Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051132.t1 | XP_003627669.2 | 86.1 | 467 | 28 | 3 | 13 | 443 | 47 | 512 | 7.50E-222 | 779.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051132.t1 | Q50EK3 | 47.5 | 491 | 197 | 10 | 8 | 442 | 29 | 514 | 1.9e-117 | 424.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051132.t1 | G7LDJ8 | 86.1 | 467 | 28 | 3 | 13 | 443 | 47 | 512 | 5.4e-222 | 779.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051132 | MS.gene051134 | 0.962936 | 1.79E-121 | -1.69E-46 |
| MS.gene051132 | MS.gene051136 | 0.920794 | 8.15E-88 | -1.69E-46 |
| MS.gene051132 | MS.gene98636 | 0.80684 | 6.77E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 0 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAAATAAAATAATATCA+AGG | - | 56442:10649-10668 | MS.gene051132:intron | 10.0% |
| !! | AGAAAATATAATTATTAAAG+AGG | - | 56442:7954-7973 | MS.gene051132:intron | 10.0% |
| !! | TATATATGTTCTTTATTAAA+TGG | - | 56442:7278-7297 | MS.gene051132:intron | 10.0% |
| !!! | AATTTGAATAACATAATTTT+CGG | + | 56442:10693-10712 | MS.gene051132:intergenic | 10.0% |
| !!! | TAAAAATAACTGATTTATTT+TGG | - | 56442:8045-8064 | MS.gene051132:intron | 10.0% |
| !! | TTATTATGAAGATAAACATT+TGG | - | 56442:8095-8114 | MS.gene051132:intron | 15.0% |
| !!! | TTCATTGATTTTTACTTTTA+TGG | - | 56442:7311-7330 | MS.gene051132:intron | 15.0% |
| !! | AAAGAATATATTTACTCACT+TGG | + | 56442:8538-8557 | MS.gene051132:intergenic | 20.0% |
| !! | AAAGATCCTAAATAGATTAT+TGG | + | 56442:8884-8903 | MS.gene051132:intergenic | 20.0% |
| !! | AAATCAATGAGAGATATATA+AGG | - | 56442:10626-10645 | MS.gene051132:intron | 20.0% |
| !! | ATAAAGAAGTTTCTCAATAT+TGG | - | 56442:9059-9078 | MS.gene051132:CDS | 20.0% |
| !! | ATGAAATACTTTCTAATTTC+CGG | - | 56442:10110-10129 | MS.gene051132:intron | 20.0% |
| !! | ATGATAAATCTTCATATTGA+TGG | - | 56442:10926-10945 | MS.gene051132:CDS | 20.0% |
| !! | TACAATCAATAGATATGAAA+AGG | - | 56442:8231-8250 | MS.gene051132:intron | 20.0% |
| !! | TGCTTAAATTGAATATTGAT+TGG | - | 56442:10770-10789 | MS.gene051132:CDS | 20.0% |
| !! | TTAAAATTTCTATGTATGCA+GGG | - | 56442:8302-8321 | MS.gene051132:intron | 20.0% |
| !!! | AAAACCAATTTTGAAAACTA+TGG | - | 56442:7248-7267 | MS.gene051132:intron | 20.0% |
| !!! | TGTGTCTAATACTAAATTTT+TGG | - | 56442:8005-8024 | MS.gene051132:intron | 20.0% |
| !!! | TTTTTCTACTGTTTTTCTTT+TGG | - | 56442:8163-8182 | MS.gene051132:intron | 20.0% |
| !!! | TTTTTTCACTTTAAATCCAA+CGG | + | 56442:7531-7550 | MS.gene051132:intergenic | 20.0% |
| ! | AATATCAAGGAGAATATCTT+CGG | - | 56442:10662-10681 | MS.gene051132:intron | 25.0% |
| ! | AGTATATACTCAACATTACT+TGG | + | 56442:7227-7246 | MS.gene051132:intergenic | 25.0% |
| ! | AGTTATTATTGATGTTGTTG+TGG | - | 56442:10556-10575 | MS.gene051132:intron | 25.0% |
| ! | ATAAATCTTCATATTGATGG+AGG | - | 56442:10929-10948 | MS.gene051132:CDS | 25.0% |
| ! | CAAAATTTGAAGGATTTACT+AGG | - | 56442:8338-8357 | MS.gene051132:intron | 25.0% |
| ! | CTTAAAATTTCTATGTATGC+AGG | - | 56442:8301-8320 | MS.gene051132:intron | 25.0% |
| ! | CTTGATCCAATAATCTATTT+AGG | - | 56442:8875-8894 | MS.gene051132:CDS | 25.0% |
