Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051083.t1 | XP_013444474.1 | 95.7 | 235 | 10 | 0 | 1 | 235 | 1 | 235 | 4.90E-119 | 437.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051083.t1 | Q9C9E3 | 34.1 | 220 | 115 | 5 | 15 | 212 | 3 | 214 | 1.6e-17 | 91.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051083.t1 | I3T425 | 95.7 | 235 | 10 | 0 | 1 | 235 | 1 | 235 | 3.5e-119 | 437.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene051083.t1 | TF | Tify |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051083 | MS.gene25093 | 0.822964 | 1.79E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051083.t1 | MTR_8g021380 | 95.745 | 235 | 10 | 0 | 1 | 235 | 1 | 235 | 1.46e-167 | 461 |
| MS.gene051083.t1 | MTR_8g021380 | 79.253 | 241 | 9 | 1 | 1 | 200 | 1 | 241 | 1.50e-131 | 372 |
| MS.gene051083.t1 | MTR_2g042900 | 32.328 | 232 | 118 | 7 | 11 | 210 | 12 | 236 | 1.01e-22 | 93.2 |
| MS.gene051083.t1 | MTR_2g042900 | 29.482 | 251 | 110 | 8 | 11 | 200 | 12 | 256 | 1.52e-14 | 71.2 |
| MS.gene051083.t1 | MTR_5g013530 | 33.071 | 127 | 70 | 4 | 85 | 208 | 24 | 138 | 5.44e-14 | 68.2 |
| MS.gene051083.t1 | MTR_5g013530 | 33.884 | 121 | 65 | 4 | 91 | 208 | 8 | 116 | 1.13e-13 | 66.6 |
| MS.gene051083.t1 | MTR_5g013520 | 32.258 | 124 | 63 | 3 | 91 | 208 | 1 | 109 | 1.61e-12 | 63.5 |
| MS.gene051083.t1 | MTR_4g124960 | 30.693 | 202 | 100 | 7 | 11 | 208 | 12 | 177 | 3.64e-12 | 63.5 |
| MS.gene051083.t1 | MTR_5g013515 | 31.034 | 116 | 77 | 1 | 93 | 208 | 2 | 114 | 9.56e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051083.t1 | AT1G72450 | 35.000 | 220 | 113 | 7 | 15 | 212 | 3 | 214 | 2.11e-24 | 98.2 |
| MS.gene051083.t1 | AT1G17380 | 33.180 | 217 | 110 | 8 | 17 | 212 | 11 | 213 | 8.59e-19 | 83.2 |
| MS.gene051083.t1 | AT1G72450 | 33.173 | 208 | 109 | 6 | 15 | 200 | 3 | 202 | 2.56e-18 | 80.5 |
| MS.gene051083.t1 | AT1G19180 | 32.589 | 224 | 116 | 8 | 12 | 209 | 14 | 228 | 3.31e-18 | 81.3 |
| MS.gene051083.t1 | AT1G19180 | 32.589 | 224 | 116 | 8 | 12 | 209 | 14 | 228 | 3.31e-18 | 81.3 |
| MS.gene051083.t1 | AT1G74950 | 29.600 | 250 | 142 | 10 | 1 | 223 | 1 | 243 | 1.63e-16 | 76.6 |
| MS.gene051083.t1 | AT1G17380 | 34.194 | 155 | 77 | 5 | 99 | 230 | 63 | 215 | 5.52e-13 | 66.6 |
| MS.gene051083.t1 | AT1G17380 | 31.220 | 205 | 109 | 7 | 16 | 202 | 10 | 200 | 7.10e-13 | 65.9 |
| MS.gene051083.t1 | AT1G19180 | 35.345 | 116 | 71 | 3 | 96 | 209 | 49 | 162 | 2.17e-12 | 63.9 |
| MS.gene051083.t1 | AT1G74950 | 28.634 | 227 | 129 | 9 | 1 | 200 | 1 | 221 | 3.43e-11 | 61.2 |
