Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051134.t1 | XP_003627669.2 | 96.1 | 467 | 16 | 2 | 13 | 478 | 47 | 512 | 1.70E-256 | 894.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051134.t1 | Q50EK3 | 51.9 | 489 | 213 | 9 | 8 | 477 | 29 | 514 | 6.7e-140 | 498.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051134.t1 | G7LDJ8 | 96.1 | 467 | 16 | 2 | 13 | 478 | 47 | 512 | 1.2e-256 | 894.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051132 | MS.gene051134 | 0.962936 | 1.79E-121 | -1.69E-46 |
| MS.gene051134 | MS.gene051136 | 0.933948 | 8.60E-96 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 0 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAAATAAAATAATATCA+AGG | - | 56441:10588-10607 | MS.gene051134:intron | 10.0% |
| !! | AGAAAATATAATTATTAAAG+AGG | - | 56441:7890-7909 | MS.gene051134:intron | 10.0% |
| !! | TATATATGTTCTTTATTAAA+TGG | - | 56441:7212-7231 | MS.gene051134:intron | 10.0% |
| !!! | AATTTGAATAACATAATTTT+CGG | + | 56441:10632-10651 | None:intergenic | 10.0% |
| !!! | TAAAAATAACTGATTTATTT+TGG | - | 56441:7981-8000 | MS.gene051134:intron | 10.0% |
| !! | TTATTATGAAGATAAACATT+TGG | - | 56441:8032-8051 | MS.gene051134:intron | 15.0% |
| !!! | TTCATTGATTTTTACTTTTA+TGG | - | 56441:7245-7264 | MS.gene051134:intron | 15.0% |
| !! | AAAGAATATATTTACTCACT+TGG | + | 56441:8476-8495 | None:intergenic | 20.0% |
| !! | AAAGATCCTAAATAGATTAT+TGG | + | 56441:8823-8842 | None:intergenic | 20.0% |
| !! | AAATCAATGAGAGATATATA+AGG | - | 56441:10564-10583 | MS.gene051134:intron | 20.0% |
| !! | ATAAAGAAGTTTCTCAATAT+TGG | - | 56441:8998-9017 | MS.gene051134:CDS | 20.0% |
| !! | ATGAAATACTTTCTAATTTC+CGG | - | 56441:10050-10069 | MS.gene051134:intron | 20.0% |
| !! | ATGATAAATCTTCATATTGA+TGG | - | 56441:10865-10884 | MS.gene051134:CDS | 20.0% |
| !! | TACAATCAATAGATATGAAA+AGG | - | 56441:8168-8187 | MS.gene051134:CDS | 20.0% |
| !! | TGCTTAAATTGAATATTGAT+TGG | - | 56441:10709-10728 | MS.gene051134:CDS | 20.0% |
| !! | TTAAAATTTCTATGTATGCA+GGG | - | 56441:8240-8259 | MS.gene051134:intron | 20.0% |
| !!! | AAAACCAATTTTGAAAACTA+TGG | - | 56441:7182-7201 | MS.gene051134:intron | 20.0% |
| !!! | AAAATTTGTTGATTATTGCT+TGG | + | 56441:10094-10113 | None:intergenic | 20.0% |
| !!! | GATTTCAACGTTTATTTTAA+TGG | + | 56441:10296-10315 | None:intergenic | 20.0% |
| !!! | TGTGTCTAATACTAAATTTT+TGG | - | 56441:7941-7960 | MS.gene051134:intron | 20.0% |
| !!! | TTTTTCTACTGTTTTTCTTT+TGG | - | 56441:8101-8120 | MS.gene051134:CDS | 20.0% |
| !!! | TTTTTTCACTTTAAATCCAA+CGG | + | 56441:7466-7485 | None:intergenic | 20.0% |
| ! | AATATCAAGGAGAATATCTT+CGG | - | 56441:10601-10620 | MS.gene051134:intron | 25.0% |
| ! | AGTATATACTCAACATTACT+TGG | + | 56441:7161-7180 | None:intergenic | 25.0% |
| ! | AGTTATTATTGATGTTGTTG+TGG | - | 56441:10494-10513 | MS.gene051134:intron | 25.0% |
| ! | ATAAATCTTCATATTGATGG+AGG | - | 56441:10868-10887 | MS.gene051134:CDS | 25.0% |
