Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25093.t1 | XP_013444474.1 | 95.3 | 235 | 11 | 0 | 1 | 235 | 1 | 235 | 1.40E-118 | 435.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25093.t1 | Q9C9E3 | 34.1 | 220 | 115 | 5 | 15 | 212 | 3 | 214 | 1.6e-17 | 91.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25093.t1 | I3T425 | 95.3 | 235 | 11 | 0 | 1 | 235 | 1 | 235 | 1.0e-118 | 435.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene25093.t1 | TF | Tify |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051083 | MS.gene25093 | 0.822964 | 1.79E-53 | -1.69E-46 |
| MS.gene057422 | MS.gene25093 | 0.821867 | 3.21E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25093.t1 | MTR_8g021380 | 95.319 | 235 | 11 | 0 | 1 | 235 | 1 | 235 | 8.38e-167 | 459 |
| MS.gene25093.t1 | MTR_8g021380 | 78.838 | 241 | 10 | 1 | 1 | 200 | 1 | 241 | 1.22e-130 | 369 |
| MS.gene25093.t1 | MTR_2g042900 | 32.900 | 231 | 118 | 7 | 11 | 210 | 12 | 236 | 1.34e-22 | 92.8 |
| MS.gene25093.t1 | MTR_2g042900 | 28.685 | 251 | 112 | 7 | 11 | 200 | 12 | 256 | 1.97e-14 | 70.9 |
| MS.gene25093.t1 | MTR_5g013530 | 33.071 | 127 | 70 | 4 | 85 | 208 | 24 | 138 | 6.03e-14 | 67.8 |
| MS.gene25093.t1 | MTR_5g013530 | 33.884 | 121 | 65 | 4 | 91 | 208 | 8 | 116 | 1.19e-13 | 66.6 |
| MS.gene25093.t1 | MTR_5g013520 | 32.258 | 124 | 63 | 3 | 91 | 208 | 1 | 109 | 1.64e-12 | 63.5 |
| MS.gene25093.t1 | MTR_4g124960 | 30.693 | 202 | 100 | 7 | 11 | 208 | 12 | 177 | 3.83e-12 | 63.5 |
| MS.gene25093.t1 | MTR_5g013515 | 31.034 | 116 | 77 | 1 | 93 | 208 | 2 | 114 | 4.18e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25093.t1 | AT1G72450 | 35.000 | 220 | 113 | 7 | 15 | 212 | 3 | 214 | 3.48e-24 | 97.4 |
| MS.gene25093.t1 | AT1G19180 | 33.036 | 224 | 115 | 8 | 12 | 209 | 14 | 228 | 4.68e-19 | 83.6 |
| MS.gene25093.t1 | AT1G19180 | 33.036 | 224 | 115 | 8 | 12 | 209 | 14 | 228 | 4.68e-19 | 83.6 |
| MS.gene25093.t1 | AT1G17380 | 33.180 | 217 | 110 | 8 | 17 | 212 | 11 | 213 | 1.40e-18 | 82.4 |
| MS.gene25093.t1 | AT1G72450 | 33.173 | 208 | 109 | 6 | 15 | 200 | 3 | 202 | 3.76e-18 | 80.1 |
| MS.gene25093.t1 | AT1G74950 | 29.600 | 250 | 142 | 9 | 1 | 223 | 1 | 243 | 1.20e-16 | 77.0 |
| MS.gene25093.t1 | AT1G19180 | 36.207 | 116 | 70 | 3 | 96 | 209 | 49 | 162 | 3.14e-13 | 66.2 |
| MS.gene25093.t1 | AT1G17380 | 34.194 | 155 | 77 | 5 | 99 | 230 | 63 | 215 | 8.45e-13 | 66.2 |
| MS.gene25093.t1 | AT1G17380 | 31.220 | 205 | 109 | 7 | 16 | 202 | 10 | 200 | 8.59e-13 | 65.9 |