Find 49 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTGCTTTCTTTGGGAAAA+TGG | 0.109042 | 8.3:-69852819 | MS.gene051083:CDS |
| TTGAAGGAAAAGAGAATTTC+TGG | 0.175716 | 8.3:-69852851 | MS.gene051083:CDS |
| GATTCTACACCTGCTTTCTT+TGG | 0.212849 | 8.3:-69852827 | MS.gene051083:CDS |
| TTAAGAAGTGAAGCTCTTCT+TGG | 0.236604 | 8.3:+69850929 | None:intergenic |
| GTGTTTGTTTGAGGAATTTC+GGG | 0.278263 | 8.3:+69851132 | None:intergenic |
| AACTAATTTACCTGAACATT+TGG | 0.278582 | 8.3:+69851077 | None:intergenic |
| TCCTTGTTCGGTTGTTTCTA+AGG | 0.284638 | 8.3:+69851107 | None:intergenic |
| GAACTTCTCCGGTGCCTTAC+CGG | 0.289709 | 8.3:+69852910 | None:intergenic |
| AGTGTTTGTTTGAGGAATTT+CGG | 0.311669 | 8.3:+69851131 | None:intergenic |
| TGATCGGAAGAATTATCTTT+AGG | 0.316360 | 8.3:+69850707 | None:intergenic |
| AGAGGACCCTATCAAATTAA+TGG | 0.329656 | 8.3:-69850764 | MS.gene051083:CDS |
| TTTGTGACCATTAATTTGAT+AGG | 0.341555 | 8.3:+69850757 | None:intergenic |
| CAATTGACGATATTCTATTC+CGG | 0.343572 | 8.3:-69851294 | MS.gene051083:CDS |
| TTTGGCTTGGTTTCCTTGTT+CGG | 0.349316 | 8.3:+69851095 | None:intergenic |
| ATTCTACACCTGCTTTCTTT+GGG | 0.379166 | 8.3:-69852826 | MS.gene051083:CDS |
| GGAAACCAAGCCAAATGTTC+AGG | 0.389691 | 8.3:-69851087 | MS.gene051083:intron |
| CACTAGTGACCGGTGCACTT+GGG | 0.400373 | 8.3:+69851169 | None:intergenic |
| AATTGACGATATTCTATTCC+GGG | 0.411302 | 8.3:-69851293 | MS.gene051083:CDS |
| TCACTAGTGACCGGTGCACT+TGG | 0.422956 | 8.3:+69851168 | None:intergenic |
| AACTAAATCACTATAAGTTA+AGG | 0.443726 | 8.3:+69850678 | None:intergenic |
| GTGCCTTACCGGTGAGTCTC+CGG | 0.457733 | 8.3:+69852921 | None:intergenic |
| TGTGAAAATTTGAACTTCTC+CGG | 0.466884 | 8.3:+69852899 | None:intergenic |
| TCTAAGGCAGTGTTTGTTTG+AGG | 0.469946 | 8.3:+69851123 | None:intergenic |
| TTTGGGAAAATGGAACCTAA+AGG | 0.472484 | 8.3:-69852809 | MS.gene051083:intron |
| TTGTGACCATTAATTTGATA+GGG | 0.477946 | 8.3:+69850758 | None:intergenic |
| ACTAGTGACCGGTGCACTTG+GGG | 0.487227 | 8.3:+69851170 | None:intergenic |
| TACGAATGCAACTGAGATCA+TGG | 0.488655 | 8.3:-69851241 | MS.gene051083:CDS |
| CCAACATGCAAAACTCAGAT+GGG | 0.513652 | 8.3:-69852475 | MS.gene051083:CDS |
| ATTTACCTGAACATTTGGCT+TGG | 0.519424 | 8.3:+69851082 | None:intergenic |
| GTATTAGACTTCTTAATGCA+AGG | 0.531343 | 8.3:+69852398 | None:intergenic |
| TGAATCTCTTCCTCAGCTTG+TGG | 0.531942 | 8.3:-69852426 | MS.gene051083:CDS |
| CTAATACTGTGTCAGATGGC+CGG | 0.536232 | 8.3:-69852940 | MS.gene051083:CDS |
| GCCAACATGCAAAACTCAGA+TGG | 0.537855 | 8.3:-69852476 | MS.gene051083:CDS |
| CTAGTGACCGGTGCACTTGG+GGG | 0.549856 | 8.3:+69851171 | None:intergenic |
