Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051311.t1 | XP_003593643.1 | 95.9 | 341 | 13 | 1 | 1 | 340 | 1 | 341 | 4.20E-164 | 587.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051311.t1 | Q9D832 | 39.2 | 344 | 185 | 7 | 1 | 337 | 1 | 327 | 2.9e-57 | 223.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051311.t1 | A2Q503 | 95.9 | 341 | 13 | 1 | 1 | 340 | 1 | 341 | 3.0e-164 | 587.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051311 | MS.gene93973 | 0.801812 | 7.55E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051311.t1 | MTR_2g014480 | 95.894 | 341 | 13 | 1 | 1 | 340 | 1 | 341 | 0.0 | 679 |
| MS.gene051311.t1 | MTR_2g014470 | 67.251 | 342 | 92 | 7 | 1 | 335 | 1 | 329 | 4.52e-147 | 418 |
| MS.gene051311.t1 | MTR_4g078850 | 62.356 | 348 | 110 | 7 | 1 | 338 | 1 | 337 | 2.74e-142 | 406 |
| MS.gene051311.t1 | MTR_4g015840 | 60.058 | 343 | 121 | 6 | 1 | 338 | 1 | 332 | 7.89e-133 | 382 |
| MS.gene051311.t1 | MTR_2g090705 | 58.721 | 344 | 120 | 5 | 1 | 338 | 1 | 328 | 5.99e-129 | 372 |
| MS.gene051311.t1 | MTR_3g108020 | 50.888 | 338 | 141 | 8 | 1 | 335 | 1 | 316 | 1.73e-103 | 307 |
| MS.gene051311.t1 | MTR_4g015840 | 58.704 | 247 | 86 | 6 | 97 | 338 | 20 | 255 | 3.27e-84 | 256 |
| MS.gene051311.t1 | MTR_5g037880 | 48.214 | 168 | 83 | 2 | 169 | 335 | 101 | 265 | 1.67e-50 | 169 |
| MS.gene051311.t1 | MTR_5g037880 | 55.556 | 72 | 25 | 1 | 4 | 68 | 5 | 76 | 4.02e-17 | 80.5 |
| MS.gene051311.t1 | MTR_3g437840 | 51.111 | 135 | 63 | 2 | 204 | 338 | 24 | 155 | 1.33e-41 | 142 |
| MS.gene051311.t1 | MTR_8g006430 | 31.818 | 352 | 196 | 11 | 5 | 331 | 15 | 347 | 5.93e-38 | 140 |
| MS.gene051311.t1 | MTR_2g006890 | 44.000 | 175 | 93 | 3 | 163 | 335 | 195 | 366 | 4.28e-37 | 137 |
| MS.gene051311.t1 | MTR_3g088140 | 42.353 | 170 | 93 | 4 | 163 | 330 | 173 | 339 | 4.97e-36 | 134 |
| MS.gene051311.t1 | MTR_7g109340 | 30.145 | 345 | 198 | 10 | 5 | 339 | 27 | 338 | 2.89e-33 | 126 |
| MS.gene051311.t1 | MTR_3g437850 | 33.171 | 205 | 81 | 5 | 3 | 194 | 1 | 162 | 9.49e-25 | 99.0 |
| MS.gene051311.t1 | MTR_3g087030 | 25.770 | 357 | 219 | 12 | 4 | 335 | 82 | 417 | 1.96e-21 | 94.7 |
| MS.gene051311.t1 | MTR_2g087660 | 35.294 | 136 | 83 | 3 | 199 | 332 | 214 | 346 | 1.13e-19 | 89.7 |
| MS.gene051311.t1 | MTR_2g087660 | 60.563 | 71 | 23 | 1 | 5 | 75 | 14 | 79 | 2.65e-12 | 67.8 |
| MS.gene051311.t1 | MTR_7g101070 | 58.824 | 68 | 28 | 0 | 4 | 71 | 358 | 425 | 1.81e-19 | 89.4 |
| MS.gene051311.t1 | MTR_4g050420 | 35.294 | 136 | 83 | 3 | 199 | 332 | 212 | 344 | 4.32e-19 | 87.8 |
| MS.gene051311.t1 | MTR_4g050420 | 59.155 | 71 | 24 | 1 | 5 | 75 | 14 | 79 | 4.63e-11 | 63.9 |
| MS.gene051311.t1 | MTR_2g104030 | 53.012 | 83 | 35 | 2 | 4 | 86 | 70 | 148 | 7.79e-17 | 81.6 |
| MS.gene051311.t1 | MTR_3g437360 | 50.685 | 73 | 36 | 0 | 3 | 75 | 4 | 76 | 9.76e-17 | 80.5 |
