Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051168.t1 | KEH19047.1 | 98 | 352 | 7 | 0 | 1 | 352 | 1 | 352 | 4.50E-201 | 710.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051168.t1 | A0A072TNR2 | 98.0 | 352 | 7 | 0 | 1 | 352 | 1 | 352 | 3.2e-201 | 710.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051168 | MS.gene23677 | 0.934838 | 2.17E-96 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051168.t1 | MTR_8g036165 | 98.011 | 352 | 7 | 0 | 1 | 352 | 1 | 352 | 0.0 | 719 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051168.t1 | AT5G48020 | 76.705 | 352 | 82 | 0 | 1 | 352 | 1 | 352 | 0.0 | 565 |
Find 89 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCTCTAACACCAAATTTC+AGG | 0.195500 | 8.2:+63017916 | MS.gene051168:CDS |
| TCCATAGTTTCTTTCCATTC+TGG | 0.228050 | 8.2:-63018894 | None:intergenic |
| GGAAAACCTTCGGGAATTAC+TGG | 0.268952 | 8.2:-63018873 | None:intergenic |
| CTGTTGGTGCTGATCTTAAA+TGG | 0.294521 | 8.2:+63017867 | MS.gene051168:CDS |
| CTTAACTTTCTAACAATTCA+TGG | 0.312683 | 8.2:+63019996 | MS.gene051168:CDS |
| CATGGTAGAAGTAGATTTCC+TGG | 0.325103 | 8.2:+63020014 | MS.gene051168:CDS |
| TTCCATTCTGGAAAACCTTC+GGG | 0.337961 | 8.2:-63018882 | None:intergenic |
| AGCTGCATTGATTGCATCAA+TGG | 0.338784 | 8.2:-63020578 | None:intergenic |
| TACATAGGTGGTTGCTGAAA+TGG | 0.348701 | 8.2:+63019054 | MS.gene051168:intron |
| GTTGCTGAAATGGCAGCTAT+TGG | 0.355888 | 8.2:+63019064 | MS.gene051168:CDS |
| AAGTGCTCCGGTTTCACTTA+AGG | 0.356592 | 8.2:-63017450 | None:intergenic |
| GGAAAGAAACTATGGATTCC+TGG | 0.357071 | 8.2:+63018901 | MS.gene051168:CDS |
| TCCAGAATGGAAAGAAACTA+TGG | 0.362810 | 8.2:+63018893 | MS.gene051168:CDS |
| CCGCATCTGCTAGCTCCAAC+AGG | 0.366336 | 8.2:+63019915 | MS.gene051168:CDS |
| AACCTGAAATTTGGTGTTAG+AGG | 0.373948 | 8.2:-63017918 | None:intergenic |
| TTTCCATTCTGGAAAACCTT+CGG | 0.382603 | 8.2:-63018883 | None:intergenic |
| GATTTCCTGGATTGAACATC+TGG | 0.385430 | 8.2:+63020027 | MS.gene051168:CDS |
| TCTTCATCCACCAAACTTCT+CGG | 0.398610 | 8.2:-63017794 | None:intergenic |
| TGATCGTTTCATTGATATGA+TGG | 0.405471 | 8.2:+63017508 | MS.gene051168:CDS |
| GTATGAGGTCGATGTTCTTC+CGG | 0.410370 | 8.2:-63017842 | None:intergenic |
| GAAATGGCAGCTATTGGGTT+TGG | 0.417350 | 8.2:+63019070 | MS.gene051168:CDS |
| TTGAACATCTGGCTAAGAAA+TGG | 0.428381 | 8.2:+63020038 | MS.gene051168:CDS |
| AGAGATGTAAATGCGTCCTT+TGG | 0.431382 | 8.2:-63019097 | None:intergenic |
| TTTGCTTGCCAGTGGCGATT+CGG | 0.436293 | 8.2:-63020810 | None:intergenic |
| TTGCTGAAATGGCAGCTATT+GGG | 0.439102 | 8.2:+63019065 | MS.gene051168:CDS |
| AGTGGAAGTACCGAGAAGTT+TGG | 0.442306 | 8.2:+63017784 | MS.gene051168:CDS |
| ACGAAGTAGTTGCCACAAAC+AGG | 0.452864 | 8.2:+63020554 | MS.gene051168:CDS |
| TGACATCGGCGCAGAGGGAT+TGG | 0.461396 | 8.2:-63017421 | None:intergenic |
| GAAAGAAACTATGGATTCCT+GGG | 0.462274 | 8.2:+63018902 | MS.gene051168:CDS |
| GAGATCTCATTTGCATTACC+AGG | 0.471421 | 8.2:+63017574 | MS.gene051168:CDS |
| ACGGGAGGGGACTGCATAGC+TGG | 0.474833 | 8.2:+63020526 | MS.gene051168:CDS |
| AGCCGCACCTTAAGTGAAAC+CGG | 0.475604 | 8.2:+63017443 | MS.gene051168:CDS |
| CATTTAAGATCAGCACCAAC+AGG | 0.478310 | 8.2:-63017866 | None:intergenic |
| GATAGAGTGGTTAACGGGAG+GGG | 0.481108 | 8.2:+63020513 | MS.gene051168:intron |
| ATTTACATCTCTTATGAAGC+TGG | 0.483911 | 8.2:+63019108 | MS.gene051168:CDS |
| GGTTGTCTTCTTATTCAGAC+AGG | 0.484812 | 8.2:+63020089 | MS.gene051168:CDS |
| ATGCAGATAGAGTGGTTAAC+GGG | 0.491844 | 8.2:+63020508 | MS.gene051168:intron |