| ! | GATGGATATAGTGTAAAAAA+AGG | - | 56442:9754-9773 | MS.gene051132:intron | 25.0% |
| ! | GTTATTATTGATGTTGTTGT+GGG | - | 56442:10557-10576 | MS.gene051132:intron | 25.0% |
| !! | AAATTTGCTTGATTATTGCT+TGG | + | 56442:10154-10173 | MS.gene051132:intergenic | 25.0% |
| !! | ATATGAAAAGGTACACAAAA+AGG | - | 56442:8243-8262 | MS.gene051132:intron | 25.0% |
| !! | CTAGTAAATCCTTCAAATTT+TGG | + | 56442:8340-8359 | MS.gene051132:intergenic | 25.0% |
| !! | CTTTCCATAGTTTTCAAAAT+TGG | + | 56442:7255-7274 | MS.gene051132:intergenic | 25.0% |
| !! | TATAAACTTCACTTCTGAAA+GGG | + | 56442:7196-7215 | MS.gene051132:intergenic | 25.0% |
| !! | TCTTTTAATGAAATCAACCT+TGG | - | 56442:8899-8918 | MS.gene051132:CDS | 25.0% |
| !! | TTTTCTGTTGTTCAAAATGA+TGG | - | 56442:7979-7998 | MS.gene051132:intron | 25.0% |
| !!! | ATATTCTCAGCAGTTTTATT+AGG | - | 56442:10851-10870 | MS.gene051132:CDS | 25.0% |
| !!! | CAAGTATTTGACTTTAAAGT+AGG | - | 56442:7834-7853 | MS.gene051132:intron | 25.0% |
| !!! | CAATTTTGAAAACTATGGAA+AGG | - | 56442:7253-7272 | MS.gene051132:intron | 25.0% |
| !!! | CGATTCAACGTTTATTTTAA+TGG | + | 56442:10358-10377 | MS.gene051132:intergenic | 25.0% |
| !!! | TATTGATTCCCAACAAATAT+GGG | + | 56442:8663-8682 | MS.gene051132:intergenic | 25.0% |
| !!! | TTTTGGAAAATAGTTGTGAT+TGG | - | 56442:8022-8041 | MS.gene051132:intron | 25.0% |
| !!! | TTTTTTACACTATATCCATC+TGG | + | 56442:9754-9773 | MS.gene051132:intergenic | 25.0% |
| !!! | TTTTTTACTGCAGTGAATTT+GGG | - | 56442:7790-7809 | MS.gene051132:intron | 25.0% |
| !!! | TTTTTTTACTGCAGTGAATT+TGG | - | 56442:7789-7808 | MS.gene051132:intron | 25.0% |
| AAAAAGGTTTCATTCGTAGA+AGG | - | 56442:8259-8278 | MS.gene051132:CDS | 30.0% | |
| AACTTGGAAAATTGAATCCA+AGG | + | 56442:8919-8938 | MS.gene051132:intergenic | 30.0% | |
| AAGAAGGAGACTATACTTAT+AGG | + | 56442:10191-10210 | MS.gene051132:intergenic | 30.0% | |
| AATTTACATGCAGAAAACAG+TGG | - | 56442:10597-10616 | MS.gene051132:intron | 30.0% | |
| ATCGTTATGTTGATATCTTC+TGG | - | 56442:9033-9052 | MS.gene051132:CDS | 30.0% | |
| ATGGAAGAAATTATGCCAAA+TGG | + | 56442:10288-10307 | MS.gene051132:intergenic | 30.0% | |
| ATTATATGACTGATCTTGCA+AGG | - | 56442:7144-7163 | MS.gene051132:CDS | 30.0% | |
| ATTTACATGCAGAAAACAGT+GGG | - | 56442:10598-10617 | MS.gene051132:intron | 30.0% | |
| CAAAATTAGACGAATGGTTT+AGG | - | 56442:10261-10280 | MS.gene051132:intron | 30.0% | |
| CAGAAATTCCCATATTTGTT+GGG | - | 56442:8652-8671 | MS.gene051132:CDS | 30.0% | |
| CTCTCAAAGTCAATGTTTAT+CGG | + | 56442:10315-10334 | MS.gene051132:intergenic | 30.0% | |
| GTACAACTACCAAAATTTGA+AGG | - | 56442:8328-8347 | MS.gene051132:intron | 30.0% | |
| GTATAAACTTCACTTCTGAA+AGG | + | 56442:7197-7216 | MS.gene051132:intergenic | 30.0% | |
| TACATATTACACACATGTCT+TGG | + | 56442:10728-10747 | MS.gene051132:intergenic | 30.0% | |
| TACTCTCATGCTTGTATAAT+AGG | - | 56442:9640-9659 | MS.gene051132:CDS | 30.0% | |
| TAGTGTAAAAAAAGGAGACA+TGG | - | 56442:9762-9781 | MS.gene051132:intron | 30.0% | |
| TCCTCAGAAAAGAATTACAT+CGG | - | 56442:8787-8806 | MS.gene051132:intron | 30.0% | |