| TCAGATGGCCGGAGACTCAC+CGG | 0.554978 | 8.3:-69852929 | MS.gene051083:CDS |
| TGCAACTGAGATCATGGAGT+TGG | 0.557096 | 8.3:-69851235 | MS.gene051083:CDS |
| TAAGTTAAGGTCGAATTGAT+CGG | 0.557387 | 8.3:+69850691 | None:intergenic |
| GAGACTCACCGGTAAGGCAC+CGG | 0.568974 | 8.3:-69852918 | MS.gene051083:CDS |
| TAGTGACCGGTGCACTTGGG+GGG | 0.574627 | 8.3:+69851172 | None:intergenic |
| TTCTTGAGAAAAGAAAAGAA+AGG | 0.582036 | 8.3:-69850904 | MS.gene051083:intron |
| GAATAGAATATCGTCAATTG+TGG | 0.583205 | 8.3:+69851297 | None:intergenic |
| GCCTTAGAAACAACCGAACA+AGG | 0.584084 | 8.3:-69851108 | MS.gene051083:CDS |
| TGGCCGGAGACTCACCGGTA+AGG | 0.587038 | 8.3:-69852924 | MS.gene051083:CDS |
| TTAGCTAATACTGTGTCAGA+TGG | 0.590836 | 8.3:-69852944 | MS.gene051083:CDS |
| ATGATCTCAGTTGCATTCGT+AGG | 0.602248 | 8.3:+69851243 | None:intergenic |
| TGTTGCAGGGTCATTGCTAG+AGG | 0.603165 | 8.3:-69850782 | MS.gene051083:intron |
| CAACATGCAAAACTCAGATG+GGG | 0.638179 | 8.3:-69852474 | MS.gene051083:CDS |
| GCATTAAGAAGTCTAATACA+AGG | 0.639363 | 8.3:-69852394 | MS.gene051083:intron |
| AACATGCAAAACTCAGATGG+GGG | 0.692839 | 8.3:-69852473 | MS.gene051083:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATTAAAATTAAATA+AGG | + | chr8.3:69850958-69850977 | None:intergenic | 0.0% |
| !!! | TTTTTTTTTTTGTTACAAAA+TGG | - | chr8.3:69850972-69850991 | MS.gene051083:intron | 10.0% |
| !! | AAATATATATTGTAAGAGTT+TGG | - | chr8.3:69852263-69852282 | MS.gene051083:intron | 15.0% |
| !! | AAGATTATATATATACCTTT+AGG | + | chr8.3:69850850-69850869 | None:intergenic | 15.0% |
| !!! | ATATTGGTTAGAATAATAAT+TGG | - | chr8.3:69851907-69851926 | MS.gene051083:intron | 15.0% |
| !!! | TGTAAATTAATTTTATTGTG+AGG | + | chr8.3:69852162-69852181 | None:intergenic | 15.0% |
| !!! | TTCTTGTTTTATTTCTTATT+TGG | - | chr8.3:69850871-69850890 | MS.gene051083:intron | 15.0% |
| !!! | TTTAGAGTATCATTTTATTT+TGG | + | chr8.3:69852186-69852205 | None:intergenic | 15.0% |
| !!! | TTTAGTATTGGAAAATTATT+GGG | - | chr8.3:69851004-69851023 | MS.gene051083:intron | 15.0% |
| !! | AAGGAAATAAAATAAACAGA+CGG | + | chr8.3:69852789-69852808 | None:intergenic | 20.0% |
| !! | CAAGATTCAATTAATTAACA+TGG | + | chr8.3:69852836-69852855 | None:intergenic | 20.0% |
| !! | GTATTTCTTAGTAATTTCAT+AGG | + | chr8.3:69851380-69851399 | None:intergenic | 20.0% |
| !! | TAGATCTATTTATAACAAAG+TGG | - | chr8.3:69851525-69851544 | MS.gene051083:intron | 20.0% |
| !!! | AAATTTGTTTGATTGAAAAG+AGG | - | chr8.3:69852009-69852028 | MS.gene051083:intron | 20.0% |
| !!! | AATGTTTTTCCATGTAAATT+AGG | - | chr8.3:69851416-69851435 | MS.gene051083:intron | 20.0% |