| TGCATCAATGGTCCTGTTTG+TGG | 0.493169 | 8.2:-63020566 | None:intergenic |
| CTTAGCCAGATGTTCAATCC+AGG | 0.494189 | 8.2:-63020032 | None:intergenic |
| ACTTAAGGTGCGGCTGACAT+CGG | 0.510359 | 8.2:-63017435 | None:intergenic |
| CCTGTTGGAGCTAGCAGATG+CGG | 0.513776 | 8.2:-63019915 | None:intergenic |
| TGGATCGCGGTCGTTTAAAA+CGG | 0.516356 | 8.2:-63017393 | None:intergenic |
| CTGTTGGAGCTAGCAGATGC+GGG | 0.518133 | 8.2:-63019914 | None:intergenic |
| AATGCAAATGAGATCTCTCT+TGG | 0.518231 | 8.2:-63017568 | None:intergenic |
| TGAATAAGAAGACAACCTAC+TGG | 0.518320 | 8.2:-63020083 | None:intergenic |
| GATGCGGTTCTGAAGCCCTT+GGG | 0.519746 | 8.2:+63020779 | MS.gene051168:CDS |
| AATGCAGATAGAGTGGTTAA+CGG | 0.526453 | 8.2:+63020507 | MS.gene051168:intron |
| TCTTATTCAGACAGGAAAGC+AGG | 0.527797 | 8.2:+63020097 | MS.gene051168:CDS |
| TATGAAGATAGATCTATCAC+TGG | 0.532690 | 8.2:-63017362 | None:intergenic |
| TATTCTCCTGCACACATTGG+AGG | 0.534371 | 8.2:-63020836 | None:intergenic |
| GCTTTCTGTAATCAATCTCA+AGG | 0.543658 | 8.2:+63020871 | MS.gene051168:CDS |
| ACCTGAAATTTGGTGTTAGA+GGG | 0.544097 | 8.2:-63017917 | None:intergenic |
| GCGGCTGACATCGGCGCAGA+GGG | 0.549280 | 8.2:-63017426 | None:intergenic |
| CATCGGCGCAGAGGGATTGG+AGG | 0.552825 | 8.2:-63017418 | None:intergenic |
| AAATACCCTCCAATGTGTGC+AGG | 0.553860 | 8.2:+63020830 | MS.gene051168:CDS |
| TGGGGTTACGCCGGAGAGAG+TGG | 0.554888 | 8.2:+63017766 | MS.gene051168:CDS |
| GCGCAGAGGGATTGGAGGCG+TGG | 0.555319 | 8.2:-63017413 | None:intergenic |
| AGATGCGGTTCTGAAGCCCT+TGG | 0.555896 | 8.2:+63020778 | MS.gene051168:CDS |
| ACATATTCTCCTGCACACAT+TGG | 0.557119 | 8.2:-63020839 | None:intergenic |
| GGAAGTACCGAGAAGTTTGG+TGG | 0.563059 | 8.2:+63017787 | MS.gene051168:CDS |
| GGAGGGTATTTGCTTGCCAG+TGG | 0.565381 | 8.2:-63020818 | None:intergenic |
| CTCGGTACTTCCACTCTCTC+CGG | 0.569660 | 8.2:-63017776 | None:intergenic |
| GTTTCAAAATGCAGATAGAG+TGG | 0.571025 | 8.2:+63020500 | MS.gene051168:intron |
| AGAGAAAGTGAAAGAAATGC+CGG | 0.573901 | 8.2:+63017823 | MS.gene051168:CDS |
| TATTGGGTTTGGTCTTCCAA+AGG | 0.574185 | 8.2:+63019081 | MS.gene051168:CDS |
| TCAGCACCAACAGGAGTATG+AGG | 0.576196 | 8.2:-63017857 | None:intergenic |
| CATCGACCTCATACTCCTGT+TGG | 0.579196 | 8.2:+63017851 | MS.gene051168:CDS |
| CGCATCTGCTAGCTCCAACA+GGG | 0.584453 | 8.2:+63019916 | MS.gene051168:CDS |
| ATTCTCCTGCACACATTGGA+GGG | 0.595895 | 8.2:-63020835 | None:intergenic |
| GGGATTGGAGGCGTGGATCG+CGG | 0.598384 | 8.2:-63017406 | None:intergenic |
| GATGTAGGTTGGGGTTACGC+CGG | 0.598767 | 8.2:+63017757 | MS.gene051168:intron |
| AGATAGAGTGGTTAACGGGA+GGG | 0.600235 | 8.2:+63020512 | MS.gene051168:intron |
| CGATTCGGCAAAATGTCCCA+AGG | 0.600431 | 8.2:-63020795 | None:intergenic |
| TGGCGAATCTTGAACTCATG+AGG | 0.601736 | 8.2:-63017548 | None:intergenic |
| CTCCGGTTTCACTTAAGGTG+CGG | 0.607440 | 8.2:-63017445 | None:intergenic |
| TGCGGCTGACATCGGCGCAG+AGG | 0.623156 | 8.2:-63017427 | None:intergenic |
| CAGATAGAGTGGTTAACGGG+AGG | 0.624676 | 8.2:+63020511 | MS.gene051168:intron |
| CTTTCTGTAATCAATCTCAA+GGG | 0.642636 | 8.2:+63020872 | MS.gene051168:CDS |
| CTTATGGAGAGTCTCGTCGA+CGG | 0.649611 | 8.2:+63020618 | MS.gene051168:CDS |
| TGCGCACATAGCATCAGATG+CGG | 0.662623 | 8.2:+63020763 | MS.gene051168:CDS |
| GCAGAGCCAGTAATTCCCGA+AGG | 0.666440 | 8.2:+63018867 | MS.gene051168:CDS |
| ATGAAGATAGATCTATCACT+GGG | 0.672660 | 8.2:-63017361 | None:intergenic |
| GAAACGATCATTATCTTCGA+CGG | 0.676141 | 8.2:-63017495 | None:intergenic |
| GATTCGGCAAAATGTCCCAA+GGG | 0.677886 | 8.2:-63020794 | None:intergenic |