| ! | CAAAATTTGAAGGATTTACT+AGG | - | 56441:8276-8295 | MS.gene051134:intron | 25.0% |
| ! | CTTAAAATTTCTATGTATGC+AGG | - | 56441:8239-8258 | MS.gene051134:intron | 25.0% |
| ! | CTTCATAATAACTCAGTATA+AGG | + | 56441:8023-8042 | None:intergenic | 25.0% |
| ! | CTTGATCCAATAATCTATTT+AGG | - | 56441:8814-8833 | MS.gene051134:CDS | 25.0% |
| ! | GATGGATATAGTGTAAAAAA+AGG | - | 56441:9691-9710 | MS.gene051134:intron | 25.0% |
| ! | GTTATTATTGATGTTGTTGT+GGG | - | 56441:10495-10514 | MS.gene051134:intron | 25.0% |
| !! | CTAGTAAATCCTTCAAATTT+TGG | + | 56441:8278-8297 | None:intergenic | 25.0% |
| !! | CTTTCCATAGTTTTCAAAAT+TGG | + | 56441:7189-7208 | None:intergenic | 25.0% |
| !! | TATAAACTTCACTTCTGAAA+GGG | + | 56441:7130-7149 | None:intergenic | 25.0% |
| !! | TCTTTTAATGAAATCAACCT+TGG | - | 56441:8838-8857 | MS.gene051134:CDS | 25.0% |
| !! | TTTTCTGTTGTTCAAAATGA+TGG | - | 56441:7915-7934 | MS.gene051134:intron | 25.0% |
| !!! | ATATTCTCAGCAGTTTTATT+AGG | - | 56441:10790-10809 | MS.gene051134:CDS | 25.0% |
| !!! | CAAGTATTTGACTTTAAAGT+AGG | - | 56441:7769-7788 | MS.gene051134:intron | 25.0% |
| !!! | CAATTTTGAAAACTATGGAA+AGG | - | 56441:7187-7206 | MS.gene051134:intron | 25.0% |
| !!! | TATTGATTCCCAACAAATAT+GGG | + | 56441:8602-8621 | None:intergenic | 25.0% |
| !!! | TTTTGGAAAATAGTTGTGAT+TGG | - | 56441:7958-7977 | MS.gene051134:intron | 25.0% |
| !!! | TTTTTTACACTATATCCATC+TGG | + | 56441:9691-9710 | None:intergenic | 25.0% |
| !!! | TTTTTTACTGCAGTGAATTT+GGG | - | 56441:7725-7744 | MS.gene051134:intron | 25.0% |
| !!! | TTTTTTTACTGCAGTGAATT+TGG | - | 56441:7724-7743 | MS.gene051134:intron | 25.0% |
| AAAAAGGTTTCATTCGTAGA+AGG | - | 56441:8197-8216 | MS.gene051134:CDS | 30.0% | |
| AACCATTCGTCTAATTTGAA+AGG | + | 56441:10198-10217 | None:intergenic | 30.0% | |
| AACTTGGAAAATTGAATCCA+AGG | + | 56441:8858-8877 | None:intergenic | 30.0% | |
| AAGAAGGAGACTATACTTAT+AGG | + | 56441:10130-10149 | None:intergenic | 30.0% | |
| AATTTACATGCAGAAAACAG+TGG | - | 56441:10535-10554 | MS.gene051134:intron | 30.0% | |
| ATCGTTATGTTGATATCTTC+TGG | - | 56441:8972-8991 | MS.gene051134:CDS | 30.0% | |
| ATGGAAGAAATTATGCCAAA+TGG | + | 56441:10226-10245 | None:intergenic | 30.0% | |
| ATTATATGACTGATCTTGCA+AGG | - | 56441:7078-7097 | MS.gene051134:CDS | 30.0% | |
| ATTTACATGCAGAAAACAGT+GGG | - | 56441:10536-10555 | MS.gene051134:intron | 30.0% | |
| CAGAAATTCCCATATTTGTT+GGG | - | 56441:8591-8610 | MS.gene051134:CDS | 30.0% | |
| CATCATCTCATTACAATAAG+CGG | - | 56441:9899-9918 | MS.gene051134:intron | 30.0% | |
| CTCTCAAAGTCAATGTTTAT+CGG | + | 56441:10253-10272 | None:intergenic | 30.0% | |
| GTACAACTACCAAAATTTGA+AGG | - | 56441:8266-8285 | MS.gene051134:intron | 30.0% | |
| GTATAAACTTCACTTCTGAA+AGG | + | 56441:7131-7150 | None:intergenic | 30.0% | |
| TACATATTACACACATGTCT+TGG | + | 56441:10667-10686 | None:intergenic | 30.0% | |
| TACTCTCATGCTTGTATAAT+AGG | - | 56441:9577-9596 | MS.gene051134:CDS | 30.0% | |