| MS.gene25093.t1 | AT1G74950 | 28.634 | 227 | 129 | 8 | 1 | 200 | 1 | 221 | 2.87e-11 | 61.6 |
Find 48 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTGCTTTCTTTGGGAAAA+TGG | 0.109042 | 8.4:-72325909 | MS.gene25093:CDS |
| TTGAAGGAAAAGAGAATTTC+TGG | 0.175716 | 8.4:-72325941 | MS.gene25093:CDS |
| GATTCTACACCTGCTTTCTT+TGG | 0.212849 | 8.4:-72325917 | MS.gene25093:CDS |
| TTAAGAAGTGAAGCTCTTCT+TGG | 0.236604 | 8.4:+72324034 | None:intergenic |
| CAATTGACGATATTCTATTC+TGG | 0.252458 | 8.4:-72324399 | MS.gene25093:CDS |
| GTGTTTGTTTGAGGAATTTC+GGG | 0.278263 | 8.4:+72324237 | None:intergenic |
| AACTAATTTACCTGAACATT+TGG | 0.278582 | 8.4:+72324182 | None:intergenic |
| GAACTTCTCCGGTGCCTTAC+CGG | 0.289709 | 8.4:+72326000 | None:intergenic |
| TCCTTGTTCGATTGTTTCTA+AGG | 0.291189 | 8.4:+72324212 | None:intergenic |
| AGTGTTTGTTTGAGGAATTT+CGG | 0.311669 | 8.4:+72324236 | None:intergenic |
| TGATCGGAAGAATTATCTTT+AGG | 0.316360 | 8.4:+72323812 | None:intergenic |
| AGAGGACCCTATCAAATTAA+TGG | 0.329656 | 8.4:-72323869 | MS.gene25093:CDS |
| TTTGTGACCATTAATTTGAT+AGG | 0.341555 | 8.4:+72323862 | None:intergenic |
| ATTCTACACCTGCTTTCTTT+GGG | 0.379166 | 8.4:-72325916 | MS.gene25093:CDS |
| GGAAACCAAGCCAAATGTTC+AGG | 0.389691 | 8.4:-72324192 | MS.gene25093:intron |
| CACTAGTGACCGGTGCACTT+GGG | 0.400373 | 8.4:+72324274 | None:intergenic |
| AATTGACGATATTCTATTCT+GGG | 0.405626 | 8.4:-72324398 | MS.gene25093:CDS |
| TCACTAGTGACCGGTGCACT+TGG | 0.422956 | 8.4:+72324273 | None:intergenic |
| AACTAAATCACTATAAGTTA+AGG | 0.443726 | 8.4:+72323783 | None:intergenic |
| GTGCCTTACCGGTGAGTCTC+CGG | 0.457733 | 8.4:+72326011 | None:intergenic |
| TGTGAAAATTTGAACTTCTC+CGG | 0.466884 | 8.4:+72325989 | None:intergenic |
| TCTAAGGCAGTGTTTGTTTG+AGG | 0.469946 | 8.4:+72324228 | None:intergenic |
| TTTGGGAAAATGGAACCTAA+AGG | 0.472484 | 8.4:-72325899 | MS.gene25093:intron |
| TTGTGACCATTAATTTGATA+GGG | 0.477946 | 8.4:+72323863 | None:intergenic |
| ACTAGTGACCGGTGCACTTG+GGG | 0.487227 | 8.4:+72324275 | None:intergenic |
| TACGAATGCAACTGAGATCA+TGG | 0.488655 | 8.4:-72324346 | MS.gene25093:CDS |
| CCAACATGCAAAACTCAGAT+GGG | 0.513652 | 8.4:-72325562 | MS.gene25093:CDS |
| ATTTACCTGAACATTTGGCT+TGG | 0.519424 | 8.4:+72324187 | None:intergenic |
| GTATTAGACTTCTTAATGCA+AGG | 0.531343 | 8.4:+72325485 | None:intergenic |
| TGAATCTCTTCCTCAGCTTG+TGG | 0.531942 | 8.4:-72325513 | MS.gene25093:CDS |
| CTAATACTGTGTCAGATGGC+CGG | 0.536232 | 8.4:-72326030 | MS.gene25093:CDS |
