0.619213 | 7.3:+4938053 | MS.gene072658:intron |
GTCAATGGTGGCTATAGCAG+CGG | 0.620908 | 7.3:+4941997 | MS.gene072658:CDS |
ACCTGACTCGACCTGCCACA+AGG | 0.620977 | 7.3:+4939018 | MS.gene072658:CDS |
ATATATTCCGACCTTTCAGG+TGG | 0.622453 | 7.3:+4942068 | MS.gene072658:CDS |
ACCCTCGTCCATTCATCGCA+GGG | 0.622638 | 7.3:-4939295 | None:intergenic |
ATAGTGCTCGCGACAGCACG+GGG | 0.624692 | 7.3:+4941693 | MS.gene072658:CDS |
TTGTCGGAAATGCGATGCAG+CGG | 0.625371 | 7.3:+4934305 | MS.gene072658:CDS |
TACTTATCCAGATGTTGAAG+GGG | 0.625894 | 7.3:+4940792 | MS.gene072658:CDS |
GCCTATGGATCAATGCTCCA+AGG | 0.626151 | 7.3:+4939232 | MS.gene072658:CDS |
CAGCACGGGGTCAACACCTG+AGG | 0.627470 | 7.3:+4941706 | MS.gene072658:CDS |
TAATCAGAATGGCGAACAAG+GGG | 0.629708 | 7.3:+4936169 | MS.gene072658:CDS |
GAGGATTATGCACGGTTACG+TGG | 0.631447 | 7.3:+4941725 | MS.gene072658:CDS |
CCTCTGATTTAAGGGCTATG+GGG | 0.632165 | 7.3:+4933821 | MS.gene072658:CDS |
TGGCTTCTGAGTAAGCTGGA+GGG | 0.633247 | 7.3:-4936433 | None:intergenic |
AAATCAACAAGAGTCAAGGA+GGG | 0.635293 | 7.3:+4941780 | MS.gene072658:CDS |
AAAATCAACAAGAGTCAAGG+AGG | 0.635540 | 7.3:+4941779 | MS.gene072658:CDS |
TGACTCAGACGATGGCATAG+AGG | 0.639188 | 7.3:+4936514 | MS.gene072658:CDS |
TTGCTTCAAGAGTTTGACGA+AGG | 0.640841 | 7.3:+4934466 | MS.gene072658:CDS |
GATGCATTCACATGATGCTA+GGG | 0.641130 | 7.3:+4936361 | MS.gene072658:CDS |
GTGCAAGATACAGGGATGTG+TGG | 0.641857 | 7.3:-4941044 | None:intergenic |
TCAAGGAGGGGCTCACGTGG+TGG | 0.642540 | 7.3:+4941793 | MS.gene072658:CDS |
GTGGCTCGTGGAGTTCTCTG+TGG | 0.643500 | 7.3:+4940951 | MS.gene072658:CDS |
AGCCGGGAAAGATGGTTCTG+AGG | 0.645502 | 7.3:+4941266 | MS.gene072658:CDS |
ATGAGTAAGCAGATCCTGGT+CGG | 0.645833 | 7.3:-4936129 | None:intergenic |
AAAGCAAATAAAATCTAGGG+TGG | 0.646286 | 7.3:+4940882 | MS.gene072658:CDS |
TAAACTAGGACCTGAAGACA+AGG | 0.648850 | 7.3:+4941161 | MS.gene072658:CDS |
AATCAACAAGAGTCAAGGAG+GGG | 0.649223 | 7.3:+4941781 | MS.gene072658:CDS |
TCAGGTGAAGGATTGTCGCG+CGG | 0.656838 | 7.3:+4934210 | MS.gene072658:CDS |
AAATACCTGAGCTTCGCCAG+TGG | 0.661952 | 7.3:-4936678 | None:intergenic |
ACCTGCAATGCTGTCAATGG+TGG | 0.664454 | 7.3:+4941985 | MS.gene072658:CDS |
ATAGTCAAAACAACACAACC+AGG | 0.668652 | 7.3:-4938279 | None:intergenic |
TATATTCCGACCTTTCAGGT+GGG | 0.670018 | 7.3:+4942069 | MS.gene072658:CDS |
AGCAGCGGTCTGTGTCTGTG+TGG | 0.670428 | 7.3:+4942012 | MS.gene072658:CDS |
AGTAAGCAGATCCTGGTCGG+CGG | 0.677788 | 7.3:-4936126 | None:intergenic |
TGGCAGGCCATAATAAAAGG+AGG | 0.679908 | 7.3:+4934512 | MS.gene072658:CDS |
TCTCACAAACTTTATGACGT+CGG | 0.680002 | 7.3:-4934258 | None:intergenic |
TCACTGTTCCATCAAGCATG+AGG | 0.684334 | 7.3:-4941011 | None:intergenic |
ACATGCCAGATTGAGGACCA+GGG | 0.686651 | 7.3:+4940679 | MS.gene072658:intron |
