Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23677.t1 | KEH19047.1 | 98.6 | 352 | 5 | 0 | 1 | 352 | 1 | 352 | 1.10E-202 | 715.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23677.t1 | A0A072TNR2 | 98.6 | 352 | 5 | 0 | 1 | 352 | 1 | 352 | 7.7e-203 | 715.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051168 | MS.gene23677 | 0.934838 | 2.17E-96 | -1.69E-46 |
| MS.gene057320 | MS.gene23677 | 0.834935 | 2.25E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23677.t1 | MTR_8g036165 | 98.580 | 352 | 5 | 0 | 1 | 352 | 1 | 352 | 0.0 | 724 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23677.t1 | AT5G48020 | 76.989 | 352 | 81 | 0 | 1 | 352 | 1 | 352 | 0.0 | 568 |
Find 87 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCTCTAACACCAAATTTC+AGG | 0.195500 | 8.1:+66954096 | MS.gene23677:CDS |
| TCCATAGTTTCTTTCCATTC+TGG | 0.228050 | 8.1:-66955072 | None:intergenic |
| GGAAAACCTTCGGGAATTAC+TGG | 0.268952 | 8.1:-66955051 | None:intergenic |
| CTGTTGGTGCTGATCTTAAA+TGG | 0.294521 | 8.1:+66954047 | MS.gene23677:CDS |
| CTTAACTTTCTAACAATTCA+TGG | 0.312683 | 8.1:+66956178 | MS.gene23677:CDS |
| CATGGTAGAAGTAGATTTCC+TGG | 0.325103 | 8.1:+66956196 | MS.gene23677:CDS |
| TTCCATTCTGGAAAACCTTC+GGG | 0.337961 | 8.1:-66955060 | None:intergenic |
| AGCTGCATTGATTGCATCAA+TGG | 0.338784 | 8.1:-66956760 | None:intergenic |
| TACATAGGTGGTTGCTGAAA+TGG | 0.348701 | 8.1:+66955236 | MS.gene23677:intron |
| GTTGCTGAAATGGCAGCTAT+TGG | 0.355888 | 8.1:+66955246 | MS.gene23677:CDS |
| AAGTGCTCCGGTTTCACTTA+AGG | 0.356592 | 8.1:-66953627 | None:intergenic |
| GGAAAGAAACTATGGATTCC+TGG | 0.357071 | 8.1:+66955079 | MS.gene23677:CDS |
| TCCAGAATGGAAAGAAACTA+TGG | 0.362810 | 8.1:+66955071 | MS.gene23677:CDS |
| CCGCATCTGCTAGCTCCAAC+AGG | 0.366336 | 8.1:+66956097 | MS.gene23677:CDS |
| AACCTGAAATTTGGTGTTAG+AGG | 0.373948 | 8.1:-66954098 | None:intergenic |
| TTTCCATTCTGGAAAACCTT+CGG | 0.382603 | 8.1:-66955061 | None:intergenic |
| GATTTCCTGGATTGAACATC+TGG | 0.385430 | 8.1:+66956209 | MS.gene23677:CDS |
| TCTTCATCCACCAAACTTCT+CGG | 0.398610 | 8.1:-66953974 | None:intergenic |
| GTATGAGGTCGATGTTCTTC+CGG | 0.410370 | 8.1:-66954022 | None:intergenic |
| TGATCGTTTCATTGATATGA+TGG | 0.415697 | 8.1:+66953685 | MS.gene23677:CDS |
| GAAATGGCAGCTATTGGGTT+TGG | 0.417350 | 8.1:+66955252 | MS.gene23677:CDS |
| TTGAACATCTGGCTAAGAAA+TGG | 0.428381 | 8.1:+66956220 | MS.gene23677:CDS |
| AGAGATGTAAATGCGTCCTT+TGG | 0.431382 | 8.1:-66955279 | None:intergenic |
| TTTGCTTGCCAGTGGCGATT+CGG | 0.436293 | 8.1:-66956992 | None:intergenic |
| TTGCTGAAATGGCAGCTATT+GGG | 0.439102 | 8.1:+66955247 | MS.gene23677:CDS |
| AGTGGAAGTACCGAGAAGTT+TGG | 0.442306 | 8.1:+66953964 | MS.gene23677:CDS |
| ACGAAGTAGTTGCCACAAAC+AGG | 0.452864 | 8.1:+66956736 | MS.gene23677:CDS |
| GAAAGAAACTATGGATTCCT+GGG | 0.462274 | 8.1:+66955080 | MS.gene23677:CDS |
| ACGGGAGGGGACTGCATAGC+TGG | 0.474833 | 8.1:+66956708 | MS.gene23677:CDS |
| AGCCGCACCTTAAGTGAAAC+CGG | 0.475604 | 8.1:+66953620 | MS.gene23677:CDS |
| CATTTAAGATCAGCACCAAC+AGG | 0.478310 | 8.1:-66954046 | None:intergenic |
| GATAGAGTGGTTAACGGGAG+GGG | 0.481108 | 8.1:+66956695 | MS.gene23677:intron |
| ATTTACATCTCTTATGAAGC+TGG | 0.483911 | 8.1:+66955290 | MS.gene23677:CDS |
| GGTTGTCTTCTTATTCAGAC+AGG | 0.484812 | 8.1:+66956271 | MS.gene23677:CDS |
| ATGCAGATAGAGTGGTTAAC+GGG | 0.491844 | 8.1:+66956690 | MS.gene23677:intron |
| TGCATCAATGGTCCTGTTTG+TGG | 0.493169 | 8.1:-66956748 | None:intergenic |