| !!! | AATTTTTCATTTTGATCTTG+TGG | + | chr8.3:69851994-69852013 | None:intergenic | 20.0% |
| !!! | CAAAAATTGCTTTAATTTTC+TGG | - | chr8.3:69851354-69851373 | MS.gene051083:intron | 20.0% |
| !!! | GTTTAGTATTGGAAAATTAT+TGG | - | chr8.3:69851003-69851022 | MS.gene051083:intron | 20.0% |
| !!! | TAAATAAGTGTAGATTTGTT+TGG | - | chr8.3:69851836-69851855 | MS.gene051083:intron | 20.0% |
| !!! | TTTTTTTGTTACAAAATGGA+TGG | - | chr8.3:69850976-69850995 | MS.gene051083:intron | 20.0% |
| ! | AACCAAACAATTAATTGACA+AGG | + | chr8.3:69850923-69850942 | None:intergenic | 25.0% |
| ! | AACTAATTTACCTGAACATT+TGG | + | chr8.3:69852567-69852586 | None:intergenic | 25.0% |
| ! | AATTAATGGTCACAAAAATG+AGG | - | chr8.3:69852891-69852910 | MS.gene051083:CDS | 25.0% |
| ! | AGTTGTGAATCACTATTATT+GGG | - | chr8.3:69851035-69851054 | MS.gene051083:intron | 25.0% |
| ! | ATAAACAACAATAAGAACAC+TGG | + | chr8.3:69852294-69852313 | None:intergenic | 25.0% |
| ! | ATCTTGATTAAAACAATCGT+CGG | - | chr8.3:69851606-69851625 | MS.gene051083:intron | 25.0% |
| ! | ATTAATGGTCACAAAAATGA+GGG | - | chr8.3:69852892-69852911 | MS.gene051083:CDS | 25.0% |
| ! | CAAAAATAGACAACATACAA+AGG | + | chr8.3:69852808-69852827 | None:intergenic | 25.0% |
| ! | CTAACATGTATGTAAGAAAA+AGG | - | chr8.3:69852101-69852120 | MS.gene051083:intron | 25.0% |
| ! | TAGTTGTGAATCACTATTAT+TGG | - | chr8.3:69851034-69851053 | MS.gene051083:intron | 25.0% |
| ! | TTCTTGAGAAAAGAAAAGAA+AGG | - | chr8.3:69852737-69852756 | MS.gene051083:intron | 25.0% |
| !! | AGGTTGAAGTATTAATGATA+TGG | + | chr8.3:69852062-69852081 | None:intergenic | 25.0% |
| !! | ATGTAAATTAGGTTAGTCAT+GGG | - | chr8.3:69851427-69851446 | MS.gene051083:intron | 25.0% |
| !! | TACATGTTAGTGATCAATTT+TGG | + | chr8.3:69852091-69852110 | None:intergenic | 25.0% |
| !! | TTGTGACCATTAATTTGATA+GGG | + | chr8.3:69852886-69852905 | None:intergenic | 25.0% |
| !! | TTTGTGACCATTAATTTGAT+AGG | + | chr8.3:69852887-69852906 | None:intergenic | 25.0% |
| !!! | GATACAATTCAGTTTTGAAA+AGG | - | chr8.3:69851462-69851481 | MS.gene051083:intron | 25.0% |
| !!! | TGGAAAAACATTTTGATAGT+AGG | + | chr8.3:69851408-69851427 | None:intergenic | 25.0% |
| !!! | TGTATGTTGTCTATTTTTGT+TGG | - | chr8.3:69852809-69852828 | MS.gene051083:intron | 25.0% |
| !!! | TTTAATTTTTCACTAGTGAC+CGG | + | chr8.3:69852485-69852504 | None:intergenic | 25.0% |
| AATTGACGATATTCTATTCC+GGG | - | chr8.3:69852348-69852367 | MS.gene051083:intron | 30.0% | |
| AGTGTTTGTTTGAGGAATTT+CGG | + | chr8.3:69852513-69852532 | None:intergenic | 30.0% | |
| ATTGAATCTTGAATTGTTGC+AGG | - | chr8.3:69852845-69852864 | MS.gene051083:CDS | 30.0% | |