| GGTCGTTTAAAACGGCGGAG+AGG | 0.685934 | 8.2:-63017385 | None:intergenic |
| ATCGCGGTCGTTTAAAACGG+CGG | 0.689469 | 8.2:-63017390 | None:intergenic |
| AAAGAAACTATGGATTCCTG+GGG | 0.696839 | 8.2:+63018903 | MS.gene051168:CDS |
| GTCGAAGTGAAGGTTCCAGT+AGG | 0.704557 | 8.2:+63020068 | MS.gene051168:CDS |
| TTATCTTCGACGGTGCATCG+CGG | 0.747943 | 8.2:-63017485 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGTTATTTTTTTTTTTTG+AGG | + | chr8.2:63018980-63018999 | MS.gene051168:intron | 10.0% |
| !!! | ATGTTATTTTTTTTTTTTGA+GGG | + | chr8.2:63018981-63019000 | MS.gene051168:intron | 10.0% |
| !! | AAAAATCAATACTTTAACAA+TGG | + | chr8.2:63018209-63018228 | MS.gene051168:intron | 15.0% |
| !! | AAATGTAAAAGTAAAGAATA+GGG | - | chr8.2:63019681-63019700 | None:intergenic | 15.0% |
| !! | TAAATGTAAAAGTAAAGAAT+AGG | - | chr8.2:63019682-63019701 | None:intergenic | 15.0% |
| !!! | TATGTTAAAACAAAAGATTT+TGG | + | chr8.2:63019216-63019235 | MS.gene051168:intron | 15.0% |
| !!! | TTATTTTACAAAAAGTCATT+AGG | + | chr8.2:63018495-63018514 | MS.gene051168:intron | 15.0% |
| !!! | TTTTTATTTTATCACTTTCT+AGG | - | chr8.2:63018598-63018617 | None:intergenic | 15.0% |
| !! | AAAAAAAGAAACCTGAAATT+TGG | - | chr8.2:63017930-63017949 | None:intergenic | 20.0% |
| !! | AAACATAGGTAAAAATATCA+AGG | - | chr8.2:63019856-63019875 | None:intergenic | 20.0% |
| !! | AACATAGGTAAAAATATCAA+GGG | - | chr8.2:63019855-63019874 | None:intergenic | 20.0% |
| !! | AAGTAAGTCATATAATTGAT+TGG | + | chr8.2:63018949-63018968 | MS.gene051168:intron | 20.0% |
| !! | ACAAATATAATGTTAAACAG+TGG | - | chr8.2:63019358-63019377 | None:intergenic | 20.0% |
| !! | ATTTATTTATGTTTGTCCAT+AGG | + | chr8.2:63019697-63019716 | MS.gene051168:intron | 20.0% |
| !! | GATACAATATCTTCAAATAT+AGG | - | chr8.2:63020136-63020155 | None:intergenic | 20.0% |
| !! | TGCGATTGTTTATAATTATA+AGG | + | chr8.2:63018350-63018369 | MS.gene051168:intron | 20.0% |
| !! | TTTATTTATGTTTGTCCATA+GGG | + | chr8.2:63019698-63019717 | MS.gene051168:intron | 20.0% |
| !!! | AATAGTACAGTTTTTTTGAA+TGG | - | chr8.2:63018419-63018438 | None:intergenic | 20.0% |
| !!! | ATCTTAAATGGAGATATTTT+TGG | + | chr8.2:63017879-63017898 | MS.gene051168:CDS | 20.0% |
| !!! | CAACTTGTTTAAAAAATGTT+GGG | + | chr8.2:63019551-63019570 | MS.gene051168:intron | 20.0% |
| !!! | GTTTAAGATAAAAGAAAATG+TGG | + | chr8.2:63018262-63018281 | MS.gene051168:intron | 20.0% |
| !!! | TCAACTTGTTTAAAAAATGT+TGG | + | chr8.2:63019550-63019569 | MS.gene051168:intron | 20.0% |
| !!! | TTTTTGTATTCTCTCATTTA+CGG | + | chr8.2:63018375-63018394 | MS.gene051168:intron | 20.0% |
| ! | AAAATTAGTCGAAAACATTG+AGG | + | chr8.2:63018614-63018633 | MS.gene051168:intron | 25.0% |
| ! | AAATTAGTCGAAAACATTGA+GGG | + | chr8.2:63018615-63018634 | MS.gene051168:intron | 25.0% |
| ! | ACAAAAAGAAAACACACAAA+AGG | - | chr8.2:63020482-63020501 | None:intergenic | 25.0% |
| ! | ATACAATCAGTAGAAAACAT+AGG | - | chr8.2:63019870-63019889 | None:intergenic | 25.0% |
| ! | CAATAGAATAGTCATCAAAT+GGG | + | chr8.2:63019650-63019669 | MS.gene051168:intron | 25.0% |
| ! | CTAAAAAGTTCAGCAAAAAA+TGG | - | chr8.2:63020275-63020294 | None:intergenic | 25.0% |
| ! | CTTAACTTTCTAACAATTCA+TGG | + | chr8.2:63019996-63020015 | MS.gene051168:CDS | 25.0% |
| ! | TAAAGTAAAATTGTTCCCTA+TGG | - | chr8.2:63019716-63019735 | None:intergenic | 25.0% |
| ! | TCAATAGAATAGTCATCAAA+TGG | + | chr8.2:63019649-63019668 | MS.gene051168:intron | 25.0% |
| ! | TTTGCTTCCATATTGAAAAA+GGG | - | chr8.2:63019278-63019297 | None:intergenic | 25.0% |