| MS.gene051311.t1 | MTR_5g065860 | 56.250 | 64 | 27 | 1 | 4 | 67 | 48 | 110 | 3.24e-16 | 75.1 |
| MS.gene051311.t1 | MTR_7g112360 | 48.485 | 66 | 31 | 1 | 5 | 67 | 17 | 82 | 2.37e-15 | 73.2 |
| MS.gene051311.t1 | MTR_7g112360 | 48.485 | 66 | 31 | 1 | 5 | 67 | 17 | 82 | 2.63e-15 | 71.6 |
| MS.gene051311.t1 | MTR_8g022310 | 47.826 | 69 | 31 | 1 | 4 | 67 | 10 | 78 | 2.73e-15 | 74.3 |
| MS.gene051311.t1 | MTR_8g022310 | 47.826 | 69 | 31 | 1 | 4 | 67 | 10 | 78 | 2.94e-15 | 73.9 |
| MS.gene051311.t1 | MTR_8g022310 | 47.826 | 69 | 31 | 1 | 4 | 67 | 10 | 78 | 3.74e-15 | 73.6 |
| MS.gene051311.t1 | MTR_8g022310 | 47.826 | 69 | 31 | 1 | 4 | 67 | 10 | 78 | 4.16e-15 | 73.9 |
| MS.gene051311.t1 | MTR_4g085070 | 51.667 | 60 | 26 | 1 | 11 | 67 | 19 | 78 | 4.12e-14 | 69.3 |
| MS.gene051311.t1 | MTR_6g027110 | 44.928 | 69 | 34 | 1 | 3 | 67 | 1 | 69 | 4.25e-14 | 69.3 |
| MS.gene051311.t1 | MTR_1g029460 | 46.667 | 75 | 39 | 1 | 3 | 77 | 5 | 78 | 5.04e-14 | 72.8 |
| MS.gene051311.t1 | MTR_3g027580 | 49.315 | 73 | 36 | 1 | 4 | 76 | 89 | 160 | 7.00e-14 | 72.4 |
| MS.gene051311.t1 | MTR_5g065160 | 40.000 | 115 | 53 | 4 | 4 | 112 | 83 | 187 | 7.14e-14 | 72.4 |
| MS.gene051311.t1 | MTR_5g065160 | 40.000 | 115 | 53 | 4 | 4 | 112 | 82 | 186 | 7.45e-14 | 72.4 |
| MS.gene051311.t1 | MTR_5g012530 | 44.156 | 77 | 41 | 1 | 4 | 78 | 12 | 88 | 7.91e-14 | 72.8 |
| MS.gene051311.t1 | MTR_5g065160 | 40.000 | 115 | 53 | 4 | 4 | 112 | 76 | 180 | 7.92e-14 | 72.4 |
| MS.gene051311.t1 | MTR_1g110310 | 53.125 | 64 | 29 | 1 | 4 | 67 | 16 | 78 | 8.55e-14 | 72.4 |
| MS.gene051311.t1 | MTR_5g065160 | 40.000 | 115 | 53 | 4 | 4 | 112 | 83 | 187 | 8.88e-14 | 72.4 |
| MS.gene051311.t1 | MTR_6g027030 | 44.928 | 69 | 34 | 1 | 3 | 67 | 1 | 69 | 3.88e-13 | 68.2 |
| MS.gene051311.t1 | MTR_3g100330 | 49.254 | 67 | 31 | 2 | 3 | 68 | 68 | 132 | 3.89e-13 | 68.6 |
| MS.gene051311.t1 | MTR_2g087660 | 38.462 | 91 | 53 | 2 | 199 | 289 | 214 | 301 | 7.33e-13 | 68.9 |
| MS.gene051311.t1 | MTR_2g087660 | 60.563 | 71 | 23 | 1 | 5 | 75 | 14 | 79 | 1.42e-12 | 68.2 |
| MS.gene051311.t1 | MTR_4g023470 | 46.053 | 76 | 40 | 1 | 1 | 76 | 83 | 157 | 9.71e-13 | 68.9 |
| MS.gene051311.t1 | MTR_5g035770 | 53.125 | 64 | 29 | 1 | 4 | 67 | 25 | 87 | 1.37e-12 | 68.6 |
| MS.gene051311.t1 | MTR_7g069480 | 49.254 | 67 | 32 | 1 | 3 | 69 | 26 | 90 | 1.89e-12 | 68.6 |
| MS.gene051311.t1 | MTR_1g029470 | 45.946 | 74 | 39 | 1 | 4 | 77 | 6 | 78 | 2.03e-12 | 67.8 |
| MS.gene051311.t1 | MTR_7g092380 | 29.834 | 181 | 111 | 7 | 6 | 176 | 24 | 198 | 3.14e-12 | 66.6 |
| MS.gene051311.t1 | MTR_6g026940 | 42.029 | 69 | 36 | 1 | 3 | 67 | 1 | 69 | 4.63e-12 | 64.3 |
| MS.gene051311.t1 | MTR_1g052110 | 41.573 | 89 | 45 | 3 | 6 | 91 | 40 | 124 | 5.41e-12 | 65.9 |