| TCTCATCTCATTACAATAAG+CGG | - | 56442:9960-9979 | MS.gene051132:intron | 30.0% | |
| TGAAAGATGCTTGATGAAAA+TGG | - | 56442:9854-9873 | MS.gene051132:intron | 30.0% | |
| TGATTCTATAGATAAGAGTC+TGG | - | 56442:7373-7392 | MS.gene051132:intron | 30.0% | |
| TGGAAGAAATTATGCCAAAT+GGG | + | 56442:10287-10306 | MS.gene051132:intergenic | 30.0% | |
| TTGAATCCAATCTATTGTAG+AGG | + | 56442:7817-7836 | MS.gene051132:intergenic | 30.0% | |
| TTGTTGGGAATCAATACTAA+GGG | - | 56442:8667-8686 | MS.gene051132:CDS | 30.0% | |
| TTTGTTGGGAATCAATACTA+AGG | - | 56442:8666-8685 | MS.gene051132:CDS | 30.0% | |
| ! | ACCATTCGTCTAATTTTGAA+AGG | + | 56442:10259-10278 | MS.gene051132:intergenic | 30.0% |
| ! | ATTGACTTTGAGAGAATTTG+AGG | - | 56442:10321-10340 | MS.gene051132:intron | 30.0% |
| ! | ATTGCCTTCTTTTATCTGAT+TGG | - | 56442:8833-8852 | MS.gene051132:intron | 30.0% |
| ! | ATTTTCATCAAGCATCTTTC+AGG | + | 56442:9855-9874 | MS.gene051132:intergenic | 30.0% |
| ! | CATCAAGATTCTTTTTATGC+AGG | - | 56442:9696-9715 | MS.gene051132:intron | 30.0% |
| ! | CTGTTCAAATTTTGTACACA+TGG | + | 56442:7936-7955 | MS.gene051132:intergenic | 30.0% |
| ! | TCAATTTTCCAAGTTGCATT+CGG | - | 56442:8924-8943 | MS.gene051132:CDS | 30.0% |
| ! | TGAAATCAAAGCATTACACA+GGG | - | 56442:10955-10974 | MS.gene051132:CDS | 30.0% |
| ! | TTGAAATCAAAGCATTACAC+AGG | - | 56442:10954-10973 | MS.gene051132:CDS | 30.0% |
| ! | TTGAATATTGATTGGAATGC+AGG | - | 56442:10778-10797 | MS.gene051132:CDS | 30.0% |
| !! | ATTCTGAACTTTGTTATTGC+TGG | - | 56442:9366-9385 | MS.gene051132:intron | 30.0% |
| !! | GTATTGATTCCCAACAAATA+TGG | + | 56442:8664-8683 | MS.gene051132:intergenic | 30.0% |
| !! | TTCTGAACTTTGTTATTGCT+GGG | - | 56442:9367-9386 | MS.gene051132:intron | 30.0% |
| !!! | GTTTATTTTAATGGCCAAGA+GGG | + | 56442:10349-10368 | MS.gene051132:intergenic | 30.0% |
| AAACATTTAAGCTGCTAGCA+AGG | + | 56442:8122-8141 | MS.gene051132:intergenic | 35.0% | |
| AAAGAATTACATCGGACTTG+AGG | - | 56442:8795-8814 | MS.gene051132:intron | 35.0% | |
| AAAGTTATGGGTTTCTGACT+GGG | + | 56442:10231-10250 | MS.gene051132:intergenic | 35.0% | |
| AACTCCACTATGATTGAAGA+CGG | + | 56442:10540-10559 | MS.gene051132:intergenic | 35.0% | |
| AATTCTCCACGAAGATGTTA+CGG | - | 56442:8423-8442 | MS.gene051132:CDS | 35.0% | |
| ACATGGAAAAAACCAGAAGA+AGG | + | 56442:10207-10226 | MS.gene051132:intergenic | 35.0% | |
| AGAGTGGAGATATTCTATCA+AGG | - | 56442:9298-9317 | MS.gene051132:intron | 35.0% | |
| AGCTAAGGACAATACTTTGA+GGG | - | 56442:8735-8754 | MS.gene051132:intron | 35.0% | |
| AGTCAAAAGTTAGACATCGT+TGG | + | 56442:7754-7773 | MS.gene051132:intergenic | 35.0% | |
| ATACATGAACCAAGAAAGTG+TGG | + | 56442:9409-9428 | MS.gene051132:intergenic | 35.0% | |
| ATGGGAGGATGAAATTCATA+TGG | - | 56442:9805-9824 | MS.gene051132:intron | 35.0% | |
| ATTCGTAGAAGGATGAAGTA+TGG | - | 56442:8270-8289 | MS.gene051132:CDS | 35.0% | |
| ATTTAAGCACGCTCTAACAA+AGG | + | 56442:10759-10778 | MS.gene051132:intergenic | 35.0% | |
| CAACAGTACAGATTTCTTGA+TGG | + | 56442:7644-7663 | MS.gene051132:intergenic | 35.0% | |
