AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051200.t1 MTR_2g040830 79.239 289 44 2 1 274 1 288 6.36e-161 450
MS.gene051200.t1 MTR_2g040690 77.737 274 45 2 16 274 18 290 2.34e-155 436
MS.gene051200.t1 MTR_2g040740 75.433 289 54 3 1 274 1 287 3.62e-147 415
MS.gene051200.t1 MTR_2g040650 69.310 290 67 6 1 274 1 284 6.44e-127 363
MS.gene051200.t1 MTR_2g040870 82.249 169 15 1 5 158 1 169 6.99e-86 254
MS.gene051200.t1 MTR_0027s0260 47.603 292 129 7 1 274 1 286 7.85e-84 253
MS.gene051200.t1 MTR_5g043550 50.177 283 116 7 9 273 6 281 2.39e-83 252
MS.gene051200.t1 MTR_1g099310 49.828 291 120 8 1 273 1 283 5.57e-83 251
MS.gene051200.t1 MTR_8g055940 46.758 293 129 8 1 274 1 285 1.41e-81 248
MS.gene051200.t1 MTR_1g099320 49.815 271 112 6 23 274 20 285 8.65e-81 245
MS.gene051200.t1 MTR_7g116850 44.407 295 137 9 1 273 24 313 2.56e-76 235
MS.gene051200.t1 MTR_7g116350 47.857 280 112 6 11 273 9 271 3.28e-76 247
MS.gene051200.t1 MTR_1g099290 46.048 291 133 7 1 273 1 285 2.53e-75 240
MS.gene051200.t1 MTR_1g099350 47.015 268 116 7 24 273 19 278 8.13e-73 225
MS.gene051200.t1 MTR_8g467650 45.172 290 133 8 5 274 3 286 2.52e-71 221
MS.gene051200.t1 MTR_2g102020 44.710 293 131 8 7 273 13 300 1.68e-70 221
MS.gene051200.t1 MTR_6g023340 45.221 272 124 9 24 274 23 290 7.63e-69 215
MS.gene051200.t1 MTR_2g040880 82.857 105 18 0 170 274 1 105 3.14e-59 185
MS.gene051200.t1 MTR_2g040890 51.705 176 65 4 1 158 1 174 7.11e-50 163
MS.gene051200.t1 MTR_2g040850 54.605 152 44 4 1 129 1 150 2.50e-41 142
MS.gene051200.t1 MTR_2g040850 71.154 52 12 1 226 274 158 209 2.55e-16 76.6
MS.gene051200.t1 MTR_2g040900 56.481 108 46 1 167 273 21 128 5.95e-37 129
MS.gene051200.t1 MTR_4g077310 40.244 82 45 2 191 272 3 80 6.49e-13 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051200.t1 AT5G24090 45.423 284 133 6 8 273 10 289 8.19e-79 241

Find 63 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCCCTCGGATGTGATTC+TGG 0.140457 2.3:-48962102 MS.gene051200:CDS
AAGGATCAACGTTTGCATTT+TGG 0.171728 2.3:+48962398 None:intergenic
TACATGGTTCAAATCTTTAT+TGG 0.196152 2.3:-48961954 MS.gene051200:CDS
CCCATGAACACGGTATTATT+TGG 0.228231 2.3:+48960538 None:intergenic
GGCAAAATCAATACCATCTA+AGG 0.266813 2.3:+48961981 None:intergenic
ACCAAATGATCTCATTTCTA+AGG 0.290925 2.3:-48960470 MS.gene051200:CDS