| MS.gene051311.t1 | MTR_2g436560 | 36.290 | 124 | 64 | 4 | 4 | 120 | 104 | 219 | 2.37e-11 | 64.7 |
| MS.gene051311.t1 | MTR_5g004570 | 41.892 | 74 | 42 | 1 | 4 | 77 | 6 | 78 | 2.62e-11 | 63.5 |
| MS.gene051311.t1 | MTR_6g059870 | 49.231 | 65 | 31 | 1 | 3 | 67 | 65 | 127 | 3.70e-11 | 64.7 |
| MS.gene051311.t1 | MTR_2g435450 | 49.231 | 65 | 31 | 1 | 3 | 67 | 38 | 100 | 7.04e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051311.t1 | AT2G20560 | 59.770 | 348 | 112 | 6 | 1 | 338 | 1 | 330 | 5.54e-138 | 395 |
| MS.gene051311.t1 | AT3G08910 | 60.472 | 339 | 108 | 7 | 1 | 338 | 1 | 314 | 2.10e-132 | 380 |
| MS.gene051311.t1 | AT4G28480 | 60.340 | 353 | 113 | 8 | 1 | 338 | 1 | 341 | 7.18e-131 | 377 |
| MS.gene051311.t1 | AT5G01390 | 58.382 | 346 | 117 | 8 | 1 | 338 | 1 | 327 | 1.85e-128 | 371 |
| MS.gene051311.t1 | AT5G25530 | 53.198 | 344 | 142 | 8 | 1 | 338 | 1 | 331 | 1.61e-115 | 338 |
| MS.gene051311.t1 | AT5G25530 | 51.989 | 352 | 142 | 9 | 1 | 338 | 1 | 339 | 1.50e-112 | 331 |
| MS.gene051311.t1 | AT4G28480 | 53.372 | 341 | 98 | 8 | 1 | 338 | 1 | 283 | 2.02e-104 | 308 |
| MS.gene051311.t1 | AT1G10350 | 49.560 | 341 | 162 | 7 | 1 | 335 | 1 | 337 | 3.05e-103 | 307 |
| MS.gene051311.t1 | AT1G59725 | 49.419 | 344 | 146 | 7 | 1 | 338 | 1 | 322 | 2.51e-98 | 294 |
| MS.gene051311.t1 | AT3G47940 | 47.658 | 363 | 136 | 10 | 1 | 335 | 1 | 337 | 8.40e-97 | 291 |
| MS.gene051311.t1 | AT5G01390 | 48.225 | 338 | 106 | 6 | 1 | 338 | 1 | 269 | 5.70e-90 | 271 |
| MS.gene051311.t1 | AT2G20550 | 49.466 | 281 | 94 | 5 | 100 | 338 | 3 | 277 | 8.48e-74 | 230 |
| MS.gene051311.t1 | AT2G20550 | 49.466 | 281 | 94 | 5 | 100 | 338 | 3 | 277 | 8.48e-74 | 230 |
| MS.gene051311.t1 | AT5G01390 | 54.726 | 201 | 68 | 5 | 1 | 194 | 1 | 185 | 5.57e-63 | 200 |
| MS.gene051311.t1 | AT5G01390 | 64.754 | 122 | 42 | 1 | 1 | 122 | 1 | 121 | 1.49e-46 | 158 |
| MS.gene051311.t1 | AT5G01390 | 47.143 | 140 | 32 | 2 | 199 | 338 | 133 | 230 | 4.40e-28 | 109 |
| MS.gene051311.t1 | AT1G44160 | 38.462 | 208 | 117 | 4 | 133 | 339 | 151 | 348 | 3.16e-34 | 129 |
| MS.gene051311.t1 | AT5G22060 | 32.432 | 370 | 171 | 13 | 5 | 332 | 15 | 347 | 1.08e-33 | 129 |
| MS.gene051311.t1 | AT3G44110 | 32.000 | 350 | 198 | 10 | 5 | 332 | 15 | 346 | 1.44e-33 | 128 |
| MS.gene051311.t1 | AT1G11040 | 38.624 | 189 | 107 | 4 | 151 | 338 | 246 | 426 | 4.32e-33 | 127 |
| MS.gene051311.t1 | AT3G62600 | 29.762 | 336 | 205 | 9 | 2 | 332 | 24 | 333 | 3.63e-30 | 118 |
| MS.gene051311.t1 | AT3G44110 | 29.630 | 351 | 175 | 9 | 5 | 317 | 15 | 331 | 1.20e-28 | 114 |
| MS.gene051311.t1 | AT2G22360 | 25.706 | 354 | 222 | 11 | 4 | 335 | 86 | 420 | 6.50e-20 | 90.5 |
| MS.gene051311.t1 | AT4G39960 | 52.326 | 86 | 38 | 2 | 4 | 88 | 85 | 168 | 6.13e-19 | 87.8 |
| MS.gene051311.t1 | AT4G39960 | 52.326 | 86 | 38 | 2 | 4 | 88 | 85 | 168 | 6.13e-19 | 87.8 |
