AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052989

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052989.t1 MTR_2g040830 90.909 330 29 1 1 330 1 329 0.0 605
MS.gene052989.t1 MTR_2g040690 88.554 332 35 2 1 330 1 331 0.0 588
MS.gene052989.t1 MTR_2g040740 86.970 330 41 2 1 330 1 328 0.0 565
MS.gene052989.t1 MTR_2g040650 79.154 331 62 5 1 330 1 325 7.98e-175 488
MS.gene052989.t1 MTR_5g043550 56.757 296 111 8 9 301 13 294 5.57e-103 304
MS.gene052989.t1 MTR_1g099310 53.618 304 130 8 1 301 1 296 4.53e-100 297
MS.gene052989.t1 MTR_0027s0260 51.974 304 132 8 5 301 2 298 2.75e-98 292
MS.gene052989.t1 MTR_8g055940 53.898 295 119 9 11 301 16 297 3.53e-96 287
MS.gene052989.t1 MTR_1g099290 52.685 298 130 7 4 298 6 295 9.16e-95 293
MS.gene052989.t1 MTR_1g099320 54.613 271 114 5 21 287 19 284 9.18e-94 281
MS.gene052989.t1 MTR_7g116850 49.662 296 140 6 11 301 35 326 2.37e-90 273
MS.gene052989.t1 MTR_7g116350 50.836 299 123 7 11 303 6 286 4.37e-88 281
MS.gene052989.t1 MTR_2g040870 79.618 157 31 1 17 172 13 169 2.13e-85 254
MS.gene052989.t1 MTR_2g102020 49.835 303 136 8 7 298 13 310 7.84e-84 257
MS.gene052989.t1 MTR_1g099350 49.815 271 125 6 21 288 17 279 1.20e-83 254
MS.gene052989.t1 MTR_2g040880 83.673 147 23 1 184 330 1 146 4.99e-83 248
MS.gene052989.t1 MTR_6g023340 47.552 286 141 8 21 301 21 302 2.59e-81 249
MS.gene052989.t1 MTR_8g467650 49.169 301 138 10 8 301 6 298 7.70e-81 248
MS.gene052989.t1 MTR_2g040890 62.286 175 62 3 1 172 1 174 1.74e-68 213
MS.gene052989.t1 MTR_2g040900 57.419 155 64 2 177 330 17 170 3.36e-54 175
MS.gene052989.t1 MTR_2g040850 57.616 151 55 2 1 143 1 150 4.89e-50 167
MS.gene052989.t1 MTR_2g040850 59.770 87 31 2 240 323 158 243 1.09e-23 97.8
MS.gene052989.t1 MTR_4g077310 41.053 95 50 3 205 299 3 91 6.32e-15 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052989.t1 AT5G24090 47.039 304 153 6 1 301 4 302 5.17e-90 271

Find 79 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCATGAACACGGTATTATT+TGG 0.228231 2.1:+49131518 None:intergenic
AACTTTCTTAGTGGTCAATT+TGG 0.254606 2.1:-49133037 MS.gene052989:CDS
TTGGCTTTCCTAAATGTCTT+TGG 0.269153 2.1:-49133253 MS.gene052989:CDS
TTCCTCCTCCAAAGACATTT+AGG 0.281897 2.1:+49133245 None:intergenic
ATAGTTGGAAGTTGGTTTAA+TGG 0.284816 2.1:+49131418 None:intergenic
GTCAAAATCAATACCATCTA+AGG 0.296854 2.1:+49132997 None:intergenic
CTTGGAAGTGTTACCTTAGA+TGG 0.298818 2.1:-49133010 MS.gene052989:CDS
AAGGAGGTACAAATCTTTAC+TGG 0.304361 2.1:-49132970 MS.gene052989:CDS
TGGGATAGATTTCATGATAA+AGG 0.305623 2.1:-49131380 MS.gene052989:CDS
ATTAAACCAACTTCCAACTA+TGG 0.306183 2.1:-49131416 MS.gene052989:CDS
AACACAAAATGGATAGAAAA+AGG 0.309689 2.1:-49133426 None:intergenic
AGGTGCCATCTCCTAGGTTT+TGG 0.325186 2.1:+49133317 None:intergenic
ACCAAAGGATCTCATTTCTA+AGG 0.326123 2.1:-49131450 MS.gene052989:CDS