CTTGGAAGTGTTACCTTAGA+TGG 0.298818 2.3:-48961994 MS.gene051200:CDS
ACATGGTTCAAATCTTTATT+GGG 0.309296 2.3:-48961953 MS.gene051200:CDS
CACTTATAGGTATTTCTACT+TGG 0.325388 2.3:-48960737 MS.gene051200:intron
GCTTTGTCAAGGTACTTATC+TGG 0.342883 2.3:+48960691 None:intergenic
ATTAAACATTGTCAACAAAA+AGG 0.343835 2.3:-48962138 MS.gene051200:CDS
GTCCCAAGTTGGAACTTTGC+AGG 0.363602 2.3:-48962204 MS.gene051200:CDS
AAGATTTGAACCATGTATAA+TGG 0.368045 2.3:+48961960 None:intergenic
TCTTAAAATCATGGAAAGAT+TGG 0.373901 2.3:-48960576 MS.gene051200:CDS
ATTAAACCGACTTCGAACTA+TGG 0.375842 2.3:-48960436 MS.gene051200:CDS
CTTGACAAAGCTATCAAAAC+TGG 0.381379 2.3:-48960679 MS.gene051200:CDS
ACCAAATAATACCGTGTTCA+TGG 0.382839 2.3:-48960539 MS.gene051200:CDS
CTTATCTGGCATACAACATT+GGG 0.383360 2.3:+48960705 None:intergenic
ACCTTAGAAATGAGATCATT+TGG 0.385560 2.3:+48960469 None:intergenic
ATGGCAATATTGCCATCTAC+TGG 0.399329 2.3:-48962326 MS.gene051200:CDS
ACTATGGAGGAGTTATGCTT+TGG 0.407448 2.3:-48960420 MS.gene051200:CDS
AACTTCCTCAGTGGTCAATC+TGG 0.409913 2.3:-48962021 MS.gene051200:CDS
CTACATTGCTCTTAAAATCA+TGG 0.423108 2.3:-48960585 MS.gene051200:CDS
CTATGGAGGAGTTATGCTTT+GGG 0.427042 2.3:-48960419 MS.gene051200:CDS
TTCGAAGTCGGTTTAATGAT+AGG 0.428983 2.3:+48960442 None:intergenic
ACAATATAAGACATCGAAAC+AGG 0.432849 2.3:-48961909 MS.gene051200:intron
TTGCAGGTCATTGTGGTGGC+TGG 0.435161 2.3:-48962188 MS.gene051200:CDS
CCACCACTAGGAGCTGCATT+AGG 0.480850 2.3:+48960502 None:intergenic
TAGCATCATCTGGTGAGCTA+AGG 0.493192 2.3:+48962070 None:intergenic
TGGCAATATTGCCATCTACT+GGG 0.503482 2.3:-48962325 MS.gene051200:CDS
TGACCTGCAAAGTTCCAACT+TGG 0.508655 2.3:+48962201 None:intergenic
CCAAATAATACCGTGTTCAT+GGG 0.512696 2.3:-48960538 MS.gene051200:CDS
ACTTATCTGGCATACAACAT+TGG 0.519502 2.3:+48960704 None:intergenic
AGCATCATCTGGTGAGCTAA+GGG 0.519794 2.3:+48962071 None:intergenic
GGAGCTGCATTAGGTGCTGC+TGG 0.526335 2.3:+48960511 None:intergenic
AGTGGTCAATCTGGTCCACT+TGG 0.538471 2.3:-48962012 MS.gene051200:CDS
TTATATCATATTGACATGGA+GGG 0.540692 2.3:+48960620 None:intergenic
GAGGAGGAAGAGTCCCAAGT+TGG 0.548660 2.3:-48962215 MS.gene051200:CDS
AACTTTGCAGGTCATTGTGG+TGG 0.563468 2.3:-48962192 MS.gene051200:CDS
TGGGGCCAAAACCTAAAAGA+TGG 0.568656 2.3:-48962306 MS.gene051200:CDS
ATCAAAACATCATCAAGTGA+TGG 0.575711 2.3:-48962345 MS.gene051200:CDS