| CTTAGCCAGATGTTCAATCC+AGG | 0.494189 | 8.1:-66956214 | None:intergenic |
| GAGACCTCATTTGCATTACC+AGG | 0.498364 | 8.1:+66953751 | MS.gene23677:CDS |
| ACTTAAGGTGCGGCTGACAT+CGG | 0.510359 | 8.1:-66953612 | None:intergenic |
| CCTGTTGGAGCTAGCAGATG+CGG | 0.513776 | 8.1:-66956097 | None:intergenic |
| CTGTTGGAGCTAGCAGATGC+GGG | 0.518133 | 8.1:-66956096 | None:intergenic |
| AATGCAAATGAGGTCTCTCT+TGG | 0.518231 | 8.1:-66953745 | None:intergenic |
| TGAATAAGAAGACAACCTAC+TGG | 0.518320 | 8.1:-66956265 | None:intergenic |
| GATGCGGTTCTGAAGCCCTT+GGG | 0.519746 | 8.1:+66956961 | MS.gene23677:CDS |
| TGGATCGCGGTCGTTTGAAA+CGG | 0.520488 | 8.1:-66953570 | None:intergenic |
| AATGCAGATAGAGTGGTTAA+CGG | 0.526453 | 8.1:+66956689 | MS.gene23677:intron |
| TCTTATTCAGACAGGAAAGC+AGG | 0.527797 | 8.1:+66956279 | MS.gene23677:CDS |
| TATGAAGATAGATCTATCAC+TGG | 0.532690 | 8.1:-66953539 | None:intergenic |
| TATTCTCCTGCACACATTGG+AGG | 0.534371 | 8.1:-66957018 | None:intergenic |
| TGAACCTGGTAATGCAAATG+AGG | 0.539384 | 8.1:-66953755 | None:intergenic |
| GCTTTCTGTAATCAATCTCA+AGG | 0.543658 | 8.1:+66957053 | MS.gene23677:CDS |
| ACCTGAAATTTGGTGTTAGA+GGG | 0.544097 | 8.1:-66954097 | None:intergenic |
| AAATACCCTCCAATGTGTGC+AGG | 0.553860 | 8.1:+66957012 | MS.gene23677:CDS |
| TGGGGTTACGCCGGAGAGAG+TGG | 0.554888 | 8.1:+66953946 | MS.gene23677:CDS |
| AGATGCGGTTCTGAAGCCCT+TGG | 0.555896 | 8.1:+66956960 | MS.gene23677:CDS |
| CATCGGCGCAGAGAGATTGA+AGG | 0.556433 | 8.1:-66953595 | None:intergenic |
| ACATATTCTCCTGCACACAT+TGG | 0.557119 | 8.1:-66957021 | None:intergenic |
| GGAAGTACCGAGAAGTTTGG+TGG | 0.563059 | 8.1:+66953967 | MS.gene23677:CDS |
| GGAGGGTATTTGCTTGCCAG+TGG | 0.565381 | 8.1:-66957000 | None:intergenic |
| CTCGGTACTTCCACTCTCTC+CGG | 0.569660 | 8.1:-66953956 | None:intergenic |
| GTTTCAAAATGCAGATAGAG+TGG | 0.571025 | 8.1:+66956682 | MS.gene23677:intron |
| AGAGAAAGTGAAAGAAATGC+CGG | 0.573901 | 8.1:+66954003 | MS.gene23677:CDS |
| TATTGGGTTTGGTCTTCCAA+AGG | 0.574185 | 8.1:+66955263 | MS.gene23677:CDS |
| TCAGCACCAACAGGAGTATG+AGG | 0.576196 | 8.1:-66954037 | None:intergenic |
| CATCGACCTCATACTCCTGT+TGG | 0.579196 | 8.1:+66954031 | MS.gene23677:CDS |
| CGCATCTGCTAGCTCCAACA+GGG | 0.584453 | 8.1:+66956098 | MS.gene23677:CDS |
| ATTCTCCTGCACACATTGGA+GGG | 0.595895 | 8.1:-66957017 | None:intergenic |
| GATGTAGGTTGGGGTTACGC+CGG | 0.596438 | 8.1:+66953937 | MS.gene23677:intron |
| GCGCAGAGAGATTGAAGGCG+TGG | 0.597113 | 8.1:-66953590 | None:intergenic |
| AGATAGAGTGGTTAACGGGA+GGG | 0.600235 | 8.1:+66956694 | MS.gene23677:intron |
| CGATTCGGCAAAATGTCCCA+AGG | 0.600431 | 8.1:-66956977 | None:intergenic |
| TGGCGAATCTTGAACTCATG+AGG | 0.601736 | 8.1:-66953725 | None:intergenic |
| CTCCGGTTTCACTTAAGGTG+CGG | 0.607440 | 8.1:-66953622 | None:intergenic |
| GAGATTGAAGGCGTGGATCG+CGG | 0.622964 | 8.1:-66953583 | None:intergenic |
| CAGATAGAGTGGTTAACGGG+AGG | 0.624676 | 8.1:+66956693 | MS.gene23677:intron |
| ATCGCGGTCGTTTGAAACGG+CGG | 0.626601 | 8.1:-66953567 | None:intergenic |
| CTTTCTGTAATCAATCTCAA+GGG | 0.642636 | 8.1:+66957054 | MS.gene23677:CDS |
| CTTATGGAGAGTCTCGTCGA+CGG | 0.649611 | 8.1:+66956800 | MS.gene23677:CDS |
| TGCGCACATAGCATCAGATG+CGG | 0.662623 | 8.1:+66956945 | MS.gene23677:CDS |
| GCAGAGCCAGTAATTCCCGA+AGG | 0.666440 | 8.1:+66955045 | MS.gene23677:CDS |
| GGTCGTTTGAAACGGCGGAG+AGG | 0.666648 | 8.1:-66953562 | None:intergenic |
| ATGAAGATAGATCTATCACT+GGG | 0.672660 | 8.1:-66953538 | None:intergenic |
| GAAACGATCATTATCTTCGA+CGG | 0.676141 | 8.1:-66953672 | None:intergenic |