GTGGTGGCATTGCCATCTAC+TGG 0.335903 2.1:-49133342 MS.gene052989:CDS
CTTTCGATCGGAGGTGCAAT+AGG 0.351560 2.1:-49133118 MS.gene052989:CDS
CTCCATACTAACTTTCTTAG+TGG 0.352431 2.1:-49133046 MS.gene052989:CDS
ATAAAACACTGTCAACAAAA+AGG 0.366978 2.1:-49133154 MS.gene052989:CDS
GACCCAAGTTGGAACTTTGC+AGG 0.370420 2.1:-49133220 MS.gene052989:CDS
TCTTAAAATCATGGAAAGAT+TGG 0.373901 2.1:-49131556 MS.gene052989:CDS
CTTGACAAAGCTATCAAAAC+TGG 0.380969 2.1:-49131659 MS.gene052989:CDS
ACCAAATAATACCGTGTTCA+TGG 0.382839 2.1:-49131519 MS.gene052989:CDS
GTAATCTGGCATAAAACATT+GGG 0.383173 2.1:+49131685 None:intergenic
TAATTACAAGATTGTACTCT+TGG 0.383216 2.1:-49133272 MS.gene052989:CDS
GACCACTAAGAAAGTTAGTA+TGG 0.384451 2.1:+49133044 None:intergenic
CTATGGAGGAATTATGCTTT+GGG 0.391332 2.1:-49131399 MS.gene052989:CDS
GCGTATAATATGATTTAATT+CGG 0.393756 2.1:+49131239 None:intergenic
ACTATGGAGGAATTATGCTT+TGG 0.402308 2.1:-49131400 MS.gene052989:CDS
ACCTTAGAAATGAGATCCTT+TGG 0.403961 2.1:+49131449 None:intergenic
CTACATTGCTCTTAAAATCA+TGG 0.423108 2.1:-49131565 MS.gene052989:CDS
TGATTACAGCTATCAGATAA+AGG 0.427044 2.1:-49131351 MS.gene052989:CDS
TGGTGGCATTGCCATCTACT+GGG 0.446566 2.1:-49133341 MS.gene052989:CDS
GCTTTCCTAAATGTCTTTGG+AGG 0.450110 2.1:-49133250 MS.gene052989:CDS
CAAGTTTCTGAGGCAATAGC+TGG 0.454724 2.1:-49131293 MS.gene052989:CDS
ACAATCTAAGACAACAAAAC+AGG 0.458920 2.1:-49132925 MS.gene052989:intron
AAGCATAATTCCTCCATAGT+TGG 0.460777 2.1:+49131403 None:intergenic
ATGTCAAGGTGCCATCTCCT+AGG 0.479456 2.1:+49133311 None:intergenic
CCACCACTAGGAGCTGCATT+AGG 0.480850 2.1:+49131482 None:intergenic
TTGCAGGTCATTGTGGTGAC+TGG 0.481375 2.1:-49133204 MS.gene052989:CDS
ATTCCTCCATAGTTGGAAGT+TGG 0.484513 2.1:+49131410 None:intergenic
TTTGTTGTCTTAGATTGTCA+AGG 0.485852 2.1:+49132930 None:intergenic
GCTTTGTCAAGGTAGTAATC+TGG 0.487955 2.1:+49131671 None:intergenic
TTCCTAAATGTCTTTGGAGG+AGG 0.495140 2.1:-49133247 MS.gene052989:CDS
TTTACTGGGATGACCTTGCT+AGG 0.501225 2.1:-49132955 MS.gene052989:CDS
TGACCTGCAAAGTTCCAACT+TGG 0.502084 2.1:+49133217 None:intergenic
CCAAATAATACCGTGTTCAT+GGG 0.512696 2.1:-49131518 MS.gene052989:CDS
AGTAATCTGGCATAAAACAT+TGG 0.515532 2.1:+49131684 None:intergenic
TTGGAAGTTGGTTTAATGGA+AGG 0.522478 2.1:+49131422 None:intergenic
GGAGCTGCATTAGGTGCTGC+TGG 0.526335 2.1:+49131491 None:intergenic
TGAAGATGCTTTGATAGTGA+AGG 0.540737 2.1:+49133366 None:intergenic
GAAGATGCTTTGATAGTGAA+GGG 0.554870 2.1:+49133367 None:intergenic
TTATATCATATTGACATGGA+GGG 0.560515 2.1:+49131600 None:intergenic
TATGATTTAATTCGGAAACA+TGG 0.564143 2.1:+49131247 None:intergenic
AGTGGTCAATTTGGTCCACT+TGG 0.566066 2.1:-49133028 MS.gene052989:CDS
TTACTGGGATGACCTTGCTA+GGG 0.587273 2.1:-49132954 MS.gene052989:CDS
AGGAGGTACAAATCTTTACT+GGG 0.587554 2.1:-49132969 MS.gene052989:CDS
TTAGAAATGAGATCCTTTGG+TGG 0.590140 2.1:+49131452 None:intergenic