| CACATCCCTATAACTTTGTT+TGG | - | 56442:9984-10003 | MS.gene051132:intron | 35.0% | |
| CAGAAATTATGAGAGGAGTT+TGG | - | 56442:10030-10049 | MS.gene051132:intron | 35.0% | |
| CATCAAGAAATCTGTACTGT+TGG | - | 56442:7642-7661 | MS.gene051132:intron | 35.0% | |
| CCAACAAATATGGGAATTTC+TGG | + | 56442:8654-8673 | MS.gene051132:intergenic | 35.0% | |
| CCAGAAATTCCCATATTTGT+TGG | - | 56442:8651-8670 | MS.gene051132:CDS | 35.0% | |
| CTAGCAGCTTAAATGTTTCA+AGG | - | 56442:8124-8143 | MS.gene051132:CDS | 35.0% | |
| CTAGCCAATCAGATAAAAGA+AGG | + | 56442:8840-8859 | MS.gene051132:intergenic | 35.0% | |
| CTTTAGGCAGAAATTATGAG+AGG | - | 56442:10023-10042 | MS.gene051132:intron | 35.0% | |
| GAAAAGCCGTAAACTTGAAA+GGG | + | 56442:9898-9917 | MS.gene051132:intergenic | 35.0% | |
| GAGACTATACTTATAGGCAA+TGG | + | 56442:10185-10204 | MS.gene051132:intergenic | 35.0% | |
| GCATGCCAAACAAAGTTATA+GGG | + | 56442:9992-10011 | MS.gene051132:intergenic | 35.0% | |
| GCCTTTCAAAATTAGACGAA+TGG | - | 56442:10255-10274 | MS.gene051132:intron | 35.0% | |
| GTTAGGTAAATGTATGGAAC+CGG | + | 56442:10132-10151 | MS.gene051132:intergenic | 35.0% | |
| GTTGGATTTAAAAGATCCGA+TGG | - | 56442:7660-7679 | MS.gene051132:intron | 35.0% | |
| GTTTCTCAATATTGGATCAG+AGG | - | 56442:9067-9086 | MS.gene051132:CDS | 35.0% | |
| TAAGTATAGTCTCCTTCTTC+TGG | - | 56442:10192-10211 | MS.gene051132:intron | 35.0% | |
| TAGCTAAGGACAATACTTTG+AGG | - | 56442:8734-8753 | MS.gene051132:intron | 35.0% | |
| TAGGGTCCAAAAAATTGACT+TGG | - | 56442:7466-7485 | MS.gene051132:intron | 35.0% | |
| TATAAGCAAACTCCTTTCCT+AGG | + | 56442:10820-10839 | MS.gene051132:intergenic | 35.0% | |
| TCATACCAACCTTATGCAAT+GGG | - | 56442:9787-9806 | MS.gene051132:intron | 35.0% | |
| TCATGTTCTTACATCTGCAT+AGG | + | 56442:10094-10113 | MS.gene051132:intergenic | 35.0% | |
| TGAAAAGCCGTAAACTTGAA+AGG | + | 56442:9899-9918 | MS.gene051132:intergenic | 35.0% | |
| TGAACAATGTAGAGAAAGAG+TGG | - | 56442:9282-9301 | MS.gene051132:intron | 35.0% | |
| TGCTTGATTATTGCTTGGTT+AGG | + | 56442:10149-10168 | MS.gene051132:intergenic | 35.0% | |
| TGCTTGGTTAGGTAAATGTA+TGG | + | 56442:10138-10157 | MS.gene051132:intergenic | 35.0% | |
| TGGGAGGATGAAATTCATAT+GGG | - | 56442:9806-9825 | MS.gene051132:intron | 35.0% | |
| TTGAAGGATTTACTAGGAGA+TGG | - | 56442:8344-8363 | MS.gene051132:intron | 35.0% | |
| ! | ACTTGCAGTATCAAAAGCAT+TGG | + | 56442:9000-9019 | MS.gene051132:intergenic | 35.0% |
| ! | CAAGGAAGTACAAAACATAC+AGG | - | 56442:7162-7181 | MS.gene051132:CDS | 35.0% |
| ! | TCCGATGTAATTCTTTTCTG+AGG | + | 56442:8791-8810 | MS.gene051132:intergenic | 35.0% |
| !! | AACTCTAAAACACGAACCAT+CGG | + | 56442:7679-7698 | MS.gene051132:intergenic | 35.0% |
| !! | AGAAAGCCCTTTCAAGTTTA+CGG | - | 56442:9889-9908 | MS.gene051132:intron | 35.0% |
| !! | ATGGCGGTAACTTTGATTTT+CGG | + | 56442:7625-7644 | MS.gene051132:intergenic | 35.0% |
| !! | TCGTCTAATTTTGAAAGGCA+GGG | + | 56442:10254-10273 | MS.gene051132:intergenic | 35.0% |
| !! | TTCGTCTAATTTTGAAAGGC+AGG | + | 56442:10255-10274 | MS.gene051132:intergenic | 35.0% |
| !!! | AAGTCAATTTTTTGGACCCT+AGG | + | 56442:7467-7486 | MS.gene051132:intergenic | 35.0% |