| !! | TTATAATTTTTATCCACCAC+TGG | + | chr8.2:63020356-63020375 | MS.gene051168:intron | 25.0% |
| !!! | ACTTTTACCCTTTTTCAATA+TGG | + | chr8.2:63019268-63019287 | MS.gene051168:intron | 25.0% |
| !!! | CATATTCTGCTTATTTTAGA+AGG | + | chr8.2:63018552-63018571 | MS.gene051168:intron | 25.0% |
| !!! | TATGTTGCAGTTACTTTTTT+CGG | + | chr8.2:63017950-63017969 | MS.gene051168:intron | 25.0% |
| !!! | TATGTTTTCTACTGATTGTA+TGG | + | chr8.2:63019869-63019888 | MS.gene051168:intron | 25.0% |
| !!! | TTAAATGGAGATATTTTTGG+AGG | + | chr8.2:63017882-63017901 | MS.gene051168:CDS | 25.0% |
| !!! | TTAATTACTTTTCCAACTCT+TGG | + | chr8.2:63019481-63019500 | MS.gene051168:intron | 25.0% |
| AAAGTCTGATCAAGAATTGT+TGG | + | chr8.2:63018011-63018030 | MS.gene051168:intron | 30.0% | |
| AAGAGCAAAAAAGAAGCTTA+TGG | + | chr8.2:63020602-63020621 | MS.gene051168:CDS | 30.0% | |
| AGATTTAGATTCCCTGTATA+TGG | - | chr8.2:63018734-63018753 | None:intergenic | 30.0% | |
| AGTTGATCTCGCAAAATAAT+TGG | - | chr8.2:63018138-63018157 | None:intergenic | 30.0% | |
| ATCCTAGAATTTGTGCATTT+CGG | - | chr8.2:63018709-63018728 | None:intergenic | 30.0% | |
| ATGAAGATAGATCTATCACT+GGG | - | chr8.2:63017364-63017383 | None:intergenic | 30.0% | |
| ATTGCGCATATTTCTTACAT+AGG | + | chr8.2:63019039-63019058 | MS.gene051168:intron | 30.0% | |
| ATTTACATCTCTTATGAAGC+TGG | + | chr8.2:63019108-63019127 | MS.gene051168:CDS | 30.0% | |
| CTTGAAAAATATGGTCAAGT+AGG | + | chr8.2:63019945-63019964 | MS.gene051168:CDS | 30.0% | |
| CTTTCTGTAATCAATCTCAA+GGG | + | chr8.2:63020872-63020891 | MS.gene051168:CDS | 30.0% | |
| CTTTGCTTCCATATTGAAAA+AGG | - | chr8.2:63019279-63019298 | None:intergenic | 30.0% | |
| GAAAAAAAAGACAAGGAATC+AGG | - | chr8.2:63020205-63020224 | None:intergenic | 30.0% | |
| GATGGAAGAAAAAAAAGACA+AGG | - | chr8.2:63020212-63020231 | None:intergenic | 30.0% | |
| GATTTAGATTCCCTGTATAT+GGG | - | chr8.2:63018733-63018752 | None:intergenic | 30.0% | |
| GTCAAACACTTCAATTAGTA+CGG | - | chr8.2:63018444-63018463 | None:intergenic | 30.0% | |
| TAATAGAACTTGGCAAAAGA+GGG | - | chr8.2:63019744-63019763 | None:intergenic | 30.0% | |
| TACACAAGAATCATTCATTC+AGG | - | chr8.2:63018055-63018074 | None:intergenic | 30.0% | |
| TACTAACTTCATGACTAACT+AGG | - | chr8.2:63017992-63018011 | None:intergenic | 30.0% | |
| TATGAAGATAGATCTATCAC+TGG | - | chr8.2:63017365-63017384 | None:intergenic | 30.0% | |
| TATTACCACCTAATAGAACT+TGG | - | chr8.2:63019754-63019773 | None:intergenic | 30.0% | |
| TCAAATAGACATTACGTACT+TGG | + | chr8.2:63018658-63018677 | MS.gene051168:intron | 30.0% | |
| TCAATCTATGAGACATCTAA+GGG | + | chr8.2:63018232-63018251 | MS.gene051168:intron | 30.0% | |
| TGATCGTTTCATTGATATGA+TGG | + | chr8.2:63017508-63017527 | MS.gene051168:CDS | 30.0% | |
| TGTTATTGAAGTGAGAAAAG+TGG | - | chr8.2:63019595-63019614 | None:intergenic | 30.0% | |
| TTCTAACAAGTAAACCATTC+TGG | - | chr8.2:63019415-63019434 | None:intergenic | 30.0% | |
| ! | CTACTTGACCATATTTTTCA+AGG | - | chr8.2:63019947-63019966 | None:intergenic | 30.0% |
| ! | GTGCATTTTTATAACCAGAA+TGG | + | chr8.2:63019398-63019417 | MS.gene051168:intron | 30.0% |
| ! | TATTGCTATTGTTATTGTGC+AGG | + | chr8.2:63018836-63018855 | MS.gene051168:intron | 30.0% |
| ! | TGTTACTTGTCTCAAATAAC+TGG | + | chr8.2:63020298-63020317 | MS.gene051168:intron | 30.0% |
| !! | GTGCATTATTTTGTGTACTA+GGG | + | chr8.2:63019891-63019910 | MS.gene051168:intron | 30.0% |
| !! | TGCAGAAATCTCTAAAGTAA+AGG | + | chr8.2:63019444-63019463 | MS.gene051168:intron | 30.0% |
| !!! | ATTCTGCTTATTTTAGAAGG+TGG | + | chr8.2:63018555-63018574 | MS.gene051168:intron | 30.0% |