| GCCAACATGCAAAACTCAGA+TGG | 0.537855 | 8.4:-72325563 | MS.gene25093:CDS |
| CTAGTGACCGGTGCACTTGG+GGG | 0.549856 | 8.4:+72324276 | None:intergenic |
| TCAGATGGCCGGAGACTCAC+CGG | 0.554978 | 8.4:-72326019 | MS.gene25093:CDS |
| TGCAACTGAGATCATGGAGT+TGG | 0.557096 | 8.4:-72324340 | MS.gene25093:CDS |
| TAAGTTAAGGTCGAATTGAT+CGG | 0.557387 | 8.4:+72323796 | None:intergenic |
| GAGACTCACCGGTAAGGCAC+CGG | 0.568974 | 8.4:-72326008 | MS.gene25093:CDS |
| TAGTGACCGGTGCACTTGGG+GGG | 0.574627 | 8.4:+72324277 | None:intergenic |
| TTCTTGAGAAAAGAAAAGAA+AGG | 0.582036 | 8.4:-72324009 | MS.gene25093:intron |
| GAATAGAATATCGTCAATTG+TGG | 0.583205 | 8.4:+72324402 | None:intergenic |
| TGGCCGGAGACTCACCGGTA+AGG | 0.587038 | 8.4:-72326014 | MS.gene25093:CDS |
| TTAGCTAATACTGTGTCAGA+TGG | 0.590836 | 8.4:-72326034 | MS.gene25093:CDS |
| ATGATCTCAGTTGCATTCGT+AGG | 0.602248 | 8.4:+72324348 | None:intergenic |
| TGTTGCAGGGTCATTGCTAG+AGG | 0.603165 | 8.4:-72323887 | MS.gene25093:intron |
| CAACATGCAAAACTCAGATG+GGG | 0.638179 | 8.4:-72325561 | MS.gene25093:CDS |
| GCATTAAGAAGTCTAATACA+AGG | 0.639363 | 8.4:-72325481 | MS.gene25093:intron |
| GCCTTAGAAACAATCGAACA+AGG | 0.645101 | 8.4:-72324213 | MS.gene25093:CDS |
| AACATGCAAAACTCAGATGG+GGG | 0.692839 | 8.4:-72325560 | MS.gene25093:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAATAAAATTAAATA+AGG | + | chr8.4:72324087-72324106 | None:intergenic | 0.0% |
| !!! | AATTTTAATTTTAATTTTTT+TGG | - | chr8.4:72324015-72324034 | MS.gene25093:CDS | 0.0% |
| !!! | ATTATTATTTTGTTACAAAA+TGG | - | chr8.4:72324098-72324117 | MS.gene25093:intron | 10.0% |
| !! | TCAATATTGTAAGAAATATT+CGG | - | chr8.4:72325292-72325311 | MS.gene25093:intron | 15.0% |
| !!! | ATATTGGTTAGAATAATAAT+TGG | - | chr8.4:72324982-72325001 | MS.gene25093:intron | 15.0% |
| !!! | TGTAAATTAATTTTATTGTG+AGG | + | chr8.4:72325237-72325256 | None:intergenic | 15.0% |
| !!! | TTAATGTTTTATTTCTTACT+TGG | - | chr8.4:72323985-72324004 | MS.gene25093:intron | 15.0% |
| !!! | TTTAGAGTATCATTTTATTT+TGG | + | chr8.4:72325261-72325280 | None:intergenic | 15.0% |
| !!! | TTTAGTATTGGAAAATTATT+GGG | - | chr8.4:72324130-72324149 | MS.gene25093:intron | 15.0% |
| !! | AAATATATATTGCAAGAGTT+TGG | - | chr8.4:72325353-72325372 | MS.gene25093:intron | 20.0% |
| !! | AAGGAAATAAAATAAACAGA+CGG | + | chr8.4:72325879-72325898 | None:intergenic | 20.0% |
| !! | TAGATCTATTTATAACAAAG+TGG | - | chr8.4:72324600-72324619 | MS.gene25093:intron | 20.0% |
| !!! | AATGTTTTTCCATGTAAATT+AGG | - | chr8.4:72324491-72324510 | MS.gene25093:intron | 20.0% |