| TAGTGTAAAAAAAGGAGACA+TGG | - | 56441:9699-9718 | MS.gene051134:intron | 30.0% | |
| TCAAATTAGACGAATGGTTT+AGG | - | 56441:10199-10218 | MS.gene051134:intron | 30.0% | |
| TCCTCAGAAAAGAATTACAT+CGG | - | 56441:8726-8745 | MS.gene051134:intron | 30.0% | |
| TGATTCTATAGATAAGAGTC+TGG | - | 56441:7307-7326 | MS.gene051134:intron | 30.0% | |
| TGGAAGAAATTATGCCAAAT+GGG | + | 56441:10225-10244 | None:intergenic | 30.0% | |
| TTGAATCCAATCTATTGTAG+AGG | + | 56441:7752-7771 | None:intergenic | 30.0% | |
| TTGTTGGGAATCAATACTAA+GGG | - | 56441:8606-8625 | MS.gene051134:CDS | 30.0% | |
| TTTGTTGGGAATCAATACTA+AGG | - | 56441:8605-8624 | MS.gene051134:CDS | 30.0% | |
| ! | ATTGACTTTGAGAGAATTTG+AGG | - | 56441:10259-10278 | MS.gene051134:intron | 30.0% |
| ! | ATTGCCTTCTTTTATCTGAT+TGG | - | 56441:8772-8791 | MS.gene051134:intron | 30.0% |
| ! | CATCAAGATTCTTTTTATGC+AGG | - | 56441:9633-9652 | MS.gene051134:intron | 30.0% |
| ! | CTGTTCAAATTTTGTACACA+TGG | + | 56441:7872-7891 | None:intergenic | 30.0% |
| ! | TATGAAAAGGTACACCAAAA+AGG | - | 56441:8181-8200 | MS.gene051134:CDS | 30.0% |
| ! | TCAATTTTCCAAGTTGCATT+CGG | - | 56441:8863-8882 | MS.gene051134:CDS | 30.0% |
| ! | TGAAATCAAAGCATTACACA+GGG | - | 56441:10894-10913 | MS.gene051134:CDS | 30.0% |
| ! | TTCTACGAATGAAACCTTTT+TGG | + | 56441:8198-8217 | None:intergenic | 30.0% |
| ! | TTGAAATCAAAGCATTACAC+AGG | - | 56441:10893-10912 | MS.gene051134:CDS | 30.0% |
| ! | TTGAATATTGATTGGAATGC+AGG | - | 56441:10717-10736 | MS.gene051134:CDS | 30.0% |
| ! | TTGTTGATTATTGCTTGGTT+AGG | + | 56441:10089-10108 | None:intergenic | 30.0% |
| !! | ATTCTGAACTTTGTTATTGC+TGG | - | 56441:9303-9322 | MS.gene051134:intron | 30.0% |
| !! | GTATTGATTCCCAACAAATA+TGG | + | 56441:8603-8622 | None:intergenic | 30.0% |
| !! | TTCTGAACTTTGTTATTGCT+GGG | - | 56441:9304-9323 | MS.gene051134:intron | 30.0% |
| !!! | GTTTATTTTAATGGCCAAGA+GGG | + | 56441:10287-10306 | None:intergenic | 30.0% |
| AAACATTTAAGCTGCTAGCA+AGG | + | 56441:8059-8078 | None:intergenic | 35.0% | |
| AAACTCTAAACACGAACCAT+CGG | + | 56441:7615-7634 | None:intergenic | 35.0% | |
| AAAGAATTACATCGGACTTG+AGG | - | 56441:8734-8753 | MS.gene051134:intron | 35.0% | |
| AACTCCACTATGATTGAAGA+CGG | + | 56441:10478-10497 | None:intergenic | 35.0% | |
| AAGTCAATTATTTGGACCCT+AGG | + | 56441:7402-7421 | None:intergenic | 35.0% | |
| AATTCTCCACGAAGATGTTA+CGG | - | 56441:8361-8380 | MS.gene051134:CDS | 35.0% | |
| ACATGGAAAAAACCAGAAGA+AGG | + | 56441:10146-10165 | None:intergenic | 35.0% | |
| AGAGTGGAGATATTCTATCA+AGG | - | 56441:9235-9254 | MS.gene051134:intron | 35.0% | |
| AGCTAAGGACAATACTTTGA+GGG | - | 56441:8674-8693 | MS.gene051134:intron | 35.0% | |
| AGGAATTTAGACCTGAAAGA+TGG | - | 56441:9779-9798 | MS.gene051134:intron | 35.0% | |
| AGGATAAAAGGTCTGTTTGT+CGG | + | 56441:8536-8555 | None:intergenic | 35.0% | |
| AGTCAAAAGTTAGACATCGT+TGG | + | 56441:7689-7708 | None:intergenic | 35.0% | |
| ATACATGAACCAAGAAAGTG+TGG | + | 56441:9346-9365 | None:intergenic | 35.0% | |