| !!! | CTTTTTCAATATGGAAGCAA+AGG | + | chr8.2:63019277-63019296 | MS.gene051168:intron | 30.0% |
| !!! | GAGACTTGTTAATTTTGAAC+TGG | - | chr8.2:63019507-63019526 | None:intergenic | 30.0% |
| !!! | TGTCATTTTGATTAGACAGA+TGG | - | chr8.2:63020230-63020249 | None:intergenic | 30.0% |
| AAAGAAACTATGGATTCCTG+GGG | + | chr8.2:63018903-63018922 | MS.gene051168:CDS | 35.0% | |
| AAAGTAACTGCAACACAAAC+TGG | - | chr8.2:63019307-63019326 | None:intergenic | 35.0% | |
| AAGTAACTGCAACACAAACT+GGG | - | chr8.2:63019306-63019325 | None:intergenic | 35.0% | |
| AATGCAAATGAGATCTCTCT+TGG | - | chr8.2:63017571-63017590 | None:intergenic | 35.0% | |
| AATGCAGATAGAGTGGTTAA+CGG | + | chr8.2:63020507-63020526 | MS.gene051168:intron | 35.0% | |
| AATTGTTGGACGTTGAAATC+AGG | + | chr8.2:63018025-63018044 | MS.gene051168:intron | 35.0% | |
| AGAAAACACACAAAAGGAGT+TGG | - | chr8.2:63020476-63020495 | None:intergenic | 35.0% | |
| AGAGAAAGTGAAAGAAATGC+CGG | + | chr8.2:63017823-63017842 | MS.gene051168:CDS | 35.0% | |
| AGTGAAACGATTAATGAACC+TGG | - | chr8.2:63017595-63017614 | None:intergenic | 35.0% | |
| ATCATACACTAATTAGCGTC+AGG | - | chr8.2:63017698-63017717 | None:intergenic | 35.0% | |
| ATGGAACACAAGTAGAAAAC+TGG | - | chr8.2:63020256-63020275 | None:intergenic | 35.0% | |
| ATGTGAACTGTACAATCAGA+TGG | + | chr8.2:63018682-63018701 | MS.gene051168:intron | 35.0% | |
| CTAATAGAACTTGGCAAAAG+AGG | - | chr8.2:63019745-63019764 | None:intergenic | 35.0% | |
| GAAACGATCATTATCTTCGA+CGG | - | chr8.2:63017498-63017517 | None:intergenic | 35.0% | |
| GAAAGAAACTATGGATTCCT+GGG | + | chr8.2:63018902-63018921 | MS.gene051168:CDS | 35.0% | |
| GATATTGAAATCAAAGCCAG+TGG | - | chr8.2:63020375-63020394 | None:intergenic | 35.0% | |
| GCTTTCTGTAATCAATCTCA+AGG | + | chr8.2:63020871-63020890 | MS.gene051168:CDS | 35.0% | |
| GTCAATCTATGAGACATCTA+AGG | + | chr8.2:63018231-63018250 | MS.gene051168:intron | 35.0% | |
| GTTTCAAAATGCAGATAGAG+TGG | + | chr8.2:63020500-63020519 | MS.gene051168:intron | 35.0% | |
| TAACAGTCGACAGAACTAAA+AGG | - | chr8.2:63020705-63020724 | None:intergenic | 35.0% | |
| TCCAGAATGGAAAGAAACTA+TGG | + | chr8.2:63018893-63018912 | MS.gene051168:CDS | 35.0% | |
| TCCATAGTTTCTTTCCATTC+TGG | - | chr8.2:63018897-63018916 | None:intergenic | 35.0% | |
| TGAATAAGAAGACAACCTAC+TGG | - | chr8.2:63020086-63020105 | None:intergenic | 35.0% | |
| TTGAACATCTGGCTAAGAAA+TGG | + | chr8.2:63020038-63020057 | MS.gene051168:CDS | 35.0% | |
| ! | CTCTTTTGCCAAGTTCTATT+AGG | + | chr8.2:63019743-63019762 | MS.gene051168:intron | 35.0% |
| ! | CTGTCGACTGTTATACTAAT+TGG | + | chr8.2:63020712-63020731 | MS.gene051168:intron | 35.0% |
| ! | TGTTGTTGTTGATGTAGGTT+GGG | + | chr8.2:63017747-63017766 | MS.gene051168:intron | 35.0% |
| ! | TTGTTGTTGTTGATGTAGGT+TGG | + | chr8.2:63017746-63017765 | MS.gene051168:intron | 35.0% |
| ! | TTTCCATTCTGGAAAACCTT+CGG | - | chr8.2:63018886-63018905 | None:intergenic | 35.0% |
| ! | TTTTGCCAAGTTCTATTAGG+TGG | + | chr8.2:63019746-63019765 | MS.gene051168:intron | 35.0% |
| !! | AACCTGAAATTTGGTGTTAG+AGG | - | chr8.2:63017921-63017940 | None:intergenic | 35.0% |
| !! | ACCTGAAATTTGGTGTTAGA+GGG | - | chr8.2:63017920-63017939 | None:intergenic | 35.0% |
| !! | ATTCTAGGATTCCCATATAC+AGG | + | chr8.2:63018719-63018738 | MS.gene051168:intron | 35.0% |
| !! | ATTGAGGGTGTTCAAAAAAG+AGG | + | chr8.2:63018630-63018649 | MS.gene051168:intron | 35.0% |
| !! | GGTGCATTATTTTGTGTACT+AGG | + | chr8.2:63019890-63019909 | MS.gene051168:intron | 35.0% |