| CAATTGACGATATTCTATTC+CGG | - | chr8.3:69852347-69852366 | MS.gene051083:intron | 30.0% | |
| CATGACTAACCTAATTTACA+TGG | + | chr8.3:69851428-69851447 | None:intergenic | 30.0% | |
| GAATAGAATATCGTCAATTG+TGG | + | chr8.3:69852347-69852366 | None:intergenic | 30.0% | |
| GAGAAAAGAAAAGAAAGGTA+TGG | - | chr8.3:69852742-69852761 | MS.gene051083:intron | 30.0% | |
| GCATTAAGAAGTCTAATACA+AGG | - | chr8.3:69851247-69851266 | MS.gene051083:CDS | 30.0% | |
| GGTCACTAGTGAAAAATTAA+AGG | - | chr8.3:69852484-69852503 | MS.gene051083:CDS | 30.0% | |
| GTATTAGACTTCTTAATGCA+AGG | + | chr8.3:69851246-69851265 | None:intergenic | 30.0% | |
| TAAGTTAAGGTCGAATTGAT+CGG | + | chr8.3:69852953-69852972 | None:intergenic | 30.0% | |
| TAGCAAAAGTCGAATTGTTT+GGG | - | chr8.3:69851708-69851727 | MS.gene051083:intron | 30.0% | |
| TGATCGGAAGAATTATCTTT+AGG | + | chr8.3:69852937-69852956 | None:intergenic | 30.0% | |
| TGCCTTGTCAATTAATTGTT+TGG | - | chr8.3:69850918-69850937 | MS.gene051083:CDS | 30.0% | |
| TGTGAAAATTTGAACTTCTC+CGG | + | chr8.3:69850745-69850764 | None:intergenic | 30.0% | |
| TTAGCAAAAGTCGAATTGTT+TGG | - | chr8.3:69851707-69851726 | MS.gene051083:intron | 30.0% | |
| TTGAAGGAAAAGAGAATTTC+TGG | - | chr8.3:69850790-69850809 | MS.gene051083:intron | 30.0% | |
| TTGAATCTTGAATTGTTGCA+GGG | - | chr8.3:69852846-69852865 | MS.gene051083:CDS | 30.0% | |
| TTGCATGCTTTGTAATGTTT+CGG | + | chr8.3:69852636-69852655 | None:intergenic | 30.0% | |
| TTGTTACAAAATGGATGGTT+TGG | - | chr8.3:69850981-69851000 | MS.gene051083:intron | 30.0% | |
| ! | AACAGATCTAGACTTCTTTT+TGG | + | chr8.3:69851674-69851693 | None:intergenic | 30.0% |
| ! | AGGTATTGTTGTGTTAAGTT+TGG | - | chr8.3:69852121-69852140 | MS.gene051083:intron | 30.0% |
| ! | CATGTAAATTAGGTTAGTCA+TGG | - | chr8.3:69851426-69851445 | MS.gene051083:intron | 30.0% |
| ! | CGGAAAGAGAAATTTTTAAC+TGG | + | chr8.3:69852769-69852788 | None:intergenic | 30.0% |
| ! | GTCAAATACTAACATTTTCC+CGG | + | chr8.3:69852369-69852388 | None:intergenic | 30.0% |
| !! | GATTTTTCTAGCAAGTACAA+AGG | - | chr8.3:69851134-69851153 | MS.gene051083:CDS | 30.0% |
| !! | GTTTTGATCTTCTAGTCTAA+GGG | + | chr8.3:69851814-69851833 | None:intergenic | 30.0% |
| !! | TGTTAGTGATCAATTTTGGT+TGG | + | chr8.3:69852087-69852106 | None:intergenic | 30.0% |
| !!! | AGTTTGCTGATTGTGTTTTT+TGG | - | chr8.3:69851106-69851125 | MS.gene051083:CDS | 30.0% |
| !!! | GTTAGTGATCAATTTTGGTT+GGG | + | chr8.3:69852086-69852105 | None:intergenic | 30.0% |
| AAAAATGAGGGTAGTAGTTC+TGG | - | chr8.3:69852904-69852923 | MS.gene051083:CDS | 35.0% | |