| MS.gene051311.t1 | AT1G80030 | 52.941 | 85 | 35 | 2 | 4 | 88 | 75 | 154 | 2.08e-18 | 86.3 |
| MS.gene051311.t1 | AT1G80030 | 52.941 | 85 | 35 | 2 | 4 | 88 | 75 | 154 | 2.53e-18 | 86.3 |
| MS.gene051311.t1 | AT1G80030 | 52.941 | 85 | 35 | 2 | 4 | 88 | 75 | 154 | 2.53e-18 | 86.3 |
| MS.gene051311.t1 | AT1G80030 | 52.941 | 85 | 35 | 2 | 4 | 88 | 75 | 154 | 2.53e-18 | 86.3 |
| MS.gene051311.t1 | AT2G41000 | 43.333 | 90 | 45 | 2 | 3 | 88 | 2 | 89 | 6.26e-17 | 79.0 |
| MS.gene051311.t1 | AT3G17830 | 50.000 | 86 | 37 | 2 | 2 | 85 | 61 | 142 | 6.64e-17 | 82.0 |
| MS.gene051311.t1 | AT2G41000 | 43.333 | 90 | 45 | 2 | 3 | 88 | 2 | 89 | 1.59e-16 | 77.0 |
| MS.gene051311.t1 | AT5G03160 | 51.471 | 68 | 33 | 0 | 4 | 71 | 370 | 437 | 9.28e-16 | 78.6 |
| MS.gene051311.t1 | AT1G59980 | 54.839 | 62 | 27 | 1 | 6 | 67 | 25 | 85 | 1.50e-15 | 77.0 |
| MS.gene051311.t1 | AT5G48030 | 56.923 | 65 | 27 | 1 | 4 | 68 | 94 | 157 | 1.61e-15 | 77.8 |
| MS.gene051311.t1 | AT1G59980 | 54.839 | 62 | 27 | 1 | 6 | 67 | 25 | 85 | 2.83e-15 | 76.6 |
| MS.gene051311.t1 | AT5G16650 | 56.250 | 64 | 27 | 1 | 4 | 67 | 11 | 73 | 6.22e-15 | 72.0 |
| MS.gene051311.t1 | AT1G56300 | 50.000 | 66 | 30 | 1 | 5 | 67 | 14 | 79 | 6.26e-15 | 70.9 |
| MS.gene051311.t1 | AT5G16650 | 56.250 | 64 | 27 | 1 | 4 | 67 | 11 | 73 | 6.47e-15 | 70.9 |
| MS.gene051311.t1 | AT1G56300 | 50.000 | 66 | 30 | 1 | 5 | 67 | 14 | 79 | 6.78e-15 | 71.6 |
| MS.gene051311.t1 | AT1G68370 | 56.250 | 64 | 27 | 1 | 4 | 67 | 17 | 79 | 1.10e-14 | 75.1 |
| MS.gene051311.t1 | AT2G21510 | 54.545 | 66 | 29 | 1 | 4 | 69 | 6 | 70 | 1.27e-13 | 71.2 |
| MS.gene051311.t1 | AT2G21510 | 54.545 | 66 | 29 | 1 | 4 | 69 | 6 | 70 | 1.27e-13 | 71.2 |
| MS.gene051311.t1 | AT2G21510 | 54.545 | 66 | 29 | 1 | 4 | 69 | 6 | 70 | 1.30e-13 | 71.2 |
| MS.gene051311.t1 | AT2G21510 | 54.545 | 66 | 29 | 1 | 4 | 69 | 6 | 70 | 1.30e-13 | 71.2 |
| MS.gene051311.t1 | AT2G33735 | 46.154 | 65 | 34 | 1 | 4 | 68 | 22 | 85 | 1.62e-13 | 67.0 |
| MS.gene051311.t1 | AT2G33735 | 46.154 | 65 | 34 | 1 | 4 | 68 | 22 | 85 | 1.62e-13 | 67.0 |
| MS.gene051311.t1 | AT2G21510 | 54.545 | 66 | 29 | 1 | 4 | 69 | 6 | 70 | 1.81e-13 | 70.9 |
| MS.gene051311.t1 | AT5G06910 | 50.794 | 63 | 30 | 1 | 6 | 68 | 31 | 92 | 5.14e-13 | 68.9 |
| MS.gene051311.t1 | AT1G71000 | 46.970 | 66 | 32 | 1 | 5 | 67 | 9 | 74 | 2.07e-12 | 65.1 |
| MS.gene051311.t1 | AT4G13830 | 43.284 | 67 | 37 | 1 | 3 | 68 | 65 | 131 | 2.72e-12 | 64.3 |
| MS.gene051311.t1 | AT4G13830 | 43.284 | 67 | 37 | 1 | 3 | 68 | 65 | 131 | 3.90e-12 | 64.7 |
| MS.gene051311.t1 | AT1G71000 | 46.970 | 66 | 32 | 1 | 5 | 67 | 9 | 74 | 4.61e-12 | 63.9 |
| MS.gene051311.t1 | AT1G24120 | 50.000 | 64 | 31 | 1 | 4 | 67 | 20 | 82 | 5.07e-12 | 67.0 |
| MS.gene051311.t1 | AT2G35720 | 47.059 | 68 | 34 | 1 | 4 | 69 | 15 | 82 | 5.19e-12 | 67.0 |