GAGGAGGAAGAGACCCAAGT+TGG 0.591012 2.1:-49133231 MS.gene052989:CDS
GATTGTCAAGGTCCCTAGCA+AGG 0.595500 2.1:+49132942 None:intergenic
TTTATATCATATTGACATGG+AGG 0.598528 2.1:+49131599 None:intergenic
ATCTACTGGGGCCAAAACCT+AGG 0.601014 2.1:-49133328 MS.gene052989:CDS
TTGACATCAACATGTAACAC+TGG 0.610391 2.1:-49133295 MS.gene052989:CDS
TGCTGGTAGTCCCATGAACA+CGG 0.611631 2.1:+49131508 None:intergenic
ATCAAAGCATCTTCAAGTGG+TGG 0.612068 2.1:-49133358 MS.gene052989:CDS
GACCTGCAAAGTTCCAACTT+GGG 0.612156 2.1:+49133218 None:intergenic
TGGGGCCAAAACCTAGGAGA+TGG 0.618215 2.1:-49133322 MS.gene052989:CDS
TTCTGGTGAGCTAAGAGTGT+AGG 0.618334 2.1:+49133093 None:intergenic
TGGTGGTTATATACCACCAA+AGG 0.626041 2.1:-49131465 MS.gene052989:CDS
AAACCAACTTCCAACTATGG+AGG 0.642148 2.1:-49131413 MS.gene052989:CDS
ACTATCAAAGCATCTTCAAG+TGG 0.643897 2.1:-49133361 MS.gene052989:CDS
TGGAACTTTGCAGGTCATTG+TGG 0.646397 2.1:-49133211 MS.gene052989:CDS
GCACCTAATGCAGCTCCTAG+TGG 0.656531 2.1:-49131485 MS.gene052989:CDS
AGTGTTACATGTTGATGTCA+AGG 0.656681 2.1:+49133297 None:intergenic
GGTGGCATTGCCATCTACTG+GGG 0.662894 2.1:-49133340 MS.gene052989:CDS
CCTAATGCAGCTCCTAGTGG+TGG 0.665138 2.1:-49131482 MS.gene052989:CDS
CACTAAGAAAGTTAGTATGG+AGG 0.672810 2.1:+49133047 None:intergenic
GGTGGTATATAACCACCACT+AGG 0.688135 2.1:+49131470 None:intergenic
TAATCTGGCATAAAACATTG+GGG 0.688163 2.1:+49131686 None:intergenic
ATATTGTTAAGACTAACAGA+AGG 0.710230 2.1:+49133392 None:intergenic
TCTAAGGTAACACTTCCAAG+TGG 0.714737 2.1:+49133013 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATATATATATATATTTT+TGG + chr2.1:49131992-49131973 None:intergenic 0.0%
!!! AAATATATATATATATTTTT+GGG + chr2.1:49131993-49131974 None:intergenic 0.0%
!! TAATAAATATTTACCATTTA+TGG - chr2.1:49132602-49132621 MS.gene052989:intron 10.0%
!! TAATTTCATATTATGAATTA+GGG + chr2.1:49132327-49132346 None:intergenic 10.0%
!! TTAATTTCATATTATGAATT+AGG + chr2.1:49132328-49132347 None:intergenic 10.0%
!!! AATGAAATGATTTTTTTTTA+TGG + chr2.1:49132837-49132856 None:intergenic 10.0%
!!! ATGAAATGATTTTTTTTTAT+GGG + chr2.1:49132836-49132855 None:intergenic 10.0%
!!! TATTTTTCTTTGAAAAAATA+TGG + chr2.1:49132164-49132183 None:intergenic 10.0%
!!! TTTTCAAAGAAAAATATGTA+TGG - chr2.1:49132168-49132187 MS.gene052989:intron 15.0%
!!! TTTTTTATATCATATTGACA+TGG + chr2.1:49133078-49133097 None:intergenic 15.0%
!! AAAAAATATGGTTGTTCATT+AGG + chr2.1:49132152-49132171 None:intergenic 20.0%
!! AAATATAATGTGAGTATAAG+AGG - chr2.1:49132223-49132242 MS.gene052989:intron 20.0%
!! AATTTCATTTAACATGTTGT+AGG + chr2.1:49132447-49132466 None:intergenic 20.0%
!! AGCATAATGCTATAATATAT+TGG - chr2.1:49132658-49132677 MS.gene052989:intron 20.0%
!! ATATTATGAATTAGGGTTTA+GGG + chr2.1:49132320-49132339 None:intergenic 20.0%
!! ATATTCACATTATACACTTT+AGG + chr2.1:49132260-49132279 None:intergenic 20.0%