TATTGTGAAGATGTTTAGCA+AGG 0.578706 2.3:+48961926 None:intergenic
TTTATATCATATTGACATGG+AGG 0.598528 2.3:+48960619 None:intergenic
ATCTGGTGAGCTAAGGGAGT+AGG 0.600761 2.3:+48962077 None:intergenic
GGCAATATTGCCATCTACTG+GGG 0.600928 2.3:-48962324 MS.gene051200:CDS
ACTCCTCCATAGTTCGAAGT+CGG 0.602176 2.3:+48960430 None:intergenic
TTAGAAATGAGATCATTTGG+TGG 0.607316 2.3:+48960472 None:intergenic
TGCTGGTAGTCCCATGAACA+CGG 0.611631 2.3:+48960528 None:intergenic
ATATTGTTAAGATCAACAAA+AGG 0.612733 2.3:+48962379 None:intergenic
TTGACATCAACATGTGACAC+TGG 0.615620 2.3:-48962279 MS.gene051200:intron
GACCTGCAAAGTTCCAACTT+GGG 0.616777 2.3:+48962202 None:intergenic
TGGAACTTTGCAGGTCATTG+TGG 0.634428 2.3:-48962195 MS.gene051200:CDS
GGATCCAGAATCACATCCGA+GGG 0.644473 2.3:+48962098 None:intergenic
GCACCTAATGCAGCTCCTAG+TGG 0.656531 2.3:-48960505 MS.gene051200:CDS
AGTGTCACATGTTGATGTCA+AGG 0.656681 2.3:+48962281 None:intergenic
AAACCGACTTCGAACTATGG+AGG 0.664384 2.3:-48960433 MS.gene051200:CDS
CCTAATGCAGCTCCTAGTGG+TGG 0.665138 2.3:-48960502 MS.gene051200:CDS
AGGATCCAGAATCACATCCG+AGG 0.665203 2.3:+48962097 None:intergenic
CTCTATACTAACTTCCTCAG+TGG 0.676367 2.3:-48962030 MS.gene051200:CDS
GGTGGTATATAACCACCACT+AGG 0.690618 2.3:+48960490 None:intergenic
TCTAAGGTAACACTTCCAAG+TGG 0.714737 2.3:+48961997 None:intergenic
TTATCTGGCATACAACATTG+GGG 0.719379 2.3:+48960706 None:intergenic
GTGGACCAGATTGACCACTG+AGG 0.819492 2.3:+48962016 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAGAGTATTAATTAATA+AGG + chr2.3:48961294-48961313 None:intergenic 10.0%
!!! AAAAGAGTATTAATTAATAA+GGG + chr2.3:48961293-48961312 None:intergenic 10.0%
!!! TTTAACAATTACTATTTTAT+TGG - chr2.3:48961837-48961856 MS.gene051200:intron 10.0%
!! CTTATATTAATTGTTAGATT+TGG + chr2.3:48961501-48961520 None:intergenic 15.0%
!! TAACTAATTAAATCACTTAT+AGG - chr2.3:48962054-48962073 MS.gene051200:CDS 15.0%
!! AAATAGTAATTGTTAAACCA+AGG + chr2.3:48961834-48961853 None:intergenic 20.0%
!! ATATTGTTAAGATCAACAAA+AGG + chr2.3:48960428-48960447 None:intergenic 20.0%
!! ATTAAACATTGTCAACAAAA+AGG - chr2.3:48960666-48960685 MS.gene051200:CDS 20.0%
!!! CTTTTTATATCATATTGACA+TGG + chr2.3:48962191-48962210 None:intergenic 20.0%
!!! GGTAAATTTACTTTGTTTTA+TGG - chr2.3:48960916-48960935 MS.gene051200:intron 20.0%