| AGAGGACCCTATCAAATTAA+TGG | - | chr8.3:69852877-69852896 | MS.gene051083:CDS | 35.0% | |
| ATTCTACACCTGCTTTCTTT+GGG | - | chr8.3:69850815-69850834 | MS.gene051083:intron | 35.0% | |
| ATTTACCTGAACATTTGGCT+TGG | + | chr8.3:69852562-69852581 | None:intergenic | 35.0% | |
| CTAAACTCGTTGAACATCAA+TGG | - | chr8.3:69852201-69852220 | MS.gene051083:intron | 35.0% | |
| CTTCTAGTCTAAGGGAAATT+GGG | + | chr8.3:69851806-69851825 | None:intergenic | 35.0% | |
| GTAGTACTCGAGTTCAATAT+TGG | - | chr8.3:69851891-69851910 | MS.gene051083:intron | 35.0% | |
| GTGTTTGTTTGAGGAATTTC+GGG | + | chr8.3:69852512-69852531 | None:intergenic | 35.0% | |
| TAAAATCGTGAATCAGTGAG+AGG | - | chr8.3:69851641-69851660 | MS.gene051083:intron | 35.0% | |
| TCTAGACATCTAATGACAAG+TGG | + | chr8.3:69851509-69851528 | None:intergenic | 35.0% | |
| TCTTCTAGTCTAAGGGAAAT+TGG | + | chr8.3:69851807-69851826 | None:intergenic | 35.0% | |
| TTAAGAAGTGAAGCTCTTCT+TGG | + | chr8.3:69852715-69852734 | None:intergenic | 35.0% | |
| TTAGCTAAGGCCTAATTGTT+CGG | - | chr8.3:69851868-69851887 | MS.gene051083:intron | 35.0% | |
| TTAGCTAATACTGTGTCAGA+TGG | - | chr8.3:69850697-69850716 | MS.gene051083:CDS | 35.0% | |
| TTATAACAAAGTGGCGCAAT+TGG | - | chr8.3:69851534-69851553 | MS.gene051083:intron | 35.0% | |
| TTTATTGTGAGGTTGAGATC+TGG | + | chr8.3:69852151-69852170 | None:intergenic | 35.0% | |
| TTTGGGAAAATGGAACCTAA+AGG | - | chr8.3:69850832-69850851 | MS.gene051083:intron | 35.0% | |
| ! | ATCGTCAATTGTGGAGTTTT+AGG | + | chr8.3:69852338-69852357 | None:intergenic | 35.0% |
| ! | ATTTTCAGAGGCTAATTTGG+TGG | + | chr8.3:69852432-69852451 | None:intergenic | 35.0% |
| ! | TAGCTTAGGTCGAAATGTTT+TGG | - | chr8.3:69851568-69851587 | MS.gene051083:intron | 35.0% |
| ! | TGGATTTTCAGAGGCTAATT+TGG | + | chr8.3:69852435-69852454 | None:intergenic | 35.0% |
| !! | CGTTTTGATCTTCTAGTCTA+AGG | + | chr8.3:69851815-69851834 | None:intergenic | 35.0% |
| !! | TCTTTTGAGTCAGTTCTTGA+AGG | - | chr8.3:69850774-69850793 | MS.gene051083:CDS | 35.0% |
| !! | TGGATGGTTTGGTTTAGTAT+TGG | - | chr8.3:69850992-69851011 | MS.gene051083:intron | 35.0% |
| !!! | CTGATTGTGTTTTTTGGTTG+TGG | - | chr8.3:69851112-69851131 | MS.gene051083:CDS | 35.0% |
| AACATGCAAAACTCAGATGG+GGG | - | chr8.3:69851168-69851187 | MS.gene051083:CDS | 40.0% | |
| ACTCGTTGAACATCAATGGT+AGG | - | chr8.3:69852205-69852224 | MS.gene051083:intron | 40.0% | |
| AGACATCTAATGACAAGTGG+TGG | + | chr8.3:69851506-69851525 | None:intergenic | 40.0% | |
| AGTCTAAGGGAAATTGGGTT+CGG | + | chr8.3:69851801-69851820 | None:intergenic | 40.0% | |
| ATGATCTCAGTTGCATTCGT+AGG | + | chr8.3:69852401-69852420 | None:intergenic | 40.0% | |