| ATTCGTAGAAGGATGAAGTA+TGG | - | 56441:8208-8227 | MS.gene051134:CDS | 35.0% | |
| ATTTAAGCACGCTCTAACAA+AGG | + | 56441:10698-10717 | None:intergenic | 35.0% | |
| CAACAGTACAGATTTCTTGA+TGG | + | 56441:7580-7599 | None:intergenic | 35.0% | |
| CACATCCCTATAACTTTGTT+TGG | - | 56441:9923-9942 | MS.gene051134:intron | 35.0% | |
| CAGAAAATATGAGAGGAGTT+TGG | - | 56441:9969-9988 | MS.gene051134:intron | 35.0% | |
| CATCAAGAAATCTGTACTGT+TGG | - | 56441:7578-7597 | MS.gene051134:intron | 35.0% | |
| CCAACAAATATGGGAATTTC+TGG | + | 56441:8593-8612 | None:intergenic | 35.0% | |
| CCAGAAATTCCCATATTTGT+TGG | - | 56441:8590-8609 | MS.gene051134:CDS | 35.0% | |
| CTAGCAGCTTAAATGTTTCA+AGG | - | 56441:8061-8080 | MS.gene051134:CDS | 35.0% | |
| CTAGCCAATCAGATAAAAGA+AGG | + | 56441:8779-8798 | None:intergenic | 35.0% | |
| CTTTAGGCAGAAAATATGAG+AGG | - | 56441:9962-9981 | MS.gene051134:intron | 35.0% | |
| GAAAAGCCGTAAACTTGAAA+GGG | + | 56441:9837-9856 | None:intergenic | 35.0% | |
| GAAAGATGGCTTGATGAAAA+TGG | - | 56441:9793-9812 | MS.gene051134:intron | 35.0% | |
| GAGACTATACTTATAGGCAA+TGG | + | 56441:10124-10143 | None:intergenic | 35.0% | |
| GAGGATCCAAGTCAATTATT+TGG | + | 56441:7410-7429 | None:intergenic | 35.0% | |
| GCATGCCAAACAAAGTTATA+GGG | + | 56441:9931-9950 | None:intergenic | 35.0% | |
| GTTAGGTAAATGTATGGAAC+CGG | + | 56441:10072-10091 | None:intergenic | 35.0% | |
| GTTGGATTTAAAAGATCCGA+TGG | - | 56441:7596-7615 | MS.gene051134:intron | 35.0% | |
| GTTTCTCAATATTGGATCAG+AGG | - | 56441:9006-9025 | MS.gene051134:CDS | 35.0% | |
| TAAGTATAGTCTCCTTCTTC+TGG | - | 56441:10131-10150 | MS.gene051134:intron | 35.0% | |
| TAGCTAAGGACAATACTTTG+AGG | - | 56441:8673-8692 | MS.gene051134:intron | 35.0% | |
| TAGGGTCCAAATAATTGACT+TGG | - | 56441:7401-7420 | MS.gene051134:intron | 35.0% | |
| TATAAGCAAACTCCTTTCCT+AGG | + | 56441:10759-10778 | None:intergenic | 35.0% | |
| TCATACCAACCTTATGCAAT+GGG | - | 56441:9724-9743 | MS.gene051134:intron | 35.0% | |
| TCGTCTAATTTGAAAGGCAA+GGG | + | 56441:10192-10211 | None:intergenic | 35.0% | |
| TGAAAAGCCGTAAACTTGAA+AGG | + | 56441:9838-9857 | None:intergenic | 35.0% | |
| TGAACAATGTAGAGAAAGAG+TGG | - | 56441:9219-9238 | MS.gene051134:intron | 35.0% | |
| TGCCTTTCAAATTAGACGAA+TGG | - | 56441:10193-10212 | MS.gene051134:intron | 35.0% | |
| TGCTTGGTTAGGTAAATGTA+TGG | + | 56441:10078-10097 | None:intergenic | 35.0% | |
| TTCGTCTAATTTGAAAGGCA+AGG | + | 56441:10193-10212 | None:intergenic | 35.0% | |
| TTGAAGGATTTACTAGGAGA+TGG | - | 56441:8282-8301 | MS.gene051134:intron | 35.0% | |
| ! | ACTTGCAGTATCAAAAGCAT+TGG | + | 56441:8939-8958 | None:intergenic | 35.0% |
| ! | CAAGGAAGTACAAAACATAC+AGG | - | 56441:7096-7115 | MS.gene051134:CDS | 35.0% |
| ! | TCCGATGTAATTCTTTTCTG+AGG | + | 56441:8730-8749 | None:intergenic | 35.0% |
| ! | TTTTCATCAAGCCATCTTTC+AGG | + | 56441:9793-9812 | None:intergenic | 35.0% |