!! GCATAATGCTATAATATATT+GGG - chr2.1:49132659-49132678 MS.gene052989:intron 20.0%
!! TAAAGAAATATATCATGACA+TGG + chr2.1:49132008-49132027 None:intergenic 20.0%
!!! AAAAGGTTGATTTGTTAATT+AGG + chr2.1:49132932-49132951 None:intergenic 20.0%
!!! AAAGGTTGATTTGTTAATTA+GGG + chr2.1:49132931-49132950 None:intergenic 20.0%
!!! AACTTATTGATTTATGAAAC+AGG + chr2.1:49132752-49132771 None:intergenic 20.0%
!!! ATATATATATTTTTGGGATG+TGG + chr2.1:49131966-49131985 None:intergenic 20.0%
!!! TTTTTTATAAAATTGGGATG+TGG + chr2.1:49131921-49131940 None:intergenic 20.0%
! ATAAAACACTGTCAACAAAA+AGG - chr2.1:49131517-49131536 MS.gene052989:CDS 25.0%
! ATATTGTTAAGACTAACAGA+AGG + chr2.1:49131282-49131301 None:intergenic 25.0%
! ATGTTAAGGATTTCCATAAA+TGG + chr2.1:49132618-49132637 None:intergenic 25.0%
! CATATTATGAATTAGGGTTT+AGG + chr2.1:49132321-49132340 None:intergenic 25.0%
! CTAAACAAAAATTCCACTTT+AGG + chr2.1:49132529-49132548 None:intergenic 25.0%
! TAATATATTGGGAGTTTCTA+CGG - chr2.1:49132670-49132689 MS.gene052989:intron 25.0%
! TAATTACAAGATTGTACTCT+TGG - chr2.1:49131399-49131418 MS.gene052989:CDS 25.0%
! TATGAGAGAAAGTAGAATAT+AGG - chr2.1:49132277-49132296 MS.gene052989:intron 25.0%
! TCTTAAAATCATGGAAAGAT+TGG - chr2.1:49133115-49133134 MS.gene052989:CDS 25.0%
! TTAGGATGTTAAATAAAACG+TGG + chr2.1:49132134-49132153 None:intergenic 25.0%
! TTATATCATATTGACATGGA+GGG + chr2.1:49133074-49133093 None:intergenic 25.0%
! TTTATATCATATTGACATGG+AGG + chr2.1:49133075-49133094 None:intergenic 25.0%
!!! CTAAAGTGGAATTTTTGTTT+AGG - chr2.1:49132527-49132546 MS.gene052989:intron 25.0%
!!! TAGGTTTAGTTTTTGAGAAT+TGG + chr2.1:49132428-49132447 None:intergenic 25.0%
!!! TTGTTGACAGTGTTTTATTT+CGG + chr2.1:49131515-49131534 None:intergenic 25.0%
!!! TTTTGAGAATTGGAGAATTA+GGG + chr2.1:49132418-49132437 None:intergenic 25.0%
!!! TTTTTGAGAATTGGAGAATT+AGG + chr2.1:49132419-49132438 None:intergenic 25.0%
AACTTTCTTAGTGGTCAATT+TGG - chr2.1:49131634-49131653 MS.gene052989:CDS 30.0%
ACCAGTACACCTTAATTTAA+AGG + chr2.1:49132700-49132719 None:intergenic 30.0%
ACCTTTAAATTAAGGTGTAC+CGG - chr2.1:49132696-49132715 MS.gene052989:intron 30.0%
ACCTTTAAATTAAGGTGTAC+TGG - chr2.1:49132696-49132715 MS.gene052989:intron 30.0%
ACTGGTACACCTTTAAATTA+AGG - chr2.1:49132714-49132733 MS.gene052989:intron 30.0%
AGTAATCTGGCATAAAACAT+TGG + chr2.1:49132990-49133009 None:intergenic 30.0%
ATTAAACCAACTTCCAACTA+TGG - chr2.1:49133255-49133274 MS.gene052989:CDS 30.0%
CTACATTGCTCTTAAAATCA+TGG - chr2.1:49133106-49133125 MS.gene052989:CDS 30.0%
GTAATCTGGCATAAAACATT+GGG + chr2.1:49132989-49133008 None:intergenic 30.0%
GTCAAAATCAATACCATCTA+AGG + chr2.1:49131677-49131696 None:intergenic 30.0%
TAATCTGGCATAAAACATTG+GGG + chr2.1:49132988-49133007 None:intergenic 30.0%
TACGGTACACCTTTAAATTA+AGG - chr2.1:49132688-49132707 MS.gene052989:intron 30.0%
TATGCTAACTTGAGTTCTTA+AGG + chr2.1:49132644-49132663 None:intergenic 30.0%