| GATTCGGCAAAATGTCCCAA+GGG | 0.677886 | 8.1:-66956976 | None:intergenic |
| AAAGAAACTATGGATTCCTG+GGG | 0.696839 | 8.1:+66955081 | MS.gene23677:CDS |
| GTCGAAGTGAAGGTTCCAGT+AGG | 0.704557 | 8.1:+66956250 | MS.gene23677:CDS |
| TTATCTTCGACGGTGCATCG+CGG | 0.747943 | 8.1:-66953662 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATCAATACTTTAACAA+TGG | + | chr8.1:66954389-66954408 | MS.gene23677:intron | 15.0% |
| !! | AAATGTAAAAGTAAAGAATA+GGG | - | chr8.1:66955863-66955882 | None:intergenic | 15.0% |
| !! | TAAATGTAAAAGTAAAGAAT+AGG | - | chr8.1:66955864-66955883 | None:intergenic | 15.0% |
| !! | TGCTATTGTTTATAATTATA+AGG | + | chr8.1:66954528-66954547 | MS.gene23677:intron | 15.0% |
| !!! | TATGTTAAAACAAAAGATTT+TGG | + | chr8.1:66955398-66955417 | MS.gene23677:intron | 15.0% |
| !!! | TTATTTTACAAAAAGTCATT+AGG | + | chr8.1:66954673-66954692 | MS.gene23677:intron | 15.0% |
| !!! | TTTTTATTTTATCACTTTCT+AGG | - | chr8.1:66954776-66954795 | None:intergenic | 15.0% |
| !! | AAAAAAAGAAACCTGAAATT+TGG | - | chr8.1:66954110-66954129 | None:intergenic | 20.0% |
| !! | AAACATAGGTAAAAATATCA+AGG | - | chr8.1:66956038-66956057 | None:intergenic | 20.0% |
| !! | AACATAGGTAAAAATATCAA+GGG | - | chr8.1:66956037-66956056 | None:intergenic | 20.0% |
| !! | AAGTAAGTCATATAATTGAT+TGG | + | chr8.1:66955127-66955146 | MS.gene23677:intron | 20.0% |
| !! | ACAAATATAATGTTAAACAG+TGG | - | chr8.1:66955540-66955559 | None:intergenic | 20.0% |
| !! | ATTTATTTATGTTTGTCCAT+AGG | + | chr8.1:66955879-66955898 | MS.gene23677:intron | 20.0% |
| !! | GATACAATATCTTCAAATAT+AGG | - | chr8.1:66956318-66956337 | None:intergenic | 20.0% |
| !! | TTTATTTATGTTTGTCCATA+GGG | + | chr8.1:66955880-66955899 | MS.gene23677:intron | 20.0% |
| !!! | AATAGTACAGTTTTTTTGAA+TGG | - | chr8.1:66954597-66954616 | None:intergenic | 20.0% |
| !!! | ATCTTAAATGGAGATATTTT+TGG | + | chr8.1:66954059-66954078 | MS.gene23677:CDS | 20.0% |
| !!! | CAACTTGTTTAAAAAATGTT+GGG | + | chr8.1:66955733-66955752 | MS.gene23677:intron | 20.0% |
| !!! | GTTTAAGATAAAAGAAAATG+TGG | + | chr8.1:66954442-66954461 | MS.gene23677:intron | 20.0% |
| !!! | TCAACTTGTTTAAAAAATGT+TGG | + | chr8.1:66955732-66955751 | MS.gene23677:intron | 20.0% |
| !!! | TTTTTGTATTCTCTCATTTA+CGG | + | chr8.1:66954553-66954572 | MS.gene23677:intron | 20.0% |
| ! | AAAATTAGTCGAAAACATTG+AGG | + | chr8.1:66954792-66954811 | MS.gene23677:intron | 25.0% |
| ! | AAATTAGTCGAAAACATTGA+GGG | + | chr8.1:66954793-66954812 | MS.gene23677:intron | 25.0% |
| ! | ACAAAAAGAAAACACACAAA+AGG | - | chr8.1:66956664-66956683 | None:intergenic | 25.0% |
| ! | ATACAATCAGTAGAAAACAT+AGG | - | chr8.1:66956052-66956071 | None:intergenic | 25.0% |
| ! | CAATAGAATAGTCATCAAAT+GGG | + | chr8.1:66955832-66955851 | MS.gene23677:intron | 25.0% |
| ! | CTAAAAAGTTCAGCAAAAAA+TGG | - | chr8.1:66956457-66956476 | None:intergenic | 25.0% |
| ! | CTTAACTTTCTAACAATTCA+TGG | + | chr8.1:66956178-66956197 | MS.gene23677:CDS | 25.0% |
| ! | TAAAGTAAAATTGTTCCCTA+TGG | - | chr8.1:66955898-66955917 | None:intergenic | 25.0% |
| ! | TCAATAGAATAGTCATCAAA+TGG | + | chr8.1:66955831-66955850 | MS.gene23677:intron | 25.0% |
| ! | TTTGCTTCCATATTGAAAAA+GGG | - | chr8.1:66955460-66955479 | None:intergenic | 25.0% |
| !! | ATGCATTTTTATAACCAGAA+TGG | + | chr8.1:66955580-66955599 | MS.gene23677:intron | 25.0% |
| !! | TTATAATTTTTATCCACCAC+TGG | + | chr8.1:66956538-66956557 | MS.gene23677:intron | 25.0% |