! AACACTAACATATAGTTTCT+TGG + chr2.3:48961525-48961544 None:intergenic 25.0%
! AACTTAGAACTTAGAATGTA+GGG - chr2.3:48961912-48961931 MS.gene051200:CDS 25.0%
! AAGATTTGAACCATGTATAA+TGG + chr2.3:48960847-48960866 None:intergenic 25.0%
! ACATGGTTCAAATCTTTATT+GGG - chr2.3:48960851-48960870 MS.gene051200:intron 25.0%
! TACATGGTTCAAATCTTTAT+TGG - chr2.3:48960850-48960869 MS.gene051200:intron 25.0%
! TCTTAAAATCATGGAAAGAT+TGG - chr2.3:48962228-48962247 MS.gene051200:intron 25.0%
! TTATATCATATTGACATGGA+GGG + chr2.3:48962187-48962206 None:intergenic 25.0%
! TTGTTGATACTTGAAAATGA+CGG - chr2.3:48961436-48961455 MS.gene051200:intron 25.0%
! TTTATATCATATTGACATGG+AGG + chr2.3:48962188-48962207 None:intergenic 25.0%
!! TTGATAGCATTTACATTTCA+TGG - chr2.3:48962016-48962035 MS.gene051200:CDS 25.0%
!!! ATTGATTTTGCCATTATACA+TGG - chr2.3:48960834-48960853 MS.gene051200:intron 25.0%
ACAATATAAGACATCGAAAC+AGG - chr2.3:48960895-48960914 MS.gene051200:intron 30.0%
ACCAAATGATCTCATTTCTA+AGG - chr2.3:48962334-48962353 MS.gene051200:CDS 30.0%
ACCTTAGAAATGAGATCATT+TGG + chr2.3:48962338-48962357 None:intergenic 30.0%
ACTTAGAACTTAGAATGTAG+GGG - chr2.3:48961913-48961932 MS.gene051200:CDS 30.0%
ATCAAAACATCATCAAGTGA+TGG - chr2.3:48960459-48960478 MS.gene051200:CDS 30.0%
CTACATTGCTCTTAAAATCA+TGG - chr2.3:48962219-48962238 MS.gene051200:intron 30.0%
CTATCACTCATTCTATGATT+TGG + chr2.3:48961974-48961993 None:intergenic 30.0%
GAACTTAGAACTTAGAATGT+AGG - chr2.3:48961911-48961930 MS.gene051200:CDS 30.0%
TAAGCTTTCTTCAATGTCTT+TGG - chr2.3:48960567-48960586 MS.gene051200:CDS 30.0%
TATTGTGAAGATGTTTAGCA+AGG + chr2.3:48960881-48960900 None:intergenic 30.0%
TTAGAAATGAGATCATTTGG+TGG + chr2.3:48962335-48962354 None:intergenic 30.0%
! AATCTAAGATATTCTAGCCA+TGG + chr2.3:48960966-48960985 None:intergenic 30.0%
! CACTTATAGGTATTTCTACT+TGG - chr2.3:48962067-48962086 MS.gene051200:CDS 30.0%
!! ATAACTAGCATAGCTTTGTA+TGG - chr2.3:48961764-48961783 MS.gene051200:intron 30.0%
!! ATTTCATGGCTTTAACATTC+TGG - chr2.3:48962030-48962049 MS.gene051200:CDS 30.0%
!!! GAAACATTTTTAGCATCATC+TGG + chr2.3:48960747-48960766 None:intergenic 30.0%
!!! TGATGATGTTTTGATAGTGA+TGG + chr2.3:48960454-48960473 None:intergenic 30.0%
ACCAAATAATACCGTGTTCA+TGG - chr2.3:48962265-48962284 MS.gene051200:intron 35.0%