| !!! | GTTTAGTATTGGAAAATTAT+TGG | - | chr8.4:72324129-72324148 | MS.gene25093:intron | 20.0% |
| !!! | TAAATAAGTGTAGATTTGTT+TGG | - | chr8.4:72324911-72324930 | MS.gene25093:intron | 20.0% |
| ! | AACCAAACAATTAATTGACA+AGG | + | chr8.4:72324051-72324070 | None:intergenic | 25.0% |
| ! | AACTAATTTACCTGAACATT+TGG | + | chr8.4:72325657-72325676 | None:intergenic | 25.0% |
| ! | AAGAGAAAGATTATACCTTT+AGG | + | chr8.4:72323955-72323974 | None:intergenic | 25.0% |
| ! | AATTAATGGTCACAAAAATG+AGG | - | chr8.4:72325981-72326000 | MS.gene25093:CDS | 25.0% |
| ! | AATTGACGATATTCTATTCT+GGG | - | chr8.4:72325438-72325457 | MS.gene25093:intron | 25.0% |
| ! | ATCTTGATTAAAACAATCGT+CGG | - | chr8.4:72324681-72324700 | MS.gene25093:intron | 25.0% |
| ! | ATTAATGGTCACAAAAATGA+GGG | - | chr8.4:72325982-72326001 | MS.gene25093:CDS | 25.0% |
| ! | CAAAAATAGACAACATACAA+AGG | + | chr8.4:72325898-72325917 | None:intergenic | 25.0% |
| ! | CAAGATTCAATTAATTAGCA+TGG | + | chr8.4:72325926-72325945 | None:intergenic | 25.0% |
| ! | TATTGTAAGAAATATTCGGT+AGG | - | chr8.4:72325296-72325315 | MS.gene25093:intron | 25.0% |
| ! | TTCTTGAGAAAAGAAAAGAA+AGG | - | chr8.4:72325827-72325846 | MS.gene25093:intron | 25.0% |
| ! | TTGTTACAAAATGGATGATT+TGG | - | chr8.4:72324107-72324126 | MS.gene25093:intron | 25.0% |
| !! | AACAGATCTATACTTCTTTT+TGG | + | chr8.4:72324749-72324768 | None:intergenic | 25.0% |
| !! | AGATTTGTTTGATTGAAAAG+AGG | - | chr8.4:72325084-72325103 | MS.gene25093:intron | 25.0% |
| !! | AGGTTGAAGTATTAATGATA+TGG | + | chr8.4:72325137-72325156 | None:intergenic | 25.0% |
| !! | ATAATCTTTCTCTTGTTTCA+TGG | - | chr8.4:72323961-72323980 | MS.gene25093:intron | 25.0% |
| !! | ATGTAAATTAGGTTAGTCAT+GGG | - | chr8.4:72324502-72324521 | MS.gene25093:intron | 25.0% |
| !! | CGGAAATAGAAATTTTTAAC+TGG | + | chr8.4:72325859-72325878 | None:intergenic | 25.0% |
| !! | TACATGTTAGTGATCAATTT+TGG | + | chr8.4:72325166-72325185 | None:intergenic | 25.0% |
| !! | TTGTGACCATTAATTTGATA+GGG | + | chr8.4:72325976-72325995 | None:intergenic | 25.0% |
| !! | TTTGTGACCATTAATTTGAT+AGG | + | chr8.4:72325977-72325996 | None:intergenic | 25.0% |
| !!! | AATCTTTCATTTTGATCTTG+TGG | + | chr8.4:72325069-72325088 | None:intergenic | 25.0% |
| !!! | GATACAATTCAGTTTTGAAA+AGG | - | chr8.4:72324537-72324556 | MS.gene25093:intron | 25.0% |
| !!! | TGGAAAAACATTTTGATAGT+AGG | + | chr8.4:72324483-72324502 | None:intergenic | 25.0% |