| !!! | ACTTTTACCCTTTTTCAATA+TGG | + | chr8.1:66955450-66955469 | MS.gene23677:intron | 25.0% |
| !!! | CATATTCTGCTTATTTTAGA+AGG | + | chr8.1:66954730-66954749 | MS.gene23677:intron | 25.0% |
| !!! | TATGTTGCAGTTACTTTTTT+CGG | + | chr8.1:66954130-66954149 | MS.gene23677:intron | 25.0% |
| !!! | TATGTTTTCTACTGATTGTA+TGG | + | chr8.1:66956051-66956070 | MS.gene23677:intron | 25.0% |
| !!! | TTAAATGGAGATATTTTTGG+AGG | + | chr8.1:66954062-66954081 | MS.gene23677:CDS | 25.0% |
| !!! | TTAATTACTTTTCCAACTCT+TGG | + | chr8.1:66955663-66955682 | MS.gene23677:intron | 25.0% |
| AAAGTCTGATCAAGAATTGT+TGG | + | chr8.1:66954191-66954210 | MS.gene23677:intron | 30.0% | |
| AAGAGCAAAAAAGAAGCTTA+TGG | + | chr8.1:66956784-66956803 | MS.gene23677:CDS | 30.0% | |
| AGATTTAGATTCCCTGTATA+TGG | - | chr8.1:66954912-66954931 | None:intergenic | 30.0% | |
| AGTTGATCTCGCAAAATAAT+TGG | - | chr8.1:66954318-66954337 | None:intergenic | 30.0% | |
| ATCCTAGAATTTGTGCATTT+CGG | - | chr8.1:66954887-66954906 | None:intergenic | 30.0% | |
| ATGAAGATAGATCTATCACT+GGG | - | chr8.1:66953541-66953560 | None:intergenic | 30.0% | |
| ATTGCGCATATTTCTTACAT+AGG | + | chr8.1:66955221-66955240 | MS.gene23677:intron | 30.0% | |
| ATTTACATCTCTTATGAAGC+TGG | + | chr8.1:66955290-66955309 | MS.gene23677:CDS | 30.0% | |
| CTTGAAAAATATGGTCAAGT+AGG | + | chr8.1:66956127-66956146 | MS.gene23677:CDS | 30.0% | |
| CTTTCTGTAATCAATCTCAA+GGG | + | chr8.1:66957054-66957073 | MS.gene23677:CDS | 30.0% | |
| CTTTGCTTCCATATTGAAAA+AGG | - | chr8.1:66955461-66955480 | None:intergenic | 30.0% | |
| GAAAAAAAAGACAAGGAATC+AGG | - | chr8.1:66956387-66956406 | None:intergenic | 30.0% | |
| GATGGAAGAAAAAAAAGACA+AGG | - | chr8.1:66956394-66956413 | None:intergenic | 30.0% | |
| GATTTAGATTCCCTGTATAT+GGG | - | chr8.1:66954911-66954930 | None:intergenic | 30.0% | |
| GTCAAACACTTCAATTAGTA+CGG | - | chr8.1:66954622-66954641 | None:intergenic | 30.0% | |
| TAATAGAACTTGGCAAAAGA+GGG | - | chr8.1:66955926-66955945 | None:intergenic | 30.0% | |
| TACACAAGAATCATTCATTC+AGG | - | chr8.1:66954235-66954254 | None:intergenic | 30.0% | |
| TACTAACTTCATGACTAACT+AGG | - | chr8.1:66954172-66954191 | None:intergenic | 30.0% | |
| TATGAAGATAGATCTATCAC+TGG | - | chr8.1:66953542-66953561 | None:intergenic | 30.0% | |
| TATTACCACCTAATAGAACT+TGG | - | chr8.1:66955936-66955955 | None:intergenic | 30.0% | |
| TCAAATAGACATTACGTACT+TGG | + | chr8.1:66954836-66954855 | MS.gene23677:intron | 30.0% | |
| TCAATCTATGAGACATCTAA+GGG | + | chr8.1:66954412-66954431 | MS.gene23677:intron | 30.0% | |
| TGATCGTTTCATTGATATGA+TGG | + | chr8.1:66953685-66953704 | MS.gene23677:CDS | 30.0% | |
| TGTTATTGAAGTGAGAAAAG+TGG | - | chr8.1:66955777-66955796 | None:intergenic | 30.0% | |
| TTCTAACAAGTAAACCATTC+TGG | - | chr8.1:66955597-66955616 | None:intergenic | 30.0% | |
| ! | CTACTTGACCATATTTTTCA+AGG | - | chr8.1:66956129-66956148 | None:intergenic | 30.0% |
| ! | TATTGCTATTGTTATTGTGC+AGG | + | chr8.1:66955014-66955033 | MS.gene23677:intron | 30.0% |
| ! | TGTTACTTGTCTCAAATAAC+TGG | + | chr8.1:66956480-66956499 | MS.gene23677:intron | 30.0% |
| !! | GTGCATTATTTTGTGTACTA+GGG | + | chr8.1:66956073-66956092 | MS.gene23677:intron | 30.0% |
| !! | TGCAGAAATCTCTAAAGTAA+AGG | + | chr8.1:66955626-66955645 | MS.gene23677:intron | 30.0% |
| !!! | ATTCTGCTTATTTTAGAAGG+TGG | + | chr8.1:66954733-66954752 | MS.gene23677:intron | 30.0% |
| !!! | CTTTTTCAATATGGAAGCAA+AGG | + | chr8.1:66955459-66955478 | MS.gene23677:intron | 30.0% |