| !!! | CGTTTATTTTAATGGCCAAG+AGG | + | 56442:10350-10369 | MS.gene051132:intergenic | 35.0% |
| !!! | GAGGATCCAAGTCAATTTTT+TGG | + | 56442:7475-7494 | MS.gene051132:intergenic | 35.0% |
| !!! | TTTCAAGTTTACGGCTTTTC+AGG | - | 56442:9898-9917 | MS.gene051132:intron | 35.0% |
| AAGTTATGGGTTTCTGACTG+GGG | + | 56442:10230-10249 | MS.gene051132:intergenic | 40.0% | |
| AATAAACGTTGAATCGCTGC+TGG | - | 56442:10362-10381 | MS.gene051132:intron | 40.0% | |
| ACTGAACTTAACAGCATGTG+TGG | - | 56442:8948-8967 | MS.gene051132:CDS | 40.0% | |
| AGAGCTACATCTGTTACACA+TGG | + | 56442:9529-9548 | MS.gene051132:intergenic | 40.0% | |
| AGTCGAAGCTAAGAGGATAA+AGG | + | 56442:8610-8629 | MS.gene051132:intergenic | 40.0% | |
| ATCAAGGTTTCTGCAAGTGA+AGG | - | 56442:9314-9333 | MS.gene051132:intron | 40.0% | |
| ATTCTCCACGAAGATGTTAC+GGG | - | 56442:8424-8443 | MS.gene051132:CDS | 40.0% | |
| ATTGCCATCAAAGAAGCCTA+TGG | - | 56442:10398-10417 | MS.gene051132:intron | 40.0% | |
| CAGTACAGATTTCTTGATGG+CGG | + | 56442:7641-7660 | MS.gene051132:intergenic | 40.0% | |
| CTCAGTGGATAGAAGAGTTT+GGG | + | 56442:8708-8727 | MS.gene051132:intergenic | 40.0% | |
| CTGTCAATTGTCTCAATGGT+GGG | - | 56442:7430-7449 | MS.gene051132:intron | 40.0% | |
| GAAAGTTATGGGTTTCTGAC+TGG | + | 56442:10232-10251 | MS.gene051132:intergenic | 40.0% | |
| GAGGATAAAGGTCTGTTTGT+CGG | + | 56442:8598-8617 | MS.gene051132:intergenic | 40.0% | |
| GCTTACACTCATAACCAAAG+CGG | - | 56442:8759-8778 | MS.gene051132:intron | 40.0% | |
| GGCATGCCAAACAAAGTTAT+AGG | + | 56442:9993-10012 | MS.gene051132:intergenic | 40.0% | |
| GGGAGGATGAAATTCATATG+GGG | - | 56442:9807-9826 | MS.gene051132:intron | 40.0% | |
| GTAAACTTGAAAGGGCTTTC+TGG | + | 56442:9890-9909 | MS.gene051132:intergenic | 40.0% | |
| GTCATACCAACCTTATGCAA+TGG | - | 56442:9786-9805 | MS.gene051132:intron | 40.0% | |
| TATTGCTGGGAAAGACACAA+CGG | - | 56442:9380-9399 | MS.gene051132:intron | 40.0% | |
| TCCAAGACTGCAACATTATG+CGG | - | 56442:7578-7597 | MS.gene051132:intron | 40.0% | |
| TGAAAGGCAGGGAAAGTTAT+GGG | + | 56442:10243-10262 | MS.gene051132:intergenic | 40.0% | |
| TGAGCTGTCAATTGTCTCAA+TGG | - | 56442:7426-7445 | MS.gene051132:intron | 40.0% | |
| TGTCAATTGTCTCAATGGTG+GGG | - | 56442:7431-7450 | MS.gene051132:intron | 40.0% | |
| TTACATCTGCATAGGAAGTC+TGG | + | 56442:10086-10105 | MS.gene051132:intergenic | 40.0% | |
| TTATCTCCATGCAACACTCA+CGG | - | 56442:9561-9580 | MS.gene051132:CDS | 40.0% | |
| TTGAAAGGCAGGGAAAGTTA+TGG | + | 56442:10244-10263 | MS.gene051132:intergenic | 40.0% | |
| TTGGATCAGAGGCAACATTA+AGG | - | 56442:9078-9097 | MS.gene051132:CDS | 40.0% | |
| TTGGGTCCTCTACAATAGAT+TGG | - | 56442:7808-7827 | MS.gene051132:intron | 40.0% | |
| TTTCATCCTCCCATTGCATA+AGG | + | 56442:9799-9818 | MS.gene051132:intergenic | 40.0% | |
| ! | ATATTGATTGGAATGCAGGC+AGG | - | 56442:10782-10801 | MS.gene051132:CDS | 40.0% |
| ! | ATTGTTATGCTGACTGCTGA+GGG | - | 56442:7894-7913 | MS.gene051132:intron | 40.0% |
| ! | GTCAATGTTTATCGGCTGTA+TGG | + | 56442:10307-10326 | MS.gene051132:intergenic | 40.0% |