| !!! | TGTATGTTGTCTATTTTTGT+TGG | - | chr8.4:72325899-72325918 | MS.gene25093:intron | 25.0% |
| !!! | TTTAATTTTTCACTAGTGAC+CGG | + | chr8.4:72325575-72325594 | None:intergenic | 25.0% |
| AGTGTTTGTTTGAGGAATTT+CGG | + | chr8.4:72325603-72325622 | None:intergenic | 30.0% | |
| ATTGAATCTTGAATTGTTGC+AGG | - | chr8.4:72325935-72325954 | MS.gene25093:CDS | 30.0% | |
| CAATTGACGATATTCTATTC+TGG | - | chr8.4:72325437-72325456 | MS.gene25093:intron | 30.0% | |
| CATGACTAACCTAATTTACA+TGG | + | chr8.4:72324503-72324522 | None:intergenic | 30.0% | |
| CTAACATGTATGTACGAAAA+AGG | - | chr8.4:72325176-72325195 | MS.gene25093:intron | 30.0% | |
| GAATAGAATATCGTCAATTG+TGG | + | chr8.4:72325437-72325456 | None:intergenic | 30.0% | |
| GAGAAAAGAAAAGAAAGGTA+TGG | - | chr8.4:72325832-72325851 | MS.gene25093:intron | 30.0% | |
| GCATTAAGAAGTCTAATACA+AGG | - | chr8.4:72324355-72324374 | MS.gene25093:CDS | 30.0% | |
| GGTCACTAGTGAAAAATTAA+AGG | - | chr8.4:72325574-72325593 | MS.gene25093:CDS | 30.0% | |
| GTATTAGACTTCTTAATGCA+AGG | + | chr8.4:72324354-72324373 | None:intergenic | 30.0% | |
| TAAGTTAAGGTCGAATTGAT+CGG | + | chr8.4:72326043-72326062 | None:intergenic | 30.0% | |
| TAGCAAAAGTCGAATTGTTT+GGG | - | chr8.4:72324783-72324802 | MS.gene25093:intron | 30.0% | |
| TGATCGGAAGAATTATCTTT+AGG | + | chr8.4:72326027-72326046 | None:intergenic | 30.0% | |
| TGCCTTGTCAATTAATTGTT+TGG | - | chr8.4:72324046-72324065 | MS.gene25093:CDS | 30.0% | |
| TGTGAAAATTTGAACTTCTC+CGG | + | chr8.4:72323850-72323869 | None:intergenic | 30.0% | |
| TTAGCAAAAGTCGAATTGTT+TGG | - | chr8.4:72324782-72324801 | MS.gene25093:intron | 30.0% | |
| TTGAAGGAAAAGAGAATTTC+TGG | - | chr8.4:72323895-72323914 | MS.gene25093:intron | 30.0% | |
| TTGAATCTTGAATTGTTGCA+GGG | - | chr8.4:72325936-72325955 | MS.gene25093:CDS | 30.0% | |
| TTGCATGCTTTGTAATGTTT+CGG | + | chr8.4:72325726-72325745 | None:intergenic | 30.0% | |
| ! | AGGTATTGTTGTGTTAAGTT+TGG | - | chr8.4:72325196-72325215 | MS.gene25093:intron | 30.0% |
| ! | CATGTAAATTAGGTTAGTCA+TGG | - | chr8.4:72324501-72324520 | MS.gene25093:intron | 30.0% |
| !! | GATTTTTCTAGCAAGTACAA+AGG | - | chr8.4:72324242-72324261 | MS.gene25093:CDS | 30.0% |
| !! | GTTTTGATCTTCTAGTCTAA+GGG | + | chr8.4:72324889-72324908 | None:intergenic | 30.0% |
| !! | TGGATGATTTGGTTTAGTAT+TGG | - | chr8.4:72324118-72324137 | MS.gene25093:intron | 30.0% |
| !! | TGTTAGTGATCAATTTTGGT+TGG | + | chr8.4:72325162-72325181 | None:intergenic | 30.0% |
| !!! | AGTTTGCTGATTGTGTTTTT+TGG | - | chr8.4:72324214-72324233 | MS.gene25093:CDS | 30.0% |