| !! | AGAAAGCCCTTTCAAGTTTA+CGG | - | 56441:9828-9847 | MS.gene051134:intron | 35.0% |
| !! | ATGGCGGTAACTTTGATTTT+CGG | + | 56441:7561-7580 | None:intergenic | 35.0% |
| !!! | CGTTTATTTTAATGGCCAAG+AGG | + | 56441:10288-10307 | None:intergenic | 35.0% |
| !!! | TTTCAAGTTTACGGCTTTTC+AGG | - | 56441:9837-9856 | MS.gene051134:intron | 35.0% |
| ACTGAACTTAACAGCATGTG+TGG | - | 56441:8887-8906 | MS.gene051134:CDS | 40.0% | |
| ATAAACGTTGAAATCGCTGC+TGG | - | 56441:10301-10320 | MS.gene051134:intron | 40.0% | |
| ATCAAGGTTTCTGCAAGTGA+AGG | - | 56441:9251-9270 | MS.gene051134:intron | 40.0% | |
| ATTCTCCACGAAGATGTTAC+GGG | - | 56441:8362-8381 | MS.gene051134:CDS | 40.0% | |
| ATTGCCATCAAAGAAGCCTA+TGG | - | 56441:10337-10356 | MS.gene051134:intron | 40.0% | |
| CAGTACAGATTTCTTGATGG+CGG | + | 56441:7577-7596 | None:intergenic | 40.0% | |
| CATACCAACCTTATGCAATG+GGG | - | 56441:9725-9744 | MS.gene051134:intron | 40.0% | |
| CATGTTCTTACCATCTGCAT+AGG | + | 56441:10033-10052 | None:intergenic | 40.0% | |
| CTCAGTGGATAGAAGAGTTT+GGG | + | 56441:8647-8666 | None:intergenic | 40.0% | |
| CTGTCAATTGTCTCAATGGT+GGG | - | 56441:7365-7384 | MS.gene051134:intron | 40.0% | |
| GCTTACACTCATAACCAAAG+CGG | - | 56441:8698-8717 | MS.gene051134:intron | 40.0% | |
| GGCATGCCAAACAAAGTTAT+AGG | + | 56441:9932-9951 | None:intergenic | 40.0% | |
| GGGAGGATGAAATTCATATG+GGG | - | 56441:9745-9764 | MS.gene051134:intron | 40.0% | |
| GGGGAGGATGAAATTCATAT+GGG | - | 56441:9744-9763 | MS.gene051134:intron | 40.0% | |
| GTAAACTTGAAAGGGCTTTC+TGG | + | 56441:9829-9848 | None:intergenic | 40.0% | |
| GTCATACCAACCTTATGCAA+TGG | - | 56441:9723-9742 | MS.gene051134:intron | 40.0% | |
| GTCGAAGCTAAGAGGATAAA+AGG | + | 56441:8548-8567 | None:intergenic | 40.0% | |
| TATTGCTGGGAAAGACACAA+CGG | - | 56441:9317-9336 | MS.gene051134:intron | 40.0% | |
| TCCAAGACTGCAACATTATG+CGG | - | 56441:7513-7532 | MS.gene051134:intron | 40.0% | |
| TGAAAGGCAAGGGAAAGTTT+GGG | + | 56441:10182-10201 | None:intergenic | 40.0% | |
| TGAGCTGTCAATTGTCTCAA+TGG | - | 56441:7361-7380 | MS.gene051134:intron | 40.0% | |
| TGGGGAGGATGAAATTCATA+TGG | - | 56441:9743-9762 | MS.gene051134:intron | 40.0% | |
| TGTCAATTGTCTCAATGGTG+GGG | - | 56441:7366-7385 | MS.gene051134:intron | 40.0% | |
| TTATCTCCATGCAACACTCA+CGG | - | 56441:9497-9516 | MS.gene051134:CDS | 40.0% | |
| TTGAAAGGCAAGGGAAAGTT+TGG | + | 56441:10183-10202 | None:intergenic | 40.0% | |
| TTGGATCAGAGGCAACATTA+AGG | - | 56441:9017-9036 | MS.gene051134:CDS | 40.0% | |
| TTGGGTCCTCTACAATAGAT+TGG | - | 56441:7743-7762 | MS.gene051134:intron | 40.0% | |
| ! | AAAGTTTGGGTTTCTGACTG+GGG | + | 56441:10169-10188 | None:intergenic | 40.0% |
| ! | ATATTGATTGGAATGCAGGC+AGG | - | 56441:10721-10740 | MS.gene051134:CDS | 40.0% |
| ! | ATTGTTATGCTGACTGCTGA+GGG | - | 56441:7830-7849 | MS.gene051134:intron | 40.0% |
| ! | GAAAGTTTGGGTTTCTGACT+GGG | + | 56441:10170-10189 | None:intergenic | 40.0% |
| ! | GTCAATGTTTATCGGCTGAA+TGG | + | 56441:10245-10264 | None:intergenic | 40.0% |