TGATTACAGCTATCAGATAA+AGG - chr2.1:49133320-49133339 MS.gene052989:CDS 30.0%
TGGGATAGATTTCATGATAA+AGG - chr2.1:49133291-49133310 MS.gene052989:CDS 30.0%
! ACAATCTAAGACAACAAAAC+AGG - chr2.1:49131746-49131765 MS.gene052989:intron 30.0%
! ATAGTTGGAAGTTGGTTTAA+TGG + chr2.1:49133256-49133275 None:intergenic 30.0%
! GTCAAAGTTTTACTTTCGAT+CGG - chr2.1:49131541-49131560 MS.gene052989:CDS 30.0%
! TTTGTTGTCTTAGATTGTCA+AGG + chr2.1:49131744-49131763 None:intergenic 30.0%
!! ATTGATTTTGACATTGAAGG+AGG - chr2.1:49131685-49131704 MS.gene052989:CDS 30.0%
!! TATAGTTTCAAGTTGTACAG+CGG + chr2.1:49131830-49131849 None:intergenic 30.0%
!!! GGTATTGATTTTGACATTGA+AGG - chr2.1:49131682-49131701 MS.gene052989:CDS 30.0%
!!! GTTATGTTGTTGTTGTTTTG+TGG + chr2.1:49132370-49132389 None:intergenic 30.0%
!!! TGTTGACAGTGTTTTATTTC+GGG + chr2.1:49131514-49131533 None:intergenic 30.0%
!!! TTTTAAGACACAAGTTTCTG+AGG - chr2.1:49133368-49133387 MS.gene052989:CDS 30.0%
AAGCATAATTCCTCCATAGT+TGG + chr2.1:49133271-49133290 None:intergenic 35.0%
AAGTACCTGCAAGAGATAAA+AGG + chr2.1:49132949-49132968 None:intergenic 35.0%
ACCAAAGGATCTCATTTCTA+AGG - chr2.1:49133221-49133240 MS.gene052989:CDS 35.0%
ACCAAATAATACCGTGTTCA+TGG - chr2.1:49133152-49133171 MS.gene052989:CDS 35.0%
ACCGGTACACCTTAATTTAA+AGG + chr2.1:49132726-49132745 None:intergenic 35.0%
ACCTTAGAAATGAGATCCTT+TGG + chr2.1:49133225-49133244 None:intergenic 35.0%
ACTATGGAGGAATTATGCTT+TGG - chr2.1:49133271-49133290 MS.gene052989:CDS 35.0%
AGTGTTACATGTTGATGTCA+AGG + chr2.1:49131377-49131396 None:intergenic 35.0%
AGTTCTTAAGGCACATGTTA+AGG + chr2.1:49132632-49132651 None:intergenic 35.0%
CACTAAGAAAGTTAGTATGG+AGG + chr2.1:49131627-49131646 None:intergenic 35.0%
CCAAATAATACCGTGTTCAT+GGG - chr2.1:49133153-49133172 MS.gene052989:CDS 35.0%
CTATGGAGGAATTATGCTTT+GGG - chr2.1:49133272-49133291 MS.gene052989:CDS 35.0%
CTCCATACTAACTTTCTTAG+TGG - chr2.1:49131625-49131644 MS.gene052989:CDS 35.0%
CTTATTCTTTACGCACACAA+AGG + chr2.1:49132056-49132075 None:intergenic 35.0%
CTTGACAAAGCTATCAAAAC+TGG - chr2.1:49133012-49133031 MS.gene052989:CDS 35.0%
CTTTGTGTGCGTAAAGAATA+AGG - chr2.1:49132054-49132073 MS.gene052989:intron 35.0%
GACCACTAAGAAAGTTAGTA+TGG + chr2.1:49131630-49131649 None:intergenic 35.0%
GATTTATGAAACAGGTGTAC+CGG + chr2.1:49132744-49132763 None:intergenic 35.0%
GTTAAATAAAACGTGGTGTC+TGG + chr2.1:49132127-49132146 None:intergenic 35.0%
TAGGTTCCTTAACAAGGTAA+GGG + chr2.1:49132510-49132529 None:intergenic 35.0%
TTAGAAATGAGATCCTTTGG+TGG + chr2.1:49133222-49133241 None:intergenic 35.0%
TTAGGTTCCTTAACAAGGTA+AGG + chr2.1:49132511-49132530 None:intergenic 35.0%
TTGACATCAACATGTAACAC+TGG - chr2.1:49131376-49131395 MS.gene052989:CDS 35.0%
! AAAGTTTTACTTTCGATCGG+AGG - chr2.1:49131544-49131563 MS.gene052989:CDS 35.0%
! AAGGAGGTACAAATCTTTAC+TGG - chr2.1:49131701-49131720 MS.gene052989:CDS 35.0%