| !!! | GTTAGTGATCAATTTTGGTT+GGG | + | chr8.4:72325161-72325180 | None:intergenic | 30.0% |
| AAAAATGAGGGTAGTAGTTC+TGG | - | chr8.4:72325994-72326013 | MS.gene25093:CDS | 35.0% | |
| AGAGGACCCTATCAAATTAA+TGG | - | chr8.4:72325967-72325986 | MS.gene25093:CDS | 35.0% | |
| ATTCTACACCTGCTTTCTTT+GGG | - | chr8.4:72323920-72323939 | MS.gene25093:intron | 35.0% | |
| ATTTACCTGAACATTTGGCT+TGG | + | chr8.4:72325652-72325671 | None:intergenic | 35.0% | |
| CTTCTAGTCTAAGGGAAATT+GGG | + | chr8.4:72324881-72324900 | None:intergenic | 35.0% | |
| GTAGTACTCGAGTTCAATAT+TGG | - | chr8.4:72324966-72324985 | MS.gene25093:intron | 35.0% | |
| GTGTTTGTTTGAGGAATTTC+GGG | + | chr8.4:72325602-72325621 | None:intergenic | 35.0% | |
| TAAAATCGTGAATCAGTGAG+AGG | - | chr8.4:72324716-72324735 | MS.gene25093:intron | 35.0% | |
| TCTAGACATCTAATGACAAG+TGG | + | chr8.4:72324584-72324603 | None:intergenic | 35.0% | |
| TCTTCTAGTCTAAGGGAAAT+TGG | + | chr8.4:72324882-72324901 | None:intergenic | 35.0% | |
| TTAAGAAGTGAAGCTCTTCT+TGG | + | chr8.4:72325805-72325824 | None:intergenic | 35.0% | |
| TTAGCTAAGGCCTAATTGTT+CGG | - | chr8.4:72324943-72324962 | MS.gene25093:intron | 35.0% | |
| TTAGCTAATACTGTGTCAGA+TGG | - | chr8.4:72323802-72323821 | MS.gene25093:CDS | 35.0% | |
| TTATAACAAAGTGGCGCAAT+TGG | - | chr8.4:72324609-72324628 | MS.gene25093:intron | 35.0% | |
| TTTATTGTGAGGTTGAGATC+TGG | + | chr8.4:72325226-72325245 | None:intergenic | 35.0% | |
| TTTGGGAAAATGGAACCTAA+AGG | - | chr8.4:72323937-72323956 | MS.gene25093:intron | 35.0% | |
| ! | ATCGTCAATTGTGGAGTTTT+AGG | + | chr8.4:72325428-72325447 | None:intergenic | 35.0% |
| ! | ATTTTCAGAGGCTAATTTGG+TGG | + | chr8.4:72325522-72325541 | None:intergenic | 35.0% |
| ! | TAGCTTAGGTCGAAATGTTT+TGG | - | chr8.4:72324643-72324662 | MS.gene25093:intron | 35.0% |
| ! | TGGATTTTCAGAGGCTAATT+TGG | + | chr8.4:72325525-72325544 | None:intergenic | 35.0% |
| !! | CGTTTTGATCTTCTAGTCTA+AGG | + | chr8.4:72324890-72324909 | None:intergenic | 35.0% |
| !! | TCCTTGTTCGATTGTTTCTA+AGG | + | chr8.4:72325627-72325646 | None:intergenic | 35.0% |
| !! | TCTTTTGAGTCAGTTCTTGA+AGG | - | chr8.4:72323879-72323898 | MS.gene25093:CDS | 35.0% |
| !!! | CTGATTGTGTTTTTTGGTTG+TGG | - | chr8.4:72324220-72324239 | MS.gene25093:CDS | 35.0% |
| AACATGCAAAACTCAGATGG+GGG | - | chr8.4:72324276-72324295 | MS.gene25093:CDS | 40.0% | |
| AGACATCTAATGACAAGTGG+TGG | + | chr8.4:72324581-72324600 | None:intergenic | 40.0% | |