ACTTATCTGGCATACAACAT+TGG + chr2.3:48962103-48962122 None:intergenic 35.0%
AGGAATCAAATATGAGACCT+TGG - chr2.3:48961814-48961833 MS.gene051200:intron 35.0%
CATTTGATATGTTAGCTACG+TGG - chr2.3:48961175-48961194 MS.gene051200:intron 35.0%
CCAAATAATACCGTGTTCAT+GGG - chr2.3:48962266-48962285 MS.gene051200:intron 35.0%
CTTATCTGGCATACAACATT+GGG + chr2.3:48962102-48962121 None:intergenic 35.0%
CTTGACAAAGCTATCAAAAC+TGG - chr2.3:48962125-48962144 MS.gene051200:CDS 35.0%
GCTCAACTTAATAACTTCGA+TGG + chr2.3:48961367-48961386 None:intergenic 35.0%
GGCAAAATCAATACCATCTA+AGG + chr2.3:48960826-48960845 None:intergenic 35.0%
TTATCTGGCATACAACATTG+GGG + chr2.3:48962101-48962120 None:intergenic 35.0%
! AACTGGTCTCTCAAATTAGT+CGG + chr2.3:48961706-48961725 None:intergenic 35.0%
! AAGGATCAACGTTTGCATTT+TGG + chr2.3:48960409-48960428 None:intergenic 35.0%
! AATGTCAGTGTACTTTTCCA+TGG - chr2.3:48960946-48960965 MS.gene051200:intron 35.0%
! ATTAAACCGACTTCGAACTA+TGG - chr2.3:48962368-48962387 MS.gene051200:CDS 35.0%
! GTCAAAGTTTTTCTTTCCCT+CGG - chr2.3:48960690-48960709 MS.gene051200:CDS 35.0%
! TCACTCATTCTATGATTTGG+TGG + chr2.3:48961971-48961990 None:intergenic 35.0%
! TTCGAAGTCGGTTTAATGAT+AGG + chr2.3:48962365-48962384 None:intergenic 35.0%
!! TGATTTGGTGGATTGAATGT+AGG + chr2.3:48961959-48961978 None:intergenic 35.0%
!!! CAGTTTTGATAGCTTTGTCA+AGG + chr2.3:48962127-48962146 None:intergenic 35.0%
ACTATGGAGGAGTTATGCTT+TGG - chr2.3:48962384-48962403 MS.gene051200:CDS 40.0%
AGTGTCACATGTTGATGTCA+AGG + chr2.3:48960526-48960545 None:intergenic 40.0%
ATGGCAATATTGCCATCTAC+TGG - chr2.3:48960478-48960497 MS.gene051200:CDS 40.0%
ATTTCATCTCCCTTAACTCG+AGG + chr2.3:48961389-48961408 None:intergenic 40.0%
CCCATGAACACGGTATTATT+TGG + chr2.3:48962269-48962288 None:intergenic 40.0%
CTATGGAGGAGTTATGCTTT+GGG - chr2.3:48962385-48962404 MS.gene051200:CDS 40.0%
CTCTATACTAACTTCCTCAG+TGG - chr2.3:48960774-48960793 MS.gene051200:intron 40.0%
GCTTTCTTCAATGTCTTTGG+AGG - chr2.3:48960570-48960589 MS.gene051200:CDS 40.0%
GTCTCATATTTGATTCCTCC+TGG + chr2.3:48961812-48961831 None:intergenic 40.0%
TGGCAATATTGCCATCTACT+GGG - chr2.3:48960479-48960498 MS.gene051200:CDS 40.0%
TTGACATCAACATGTGACAC+TGG - chr2.3:48960525-48960544 MS.gene051200:CDS 40.0%
! GCTTTGTCAAGGTACTTATC+TGG + chr2.3:48962116-48962135 None:intergenic 40.0%