| ! | TATTGTTATGCTGACTGCTG+AGG | - | 56442:7893-7912 | MS.gene051132:intron | 40.0% |
| ! | TTCAAAAGTAGCCTTACCAC+AGG | + | 56442:9613-9632 | MS.gene051132:intergenic | 40.0% |
| ! | TTCTTTGATGGCAATGTTGG+TGG | + | 56442:10393-10412 | MS.gene051132:intergenic | 40.0% |
| !! | AAGAAGTATCATCCTGTTGC+TGG | - | 56442:7080-7099 | MS.gene051132:CDS | 40.0% |
| !! | GAAGCTTTTTCTTGTACTGC+AGG | + | 56442:9447-9466 | MS.gene051132:intergenic | 40.0% |
| !! | TGGCGGTAACTTTGATTTTC+GGG | + | 56442:7624-7643 | MS.gene051132:intergenic | 40.0% |
| AATTACATCGGACTTGAGGC+TGG | - | 56442:8799-8818 | MS.gene051132:intron | 45.0% | |
| ACAGGAAGTGGAATTGGTGA+TGG | + | 56442:10435-10454 | MS.gene051132:intergenic | 45.0% | |
| ACGAATGGTTTAGGCCCATT+TGG | - | 56442:10270-10289 | MS.gene051132:intron | 45.0% | |
| ACTTTATCCTGCAGTTCCTG+TGG | - | 56442:9594-9613 | MS.gene051132:CDS | 45.0% | |
| ATCCTCCCATTGCATAAGGT+TGG | + | 56442:9795-9814 | MS.gene051132:intergenic | 45.0% | |
| ATCCTCTTAGCTTCGACTGA+CGG | - | 56442:8612-8631 | MS.gene051132:CDS | 45.0% | |
| ATGTGTGGATCAAGTGAGGA+AGG | - | 56442:8963-8982 | MS.gene051132:CDS | 45.0% | |
| ATTGAAGACGGTGCAAGCAT+GGG | + | 56442:10528-10547 | MS.gene051132:intergenic | 45.0% | |
| CATGCCACAACTGTGACTTT+AGG | - | 56442:10007-10026 | MS.gene051132:intron | 45.0% | |
| CCAAACTCTTCTATCCACTG+AGG | - | 56442:8706-8725 | MS.gene051132:CDS | 45.0% | |
| CCTCAGTGGATAGAAGAGTT+TGG | + | 56442:8709-8728 | MS.gene051132:intergenic | 45.0% | |
| CCTTAGCTAAAATGCCTCAG+TGG | + | 56442:8723-8742 | MS.gene051132:intergenic | 45.0% | |
| GAAGGAACAGGAAGTGGAAT+TGG | + | 56442:10441-10460 | MS.gene051132:intergenic | 45.0% | |
| GATCCTCTACAGCTGCATTA+CGG | - | 56442:7488-7507 | MS.gene051132:intron | 45.0% | |
| GCTGATGACACATTACCAGA+TGG | - | 56442:9736-9755 | MS.gene051132:intron | 45.0% | |
| GCTGTCAATTGTCTCAATGG+TGG | - | 56442:7429-7448 | MS.gene051132:intron | 45.0% | |
| GTCAATTGTCTCAATGGTGG+GGG | - | 56442:7432-7451 | MS.gene051132:intron | 45.0% | |
| GTTCAGTTCCGAATGCAACT+TGG | + | 56442:8935-8954 | MS.gene051132:intergenic | 45.0% | |
| TACCAACCTTATGCAATGGG+AGG | - | 56442:9790-9809 | MS.gene051132:intron | 45.0% | |
| TCTGCCTAAAGTCACAGTTG+TGG | + | 56442:10014-10033 | MS.gene051132:intergenic | 45.0% | |
| TGCACCGTCTTCAATCATAG+TGG | - | 56442:10533-10552 | MS.gene051132:intron | 45.0% | |
| TGTTGCAGTCTTGGACATGT+AGG | + | 56442:7573-7592 | MS.gene051132:intergenic | 45.0% | |
| TTGAATACAGTGCCAGCAAC+AGG | + | 56442:7095-7114 | MS.gene051132:intergenic | 45.0% | |
| ! | CATGAACCAAGAAAGTGTGG+CGG | + | 56442:9406-9425 | MS.gene051132:intergenic | 45.0% |
| ! | GAGAATTTGAGGTTCCCTCT+TGG | - | 56442:10332-10351 | MS.gene051132:intron | 45.0% |
| ! | GATGGAATTTTCGCCGTTGA+TGG | - | 56442:8362-8381 | MS.gene051132:intron | 45.0% |
| ! | GGCTTCTTTGATGGCAATGT+TGG | + | 56442:10396-10415 | MS.gene051132:intergenic | 45.0% |
| ! | TTCTGAGGAATTGTCCGCTT+TGG | + | 56442:8776-8795 | MS.gene051132:intergenic | 45.0% |
| !! | ATTACGGTGCTGCAGCTTTA+GGG | - | 56442:7504-7523 | MS.gene051132:intron | 45.0% |