| ! | TATTGTTATGCTGACTGCTG+AGG | - | 56441:7829-7848 | MS.gene051134:intron | 40.0% |
| ! | TTCAAAAGTAGCCTTACCAC+AGG | + | 56441:9549-9568 | None:intergenic | 40.0% |
| ! | TTCTTTGATGGCAATGTTGG+TGG | + | 56441:10332-10351 | None:intergenic | 40.0% |
| !! | AAGAAGTATCATCCTGTTGC+TGG | - | 56441:7014-7033 | MS.gene051134:CDS | 40.0% |
| !! | GAAGCTTTTTCTTGTACTGC+AGG | + | 56441:9384-9403 | None:intergenic | 40.0% |
| !! | TGGCGGTAACTTTGATTTTC+GGG | + | 56441:7560-7579 | None:intergenic | 40.0% |
| AATTACATCGGACTTGAGGC+TGG | - | 56441:8738-8757 | MS.gene051134:intron | 45.0% | |
| ACAGGAAGTGGAATTGGTGA+TGG | + | 56441:10374-10393 | None:intergenic | 45.0% | |
| ACGAATGGTTTAGGCCCATT+TGG | - | 56441:10208-10227 | MS.gene051134:intron | 45.0% | |
| ACTTTATCCTGCAGTTCCTG+TGG | - | 56441:9530-9549 | MS.gene051134:CDS | 45.0% | |
| ATCCTCTTAGCTTCGACTGA+CGG | - | 56441:8551-8570 | MS.gene051134:CDS | 45.0% | |
| ATGTGTGGATCAAGTGAGGA+AGG | - | 56441:8902-8921 | MS.gene051134:CDS | 45.0% | |
| ATTGAAGACGGTGCAAGCAT+GGG | + | 56441:10466-10485 | None:intergenic | 45.0% | |
| CATGCCACAACTGTGACTTT+AGG | - | 56441:9946-9965 | MS.gene051134:intron | 45.0% | |
| CCAAACTCTTCTATCCACTG+AGG | - | 56441:8645-8664 | MS.gene051134:CDS | 45.0% | |
| CCTCAGTGGATAGAAGAGTT+TGG | + | 56441:8648-8667 | None:intergenic | 45.0% | |
| CCTTAGCTAAAATGCCTCAG+TGG | + | 56441:8662-8681 | None:intergenic | 45.0% | |
| GAAGGAACAGGAAGTGGAAT+TGG | + | 56441:10380-10399 | None:intergenic | 45.0% | |
| GATCCTCTACAGCTGCATTA+CGG | - | 56441:7423-7442 | MS.gene051134:intron | 45.0% | |
| GCTGATGACACATTACCAGA+TGG | - | 56441:9673-9692 | MS.gene051134:intron | 45.0% | |
| GCTGTCAATTGTCTCAATGG+TGG | - | 56441:7364-7383 | MS.gene051134:intron | 45.0% | |
| GTCAATTGTCTCAATGGTGG+GGG | - | 56441:7367-7386 | MS.gene051134:intron | 45.0% | |
| GTTCAGTTCCGAATGCAACT+TGG | + | 56441:8874-8893 | None:intergenic | 45.0% | |
| TACCATCTGCATAGGAAGTC+TGG | + | 56441:10025-10044 | None:intergenic | 45.0% | |
| TCTGCCTAAAGTCACAGTTG+TGG | + | 56441:9953-9972 | None:intergenic | 45.0% | |
| TGCACCGTCTTCAATCATAG+TGG | - | 56441:10471-10490 | MS.gene051134:intron | 45.0% | |
| TGTTGCAGTCTTGGACATGT+AGG | + | 56441:7508-7527 | None:intergenic | 45.0% | |
| TTCATCCTCCCCATTGCATA+AGG | + | 56441:9736-9755 | None:intergenic | 45.0% | |
| TTCCAGACTTCCTATGCAGA+TGG | - | 56441:10020-10039 | MS.gene051134:intron | 45.0% | |
| TTGAATACAGTGCCAGCAAC+AGG | + | 56441:7029-7048 | None:intergenic | 45.0% | |
| ! | CATGAACCAAGAAAGTGTGG+CGG | + | 56441:9343-9362 | None:intergenic | 45.0% |
| ! | GAGAATTTGAGGTTCCCTCT+TGG | - | 56441:10270-10289 | MS.gene051134:intron | 45.0% |
| ! | GATGGAATTTTCGCCGTTGA+TGG | - | 56441:8300-8319 | MS.gene051134:intron | 45.0% |
| ! | GGAAAGTTTGGGTTTCTGAC+TGG | + | 56441:10171-10190 | None:intergenic | 45.0% |
| ! | GGCTTCTTTGATGGCAATGT+TGG | + | 56441:10335-10354 | None:intergenic | 45.0% |