| AGTCTAAGGGAAATTGGGTT+CGG | + | chr8.4:72324876-72324895 | None:intergenic | 40.0% | |
| ATGATCTCAGTTGCATTCGT+AGG | + | chr8.4:72325491-72325510 | None:intergenic | 40.0% | |
| CAACATGCAAAACTCAGATG+GGG | - | chr8.4:72324275-72324294 | MS.gene25093:CDS | 40.0% | |
| CACAATCAGCAAACTTTCAC+AGG | + | chr8.4:72324209-72324228 | None:intergenic | 40.0% | |
| CCAACATGCAAAACTCAGAT+GGG | - | chr8.4:72324274-72324293 | MS.gene25093:CDS | 40.0% | |
| GAACAATTAGGCCTTAGCTA+AGG | + | chr8.4:72324944-72324963 | None:intergenic | 40.0% | |
| GATTCTACACCTGCTTTCTT+TGG | - | chr8.4:72323919-72323938 | MS.gene25093:intron | 40.0% | |
| GCCTTAGAAACAATCGAACA+AGG | - | chr8.4:72325623-72325642 | MS.gene25093:intron | 40.0% | |
| GTAGTACTTGAGTTCGATCT+TGG | - | chr8.4:72324805-72324824 | MS.gene25093:intron | 40.0% | |
| TACGAATGCAACTGAGATCA+TGG | - | chr8.4:72325490-72325509 | MS.gene25093:CDS | 40.0% | |
| TACTTGAGTTCGATCTTGGT+TGG | - | chr8.4:72324809-72324828 | MS.gene25093:intron | 40.0% | |
| TAGCTAAGGCCTAATTGTTC+GGG | - | chr8.4:72324944-72324963 | MS.gene25093:intron | 40.0% | |
| ! | AAATTAGGTTAGTCATGGGC+TGG | - | chr8.4:72324506-72324525 | MS.gene25093:intron | 40.0% |
| ! | ACCTGCTTTCTTTGGGAAAA+TGG | - | chr8.4:72323927-72323946 | MS.gene25093:intron | 40.0% |
| ! | TCCATTTTCCCAAAGAAAGC+AGG | + | chr8.4:72323931-72323950 | None:intergenic | 40.0% |
| ! | TCTAAGGCAGTGTTTGTTTG+AGG | + | chr8.4:72325611-72325630 | None:intergenic | 40.0% |
| !!! | GTGATCAATTTTGGTTGGGA+AGG | + | chr8.4:72325157-72325176 | None:intergenic | 40.0% |
| CGAGTACTACCCGAACAATT+AGG | + | chr8.4:72324956-72324975 | None:intergenic | 45.0% | |
| CTAATACTGTGTCAGATGGC+CGG | - | chr8.4:72323806-72323825 | MS.gene25093:CDS | 45.0% | |
| GCCAACATGCAAAACTCAGA+TGG | - | chr8.4:72324273-72324292 | MS.gene25093:CDS | 45.0% | |
| GGAAACCAAGCCAAATGTTC+AGG | - | chr8.4:72325644-72325663 | MS.gene25093:intron | 45.0% | |
| GTCGAGACTGAATTTCACTG+TGG | - | chr8.4:72325042-72325061 | MS.gene25093:intron | 45.0% | |
| TGAATCTCTTCCTCAGCTTG+TGG | - | chr8.4:72324323-72324342 | MS.gene25093:CDS | 45.0% | |
| TGCAACTGAGATCATGGAGT+TGG | - | chr8.4:72325496-72325515 | MS.gene25093:CDS | 45.0% | |
| ! | CAAGGATTTTCCACAAGCTG+AGG | + | chr8.4:72324336-72324355 | None:intergenic | 45.0% |
| ! | CCCATCTGAGTTTTGCATGT+TGG | + | chr8.4:72324277-72324296 | None:intergenic | 45.0% |
| ! | TGGTTAATGCGCGTTAGCTT+AGG | - | chr8.4:72324629-72324648 | MS.gene25093:intron | 45.0% |
| ! | TTCAGCGCTTGGATTTTCAG+AGG | + | chr8.4:72325534-72325553 | None:intergenic | 45.0% |