! TAAGTTGAGCCTCGAGTTAA+GGG - chr2.3:48961377-48961396 MS.gene051200:intron 40.0%
! TCTAAGGTAACACTTCCAAG+TGG + chr2.3:48960810-48960829 None:intergenic 40.0%
! TTCTTCAATGTCTTTGGAGG+AGG - chr2.3:48960573-48960592 MS.gene051200:CDS 40.0%
!! ATGTCAAGGTGCCATCTTTT+AGG + chr2.3:48960512-48960531 None:intergenic 40.0%
!! CTTGGAAGTGTTACCTTAGA+TGG - chr2.3:48960810-48960829 MS.gene051200:intron 40.0%
!! TTAAGTTGAGCCTCGAGTTA+AGG - chr2.3:48961376-48961395 MS.gene051200:intron 40.0%
!!! AGGTGCCATCTTTTAGGTTT+TGG + chr2.3:48960506-48960525 None:intergenic 40.0%
!!! CGAGTTCGAGTTTTTTGCAA+GGG + chr2.3:48960644-48960663 None:intergenic 40.0%
!!! TCGAGTTCGAGTTTTTTGCA+AGG + chr2.3:48960645-48960664 None:intergenic 40.0%
AACCCATCGAAATTGACACC+AGG - chr2.3:48961791-48961810 MS.gene051200:intron 45.0%
AACTTCCTCAGTGGTCAATC+TGG - chr2.3:48960783-48960802 MS.gene051200:intron 45.0%
AACTTTGCAGGTCATTGTGG+TGG - chr2.3:48960612-48960631 MS.gene051200:CDS 45.0%
ACTCCTCCATAGTTCGAAGT+CGG + chr2.3:48962377-48962396 None:intergenic 45.0%
AGCATCATCTGGTGAGCTAA+GGG + chr2.3:48960736-48960755 None:intergenic 45.0%
GACCTGCAAAGTTCCAACTT+GGG + chr2.3:48960605-48960624 None:intergenic 45.0%
GGCAATATTGCCATCTACTG+GGG - chr2.3:48960480-48960499 MS.gene051200:CDS 45.0%
GGTGGTATATAACCACCACT+AGG + chr2.3:48962317-48962336 None:intergenic 45.0%
TAGCATCATCTGGTGAGCTA+AGG + chr2.3:48960737-48960756 None:intergenic 45.0%
TGACCTGCAAAGTTCCAACT+TGG + chr2.3:48960606-48960625 None:intergenic 45.0%
TGGAACTTTGCAGGTCATTG+TGG - chr2.3:48960609-48960628 MS.gene051200:CDS 45.0%
TGGGGCCAAAACCTAAAAGA+TGG - chr2.3:48960498-48960517 MS.gene051200:CDS 45.0%
TTAAATCCCCCCTCCTAAGT+GGG + chr2.3:48961735-48961754 None:intergenic 45.0%
TTTAAATCCCCCCTCCTAAG+TGG + chr2.3:48961736-48961755 None:intergenic 45.0%
! AAACCGACTTCGAACTATGG+AGG - chr2.3:48962371-48962390 MS.gene051200:CDS 45.0%
! CTCCTGGTGTCAATTTCGAT+GGG + chr2.3:48961796-48961815 None:intergenic 45.0%
AGGATCCAGAATCACATCCG+AGG + chr2.3:48960710-48960729 None:intergenic 50.0%
AGTGGTCAATCTGGTCCACT+TGG - chr2.3:48960792-48960811 MS.gene051200:intron 50.0%
ATCTGGTGAGCTAAGGGAGT+AGG + chr2.3:48960730-48960749 None:intergenic 50.0%
CCATCGAAATTGACACCAGG+AGG - chr2.3:48961794-48961813 MS.gene051200:intron 50.0%
CTTTCCCTCGGATGTGATTC+TGG - chr2.3:48960702-48960721 MS.gene051200:CDS 50.0%