| !!! | GAGACTTGTTAATTTTGAAC+TGG | - | chr8.1:66955689-66955708 | None:intergenic | 30.0% |
| !!! | TGTCATTTTGATTAGACAGA+TGG | - | chr8.1:66956412-66956431 | None:intergenic | 30.0% |
| AAAGAAACTATGGATTCCTG+GGG | + | chr8.1:66955081-66955100 | MS.gene23677:CDS | 35.0% | |
| AAAGTAACTGCAACACAAAC+TGG | - | chr8.1:66955489-66955508 | None:intergenic | 35.0% | |
| AAGTAACTGCAACACAAACT+GGG | - | chr8.1:66955488-66955507 | None:intergenic | 35.0% | |
| AATGCAGATAGAGTGGTTAA+CGG | + | chr8.1:66956689-66956708 | MS.gene23677:intron | 35.0% | |
| AATTGTTGGACGTTGAAATC+AGG | + | chr8.1:66954205-66954224 | MS.gene23677:intron | 35.0% | |
| AGAAAACACACAAAAGGAGT+TGG | - | chr8.1:66956658-66956677 | None:intergenic | 35.0% | |
| AGAGAAAGTGAAAGAAATGC+CGG | + | chr8.1:66954003-66954022 | MS.gene23677:CDS | 35.0% | |
| AGTGAAACGATTAATGAACC+TGG | - | chr8.1:66953772-66953791 | None:intergenic | 35.0% | |
| ATCATACACTAATTAGCGTC+AGG | - | chr8.1:66953875-66953894 | None:intergenic | 35.0% | |
| ATGGAACACAAGTAGAAAAC+TGG | - | chr8.1:66956438-66956457 | None:intergenic | 35.0% | |
| ATGTGAACTGTACAATCAGA+TGG | + | chr8.1:66954860-66954879 | MS.gene23677:intron | 35.0% | |
| CTAATAGAACTTGGCAAAAG+AGG | - | chr8.1:66955927-66955946 | None:intergenic | 35.0% | |
| GAAACGATCATTATCTTCGA+CGG | - | chr8.1:66953675-66953694 | None:intergenic | 35.0% | |
| GAAAGAAACTATGGATTCCT+GGG | + | chr8.1:66955080-66955099 | MS.gene23677:CDS | 35.0% | |
| GATATTGAAATCAAAGCCAG+TGG | - | chr8.1:66956557-66956576 | None:intergenic | 35.0% | |
| GCTTTCTGTAATCAATCTCA+AGG | + | chr8.1:66957053-66957072 | MS.gene23677:CDS | 35.0% | |
| GTCAATCTATGAGACATCTA+AGG | + | chr8.1:66954411-66954430 | MS.gene23677:intron | 35.0% | |
| GTTTCAAAATGCAGATAGAG+TGG | + | chr8.1:66956682-66956701 | MS.gene23677:intron | 35.0% | |
| TAACAGTCGACAGAACTAAA+AGG | - | chr8.1:66956887-66956906 | None:intergenic | 35.0% | |
| TCCAGAATGGAAAGAAACTA+TGG | + | chr8.1:66955071-66955090 | MS.gene23677:CDS | 35.0% | |
| TCCATAGTTTCTTTCCATTC+TGG | - | chr8.1:66955075-66955094 | None:intergenic | 35.0% | |
| TGAATAAGAAGACAACCTAC+TGG | - | chr8.1:66956268-66956287 | None:intergenic | 35.0% | |
| TTGAACATCTGGCTAAGAAA+TGG | + | chr8.1:66956220-66956239 | MS.gene23677:CDS | 35.0% | |
| ! | CTCTTTTGCCAAGTTCTATT+AGG | + | chr8.1:66955925-66955944 | MS.gene23677:intron | 35.0% |
| ! | CTGTCGACTGTTATACTAAT+TGG | + | chr8.1:66956894-66956913 | MS.gene23677:intron | 35.0% |
| ! | TTTCCATTCTGGAAAACCTT+CGG | - | chr8.1:66955064-66955083 | None:intergenic | 35.0% |
| ! | TTTTGCCAAGTTCTATTAGG+TGG | + | chr8.1:66955928-66955947 | MS.gene23677:intron | 35.0% |
| !! | AACCTGAAATTTGGTGTTAG+AGG | - | chr8.1:66954101-66954120 | None:intergenic | 35.0% |
| !! | ACCTGAAATTTGGTGTTAGA+GGG | - | chr8.1:66954100-66954119 | None:intergenic | 35.0% |
| !! | ATTCTAGGATTCCCATATAC+AGG | + | chr8.1:66954897-66954916 | MS.gene23677:intron | 35.0% |
| !! | ATTGAGGGTGTTCAAAAAAG+AGG | + | chr8.1:66954808-66954827 | MS.gene23677:intron | 35.0% |
| !! | GGTGCATTATTTTGTGTACT+AGG | + | chr8.1:66956072-66956091 | MS.gene23677:intron | 35.0% |
| !! | GTTGTTGTTGTTGATGATGT+AGG | + | chr8.1:66953922-66953941 | MS.gene23677:intron | 35.0% |
| !! | TCACTTTCTAGGATTGTGAT+TGG | - | chr8.1:66954765-66954784 | None:intergenic | 35.0% |
| !! | TGTTGTTGATGATGTAGGTT+GGG | + | chr8.1:66953927-66953946 | MS.gene23677:intron | 35.0% |
| !! | TTCTAGGATTCCCATATACA+GGG | + | chr8.1:66954898-66954917 | MS.gene23677:intron | 35.0% |
| !! | TTGAGGGTGTTCAAAAAAGA+GGG | + | chr8.1:66954809-66954828 | MS.gene23677:intron | 35.0% |