| TGTTGCAGGGTCATTGCTAG+AGG | - | chr8.4:72325949-72325968 | MS.gene25093:CDS | 50.0% | |
| !! | TTGGTTCTGCGCCTTAGCTA+AGG | - | chr8.4:72324930-72324949 | MS.gene25093:intron | 50.0% |
| ACTAGTGACCGGTGCACTTG+GGG | + | chr8.4:72325564-72325583 | None:intergenic | 55.0% | |
| AGAAAACCCCCCAAGTGCAC+CGG | - | chr8.4:72325553-72325572 | MS.gene25093:CDS | 55.0% | |
| CACTAGTGACCGGTGCACTT+GGG | + | chr8.4:72325565-72325584 | None:intergenic | 55.0% | |
| GAACTTCTCCGGTGCCTTAC+CGG | + | chr8.4:72323839-72323858 | None:intergenic | 55.0% | |
| TCACTAGTGACCGGTGCACT+TGG | + | chr8.4:72325566-72325585 | None:intergenic | 55.0% | |
| CTAGTGACCGGTGCACTTGG+GGG | + | chr8.4:72325563-72325582 | None:intergenic | 60.0% | |
| GAGACTCACCGGTAAGGCAC+CGG | - | chr8.4:72323828-72323847 | MS.gene25093:CDS | 60.0% | |
| GTGCCTTACCGGTGAGTCTC+CGG | + | chr8.4:72323828-72323847 | None:intergenic | 60.0% | |
| TAGTGACCGGTGCACTTGGG+GGG | + | chr8.4:72325562-72325581 | None:intergenic | 60.0% | |
| TCAGATGGCCGGAGACTCAC+CGG | - | chr8.4:72323817-72323836 | MS.gene25093:CDS | 60.0% | |
| ! | GGGGGGTTTTCTTCAGCGCT+TGG | + | chr8.4:72325545-72325564 | None:intergenic | 60.0% |
| TGGCCGGAGACTCACCGGTA+AGG | - | chr8.4:72323822-72323841 | MS.gene25093:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 72323793 | 72326065 | 72323793 | ID=MS.gene25093 |
| chr8.4 | mRNA | 72323793 | 72326065 | 72323793 | ID=MS.gene25093.t1;Parent=MS.gene25093 |
| chr8.4 | exon | 72325900 | 72326065 | 72325900 | ID=MS.gene25093.t1.exon1;Parent=MS.gene25093.t1 |
| chr8.4 | CDS | 72325900 | 72326065 | 72325900 | ID=cds.MS.gene25093.t1;Parent=MS.gene25093.t1 |
| chr8.4 | exon | 72325482 | 72325605 | 72325482 | ID=MS.gene25093.t1.exon2;Parent=MS.gene25093.t1 |
| chr8.4 | CDS | 72325482 | 72325605 | 72325482 | ID=cds.MS.gene25093.t1;Parent=MS.gene25093.t1 |
| chr8.4 | exon | 72324193 | 72324443 | 72324193 | ID=MS.gene25093.t1.exon3;Parent=MS.gene25093.t1 |
| chr8.4 | CDS | 72324193 | 72324443 | 72324193 | ID=cds.MS.gene25093.t1;Parent=MS.gene25093.t1 |
| chr8.4 | exon | 72324010 | 72324067 | 72324010 | ID=MS.gene25093.t1.exon4;Parent=MS.gene25093.t1 |
| chr8.4 | CDS | 72324010 | 72324067 | 72324010 | ID=cds.MS.gene25093.t1;Parent=MS.gene25093.t1 |
| chr8.4 | exon | 72323793 | 72323901 | 72323793 | ID=MS.gene25093.t1.exon5;Parent=MS.gene25093.t1 |
| chr8.4 | CDS | 72323793 | 72323901 | 72323793 | ID=cds.MS.gene25093.t1;Parent=MS.gene25093.t1 |
| Gene Sequence |
| Protein sequence |