TCCCTGCGATGAATGGACGA+GGG | 0.688704 | 7.3:+4939294 | MS.gene072658:CDS |
GTCTCCTTCACAGAGCTGTG+AGG | 0.689109 | 7.3:+4941079 | MS.gene072658:CDS |
CAACACCTGAGGATTATGCA+CGG | 0.704327 | 7.3:+4941717 | MS.gene072658:CDS |
TAGCACCAACACCACCACCA+AGG | 0.720242 | 7.3:-4934120 | None:intergenic |
TGTGGACCATGATTGGTGTG+CGG | 0.729884 | 7.3:+4940969 | MS.gene072658:CDS |
AATCAGAATGGCGAACAAGG+GGG | 0.742654 | 7.3:+4936170 | MS.gene072658:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 4933784 | 4942117 | 4933784 | ID=MS.gene072658 |
chr7.3 | mRNA | 4933784 | 4942117 | 4933784 | ID=MS.gene072658.t1;Parent=MS.gene072658 |
chr7.3 | exon | 4933784 | 4934007 | 4933784 | ID=MS.gene072658.t1.exon1;Parent=MS.gene072658.t1 |
chr7.3 | CDS | 4933784 | 4934007 | 4933784 | ID=cds.MS.gene072658.t1;Parent=MS.gene072658.t1 |
chr7.3 | exon | 4934081 | 4934347 | 4934081 | ID=MS.gene072658.t1.exon2;Parent=MS.gene072658.t1 |
chr7.3 | CDS | 4934081 | 4934347 | 4934081 | ID=cds.MS.gene072658.t1;Parent=MS.gene072658.t1 |
chr7.3 | exon | 4934459 | 4934640 | 4934459 | ID=MS.gene072658.t1.exon3;Parent=MS.gene072658.t1 |
chr7.3 | CDS | 4934459 | 4934640 | 4934459 | ID=cds.MS.gene072658.t1;Parent=MS.gene072658.t1 |
chr7.3 | exon | 4936108 | 4936694 | 4936108 | ID=MS.gene072658.t1.exon4;Parent=MS.gene072658.t1 |
chr7.3 | CDS | 4936108 | 4936694 | 4936108 | ID=cds.MS.gene072658.t1;Parent=MS.gene072658.t1 |
chr7.3 | exon | 4938066 | 4938140 | 4938066 | ID=MS.gene072658.t1.exon5;Parent=MS.gene072658.t1 |
chr7.3 | CDS | 4938066 | 4938140 | 4938066 | ID=cds.MS.gene072658.t1;Parent=MS.gene072658.t1 |
chr7.3 | exon | 4938228 | 4938335 | 4938228 | ID=MS.gene072658.t1.exon6;Parent=MS.gene072658.t1 |
chr7.3 | CDS | 4938228 | 4938335 | 4938228 | ID=cds.MS.gene072658.t1;Parent=MS.gene072658.t1 |
chr7.3 | exon | 4938438 | 4938555 | 4938438 | ID=MS.gene072658.t1.exon7;Parent=MS.gene072658.t1 |
chr7.3 | CDS | 4938438 | 4938555 | 4938438 | ID=cds.MS.gene072658.t1;Parent=MS.gene072658.t1 |
chr7.3 | exon | 4938898 | 4939039 | 4938898 | ID=MS.gene072658.t1.exon8;Parent=MS.gene072658.t1 |
chr7.3 | CDS | 4938898 | 4939039 | 4938898 | ID=cds.MS.gene072658.t1;Parent=MS.gene072658.t1 |
chr7.3 | exon | 4939181 | 4939325 | 4939181 | ID=MS.gene072658.t1.exon9;Parent=MS.gene072658.t1 |
chr7.3 | CDS | 4939181 | 4939325 | 4939181 | ID=cds.MS.gene072658.t1;Parent=MS.gene072658.t1 |
chr7.3 | exon | 4940688 | 4941323 | 4940688 | ID=MS.gene072658.t1.exon10;Parent=MS.gene072658.t1 |
chr7.3 | CDS | 4940688 | 4941323 | 4940688 | ID=cds.MS.gene072658.t1;Parent=MS.gene072658.t1 |
chr7.3 | exon | 4941674 | 4942117 | 4941674 | ID=MS.gene072658.t1.exon11;Parent=MS.gene072658.t1 |
chr7.3 | CDS | 4941674 | 4942117 | 4941674 | ID=cds.MS.gene072658.t1;Parent=MS.gene072658.t1 |
Gene Sequence |
Protein sequence |