| !! | TTGTTGTTGATGATGTAGGT+TGG | + | chr8.1:66953926-66953945 | MS.gene23677:intron | 35.0% |
| !!! | ACATATTTTGACAGCTCTCT+AGG | + | chr8.1:66956606-66956625 | MS.gene23677:intron | 35.0% |
| !!! | ATCTTTTACAAGAAGTGCTC+CGG | - | chr8.1:66953642-66953661 | None:intergenic | 35.0% |
| !!! | TGGAGATATTTTTGGAGGAT+CGG | + | chr8.1:66954067-66954086 | MS.gene23677:CDS | 35.0% |
| AATGCAAATGAGGTCTCTCT+TGG | - | chr8.1:66953748-66953767 | None:intergenic | 40.0% | |
| ACATATTCTCCTGCACACAT+TGG | - | chr8.1:66957024-66957043 | None:intergenic | 40.0% | |
| AGAGATGTAAATGCGTCCTT+TGG | - | chr8.1:66955282-66955301 | None:intergenic | 40.0% | |
| AGCTGGTCGTTTATTGTACT+AGG | + | chr8.1:66956838-66956857 | MS.gene23677:intron | 40.0% | |
| AGTAACTGCAACACAAACTG+GGG | - | chr8.1:66955487-66955506 | None:intergenic | 40.0% | |
| ATGACTAACTAGGAACCAGA+GGG | - | chr8.1:66954162-66954181 | None:intergenic | 40.0% | |
| ATGCAGATAGAGTGGTTAAC+GGG | + | chr8.1:66956690-66956709 | MS.gene23677:intron | 40.0% | |
| ATTGAAATCAAAGCCAGTGG+TGG | - | chr8.1:66956554-66956573 | None:intergenic | 40.0% | |
| CATGGTAGAAGTAGATTTCC+TGG | + | chr8.1:66956196-66956215 | MS.gene23677:CDS | 40.0% | |
| GATTTCCTGGATTGAACATC+TGG | + | chr8.1:66956209-66956228 | MS.gene23677:CDS | 40.0% | |
| GCGCAAATAACTACATGTGA+CGG | - | chr8.1:66956930-66956949 | None:intergenic | 40.0% | |
| GCGCATATTTCTTACATAGG+TGG | + | chr8.1:66955224-66955243 | MS.gene23677:intron | 40.0% | |
| GGAAAGAAACTATGGATTCC+TGG | + | chr8.1:66955079-66955098 | MS.gene23677:CDS | 40.0% | |
| GGGAGTGACCTTGAAAAATA+TGG | + | chr8.1:66956118-66956137 | MS.gene23677:CDS | 40.0% | |
| GGTTGTCTTCTTATTCAGAC+AGG | + | chr8.1:66956271-66956290 | MS.gene23677:CDS | 40.0% | |
| GTCCGAAATGCACAAATTCT+AGG | + | chr8.1:66954882-66954901 | MS.gene23677:intron | 40.0% | |
| TACATAGGTGGTTGCTGAAA+TGG | + | chr8.1:66955236-66955255 | MS.gene23677:intron | 40.0% | |
| TCCCTCTAACACCAAATTTC+AGG | + | chr8.1:66954096-66954115 | MS.gene23677:CDS | 40.0% | |
| TCTTATTCAGACAGGAAAGC+AGG | + | chr8.1:66956279-66956298 | MS.gene23677:CDS | 40.0% | |
| TCTTCATCCACCAAACTTCT+CGG | - | chr8.1:66953977-66953996 | None:intergenic | 40.0% | |
| TGGACAAAAAGTCGAAGTGA+AGG | + | chr8.1:66956240-66956259 | MS.gene23677:CDS | 40.0% | |
| TTGCTGAAATGGCAGCTATT+GGG | + | chr8.1:66955247-66955266 | MS.gene23677:CDS | 40.0% | |
| ! | ATTTTGAACTGGCCAAGAGT+TGG | - | chr8.1:66955678-66955697 | None:intergenic | 40.0% |
| ! | CATTTAAGATCAGCACCAAC+AGG | - | chr8.1:66954049-66954068 | None:intergenic | 40.0% |
| ! | TATTGGGTTTGGTCTTCCAA+AGG | + | chr8.1:66955263-66955282 | MS.gene23677:CDS | 40.0% |
| ! | TGAACCTGGTAATGCAAATG+AGG | - | chr8.1:66953758-66953777 | None:intergenic | 40.0% |
| ! | TGCTATCATTTTGTATCCCC+AGG | - | chr8.1:66955100-66955119 | None:intergenic | 40.0% |
| ! | TTCCATTCTGGAAAACCTTC+GGG | - | chr8.1:66955063-66955082 | None:intergenic | 40.0% |
| !! | AGCTGCATTGATTGCATCAA+TGG | - | chr8.1:66956763-66956782 | None:intergenic | 40.0% |
| !! | CTGTTGGTGCTGATCTTAAA+TGG | + | chr8.1:66954047-66954066 | MS.gene23677:CDS | 40.0% |
| !! | GTTGTTGATGATGTAGGTTG+GGG | + | chr8.1:66953928-66953947 | MS.gene23677:intron | 40.0% |
| !!! | CAAGTAGGAACTGTTTTTGC+AGG | + | chr8.1:66956142-66956161 | MS.gene23677:CDS | 40.0% |
| !!! | TTTTTTCGGTGTTAACCCTC+TGG | + | chr8.1:66954144-66954163 | MS.gene23677:intron | 40.0% |
| AAATACCCTCCAATGTGTGC+AGG | + | chr8.1:66957012-66957031 | MS.gene23677:CDS | 45.0% | |