| !! | TCACTTTCTAGGATTGTGAT+TGG | - | chr8.2:63018587-63018606 | None:intergenic | 35.0% |
| !! | TTCTAGGATTCCCATATACA+GGG | + | chr8.2:63018720-63018739 | MS.gene051168:intron | 35.0% |
| !! | TTGAGGGTGTTCAAAAAAGA+GGG | + | chr8.2:63018631-63018650 | MS.gene051168:intron | 35.0% |
| !!! | ACATATTTTGACAGCTCTCT+AGG | + | chr8.2:63020424-63020443 | MS.gene051168:intron | 35.0% |
| !!! | ATCTTTTACAAGAAGTGCTC+CGG | - | chr8.2:63017465-63017484 | None:intergenic | 35.0% |
| !!! | TGGAGATATTTTTGGAGGAT+CGG | + | chr8.2:63017887-63017906 | MS.gene051168:CDS | 35.0% |
| ACATATTCTCCTGCACACAT+TGG | - | chr8.2:63020842-63020861 | None:intergenic | 40.0% | |
| AGAGATGTAAATGCGTCCTT+TGG | - | chr8.2:63019100-63019119 | None:intergenic | 40.0% | |
| AGCTGGTCGTTTATTGTACT+AGG | + | chr8.2:63020656-63020675 | MS.gene051168:intron | 40.0% | |
| AGTAACTGCAACACAAACTG+GGG | - | chr8.2:63019305-63019324 | None:intergenic | 40.0% | |
| ATGACTAACTAGGAACCAGA+GGG | - | chr8.2:63017982-63018001 | None:intergenic | 40.0% | |
| ATGCAGATAGAGTGGTTAAC+GGG | + | chr8.2:63020508-63020527 | MS.gene051168:intron | 40.0% | |
| ATTGAAATCAAAGCCAGTGG+TGG | - | chr8.2:63020372-63020391 | None:intergenic | 40.0% | |
| CATGGTAGAAGTAGATTTCC+TGG | + | chr8.2:63020014-63020033 | MS.gene051168:CDS | 40.0% | |
| GAGATCTCATTTGCATTACC+AGG | + | chr8.2:63017574-63017593 | MS.gene051168:CDS | 40.0% | |
| GATTTCCTGGATTGAACATC+TGG | + | chr8.2:63020027-63020046 | MS.gene051168:CDS | 40.0% | |
| GCGCAAATAACTACATGTGA+CGG | - | chr8.2:63020748-63020767 | None:intergenic | 40.0% | |
| GCGCATATTTCTTACATAGG+TGG | + | chr8.2:63019042-63019061 | MS.gene051168:intron | 40.0% | |
| GGAAAGAAACTATGGATTCC+TGG | + | chr8.2:63018901-63018920 | MS.gene051168:CDS | 40.0% | |
| GGGAGTGACCTTGAAAAATA+TGG | + | chr8.2:63019936-63019955 | MS.gene051168:CDS | 40.0% | |
| GGTTGTCTTCTTATTCAGAC+AGG | + | chr8.2:63020089-63020108 | MS.gene051168:CDS | 40.0% | |
| GTCCGAAATGCACAAATTCT+AGG | + | chr8.2:63018704-63018723 | MS.gene051168:intron | 40.0% | |
| TACATAGGTGGTTGCTGAAA+TGG | + | chr8.2:63019054-63019073 | MS.gene051168:intron | 40.0% | |
| TCCCTCTAACACCAAATTTC+AGG | + | chr8.2:63017916-63017935 | MS.gene051168:CDS | 40.0% | |
| TCTTATTCAGACAGGAAAGC+AGG | + | chr8.2:63020097-63020116 | MS.gene051168:CDS | 40.0% | |
| TCTTCATCCACCAAACTTCT+CGG | - | chr8.2:63017797-63017816 | None:intergenic | 40.0% | |
| TGGACAAAAAGTCGAAGTGA+AGG | + | chr8.2:63020058-63020077 | MS.gene051168:CDS | 40.0% | |
| TTGCTGAAATGGCAGCTATT+GGG | + | chr8.2:63019065-63019084 | MS.gene051168:CDS | 40.0% | |
| ! | ATTTTGAACTGGCCAAGAGT+TGG | - | chr8.2:63019496-63019515 | None:intergenic | 40.0% |
| ! | CATTTAAGATCAGCACCAAC+AGG | - | chr8.2:63017869-63017888 | None:intergenic | 40.0% |
| ! | GCTGTTGTTGTTGTTGATGT+AGG | + | chr8.2:63017742-63017761 | MS.gene051168:intron | 40.0% |
| ! | GTTGTTGTTGATGTAGGTTG+GGG | + | chr8.2:63017748-63017767 | MS.gene051168:intron | 40.0% |
| ! | TATTGGGTTTGGTCTTCCAA+AGG | + | chr8.2:63019081-63019100 | MS.gene051168:CDS | 40.0% |
| ! | TGCTATCATTTTGTATCCCC+AGG | - | chr8.2:63018922-63018941 | None:intergenic | 40.0% |
| ! | TTCCATTCTGGAAAACCTTC+GGG | - | chr8.2:63018885-63018904 | None:intergenic | 40.0% |
| !! | AGCTGCATTGATTGCATCAA+TGG | - | chr8.2:63020581-63020600 | None:intergenic | 40.0% |
| !! | CTGTTGGTGCTGATCTTAAA+TGG | + | chr8.2:63017867-63017886 | MS.gene051168:CDS | 40.0% |
| !!! | CAAGTAGGAACTGTTTTTGC+AGG | + | chr8.2:63019960-63019979 | MS.gene051168:CDS | 40.0% |
| !!! | TTTTTTCGGTGTTAACCCTC+TGG | + | chr8.2:63017964-63017983 | MS.gene051168:intron | 40.0% |