GGATCCAGAATCACATCCGA+GGG + chr2.3:48960709-48960728 None:intergenic 50.0%
TGCTGGTAGTCCCATGAACA+CGG + chr2.3:48962279-48962298 None:intergenic 50.0%
! CCTCCTGGTGTCAATTTCGA+TGG + chr2.3:48961797-48961816 None:intergenic 50.0%
! GTCCCAAGTTGGAACTTTGC+AGG - chr2.3:48960600-48960619 MS.gene051200:CDS 50.0%
!! TAGGTTTTGGCCCCAGTAGA+TGG + chr2.3:48960493-48960512 None:intergenic 50.0%
ACCAGTTGCACTGCCCACTT+AGG - chr2.3:48961719-48961738 MS.gene051200:intron 55.0%
AGTTGCACTGCCCACTTAGG+AGG - chr2.3:48961722-48961741 MS.gene051200:intron 55.0%
CCACCACTAGGAGCTGCATT+AGG + chr2.3:48962305-48962324 None:intergenic 55.0%
CCTAATGCAGCTCCTAGTGG+TGG - chr2.3:48962302-48962321 MS.gene051200:CDS 55.0%
GAGGAGGAAGAGTCCCAAGT+TGG - chr2.3:48960589-48960608 MS.gene051200:CDS 55.0%
GCACCTAATGCAGCTCCTAG+TGG - chr2.3:48962299-48962318 MS.gene051200:CDS 55.0%
GTGGACCAGATTGACCACTG+AGG + chr2.3:48960791-48960810 None:intergenic 55.0%
GTTGCACTGCCCACTTAGGA+GGG - chr2.3:48961723-48961742 MS.gene051200:intron 55.0%
TCCTAAGTGGGCAGTGCAAC+TGG + chr2.3:48961723-48961742 None:intergenic 55.0%
TTGCACTGCCCACTTAGGAG+GGG - chr2.3:48961724-48961743 MS.gene051200:intron 55.0%
TTGCAGGTCATTGTGGTGGC+TGG - chr2.3:48960616-48960635 MS.gene051200:CDS 55.0%
TGCACTGCCCACTTAGGAGG+GGG - chr2.3:48961725-48961744 MS.gene051200:intron 60.0%
! GGAGCTGCATTAGGTGCTGC+TGG + chr2.3:48962296-48962315 None:intergenic 60.0%
GCACTGCCCACTTAGGAGGG+GGG - chr2.3:48961726-48961745 MS.gene051200:intron 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 48960399 48962427 48960399 ID=MS.gene051200
chr2.3 mRNA 48960399 48962427 48960399 ID=MS.gene051200.t1;Parent=MS.gene051200
chr2.3 exon 48962280 48962427 48962280 ID=MS.gene051200.t1.exon1;Parent=MS.gene051200.t1
chr2.3 CDS 48962280 48962427 48962280 ID=cds.MS.gene051200.t1;Parent=MS.gene051200.t1
chr2.3 exon 48961910 48962234 48961910 ID=MS.gene051200.t1.exon2;Parent=MS.gene051200.t1
chr2.3 CDS 48961910 48962234 48961910 ID=cds.MS.gene051200.t1;Parent=MS.gene051200.t1
chr2.3 exon 48960399 48960750 48960399 ID=MS.gene051200.t1.exon3;Parent=MS.gene051200.t1
chr2.3 CDS 48960399 48960750 48960399 ID=cds.MS.gene051200.t1;Parent=MS.gene051200.t1
Gene Sequence

>MS.gene051200