| MS.gene051311.t1 | AT4G13830 | 43.284 | 67 | 37 | 1 | 3 | 68 | 65 | 131 | 1.40e-11 | 63.5 |
| MS.gene051311.t1 | AT3G12170 | 47.619 | 63 | 32 | 1 | 6 | 68 | 13 | 74 | 1.49e-11 | 64.3 |
| MS.gene051311.t1 | AT4G39150 | 48.485 | 66 | 33 | 1 | 4 | 69 | 6 | 70 | 1.77e-11 | 65.1 |
| MS.gene051311.t1 | AT4G39150 | 48.485 | 66 | 33 | 1 | 4 | 69 | 6 | 70 | 1.77e-11 | 65.1 |
| MS.gene051311.t1 | AT4G39150 | 48.485 | 66 | 33 | 1 | 4 | 69 | 6 | 70 | 1.77e-11 | 65.1 |
| MS.gene051311.t1 | AT4G19570 | 50.000 | 70 | 33 | 1 | 4 | 73 | 66 | 133 | 1.90e-11 | 65.5 |
| MS.gene051311.t1 | AT3G12170 | 47.619 | 63 | 32 | 1 | 6 | 68 | 49 | 110 | 2.29e-11 | 64.3 |
| MS.gene051311.t1 | AT3G08970 | 47.761 | 67 | 33 | 1 | 3 | 69 | 26 | 90 | 2.41e-11 | 65.1 |
| MS.gene051311.t1 | AT3G08970 | 47.761 | 67 | 33 | 1 | 3 | 69 | 26 | 90 | 2.41e-11 | 65.1 |
| MS.gene051311.t1 | AT5G37750 | 44.048 | 84 | 43 | 2 | 4 | 85 | 70 | 151 | 4.27e-11 | 62.8 |
| MS.gene051311.t1 | AT3G06340 | 36.697 | 109 | 64 | 2 | 3 | 111 | 66 | 169 | 5.79e-11 | 63.9 |
| MS.gene051311.t1 | AT3G06340 | 36.697 | 109 | 64 | 2 | 3 | 111 | 66 | 169 | 5.79e-11 | 63.9 |
| MS.gene051311.t1 | AT3G06340 | 36.697 | 109 | 64 | 2 | 3 | 111 | 66 | 169 | 5.79e-11 | 63.9 |
| MS.gene051311.t1 | AT3G06340 | 36.697 | 109 | 64 | 2 | 3 | 111 | 66 | 169 | 5.79e-11 | 63.9 |
| MS.gene051311.t1 | AT1G21080 | 42.667 | 75 | 42 | 1 | 4 | 78 | 6 | 79 | 5.94e-11 | 63.5 |
| MS.gene051311.t1 | AT1G21080 | 42.667 | 75 | 42 | 1 | 4 | 78 | 6 | 79 | 6.39e-11 | 63.5 |
| MS.gene051311.t1 | AT3G14200 | 45.312 | 64 | 33 | 1 | 6 | 67 | 14 | 77 | 6.54e-11 | 62.0 |
| MS.gene051311.t1 | AT5G49060 | 49.231 | 65 | 31 | 1 | 4 | 68 | 99 | 161 | 8.53e-11 | 62.8 |
| MS.gene051311.t1 | AT5G49060 | 49.231 | 65 | 31 | 1 | 4 | 68 | 99 | 161 | 8.53e-11 | 62.8 |
Find 76 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTGTTCATTTCCTTTCTC+TGG | 0.197269 | 5.4:+19957890 | None:intergenic |
| TTTGGATTACTATGAGATTT+TGG | 0.205034 | 5.4:-19959675 | MS.gene051311:CDS |
| TGTGAAGGATTCTTGGAAAT+TGG | 0.207598 | 5.4:+19957635 | None:intergenic |
| TTATTGTCAGGATTCTTATC+AGG | 0.253732 | 5.4:+19959584 | None:intergenic |
| ACCCTTCTGTGAAGGATTCT+TGG | 0.263216 | 5.4:+19957628 | None:intergenic |
| CTGACCATTGCCATAGAAAA+TGG | 0.264965 | 5.4:-19957701 | MS.gene051311:CDS |
| CTATGAACATTTCTTAGTTC+TGG | 0.271872 | 5.4:+19957546 | None:intergenic |
| AAATATGCCATCTGCACTTC+TGG | 0.292239 | 5.4:+19958578 | None:intergenic |
| AATCCAACCAGGCTGGAAAA+AGG | 0.300367 | 5.4:-19957930 | MS.gene051311:CDS |
| ACCTTCTGCCATCATGAGTT+TGG | 0.300403 | 5.4:+19958613 | None:intergenic |
| CCATCATGAGTTTGGAAGTA+TGG | 0.318658 | 5.4:+19958621 | None:intergenic |
| TCGTGGGTGTCCAGGTCTTT+TGG | 0.336631 | 5.4:-19958471 | MS.gene051311:CDS |