! ACTATCAAAGCATCTTCAAG+TGG - chr2.1:49131310-49131329 MS.gene052989:CDS 35.0%
! AGGAGGTACAAATCTTTACT+GGG - chr2.1:49131702-49131721 MS.gene052989:CDS 35.0%
! ATCAACCTTTTATCTCTTGC+AGG - chr2.1:49132941-49132960 MS.gene052989:CDS 35.0%
! GAATTAGGGTTTAGGGTTTA+GGG + chr2.1:49132313-49132332 None:intergenic 35.0%
! TGAATTAGGGTTTAGGGTTT+AGG + chr2.1:49132314-49132333 None:intergenic 35.0%
! TTGGAAGTTGGTTTAATGGA+AGG + chr2.1:49133252-49133271 None:intergenic 35.0%
! TTGGCTTTCCTAAATGTCTT+TGG - chr2.1:49131418-49131437 MS.gene052989:CDS 35.0%
!! GAAGATGCTTTGATAGTGAA+GGG + chr2.1:49131307-49131326 None:intergenic 35.0%
!! TGAAGATGCTTTGATAGTGA+AGG + chr2.1:49131308-49131327 None:intergenic 35.0%
!!! CAGTTTTGATAGCTTTGTCA+AGG + chr2.1:49133014-49133033 None:intergenic 35.0%
!!! GCAACATTTTTAGCATCTTC+TGG + chr2.1:49131598-49131617 None:intergenic 35.0%
AAACCAACTTCCAACTATGG+AGG - chr2.1:49133258-49133277 MS.gene052989:CDS 40.0%
AAAGAAACTGGCATATGGGT+TGG - chr2.1:49132091-49132110 MS.gene052989:intron 40.0%
AACCCATATGCCAGTTTCTT+TGG + chr2.1:49132092-49132111 None:intergenic 40.0%
AAGAAACTGGCATATGGGTT+GGG - chr2.1:49132092-49132111 MS.gene052989:intron 40.0%
AGACCAAAGAAACTGGCATA+TGG - chr2.1:49132086-49132105 MS.gene052989:intron 40.0%
ATTCCTCCATAGTTGGAAGT+TGG + chr2.1:49133264-49133283 None:intergenic 40.0%
CCCATGAACACGGTATTATT+TGG + chr2.1:49133156-49133175 None:intergenic 40.0%
CCTTGTTAAGGAACCTAAAG+TGG - chr2.1:49132513-49132532 MS.gene052989:intron 40.0%
GACCAAAGAAACTGGCATAT+GGG - chr2.1:49132087-49132106 MS.gene052989:intron 40.0%
GCGTAAAGAATAAGGTTGCT+TGG - chr2.1:49132062-49132081 MS.gene052989:intron 40.0%
GCTTTCCTAAATGTCTTTGG+AGG - chr2.1:49131421-49131440 MS.gene052989:CDS 40.0%
GCTTTGTCAAGGTAGTAATC+TGG + chr2.1:49133003-49133022 None:intergenic 40.0%
TGGTGGTTATATACCACCAA+AGG - chr2.1:49133206-49133225 MS.gene052989:CDS 40.0%
TTCCTCCTCCAAAGACATTT+AGG + chr2.1:49131429-49131448 None:intergenic 40.0%
TTCCTTAACAAGGTAAGGGT+GGG + chr2.1:49132506-49132525 None:intergenic 40.0%
! ATCAAAGCATCTTCAAGTGG+TGG - chr2.1:49131313-49131332 MS.gene052989:CDS 40.0%
! CAGGTACTTTTACTTGTCTG+CGG - chr2.1:49132960-49132979 MS.gene052989:CDS 40.0%
! CCACTTTAGGTTCCTTAACA+AGG + chr2.1:49132516-49132535 None:intergenic 40.0%
! TCTAAGGTAACACTTCCAAG+TGG + chr2.1:49131661-49131680 None:intergenic 40.0%
! TTCCTAAATGTCTTTGGAGG+AGG - chr2.1:49131424-49131443 MS.gene052989:CDS 40.0%
!! CTTGGAAGTGTTACCTTAGA+TGG - chr2.1:49131661-49131680 MS.gene052989:CDS 40.0%
AGTGGTCAATTTGGTCCACT+TGG - chr2.1:49131643-49131662 MS.gene052989:CDS 45.0%
GACCTGCAAAGTTCCAACTT+GGG + chr2.1:49131456-49131475 None:intergenic 45.0%
GCTTGGTAGACCAAAGAAAC+TGG - chr2.1:49132079-49132098 MS.gene052989:intron 45.0%
GGTGGTATATAACCACCACT+AGG + chr2.1:49133204-49133223 None:intergenic 45.0%