| AAATACCCTCCAATGTGTGC+AGG | + | chr8.2:63020830-63020849 | MS.gene051168:CDS | 45.0% | |
| AAGTGCTCCGGTTTCACTTA+AGG | - | chr8.2:63017453-63017472 | None:intergenic | 45.0% | |
| ACGAAGTAGTTGCCACAAAC+AGG | + | chr8.2:63020554-63020573 | MS.gene051168:CDS | 45.0% | |
| AGATAGAGTGGTTAACGGGA+GGG | + | chr8.2:63020512-63020531 | MS.gene051168:intron | 45.0% | |
| ATTCTCCTGCACACATTGGA+GGG | - | chr8.2:63020838-63020857 | None:intergenic | 45.0% | |
| CATGACTAACTAGGAACCAG+AGG | - | chr8.2:63017983-63018002 | None:intergenic | 45.0% | |
| CTTAGCCAGATGTTCAATCC+AGG | - | chr8.2:63020035-63020054 | None:intergenic | 45.0% | |
| CTTGCAGTCTCAACTCTCAA+AGG | - | chr8.2:63020401-63020420 | None:intergenic | 45.0% | |
| GAAATGGCAGCTATTGGGTT+TGG | + | chr8.2:63019070-63019089 | MS.gene051168:CDS | 45.0% | |
| GATTCGGCAAAATGTCCCAA+GGG | - | chr8.2:63020797-63020816 | None:intergenic | 45.0% | |
| GGAAAACCTTCGGGAATTAC+TGG | - | chr8.2:63018876-63018895 | None:intergenic | 45.0% | |
| GTATGAGGTCGATGTTCTTC+CGG | - | chr8.2:63017845-63017864 | None:intergenic | 45.0% | |
| GTTGCTGAAATGGCAGCTAT+TGG | + | chr8.2:63019064-63019083 | MS.gene051168:CDS | 45.0% | |
| TATTCTCCTGCACACATTGG+AGG | - | chr8.2:63020839-63020858 | None:intergenic | 45.0% | |
| TGCATCAATGGTCCTGTTTG+TGG | - | chr8.2:63020569-63020588 | None:intergenic | 45.0% | |
| TGGATCGCGGTCGTTTAAAA+CGG | - | chr8.2:63017396-63017415 | None:intergenic | 45.0% | |
| TGGCGAATCTTGAACTCATG+AGG | - | chr8.2:63017551-63017570 | None:intergenic | 45.0% | |
| ! | TTCCCGAAGGTTTTCCAGAA+TGG | + | chr8.2:63018880-63018899 | MS.gene051168:CDS | 45.0% |
| !! | AGTGGAAGTACCGAGAAGTT+TGG | + | chr8.2:63017784-63017803 | MS.gene051168:CDS | 45.0% |
| !! | TTTTCAAGGTCACTCCCTGT+TGG | - | chr8.2:63019933-63019952 | None:intergenic | 45.0% |
| AAAGTGGCACCAAATGCTCG+AGG | - | chr8.2:63019579-63019598 | None:intergenic | 50.0% | |
| AAGTGGCACCAAATGCTCGA+GGG | - | chr8.2:63019578-63019597 | None:intergenic | 50.0% | |
| ACTTAAGGTGCGGCTGACAT+CGG | - | chr8.2:63017438-63017457 | None:intergenic | 50.0% | |
| AGCCGCACCTTAAGTGAAAC+CGG | + | chr8.2:63017443-63017462 | MS.gene051168:CDS | 50.0% | |
| CAGATAGAGTGGTTAACGGG+AGG | + | chr8.2:63020511-63020530 | MS.gene051168:intron | 50.0% | |
| CATCGACCTCATACTCCTGT+TGG | + | chr8.2:63017851-63017870 | MS.gene051168:CDS | 50.0% | |
| CTCCGGTTTCACTTAAGGTG+CGG | - | chr8.2:63017448-63017467 | None:intergenic | 50.0% | |
| CTTATGGAGAGTCTCGTCGA+CGG | + | chr8.2:63020618-63020637 | MS.gene051168:CDS | 50.0% | |
| GATAGAGTGGTTAACGGGAG+GGG | + | chr8.2:63020513-63020532 | MS.gene051168:intron | 50.0% | |
| GGTGAGTGCTCACAAAAAGC+TGG | + | chr8.2:63020639-63020658 | MS.gene051168:intron | 50.0% | |
| GTCGAAGTGAAGGTTCCAGT+AGG | + | chr8.2:63020068-63020087 | MS.gene051168:CDS | 50.0% | |
| TGCACGAGTCTCACTCTTGT+TGG | - | chr8.2:63019383-63019402 | None:intergenic | 50.0% | |
| TGCGCACATAGCATCAGATG+CGG | + | chr8.2:63020763-63020782 | MS.gene051168:CDS | 50.0% | |
| TTATCTTCGACGGTGCATCG+CGG | - | chr8.2:63017488-63017507 | None:intergenic | 50.0% | |
| TTTGCTTGCCAGTGGCGATT+CGG | - | chr8.2:63020813-63020832 | None:intergenic | 50.0% | |
| ! | ACATTTTGCCGAATCGCCAC+TGG | + | chr8.2:63020802-63020821 | MS.gene051168:CDS | 50.0% |
| ! | ATCGCGGTCGTTTAAAACGG+CGG | - | chr8.2:63017393-63017412 | None:intergenic | 50.0% |
| ! | CGATTCGGCAAAATGTCCCA+AGG | - | chr8.2:63020798-63020817 | None:intergenic | 50.0% |
| ! | TCAGCACCAACAGGAGTATG+AGG | - | chr8.2:63017860-63017879 | None:intergenic | 50.0% |