| ! | TTCTGAGGAATTGTCCGCTT+TGG | + | 56441:8715-8734 | None:intergenic | 45.0% |
| !! | ATTACGGTGCTGCAGCTTTA+GGG | - | 56441:7439-7458 | MS.gene051134:intron | 45.0% |
| !!! | CCACTGAGGCATTTTAGCTA+AGG | - | 56441:8659-8678 | MS.gene051134:intron | 45.0% |
| AACCGTCAGTCGAAGCTAAG+AGG | + | 56441:8556-8575 | None:intergenic | 50.0% | |
| ACATTATGCGGCAGCTGTAG+AGG | - | 56441:7525-7544 | MS.gene051134:intron | 50.0% | |
| ACCAACCTTATGCAATGGGG+AGG | - | 56441:9728-9747 | MS.gene051134:intron | 50.0% | |
| ACGCCATTTCTCGCCATCAA+CGG | + | 56441:8316-8335 | None:intergenic | 50.0% | |
| AGGTCTGTTTGTCGGTGCAT+CGG | + | 56441:8528-8547 | None:intergenic | 50.0% | |
| ATCCTGCAGTTCCTGTGGTA+AGG | - | 56441:9535-9554 | MS.gene051134:CDS | 50.0% | |
| CAGCATGTGTGGATCAAGTG+AGG | - | 56441:8898-8917 | MS.gene051134:CDS | 50.0% | |
| CAGTCTTGGACATGTAGGCA+CGG | + | 56441:7503-7522 | None:intergenic | 50.0% | |
| CATTATGCGGCAGCTGTAGA+GGG | - | 56441:7526-7545 | MS.gene051134:intron | 50.0% | |
| GAAGTCCCGTAACATCTTCG+TGG | + | 56441:8370-8389 | None:intergenic | 50.0% | |
| GATTGAAGACGGTGCAAGCA+TGG | + | 56441:10467-10486 | None:intergenic | 50.0% | |
| GCCGCATAATGTTGCAGTCT+TGG | + | 56441:7517-7536 | None:intergenic | 50.0% | |
| GCGAGAAATGGCGTGAACAA+AGG | - | 56441:8322-8341 | MS.gene051134:intron | 50.0% | |
| GTTGTGGGATGAGCTAGTGA+GGG | - | 56441:10510-10529 | MS.gene051134:intron | 50.0% | |
| TCCTCCCCATTGCATAAGGT+TGG | + | 56441:9732-9751 | None:intergenic | 50.0% | |
| TCCTCGGATATGCCTAGGAA+AGG | - | 56441:10744-10763 | MS.gene051134:CDS | 50.0% | |
| TCCTTTCCTAGGCATATCCG+AGG | + | 56441:10748-10767 | None:intergenic | 50.0% | |
| TGTTGTGGGATGAGCTAGTG+AGG | - | 56441:10509-10528 | MS.gene051134:intron | 50.0% | |
| ! | ATGCTGACTGCTGAGGGATA+TGG | - | 56441:7836-7855 | MS.gene051134:intron | 50.0% |
| ! | ATTGTCTCAATGGTGGGGGT+TGG | - | 56441:7371-7390 | MS.gene051134:intron | 50.0% |
| ! | CATATGGGGTGATGATGCAG+AGG | - | 56441:9759-9778 | MS.gene051134:intron | 50.0% |
| ! | TTGTCTCAATGGTGGGGGTT+GGG | - | 56441:7372-7391 | MS.gene051134:intron | 50.0% |
| !! | CATTACGGTGCTGCAGCTTT+AGG | - | 56441:7438-7457 | MS.gene051134:intron | 50.0% |
| AAAGAAGCCTATGGCGCCAC+TGG | - | 56441:10346-10365 | MS.gene051134:intron | 55.0% | |
| AGCCTTACCACAGGAACTGC+AGG | + | 56441:9540-9559 | None:intergenic | 55.0% | |
| AGGTTGTGCCAAAACTGGGC+AGG | + | 56441:10440-10459 | None:intergenic | 55.0% | |
| GCACCGTAATGCAGCTGTAG+AGG | + | 56441:7429-7448 | None:intergenic | 55.0% | |
| GCGCAGGTTGTGCCAAAACT+GGG | + | 56441:10444-10463 | None:intergenic | 55.0% | |
| GGCGCCATAGGCTTCTTTGA+TGG | + | 56441:10344-10363 | None:intergenic | 55.0% | |
| GTGGGGGTTGGGATTTCCTA+GGG | - | 56441:7383-7402 | MS.gene051134:intron | 55.0% | |
| GTTGGTGCATGTGGATGAGC+TGG | + | 56441:10404-10423 | None:intergenic | 55.0% | |
| TGCCAAAACTGGGCAGGAAG+AGG | + | 56441:10434-10453 | None:intergenic | 55.0% | |
| TGGGTTTCTGACTGGGGACA+TGG | + | 56441:10163-10182 | None:intergenic | 55.0% | |