GTTCCTTAACAAGGTAAGGG+TGG + chr2.1:49132507-49132526 None:intergenic 45.0%
TGACCTGCAAAGTTCCAACT+TGG + chr2.1:49131457-49131476 None:intergenic 45.0%
TGGAACTTTGCAGGTCATTG+TGG - chr2.1:49131460-49131479 MS.gene052989:CDS 45.0%
TTACTGGGATGACCTTGCTA+GGG - chr2.1:49131717-49131736 MS.gene052989:intron 45.0%
TTTACTGGGATGACCTTGCT+AGG - chr2.1:49131716-49131735 MS.gene052989:intron 45.0%
! AAAACGTGGTGTCTGGTCTT+TGG + chr2.1:49132120-49132139 None:intergenic 45.0%
! TTCTGGTGAGCTAAGAGTGT+AGG + chr2.1:49131581-49131600 None:intergenic 45.0%
!! CAAGTTTCTGAGGCAATAGC+TGG - chr2.1:49133378-49133397 MS.gene052989:CDS 45.0%
!! CGGGTTCGAGTTTTGTACAA+GGG + chr2.1:49131495-49131514 None:intergenic 45.0%
!! TCGGGTTCGAGTTTTGTACA+AGG + chr2.1:49131496-49131515 None:intergenic 45.0%
!!! AAATATCTTTTTTATAAAAT+TGG + chr2.1:49131928-49131947 None:intergenic 5.0%
!!! AATATCTTTTTTATAAAATT+GGG + chr2.1:49131927-49131946 None:intergenic 5.0%
AGGCACGTGCAACACAGATT+TGG + chr2.1:49132036-49132055 None:intergenic 50.0%
ATCTACTGGGGCCAAAACCT+AGG - chr2.1:49131343-49131362 MS.gene052989:CDS 50.0%
GATTGTCAAGGTCCCTAGCA+AGG + chr2.1:49131732-49131751 None:intergenic 50.0%
GGCACGTGCAACACAGATTT+GGG + chr2.1:49132035-49132054 None:intergenic 50.0%
GTCCCACCCTTACCTTGTTA+AGG - chr2.1:49132501-49132520 MS.gene052989:intron 50.0%
TGCTGGTAGTCCCATGAACA+CGG + chr2.1:49133166-49133185 None:intergenic 50.0%
TGGTGGCATTGCCATCTACT+GGG - chr2.1:49131330-49131349 MS.gene052989:CDS 50.0%
TTGCAGGTCATTGTGGTGAC+TGG - chr2.1:49131467-49131486 MS.gene052989:CDS 50.0%
! ATGTCAAGGTGCCATCTCCT+AGG + chr2.1:49131363-49131382 None:intergenic 50.0%
! CTTTCGATCGGAGGTGCAAT+AGG - chr2.1:49131553-49131572 MS.gene052989:CDS 50.0%
! GACCCAAGTTGGAACTTTGC+AGG - chr2.1:49131451-49131470 MS.gene052989:CDS 50.0%
!! AGGTGCCATCTCCTAGGTTT+TGG + chr2.1:49131357-49131376 None:intergenic 50.0%
!! TAGGTTTTGGCCCCAGTAGA+TGG + chr2.1:49131344-49131363 None:intergenic 50.0%
CCACCACTAGGAGCTGCATT+AGG + chr2.1:49133192-49133211 None:intergenic 55.0%
CCTAATGCAGCTCCTAGTGG+TGG - chr2.1:49133189-49133208 MS.gene052989:CDS 55.0%
GAGGAGGAAGAGACCCAAGT+TGG - chr2.1:49131440-49131459 MS.gene052989:CDS 55.0%
GCACCTAATGCAGCTCCTAG+TGG - chr2.1:49133186-49133205 MS.gene052989:CDS 55.0%
GGTGGCATTGCCATCTACTG+GGG - chr2.1:49131331-49131350 MS.gene052989:CDS 55.0%
GTGGTGGCATTGCCATCTAC+TGG - chr2.1:49131329-49131348 MS.gene052989:CDS 55.0%
TGGGGCCAAAACCTAGGAGA+TGG - chr2.1:49131349-49131368 MS.gene052989:CDS 55.0%
! GGAGCTGCATTAGGTGCTGC+TGG + chr2.1:49133183-49133202 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 49131253 49133440 49131253 ID=MS.gene052989
chr2.1 mRNA 49131253 49133440 49131253 ID=MS.gene052989.t1;Parent=MS.gene052989
chr2.1 exon 49132926 49133440 49132926 ID=MS.gene052989.t1.exon1;Parent=MS.gene052989.t1
chr2.1 CDS 49132926 49133440 49132926 ID=cds.MS.gene052989.t1;Parent=MS.gene052989.t1