| !!! | CCACTGAGGCATTTTAGCTA+AGG | - | 56442:8720-8739 | MS.gene051132:intron | 45.0% |
| AACCGTCAGTCGAAGCTAAG+AGG | + | 56442:8617-8636 | MS.gene051132:intergenic | 50.0% | |
| ACATTATGCGGCAGCTGTAG+AGG | - | 56442:7590-7609 | MS.gene051132:intron | 50.0% | |
| ACGCCATTTCTCGCCATCAA+CGG | + | 56442:8378-8397 | MS.gene051132:intergenic | 50.0% | |
| AGGTCTGTTTGTCGGTGCAT+CGG | + | 56442:8590-8609 | MS.gene051132:intergenic | 50.0% | |
| ATCCTGCAGTTCCTGTGGTA+AGG | - | 56442:9599-9618 | MS.gene051132:CDS | 50.0% | |
| CAGCATGTGTGGATCAAGTG+AGG | - | 56442:8959-8978 | MS.gene051132:CDS | 50.0% | |
| CAGTCTTGGACATGTAGGCA+CGG | + | 56442:7568-7587 | MS.gene051132:intergenic | 50.0% | |
| CATTATGCGGCAGCTGTAGA+GGG | - | 56442:7591-7610 | MS.gene051132:intron | 50.0% | |
| GAAGTCCCGTAACATCTTCG+TGG | + | 56442:8432-8451 | MS.gene051132:intergenic | 50.0% | |
| GATTGAAGACGGTGCAAGCA+TGG | + | 56442:10529-10548 | MS.gene051132:intergenic | 50.0% | |
| GCCGCATAATGTTGCAGTCT+TGG | + | 56442:7582-7601 | MS.gene051132:intergenic | 50.0% | |
| GCGAGAAATGGCGTGAACAA+AGG | - | 56442:8384-8403 | MS.gene051132:intron | 50.0% | |
| GTTGTGGGATGAGCTAGTGA+GGG | - | 56442:10572-10591 | MS.gene051132:intron | 50.0% | |
| TCCTCGGATATGCCTAGGAA+AGG | - | 56442:10805-10824 | MS.gene051132:CDS | 50.0% | |
| TCCTTTCCTAGGCATATCCG+AGG | + | 56442:10809-10828 | MS.gene051132:intergenic | 50.0% | |
| TGTTGTGGGATGAGCTAGTG+AGG | - | 56442:10571-10590 | MS.gene051132:intron | 50.0% | |
| TTGGTGCATGTGGAATGAGC+TGG | + | 56442:10465-10484 | MS.gene051132:intergenic | 50.0% | |
| ! | ATGCTGACTGCTGAGGGATA+TGG | - | 56442:7900-7919 | MS.gene051132:intron | 50.0% |
| ! | ATTGTCTCAATGGTGGGGGT+TGG | - | 56442:7436-7455 | MS.gene051132:intron | 50.0% |
| ! | CATATGGGGTGATGATGCAG+AGG | - | 56442:9821-9840 | MS.gene051132:intron | 50.0% |
| ! | TTGTCTCAATGGTGGGGGTT+GGG | - | 56442:7437-7456 | MS.gene051132:intron | 50.0% |
| !! | CATTACGGTGCTGCAGCTTT+AGG | - | 56442:7503-7522 | MS.gene051132:intron | 50.0% |
| AAAGAAGCCTATGGCGCCAC+TGG | - | 56442:10407-10426 | MS.gene051132:intron | 55.0% | |
| AGCCTTACCACAGGAACTGC+AGG | + | 56442:9604-9623 | MS.gene051132:intergenic | 55.0% | |
| AGGTTGTGCCAAAACTGGGC+AGG | + | 56442:10502-10521 | MS.gene051132:intergenic | 55.0% | |
| CATGTGGAATGAGCTGGCGA+AGG | + | 56442:10459-10478 | MS.gene051132:intergenic | 55.0% | |
| GAATGAGCTGGCGAAGGAAC+AGG | + | 56442:10453-10472 | MS.gene051132:intergenic | 55.0% | |
| GCACCGTAATGCAGCTGTAG+AGG | + | 56442:7494-7513 | MS.gene051132:intergenic | 55.0% | |
| GCGCAGGTTGTGCCAAAACT+GGG | + | 56442:10506-10525 | MS.gene051132:intergenic | 55.0% | |
| GGCGCCATAGGCTTCTTTGA+TGG | + | 56442:10405-10424 | MS.gene051132:intergenic | 55.0% | |
| GTGGGGGTTGGGATTTCCTA+GGG | - | 56442:7448-7467 | MS.gene051132:intron | 55.0% | |
| TGCCAAAACTGGGCAGGAAG+AGG | + | 56442:10496-10515 | MS.gene051132:intergenic | 55.0% | |
| TGGGTTTCTGACTGGGGACA+TGG | + | 56442:10224-10243 | MS.gene051132:intergenic | 55.0% | |
| TTGGAATGCAGGCAGGTCCT+CGG | - | 56442:10789-10808 | MS.gene051132:CDS | 55.0% | |
| TTGTCGGTGCATCGGACTTG+AGG | + | 56442:8582-8601 | MS.gene051132:intergenic | 55.0% | |