| CAACATGCAAAACTCAGATG+GGG | - | chr8.3:69851167-69851186 | MS.gene051083:CDS | 40.0% | |
| CACAATCAGCAAACTTTCAC+AGG | + | chr8.3:69851101-69851120 | None:intergenic | 40.0% | |
| CCAACATGCAAAACTCAGAT+GGG | - | chr8.3:69851166-69851185 | MS.gene051083:CDS | 40.0% | |
| GAACAATTAGGCCTTAGCTA+AGG | + | chr8.3:69851869-69851888 | None:intergenic | 40.0% | |
| GATTCTACACCTGCTTTCTT+TGG | - | chr8.3:69850814-69850833 | MS.gene051083:intron | 40.0% | |
| GTAGTACTTGAGTTCGATCT+TGG | - | chr8.3:69851730-69851749 | MS.gene051083:intron | 40.0% | |
| TACGAATGCAACTGAGATCA+TGG | - | chr8.3:69852400-69852419 | MS.gene051083:CDS | 40.0% | |
| TACTTGAGTTCGATCTTGGT+TGG | - | chr8.3:69851734-69851753 | MS.gene051083:intron | 40.0% | |
| TAGCTAAGGCCTAATTGTTC+GGG | - | chr8.3:69851869-69851888 | MS.gene051083:intron | 40.0% | |
| TCCACAGTGAAATTCAGTCT+CGG | + | chr8.3:69851971-69851990 | None:intergenic | 40.0% | |
| ! | AAATTAGGTTAGTCATGGGC+TGG | - | chr8.3:69851431-69851450 | MS.gene051083:intron | 40.0% |
| ! | ACCTGCTTTCTTTGGGAAAA+TGG | - | chr8.3:69850822-69850841 | MS.gene051083:intron | 40.0% |
| ! | TCCATTTTCCCAAAGAAAGC+AGG | + | chr8.3:69850826-69850845 | None:intergenic | 40.0% |
| ! | TCTAAGGCAGTGTTTGTTTG+AGG | + | chr8.3:69852521-69852540 | None:intergenic | 40.0% |
| !! | TCCTTGTTCGGTTGTTTCTA+AGG | + | chr8.3:69852537-69852556 | None:intergenic | 40.0% |
| !! | TTTGGCTTGGTTTCCTTGTT+CGG | + | chr8.3:69852549-69852568 | None:intergenic | 40.0% |
| !!! | GTGATCAATTTTGGTTGGGA+AGG | + | chr8.3:69852082-69852101 | None:intergenic | 40.0% |
| CGAGTACTACCCGAACAATT+AGG | + | chr8.3:69851881-69851900 | None:intergenic | 45.0% | |
| CTAATACTGTGTCAGATGGC+CGG | - | chr8.3:69850701-69850720 | MS.gene051083:CDS | 45.0% | |
| GCCAACATGCAAAACTCAGA+TGG | - | chr8.3:69851165-69851184 | MS.gene051083:CDS | 45.0% | |
| GCCTTAGAAACAACCGAACA+AGG | - | chr8.3:69852533-69852552 | MS.gene051083:intron | 45.0% | |
| GGAAACCAAGCCAAATGTTC+AGG | - | chr8.3:69852554-69852573 | MS.gene051083:intron | 45.0% | |
| TGAATCTCTTCCTCAGCTTG+TGG | - | chr8.3:69851215-69851234 | MS.gene051083:CDS | 45.0% | |
| TGCAACTGAGATCATGGAGT+TGG | - | chr8.3:69852406-69852425 | MS.gene051083:CDS | 45.0% | |
| ! | CAAGGATTTTCCACAAGCTG+AGG | + | chr8.3:69851228-69851247 | None:intergenic | 45.0% |
| ! | CCCATCTGAGTTTTGCATGT+TGG | + | chr8.3:69851169-69851188 | None:intergenic | 45.0% |
| ! | TGGTTAATGCGCGTTAGCTT+AGG | - | chr8.3:69851554-69851573 | MS.gene051083:intron | 45.0% |
| ! | TTCAGCGCTTGGATTTTCAG+AGG | + | chr8.3:69852444-69852463 | None:intergenic | 45.0% |