| TTGGAATGCAGGCAGGTCCT+CGG | - | 56441:10728-10747 | MS.gene051134:CDS | 55.0% | |
| TTGTCGGTGCATCGGACTTG+AGG | + | 56441:8520-8539 | None:intergenic | 55.0% | |
| ! | GAGTCTCCGTGAGTGTTGCA+TGG | + | 56441:9506-9525 | None:intergenic | 55.0% |
| ! | TGCCTCTTCCTGCCCAGTTT+TGG | - | 56441:10429-10448 | MS.gene051134:intron | 55.0% |
| !! | GGAATTGGTGATGGTGCCAG+TGG | + | 56441:10365-10384 | None:intergenic | 55.0% |
| !! | TCGCCGTTGATGGCGAGAAA+TGG | - | 56441:8310-8329 | MS.gene051134:intron | 55.0% |
| AACTGGGCAGGAAGAGGCAG+AGG | + | 56441:10428-10447 | None:intergenic | 60.0% | |
| CAACGGCCGCCACACTTTCT+TGG | - | 56441:9334-9353 | MS.gene051134:intron | 60.0% | |
| CGGTGCATCGGACTTGAGGT+AGG | + | 56441:8516-8535 | None:intergenic | 60.0% | |
| GCAGGTCCTCGGATATGCCT+AGG | - | 56441:10739-10758 | MS.gene051134:CDS | 60.0% | |
| GCATGTGGATGAGCTGGCGA+AGG | + | 56441:10398-10417 | None:intergenic | 60.0% | |
| GCTGGCGAAGGAACAGGAAG+TGG | + | 56441:10386-10405 | None:intergenic | 60.0% | |
| GGATGAGCTGGCGAAGGAAC+AGG | + | 56441:10392-10411 | None:intergenic | 60.0% | |
| GGCGCAGGTTGTGCCAAAAC+TGG | + | 56441:10445-10464 | None:intergenic | 60.0% | |
| GGTGGGGGTTGGGATTTCCT+AGG | - | 56441:7382-7401 | MS.gene051134:intron | 60.0% | |
| ! | GCAGGAAGAGGCAGAGGTGT+TGG | + | 56441:10422-10441 | None:intergenic | 60.0% |
| !! | GCTGCAGCTTTAGGGACCGT+TGG | - | 56441:7447-7466 | MS.gene051134:intron | 60.0% |
| !! | GGCAGAGGTGTTGGTGCATG+TGG | + | 56441:10413-10432 | None:intergenic | 60.0% |
| ! | GATGGTGCCAGTGGCGCCAT+AGG | + | 56441:10356-10375 | None:intergenic | 65.0% |
| GACGGTGCAAGCATGGGCGC+AGG | + | 56441:10460-10479 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 56441 | gene | 6983 | 10921 | 6983 | ID=MS.gene051134 |
| 56441 | mRNA | 6983 | 10921 | 6983 | ID=MS.gene051134.t1;Parent=MS.gene051134 |
| 56441 | exon | 10696 | 10921 | 10696 | ID=MS.gene051134.t1.exon1;Parent=MS.gene051134.t1 |
| 56441 | CDS | 10696 | 10921 | 10696 | ID=cds.MS.gene051134.t1;Parent=MS.gene051134.t1 |
| 56441 | exon | 9428 | 9643 | 9428 | ID=MS.gene051134.t1.exon2;Parent=MS.gene051134.t1 |
| 56441 | CDS | 9428 | 9643 | 9428 | ID=cds.MS.gene051134.t1;Parent=MS.gene051134.t1 |
| 56441 | exon | 8779 | 9068 | 8779 | ID=MS.gene051134.t1.exon3;Parent=MS.gene051134.t1 |
| 56441 | CDS | 8779 | 9068 | 8779 | ID=cds.MS.gene051134.t1;Parent=MS.gene051134.t1 |
| 56441 | exon | 8353 | 8671 | 8353 | ID=MS.gene051134.t1.exon4;Parent=MS.gene051134.t1 |
| 56441 | CDS | 8353 | 8671 | 8353 | ID=cds.MS.gene051134.t1;Parent=MS.gene051134.t1 |
| 56441 | exon | 8046 | 8249 | 8046 | ID=MS.gene051134.t1.exon5;Parent=MS.gene051134.t1 |
| 56441 | CDS | 8046 | 8249 | 8046 | ID=cds.MS.gene051134.t1;Parent=MS.gene051134.t1 |
| 56441 | exon | 6983 | 7165 | 6983 | ID=MS.gene051134.t1.exon6;Parent=MS.gene051134.t1 |
| 56441 | CDS | 6983 | 7165 | 6983 | ID=cds.MS.gene051134.t1;Parent=MS.gene051134.t1 |
| Gene Sequence |
| Protein sequence |