| CTTATCAGGGTGCCATTTCA+TGG | 0.338061 | 5.4:+19959598 | None:intergenic |
| TACAAGACAAGGTAATGATT+TGG | 0.349376 | 5.4:-19957810 | MS.gene051311:CDS |
| CACCTTCCAACTTACTACTT+TGG | 0.365824 | 5.4:-19957735 | MS.gene051311:CDS |
| CTCATTCCCATTCCTCCATA+AGG | 0.366245 | 5.4:+19958531 | None:intergenic |
| AGCCTTGAGGAACTTTATAA+AGG | 0.373517 | 5.4:-19958354 | MS.gene051311:CDS |
| CTTCACAGAAGGGTAATCTT+AGG | 0.375432 | 5.4:-19957619 | MS.gene051311:CDS |
| GGGCGGCGGCTGCAGAGGCA+TGG | 0.376556 | 5.4:-19958508 | MS.gene051311:CDS |
| GCCGGCAACCACTTCTTCAT+AGG | 0.383100 | 5.4:+19957667 | None:intergenic |
| GTTGTTCATTTCCTTTCTCT+GGG | 0.397871 | 5.4:+19957891 | None:intergenic |
| TTCCAACTTACTACTTTGGA+TGG | 0.408557 | 5.4:-19957731 | MS.gene051311:CDS |
| ATAGAAAACTTGCCATGAAA+TGG | 0.412382 | 5.4:-19959610 | MS.gene051311:CDS |
| GGCGGCGGCTGCAGAGGCAT+GGG | 0.419490 | 5.4:-19958507 | MS.gene051311:CDS |
| TCAAGCCCTTATGGAGGAAT+GGG | 0.422615 | 5.4:-19958537 | MS.gene051311:CDS |
| TCATTCCCATTCCTCCATAA+GGG | 0.426221 | 5.4:+19958532 | None:intergenic |
| CTCATGATGGCAGAAGGTTT+AGG | 0.431407 | 5.4:-19958608 | MS.gene051311:CDS |
| TCAGCATCATTCTTATTGTC+AGG | 0.435149 | 5.4:+19959572 | None:intergenic |
| ATATCTGCAGCAATGACATT+TGG | 0.437256 | 5.4:+19957869 | None:intergenic |
| ATGGGAGGTGCCTTGCGTCT+TGG | 0.439334 | 5.4:+19958396 | None:intergenic |
| TCCTATGAAGAAGTGGTTGC+CGG | 0.441137 | 5.4:-19957668 | MS.gene051311:CDS |
| GGAATGGGAATGAGGGGCGG+CGG | 0.451910 | 5.4:-19958522 | MS.gene051311:CDS |
| ATGAGGGGCGGCGGCTGCAG+AGG | 0.461247 | 5.4:-19958513 | MS.gene051311:CDS |
| GTTTCAGCATCAACCGTGCT+AGG | 0.461527 | 5.4:+19957575 | None:intergenic |
| CACATATACCTCATATGCTT+CGG | 0.461738 | 5.4:+19959529 | None:intergenic |
| AATATGCCATCTGCACTTCT+GGG | 0.462504 | 5.4:+19958579 | None:intergenic |
| TATTGTCAGGATTCTTATCA+GGG | 0.462954 | 5.4:+19959585 | None:intergenic |
| CTTATGGAGGAATGGGAATG+AGG | 0.472062 | 5.4:-19958530 | MS.gene051311:CDS |
| AAAGTAGTGGAAGATGGGTT+TGG | 0.472595 | 5.4:-19959693 | None:intergenic |
| TTCAAGCCCTTATGGAGGAA+TGG | 0.472986 | 5.4:-19958538 | MS.gene051311:CDS |
| ACTCATATCCGAAGCATATG+AGG | 0.475266 | 5.4:-19959537 | MS.gene051311:intron |
| AAAATCACTTTCCCAGAGAA+AGG | 0.488986 | 5.4:-19957902 | MS.gene051311:CDS |
| GAGGTCAGTCGTGGGTGTCC+AGG | 0.495164 | 5.4:-19958479 | MS.gene051311:CDS |
| ATTGTTAGTATTTCCTCCAC+AGG | 0.497108 | 5.4:+19957956 | None:intergenic |
| GGAAATTGGCATCCTTTCGC+CGG | 0.499695 | 5.4:+19957649 | None:intergenic |
| GAAAATATCGCCAAAAGACC+TGG | 0.500624 | 5.4:+19958461 | None:intergenic |
| GTCCATCCAAAGTAGTAAGT+TGG | 0.505940 | 5.4:+19957729 | None:intergenic |
| TTCCAAGAATCCTTCACAGA+AGG | 0.519442 | 5.4:-19957630 | MS.gene051311:CDS |
| GGAGGAATGGGAATGAGGGG+CGG | 0.532345 | 5.4:-19958525 | MS.gene051311:CDS |