| !! | TTGGTTCTACGCCTTAGCTA+AGG | - | chr8.3:69851855-69851874 | MS.gene051083:intron | 45.0% |
| GCCGAGACTGAATTTCACTG+TGG | - | chr8.3:69851967-69851986 | MS.gene051083:intron | 50.0% | |
| TGTTGCAGGGTCATTGCTAG+AGG | - | chr8.3:69852859-69852878 | MS.gene051083:CDS | 50.0% | |
| ACTAGTGACCGGTGCACTTG+GGG | + | chr8.3:69852474-69852493 | None:intergenic | 55.0% | |
| AGAAAACCCCCCAAGTGCAC+CGG | - | chr8.3:69852463-69852482 | MS.gene051083:CDS | 55.0% | |
| CACTAGTGACCGGTGCACTT+GGG | + | chr8.3:69852475-69852494 | None:intergenic | 55.0% | |
| GAACTTCTCCGGTGCCTTAC+CGG | + | chr8.3:69850734-69850753 | None:intergenic | 55.0% | |
| TCACTAGTGACCGGTGCACT+TGG | + | chr8.3:69852476-69852495 | None:intergenic | 55.0% | |
| CTAGTGACCGGTGCACTTGG+GGG | + | chr8.3:69852473-69852492 | None:intergenic | 60.0% | |
| GAGACTCACCGGTAAGGCAC+CGG | - | chr8.3:69850723-69850742 | MS.gene051083:CDS | 60.0% | |
| GTGCCTTACCGGTGAGTCTC+CGG | + | chr8.3:69850723-69850742 | None:intergenic | 60.0% | |
| TAGTGACCGGTGCACTTGGG+GGG | + | chr8.3:69852472-69852491 | None:intergenic | 60.0% | |
| TCAGATGGCCGGAGACTCAC+CGG | - | chr8.3:69850712-69850731 | MS.gene051083:CDS | 60.0% | |
| ! | GGGGGGTTTTCTTCAGCGCT+TGG | + | chr8.3:69852455-69852474 | None:intergenic | 60.0% |
| TGGCCGGAGACTCACCGGTA+AGG | - | chr8.3:69850717-69850736 | MS.gene051083:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 69850688 | 69852975 | 69850688 | ID=MS.gene051083 |
| chr8.3 | mRNA | 69850688 | 69852975 | 69850688 | ID=MS.gene051083.t1;Parent=MS.gene051083 |
| chr8.3 | exon | 69852810 | 69852975 | 69852810 | ID=MS.gene051083.t1.exon1;Parent=MS.gene051083.t1 |
| chr8.3 | CDS | 69852810 | 69852975 | 69852810 | ID=cds.MS.gene051083.t1;Parent=MS.gene051083.t1 |
| chr8.3 | exon | 69852395 | 69852518 | 69852395 | ID=MS.gene051083.t1.exon2;Parent=MS.gene051083.t1 |
| chr8.3 | CDS | 69852395 | 69852518 | 69852395 | ID=cds.MS.gene051083.t1;Parent=MS.gene051083.t1 |
| chr8.3 | exon | 69851088 | 69851338 | 69851088 | ID=MS.gene051083.t1.exon3;Parent=MS.gene051083.t1 |
| chr8.3 | CDS | 69851088 | 69851338 | 69851088 | ID=cds.MS.gene051083.t1;Parent=MS.gene051083.t1 |
| chr8.3 | exon | 69850905 | 69850962 | 69850905 | ID=MS.gene051083.t1.exon4;Parent=MS.gene051083.t1 |
| chr8.3 | CDS | 69850905 | 69850962 | 69850905 | ID=cds.MS.gene051083.t1;Parent=MS.gene051083.t1 |
| chr8.3 | exon | 69850688 | 69850796 | 69850688 | ID=MS.gene051083.t1.exon5;Parent=MS.gene051083.t1 |
| chr8.3 | CDS | 69850688 | 69850796 | 69850688 | ID=cds.MS.gene051083.t1;Parent=MS.gene051083.t1 |
| Gene Sequence |
| Protein sequence |