chr2.1 exon 49131253 49131730 49131253 ID=MS.gene052989.t1.exon2;Parent=MS.gene052989.t1
chr2.1 CDS 49131253 49131730 49131253 ID=cds.MS.gene052989.t1;Parent=MS.gene052989.t1
Gene Sequence

>MS.gene052989

ATGGATAGAAAAAGGCAAGCATTGCTCCTTCTGTTAGTCTTAACAATATTTCCCTTCACTATCAAAGCATCTTCAAGTGGTGGCATTGCCATCTACTGGGGCCAAAACCTAGGAGATGGCACCTTGACATCAACATGTAACACTGGTAATTACAAGATTGTACTCTTGGCTTTCCTAAATGTCTTTGGAGGAGGAAGAGACCCAAGTTGGAACTTTGCAGGTCATTGTGGTGACTGGAGCCCTTGTACAAAACTCGAACCCGAAATAAAACACTGTCAACAAAAAGGTGTCAAAGTTTTACTTTCGATCGGAGGTGCAATAGGATCCTACACTCTTAGCTCACCAGAAGATGCTAAAAATGTTGCTGATTACCTCCATACTAACTTTCTTAGTGGTCAATTTGGTCCACTTGGAAGTGTTACCTTAGATGGTATTGATTTTGACATTGAAGGAGGTACAAATCTTTACTGGGATGACCTTGCTAGGGACCTTGACAATCTAAGACAACAAAACAGGTAATATTTTTTGAATGACAAGTTTTAGCATGATAGTACTAGCTAGTAGTACAACTTGACCGCTGTACAACTTGAAACTATAAAACTAAAAATATATATGTAAAATAAAGTTATAAAAAAAAAAAATGAAGATGATGAAGAAAAAGTTGACCACATCCCAATTTTATAAAAAAGATATTTTTTTTTTCTTCTTGACCACATCCCAAAAATATATATATATATTTTTTTCTGATATCTCCATGTCATGATATATTTCTTTATGAGCCCAAATCTGTGTTGCACGTGCCTTTGTGTGCGTAAAGAATAAGGTTGCTTGGTAGACCAAAGAAACTGGCATATGGGTTGGGAACCAAAGACCAGACACCACGTTTTATTTAACATCCTAATGAACAACCATATTTTTTCAAAGAAAAATATGTATGGACTCGAAAATTATAGCAATAAAGAGAGAGAAAAAATATAATGTGAGTATAAGAGGTAATTAAATCACCTAAAGTGTATAATGTGAATATGAGAGAAAGTAGAATATAGGAAAATGTTAACCCTAAACCCTAAACCCTAATTCATAATATGAAATTAACAACAACAATCATCAACAACCACAAAACAACAACAACATAACATAAATCATCAATTATCACTCTTAACCCTAATTCTCCAATTCTCAAAAACTAAACCTACAACATGTTAAATGAAATTTTCAGAATCATAGACTCAAGATTATTGAATGATAGTCCCACCCTTACCTTGTTAAGGAACCTAAAGTGGAATTTTTGTTTAGGAAATTGTGTAAATTTATTATTATAATTATAAAGATTGAAAATTAATGTTTCATAATAAATATTTACCATTTATGGAAATCCTTAACATGTGCCTTAAGAACTCAAGTTAGCATAATGCTATAATATATTGGGAGTTTCTACGGTACACCTTTAAATTAAGGTGTACTGGTACACCTTTAAATTAAGGTGTACCGGTACACCTGTTTCATAAATCAATAAGTTAACGATAATTTTTATGTAATAAAGAGATATTTATCGACTTTTATATTTTAGAAAATATTATCCCATAAAAAAAAATCATTTCATTCTTTATAAGAATTATACTAATTTTTTTAATATTTTATTGAAAAAATAATCAATATTTCTTCTTTGCTTACACCCTAATTAACAAATCAACCTTTTATCTCTTGCAGGTACTTTTACTTGTCTGCGGCACCCCAATGTTTTATGCCAGATTACTACCTTGACAAAGCTATCAAAACTGGCTTGTTTGATTATGTACTTGTTCAATTCTACAATAACCCTCCATGTCAATATGATATAAAAAACTCAGATGCTACATTGCTCTTAAAATCATGGAAAGATTGGACATCTTTAGTTCTACCAAATAATACCGTGTTCATGGGACTACCAGCAGCACCTAATGCAGCTCCTAGTGGTGGTTATATACCACCAAAGGATCTCATTTCTAAGGTTCTTCCTTCCATTAAACCAACTTCCAACTATGGAGGAATTATGCTTTGGGATAGATTTCATGATAAAGGAAATAATGATTACAGCTATCAGATAAAGGAGCATGTCAAACGATCTGTTCTTCGTTTTAAGACACAAGTTTCTGAGGCAATAGCTGGATGTATCTCAGCAGCTTTGAACTCCATGTTTCCGAATTAA
Protein sequence

>MS.gene052989.t1

MDRKRQALLLLLVLTIFPFTIKASSSGGIAIYWGQNLGDGTLTSTCNTGNYKIVLLAFLNVFGGGRDPSWNFAGHCGDWSPCTKLEPEIKHCQQKGVKVLLSIGGAIGSYTLSSPEDAKNVADYLHTNFLSGQFGPLGSVTLDGIDFDIEGGTNLYWDDLARDLDNLRQQNRYFYLSAAPQCFMPDYYLDKAIKTGLFDYVLVQFYNNPPCQYDIKNSDATLLLKSWKDWTSLVLPNNTVFMGLPAAPNAAPSGGYIPPKDLISKVLPSIKPTSNYGGIMLWDRFHDKGNNDYSYQIKEHVKRSVLRFKTQVSEAIAGCISAALNSMFPN