| ! | GAGTCTCCGTGAGTGTTGCA+TGG | + | 56442:9570-9589 | MS.gene051132:intergenic | 55.0% |
| ! | TGCCTCTTCCTGCCCAGTTT+TGG | - | 56442:10491-10510 | MS.gene051132:intron | 55.0% |
| !! | GGAATTGGTGATGGTGCCAG+TGG | + | 56442:10426-10445 | MS.gene051132:intergenic | 55.0% |
| !! | TCGCCGTTGATGGCGAGAAA+TGG | - | 56442:8372-8391 | MS.gene051132:intron | 55.0% |
| AACTGGGCAGGAAGAGGCAG+AGG | + | 56442:10490-10509 | MS.gene051132:intergenic | 60.0% | |
| CAACGGCCGCCACACTTTCT+TGG | - | 56442:9397-9416 | MS.gene051132:intron | 60.0% | |
| CGGTGCATCGGACTTGAGGT+AGG | + | 56442:8578-8597 | MS.gene051132:intergenic | 60.0% | |
| GCAGGTCCTCGGATATGCCT+AGG | - | 56442:10800-10819 | MS.gene051132:CDS | 60.0% | |
| GCTGGCGAAGGAACAGGAAG+TGG | + | 56442:10447-10466 | MS.gene051132:intergenic | 60.0% | |
| GGCGCAGGTTGTGCCAAAAC+TGG | + | 56442:10507-10526 | MS.gene051132:intergenic | 60.0% | |
| GGTGGGGGTTGGGATTTCCT+AGG | - | 56442:7447-7466 | MS.gene051132:intron | 60.0% | |
| ! | GCAGGAAGAGGCAGAGGTGT+TGG | + | 56442:10484-10503 | MS.gene051132:intergenic | 60.0% |
| !! | GCTGCAGCTTTAGGGACCGT+TGG | - | 56442:7512-7531 | MS.gene051132:intron | 60.0% |
| !! | GGCAGAGGTGTTGGTGCATG+TGG | + | 56442:10475-10494 | MS.gene051132:intergenic | 60.0% |
| ! | GATGGTGCCAGTGGCGCCAT+AGG | + | 56442:10417-10436 | MS.gene051132:intergenic | 65.0% |
| GACGGTGCAAGCATGGGCGC+AGG | + | 56442:10522-10541 | MS.gene051132:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 56442 | gene | 7049 | 10982 | 7049 | ID=MS.gene051132 |
| 56442 | mRNA | 7049 | 10982 | 7049 | ID=MS.gene051132.t1;Parent=MS.gene051132 |
| 56442 | exon | 10757 | 10982 | 10757 | ID=MS.gene051132.t1.exon1;Parent=MS.gene051132.t1 |
| 56442 | CDS | 10757 | 10982 | 10757 | ID=cds.MS.gene051132.t1;Parent=MS.gene051132.t1 |
| 56442 | exon | 9493 | 9708 | 9493 | ID=MS.gene051132.t1.exon2;Parent=MS.gene051132.t1 |
| 56442 | CDS | 9493 | 9708 | 9493 | ID=cds.MS.gene051132.t1;Parent=MS.gene051132.t1 |
| 56442 | exon | 8844 | 9134 | 8844 | ID=MS.gene051132.t1.exon3;Parent=MS.gene051132.t1 |
| 56442 | CDS | 8844 | 9134 | 8844 | ID=cds.MS.gene051132.t1;Parent=MS.gene051132.t1 |
| 56442 | exon | 8582 | 8737 | 8582 | ID=MS.gene051132.t1.exon4;Parent=MS.gene051132.t1 |
| 56442 | CDS | 8582 | 8737 | 8582 | ID=cds.MS.gene051132.t1;Parent=MS.gene051132.t1 |
| 56442 | exon | 8416 | 8550 | 8416 | ID=MS.gene051132.t1.exon5;Parent=MS.gene051132.t1 |
| 56442 | CDS | 8416 | 8550 | 8416 | ID=cds.MS.gene051132.t1;Parent=MS.gene051132.t1 |
| 56442 | exon | 8248 | 8313 | 8248 | ID=MS.gene051132.t1.exon6;Parent=MS.gene051132.t1 |
| 56442 | CDS | 8248 | 8313 | 8248 | ID=cds.MS.gene051132.t1;Parent=MS.gene051132.t1 |
| 56442 | exon | 8112 | 8171 | 8112 | ID=MS.gene051132.t1.exon7;Parent=MS.gene051132.t1 |
| 56442 | CDS | 8112 | 8171 | 8112 | ID=cds.MS.gene051132.t1;Parent=MS.gene051132.t1 |
| 56442 | exon | 7049 | 7231 | 7049 | ID=MS.gene051132.t1.exon8;Parent=MS.gene051132.t1 |
| 56442 | CDS | 7049 | 7231 | 7049 | ID=cds.MS.gene051132.t1;Parent=MS.gene051132.t1 |
| Gene Sequence |
| Protein sequence |