ATGGGTTCCAAAATGCAAACGTTGATCCTTTTGTTGATCTTAACAATATTCTCCATCACTATCAAAACATCATCAAGTGATGGCAATATTGCCATCTACTGGGGCCAAAACCTAAAAGATGGCACCTTGACATCAACATGTGACACTGGTAATTTCAAGATTGTACTATAAGCTTTCTTCAATGTCTTTGGAGGAGGAAGAGTCCCAAGTTGGAACTTTGCAGGTCATTGTGGTGGCTGGAGCCCTTGCAAAAAACTCGAACTCGAAATTAAACATTGTCAACAAAAAGGTGTCAAAGTTTTTCTTTCCCTCGGATGTGATTCTGGATCCTACTCCCTTAGCTCACCAGATGATGCTAAAAATGTTTCTGATTATCTCTATACTAACTTCCTCAGTGGTCAATCTGGTCCACTTGGAAGTGTTACCTTAGATGGTATTGATTTTGCCATTATACATGGTTCAAATCTTTATTGGGATGACCTTGCTAAACATCTTCACAATATAAGACATCGAAACAGGTAAATTTACTTTGTTTTATGGAATGAAAAATGTCAGTGTACTTTTCCATGGCTAGAATATCTTAGATTTTTAAAGAATTGTTTACACAAGTTCTAAGATGTTGTTGTTGTTATATTTATTTATTTTCTTAACAAATTAACATTTTTCTTTTAAGATTACGTAGAGTTTTTAGTAAAATTTGAAAGTGCAAAAAATTCTATGAAAAATGAGTTTAGTCTAGTCTCGTCACAATTTAAATGAAAAATATTATGCATGAACATTTGATATGTTAGCTACGTGGATTTGAATTTGTAATTCTTTATTTTTAAACATTTAATGAGTGTGAATTTCATAGTTAGACTCTTAAAAAAAAGAGTTTAGTCTACTAAATTACCCTTATTAATTAATACTCTTTTTGTTCTTTTTTATAAAAGAAAATAAAGTTTATTTTAAAAAAGAATTTTCAGCCATCGAAGTTATTAAGTTGAGCCTCGAGTTAAGGGAGATGAAATACAATAAATATAATTGTAATTAATATTTTGTTGATACTTGAAAATGACGGAATATGCAGACAAATATTCTGAATCTGTTTAAAAAAAATCCAAATCTAACAATTAATATAAGACCAAGAAACTATATGTTAGTGTTATGTTGTGACAGAACTATCAAAGTATTCTTATCGTTATGAGTAGATATAGACACTATGATATCGTTATGAGTAGATATAGACACTATGATTTAAACATTCTCTTTAACATTCACTTATTTTATTCTATTTTTAGAAAACTCGATATTTGATCGAAAAACCGACTAATTTGAGAGACCAGTTGCACTGCCCACTTAGGAGGGGGGATTTAAAGTCAGAGAATAACTAGCATAGCTTTGTATGGATTTAACCCATCGAAATTGACACCAGGAGGAATCAAATATGAGACCTTGGTTTAACAATTACTATTTTATTGGATGAAACTCATGTGAATCTTATTATCATAGAATGAGTGATAGATAGTGTTAGAACTTAGAACTTAGAATGTAGGGGATCATTTTCAAAGTATAGTACCTACATTCAATCCACCAAATCATAGAATGAGTGATAGATAGTGTTAGAACTTAGAACTATTGATAGCATTTACATTTCATGGCTTTAACATTCTGGCTAACTAATTAAATCACTTATAGGTATTTCTACTTGGCTGCTACACCCCAATGTTGTATGCCAGATAAGTACCTTGACAAAGCTATCAAAACTGGCTTGTTTGATTATGTACTTGTTCAATTCTACAATAACCCTCCATGTCAATATGATATAAAAAGCTCAGATGCTACATTGCTCTTAAAATCATGGAAAGATTGGACATCTTTTGTTCTACCAAATAATACCGTGTTCATGGGACTACCAGCAGCACCTAATGCAGCTCCTAGTGGTGGTTATATACCACCAAATGATCTCATTTCTAAGGTTCTTCCTATCATTAAACCGACTTCGAACTATGGAGGAGTTATGCTTTGGGATAGAGTTCATGATGTTTGA
Protein sequence

>MS.gene051200.t1

MGSKMQTLILLLILTIFSITIKTSSSDGNIAIYWGQNLKDGTLTSTCDTGGRVPSWNFAGHCGGWSPCKKLELEIKHCQQKGVKVFLSLGCDSGSYSLSSPDDAKNVSDYLYTNFLSGQSGPLGSVTLDGIDFAIIHGSNLYWDDLAKHLHNIRHRNRYFYLAATPQCCMPDKYLDKAIKTGLFDYVLVQFYNNPPCQYDIKSSDATLLLKSWKDWTSFVLPNNTVFMGLPAAPNAAPSGGYIPPNDLISKVLPIIKPTSNYGGVMLWDRVHDV