| !! | GGAAGTACCGAGAAGTTTGG+TGG | + | chr8.2:63017787-63017806 | MS.gene051168:CDS | 50.0% |
| CCTGTTGGAGCTAGCAGATG+CGG | - | chr8.2:63019918-63019937 | None:intergenic | 55.0% | |
| CGCATCTGCTAGCTCCAACA+GGG | + | chr8.2:63019916-63019935 | MS.gene051168:CDS | 55.0% | |
| CTCGGTACTTCCACTCTCTC+CGG | - | chr8.2:63017779-63017798 | None:intergenic | 55.0% | |
| CTGTTGGAGCTAGCAGATGC+GGG | - | chr8.2:63019917-63019936 | None:intergenic | 55.0% | |
| GCAGAGCCAGTAATTCCCGA+AGG | + | chr8.2:63018867-63018886 | MS.gene051168:CDS | 55.0% | |
| TGTTGGGACCCTCGAGCATT+TGG | + | chr8.2:63019567-63019586 | MS.gene051168:intron | 55.0% | |
| ! | GATGTAGGTTGGGGTTACGC+CGG | + | chr8.2:63017757-63017776 | MS.gene051168:intron | 55.0% |
| ! | GGTCGTTTAAAACGGCGGAG+AGG | - | chr8.2:63017388-63017407 | None:intergenic | 55.0% |
| !! | AGATGCGGTTCTGAAGCCCT+TGG | + | chr8.2:63020778-63020797 | MS.gene051168:CDS | 55.0% |
| !! | GATGCGGTTCTGAAGCCCTT+GGG | + | chr8.2:63020779-63020798 | MS.gene051168:CDS | 55.0% |
| !! | GGAGGGTATTTGCTTGCCAG+TGG | - | chr8.2:63020821-63020840 | None:intergenic | 55.0% |
| CCGCATCTGCTAGCTCCAAC+AGG | + | chr8.2:63019915-63019934 | MS.gene051168:CDS | 60.0% | |
| TGACATCGGCGCAGAGGGAT+TGG | - | chr8.2:63017424-63017443 | None:intergenic | 60.0% | |
| ACGGGAGGGGACTGCATAGC+TGG | + | chr8.2:63020526-63020545 | MS.gene051168:CDS | 65.0% | |
| CATCGGCGCAGAGGGATTGG+AGG | - | chr8.2:63017421-63017440 | None:intergenic | 65.0% | |
| TGGGGTTACGCCGGAGAGAG+TGG | + | chr8.2:63017766-63017785 | MS.gene051168:CDS | 65.0% | |
| ! | GGGATTGGAGGCGTGGATCG+CGG | - | chr8.2:63017409-63017428 | None:intergenic | 65.0% |
| GCGCAGAGGGATTGGAGGCG+TGG | - | chr8.2:63017416-63017435 | None:intergenic | 70.0% | |
| GCGGCTGACATCGGCGCAGA+GGG | - | chr8.2:63017429-63017448 | None:intergenic | 70.0% | |
| TGCGGCTGACATCGGCGCAG+AGG | - | chr8.2:63017430-63017449 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 63017353 | 63020904 | 63017353 | ID=MS.gene051168 |
| chr8.2 | mRNA | 63017353 | 63020904 | 63017353 | ID=MS.gene051168.t1;Parent=MS.gene051168 |
| chr8.2 | exon | 63017353 | 63017595 | 63017353 | ID=MS.gene051168.t1.exon1;Parent=MS.gene051168.t1 |
| chr8.2 | CDS | 63017353 | 63017595 | 63017353 | ID=cds.MS.gene051168.t1;Parent=MS.gene051168.t1 |
| chr8.2 | exon | 63017764 | 63017937 | 63017764 | ID=MS.gene051168.t1.exon2;Parent=MS.gene051168.t1 |
| chr8.2 | CDS | 63017764 | 63017937 | 63017764 | ID=cds.MS.gene051168.t1;Parent=MS.gene051168.t1 |
| chr8.2 | exon | 63018858 | 63018950 | 63018858 | ID=MS.gene051168.t1.exon3;Parent=MS.gene051168.t1 |
| chr8.2 | CDS | 63018858 | 63018950 | 63018858 | ID=cds.MS.gene051168.t1;Parent=MS.gene051168.t1 |
| chr8.2 | exon | 63019061 | 63019129 | 63019061 | ID=MS.gene051168.t1.exon4;Parent=MS.gene051168.t1 |
| chr8.2 | CDS | 63019061 | 63019129 | 63019061 | ID=cds.MS.gene051168.t1;Parent=MS.gene051168.t1 |
| chr8.2 | exon | 63019912 | 63020118 | 63019912 | ID=MS.gene051168.t1.exon5;Parent=MS.gene051168.t1 |
| chr8.2 | CDS | 63019912 | 63020118 | 63019912 | ID=cds.MS.gene051168.t1;Parent=MS.gene051168.t1 |
| chr8.2 | exon | 63020514 | 63020639 | 63020514 | ID=MS.gene051168.t1.exon6;Parent=MS.gene051168.t1 |
| chr8.2 | CDS | 63020514 | 63020639 | 63020514 | ID=cds.MS.gene051168.t1;Parent=MS.gene051168.t1 |
| chr8.2 | exon | 63020758 | 63020904 | 63020758 | ID=MS.gene051168.t1.exon7;Parent=MS.gene051168.t1 |
| chr8.2 | CDS | 63020758 | 63020904 | 63020758 | ID=cds.MS.gene051168.t1;Parent=MS.gene051168.t1 |
| Gene Sequence |
| Protein sequence |