| TCCAAGAATCCTTCACAGAA+GGG | 0.533320 | 5.4:-19957629 | MS.gene051311:CDS |
| TGGGCATGAGAGGTCAGTCG+TGG | 0.533992 | 5.4:-19958488 | MS.gene051311:CDS |
| TTATGGAGGAATGGGAATGA+GGG | 0.534716 | 5.4:-19958529 | MS.gene051311:CDS |
| AAGAAGTGGTTGCCGGCGAA+AGG | 0.544486 | 5.4:-19957661 | MS.gene051311:CDS |
| TGCAGAGGCATGGGCATGAG+AGG | 0.547127 | 5.4:-19958498 | MS.gene051311:CDS |
| CACAATGTATTTACAAGACA+AGG | 0.557753 | 5.4:-19957821 | MS.gene051311:CDS |
| CAATTGAAATCCAACCAGGC+TGG | 0.559519 | 5.4:-19957937 | MS.gene051311:CDS |
| CCATACTTCCAAACTCATGA+TGG | 0.563682 | 5.4:-19958621 | MS.gene051311:CDS |
| TGATCCATCCTATGAAGAAG+TGG | 0.566754 | 5.4:-19957675 | MS.gene051311:CDS |
| CTAAGATTACCCTTCTGTGA+AGG | 0.575988 | 5.4:+19957620 | None:intergenic |
| TGTCTTGTAAATACATTGTG+AGG | 0.577798 | 5.4:+19957824 | None:intergenic |
| GCAACCACTTCTTCATAGGA+TGG | 0.578289 | 5.4:+19957671 | None:intergenic |
| GCTGCACTGTCACCTGCTGT+AGG | 0.578443 | 5.4:+19958645 | None:intergenic |
| TCCAAACTCATGATGGCAGA+AGG | 0.585224 | 5.4:-19958614 | MS.gene051311:CDS |
| TTCAATCCCAGAAGTGCAGA+TGG | 0.585321 | 5.4:-19958585 | MS.gene051311:CDS |
| TAAAGTTCCTCAAGGCTGCA+AGG | 0.586456 | 5.4:+19958360 | None:intergenic |
| TACCTTTATAAAGTTCCTCA+AGG | 0.588311 | 5.4:+19958352 | None:intergenic |
| TAAATTGCCTTGCAGCCTTG+AGG | 0.591013 | 5.4:-19958367 | MS.gene051311:CDS |
| CTTACTACTTTGGATGGACG+AGG | 0.593609 | 5.4:-19957725 | MS.gene051311:CDS |
| TTTCAGCATCAACCGTGCTA+GGG | 0.595565 | 5.4:+19957576 | None:intergenic |
| CAAAAGATATTACTTGCAGA+AGG | 0.606997 | 5.4:-19957779 | MS.gene051311:CDS |
| ATCCAAAGTAGTAAGTTGGA+AGG | 0.613336 | 5.4:+19957733 | None:intergenic |
| CAACATCACATTCCCTAGCA+CGG | 0.615494 | 5.4:-19957588 | MS.gene051311:CDS |
| CTAACAATTGAAATCCAACC+AGG | 0.624854 | 5.4:-19957941 | MS.gene051311:CDS |
| GGGCATGAGAGGTCAGTCGT+GGG | 0.626238 | 5.4:-19958487 | MS.gene051311:CDS |
| GAGTCAAGCTCCAAGACGCA+AGG | 0.642529 | 5.4:-19958406 | MS.gene051311:CDS |
| TATGGAGGAATGGGAATGAG+GGG | 0.684119 | 5.4:-19958528 | MS.gene051311:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGGAAAAAATTGAAAATTG+AGG | + | chr5.4:19958026-19958045 | None:intergenic | 20.0% |
| !!! | AAATTGAAAATTGAGGATTT+TGG | + | chr5.4:19958019-19958038 | None:intergenic | 20.0% |
| !!! | ATTGAAATTTTACTGAATGA+TGG | + | chr5.4:19958382-19958401 | None:intergenic | 20.0% |
| !!! | TTTTTATTTTGGTAAAACCA+AGG | + | chr5.4:19958275-19958294 | None:intergenic | 20.0% |
| ! | AGTTTCAATACATTTCTAAC+TGG | - | chr5.4:19959068-19959087 | MS.gene051311:intron | 25.0% |
| ! | ATAAGATGTAGTTACAAAGT+TGG | + | chr5.4:19959134-19959153 | None:intergenic | 25.0% |
| ! | ATTGATCTTAGTTACTTCAA+AGG | - | chr5.4:19958220-19958239 | MS.gene051311:intron | 25.0% |