| AAGTGCTCCGGTTTCACTTA+AGG | - | chr8.1:66953630-66953649 | None:intergenic | 45.0% | |
| ACGAAGTAGTTGCCACAAAC+AGG | + | chr8.1:66956736-66956755 | MS.gene23677:CDS | 45.0% | |
| AGATAGAGTGGTTAACGGGA+GGG | + | chr8.1:66956694-66956713 | MS.gene23677:intron | 45.0% | |
| ATTCTCCTGCACACATTGGA+GGG | - | chr8.1:66957020-66957039 | None:intergenic | 45.0% | |
| CATGACTAACTAGGAACCAG+AGG | - | chr8.1:66954163-66954182 | None:intergenic | 45.0% | |
| CTTAGCCAGATGTTCAATCC+AGG | - | chr8.1:66956217-66956236 | None:intergenic | 45.0% | |
| CTTGCAGTCTCAACTCTCAA+AGG | - | chr8.1:66956583-66956602 | None:intergenic | 45.0% | |
| GAAATGGCAGCTATTGGGTT+TGG | + | chr8.1:66955252-66955271 | MS.gene23677:CDS | 45.0% | |
| GAGACCTCATTTGCATTACC+AGG | + | chr8.1:66953751-66953770 | MS.gene23677:CDS | 45.0% | |
| GATTCGGCAAAATGTCCCAA+GGG | - | chr8.1:66956979-66956998 | None:intergenic | 45.0% | |
| GGAAAACCTTCGGGAATTAC+TGG | - | chr8.1:66955054-66955073 | None:intergenic | 45.0% | |
| GTATGAGGTCGATGTTCTTC+CGG | - | chr8.1:66954025-66954044 | None:intergenic | 45.0% | |
| GTTGCTGAAATGGCAGCTAT+TGG | + | chr8.1:66955246-66955265 | MS.gene23677:CDS | 45.0% | |
| TATTCTCCTGCACACATTGG+AGG | - | chr8.1:66957021-66957040 | None:intergenic | 45.0% | |
| TGCATCAATGGTCCTGTTTG+TGG | - | chr8.1:66956751-66956770 | None:intergenic | 45.0% | |
| TGCATGAGTCTCACTCTTGT+TGG | - | chr8.1:66955565-66955584 | None:intergenic | 45.0% | |
| TGGCGAATCTTGAACTCATG+AGG | - | chr8.1:66953728-66953747 | None:intergenic | 45.0% | |
| ! | TTCCCGAAGGTTTTCCAGAA+TGG | + | chr8.1:66955058-66955077 | MS.gene23677:CDS | 45.0% |
| !! | AGTGGAAGTACCGAGAAGTT+TGG | + | chr8.1:66953964-66953983 | MS.gene23677:CDS | 45.0% |
| !! | TTTTCAAGGTCACTCCCTGT+TGG | - | chr8.1:66956115-66956134 | None:intergenic | 45.0% |
| !!! | TATTTTTTTTTTTTTTTTGA+GGG | + | chr8.1:66955163-66955182 | MS.gene23677:intron | 5.0% |
| !!! | TTATTTTTTTTTTTTTTTTG+AGG | + | chr8.1:66955162-66955181 | MS.gene23677:intron | 5.0% |
| AAAGTGGCACCAAATGCTCG+AGG | - | chr8.1:66955761-66955780 | None:intergenic | 50.0% | |
| AAGTGGCACCAAATGCTCGA+GGG | - | chr8.1:66955760-66955779 | None:intergenic | 50.0% | |
| ACTTAAGGTGCGGCTGACAT+CGG | - | chr8.1:66953615-66953634 | None:intergenic | 50.0% | |
| AGCCGCACCTTAAGTGAAAC+CGG | + | chr8.1:66953620-66953639 | MS.gene23677:CDS | 50.0% | |
| CAGATAGAGTGGTTAACGGG+AGG | + | chr8.1:66956693-66956712 | MS.gene23677:intron | 50.0% | |
| CATCGACCTCATACTCCTGT+TGG | + | chr8.1:66954031-66954050 | MS.gene23677:CDS | 50.0% | |
| CTCCGGTTTCACTTAAGGTG+CGG | - | chr8.1:66953625-66953644 | None:intergenic | 50.0% | |
| CTTATGGAGAGTCTCGTCGA+CGG | + | chr8.1:66956800-66956819 | MS.gene23677:CDS | 50.0% | |
| GATAGAGTGGTTAACGGGAG+GGG | + | chr8.1:66956695-66956714 | MS.gene23677:intron | 50.0% | |
| GGTGAGTGCTCACAAAAAGC+TGG | + | chr8.1:66956821-66956840 | MS.gene23677:intron | 50.0% | |
| GTCGAAGTGAAGGTTCCAGT+AGG | + | chr8.1:66956250-66956269 | MS.gene23677:CDS | 50.0% | |
| TGCGCACATAGCATCAGATG+CGG | + | chr8.1:66956945-66956964 | MS.gene23677:CDS | 50.0% | |
| TGGATCGCGGTCGTTTGAAA+CGG | - | chr8.1:66953573-66953592 | None:intergenic | 50.0% | |
| TTATCTTCGACGGTGCATCG+CGG | - | chr8.1:66953665-66953684 | None:intergenic | 50.0% | |
| TTTGCTTGCCAGTGGCGATT+CGG | - | chr8.1:66956995-66957014 | None:intergenic | 50.0% | |
| ! | ACATTTTGCCGAATCGCCAC+TGG | + | chr8.1:66956984-66957003 | MS.gene23677:CDS | 50.0% |
| ! | CGATTCGGCAAAATGTCCCA+AGG | - | chr8.1:66956980-66956999 | None:intergenic | 50.0% |
| ! | TCAGCACCAACAGGAGTATG+AGG | - | chr8.1:66954040-66954059 | None:intergenic | 50.0% |
| !! | GGAAGTACCGAGAAGTTTGG+TGG | + | chr8.1:66953967-66953986 | MS.gene23677:CDS | 50.0% |
| CATCGGCGCAGAGAGATTGA+AGG | - | chr8.1:66953598-66953617 | None:intergenic | 55.0% | |
| CCTGTTGGAGCTAGCAGATG+CGG | - | chr8.1:66956100-66956119 | None:intergenic | 55.0% | |
| CGCATCTGCTAGCTCCAACA+GGG | + | chr8.1:66956098-66956117 | MS.gene23677:CDS | 55.0% | |
| CTCGGTACTTCCACTCTCTC+CGG | - | chr8.1:66953959-66953978 | None:intergenic | 55.0% | |
| CTGTTGGAGCTAGCAGATGC+GGG | - | chr8.1:66956099-66956118 | None:intergenic | 55.0% | |
| GCAGAGCCAGTAATTCCCGA+AGG | + | chr8.1:66955045-66955064 | MS.gene23677:CDS | 55.0% | |
| TGTTGGGACCCTCGAGCATT+TGG | + | chr8.1:66955749-66955768 | MS.gene23677:intron | 55.0% | |
| ! | ATCGCGGTCGTTTGAAACGG+CGG | - | chr8.1:66953570-66953589 | None:intergenic | 55.0% |
| ! | GAGATTGAAGGCGTGGATCG+CGG | - | chr8.1:66953586-66953605 | None:intergenic | 55.0% |
| ! | GATGTAGGTTGGGGTTACGC+CGG | + | chr8.1:66953937-66953956 | MS.gene23677:intron | 55.0% |
| !! | AGATGCGGTTCTGAAGCCCT+TGG | + | chr8.1:66956960-66956979 | MS.gene23677:CDS | 55.0% |
| !! | GATGCGGTTCTGAAGCCCTT+GGG | + | chr8.1:66956961-66956980 | MS.gene23677:CDS | 55.0% |
| !! | GGAGGGTATTTGCTTGCCAG+TGG | - | chr8.1:66957003-66957022 | None:intergenic | 55.0% |
| CCGCATCTGCTAGCTCCAAC+AGG | + | chr8.1:66956097-66956116 | MS.gene23677:CDS | 60.0% | |
| GCGCAGAGAGATTGAAGGCG+TGG | - | chr8.1:66953593-66953612 | None:intergenic | 60.0% | |
| ! | GGTCGTTTGAAACGGCGGAG+AGG | - | chr8.1:66953565-66953584 | None:intergenic | 60.0% |
| ACGGGAGGGGACTGCATAGC+TGG | + | chr8.1:66956708-66956727 | MS.gene23677:CDS | 65.0% | |
| TGGGGTTACGCCGGAGAGAG+TGG | + | chr8.1:66953946-66953965 | MS.gene23677:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 66953530 | 66957086 | 66953530 | ID=MS.gene23677 |
| chr8.1 | mRNA | 66953530 | 66957086 | 66953530 | ID=MS.gene23677.t1;Parent=MS.gene23677 |
| chr8.1 | exon | 66953530 | 66953772 | 66953530 | ID=MS.gene23677.t1.exon1;Parent=MS.gene23677.t1 |
| chr8.1 | CDS | 66953530 | 66953772 | 66953530 | ID=cds.MS.gene23677.t1;Parent=MS.gene23677.t1 |
| chr8.1 | exon | 66953944 | 66954117 | 66953944 | ID=MS.gene23677.t1.exon2;Parent=MS.gene23677.t1 |
| chr8.1 | CDS | 66953944 | 66954117 | 66953944 | ID=cds.MS.gene23677.t1;Parent=MS.gene23677.t1 |
| chr8.1 | exon | 66955036 | 66955128 | 66955036 | ID=MS.gene23677.t1.exon3;Parent=MS.gene23677.t1 |
| chr8.1 | CDS | 66955036 | 66955128 | 66955036 | ID=cds.MS.gene23677.t1;Parent=MS.gene23677.t1 |
| chr8.1 | exon | 66955243 | 66955311 | 66955243 | ID=MS.gene23677.t1.exon4;Parent=MS.gene23677.t1 |
| chr8.1 | CDS | 66955243 | 66955311 | 66955243 | ID=cds.MS.gene23677.t1;Parent=MS.gene23677.t1 |
| chr8.1 | exon | 66956094 | 66956300 | 66956094 | ID=MS.gene23677.t1.exon5;Parent=MS.gene23677.t1 |
| chr8.1 | CDS | 66956094 | 66956300 | 66956094 | ID=cds.MS.gene23677.t1;Parent=MS.gene23677.t1 |
| chr8.1 | exon | 66956696 | 66956821 | 66956696 | ID=MS.gene23677.t1.exon6;Parent=MS.gene23677.t1 |
| chr8.1 | CDS | 66956696 | 66956821 | 66956696 | ID=cds.MS.gene23677.t1;Parent=MS.gene23677.t1 |
| chr8.1 | exon | 66956940 | 66957086 | 66956940 | ID=MS.gene23677.t1.exon7;Parent=MS.gene23677.t1 |
| chr8.1 | CDS | 66956940 | 66957086 | 66956940 | ID=cds.MS.gene23677.t1;Parent=MS.gene23677.t1 |
| Gene Sequence |
| Protein sequence |