| ! | CTTGTTGAGTAATGTTATAA+GGG | - | chr5.4:19958330-19958349 | MS.gene051311:CDS | 25.0% |
| ! | GGAAAAACATATCTTATGAT+AGG | - | chr5.4:19958185-19958204 | MS.gene051311:intron | 25.0% |
| ! | GTAACTAAGATCAATTTAAG+AGG | + | chr5.4:19958215-19958234 | None:intergenic | 25.0% |
| ! | GTTTAATTGCTACAAAACTA+TGG | - | chr5.4:19957755-19957774 | MS.gene051311:CDS | 25.0% |
| !! | ACTTGTTGAGTAATGTTATA+AGG | - | chr5.4:19958329-19958348 | MS.gene051311:CDS | 25.0% |
| !! | ATATGTTTTTCCATATACCA+CGG | + | chr5.4:19958177-19958196 | None:intergenic | 25.0% |
| !! | TTTGGATTACTATGAGATTT+TGG | - | chr5.4:19957564-19957583 | MS.gene051311:CDS | 25.0% |
| !!! | AAAATTGAGGATTTTGGTAA+GGG | + | chr5.4:19958013-19958032 | None:intergenic | 25.0% |
| !!! | ATTATCTTGTTTCTCTGTTT+TGG | - | chr5.4:19957825-19957844 | MS.gene051311:CDS | 25.0% |
| !!! | CAAGGCAATTTATTTTCAAT+GGG | + | chr5.4:19958864-19958883 | None:intergenic | 25.0% |
| !!! | GCACACAATTCTTTTTATTT+TGG | + | chr5.4:19958286-19958305 | None:intergenic | 25.0% |
| AAAATTCTTTGACCCTTCTT+AGG | + | chr5.4:19957972-19957991 | None:intergenic | 30.0% | |
| AAATTCTTTGACCCTTCTTA+GGG | + | chr5.4:19957971-19957990 | None:intergenic | 30.0% | |
| ACATTCAGATTGGATAATGA+AGG | + | chr5.4:19958045-19958064 | None:intergenic | 30.0% | |
| ATAGAAAACTTGCCATGAAA+TGG | - | chr5.4:19957629-19957648 | MS.gene051311:CDS | 30.0% | |
| CAAAAAGATGAAGATCTCAA+GGG | - | chr5.4:19958914-19958933 | MS.gene051311:intron | 30.0% | |
| CAAAAGATATTACTTGCAGA+AGG | - | chr5.4:19959460-19959479 | MS.gene051311:intron | 30.0% | |
| CACAATGTATTTACAAGACA+AGG | - | chr5.4:19959418-19959437 | MS.gene051311:intron | 30.0% | |
| GATGGAAAATAAGTACAACA+AGG | + | chr5.4:19958364-19958383 | None:intergenic | 30.0% | |
| TACAAGACAAGGTAATGATT+TGG | - | chr5.4:19959429-19959448 | MS.gene051311:intron | 30.0% | |
| TACCTTTATAAAGTTCCTCA+AGG | + | chr5.4:19958890-19958909 | None:intergenic | 30.0% | |
| TATTGTCAGGATTCTTATCA+GGG | + | chr5.4:19957657-19957676 | None:intergenic | 30.0% | |
| TGATGTGAATTAAAAAGCCA+GGG | + | chr5.4:19958972-19958991 | None:intergenic | 30.0% | |
| TGTCTTGTAAATACATTGTG+AGG | + | chr5.4:19959418-19959437 | None:intergenic | 30.0% | |
| TTATTGTCAGGATTCTTATC+AGG | + | chr5.4:19957658-19957677 | None:intergenic | 30.0% | |
| TTCAATACATTTCTAACTGG+CGG | - | chr5.4:19959071-19959090 | MS.gene051311:intron | 30.0% | |
| TTCATTATCCAATCTGAATG+TGG | - | chr5.4:19958044-19958063 | MS.gene051311:intron | 30.0% | |
| TTGATGTGAATTAAAAAGCC+AGG | + | chr5.4:19958973-19958992 | None:intergenic | 30.0% | |
| ! | AATTCCATTTTCTATGGCAA+TGG | + | chr5.4:19959545-19959564 | None:intergenic | 30.0% |
| ! | ATTTTCGGCAAAGATGTATT+TGG | - | chr5.4:19958795-19958814 | MS.gene051311:intron | 30.0% |
| ! | TCATAAATTGCTCTCTTTTG+CGG | + | chr5.4:19958540-19958559 | None:intergenic | 30.0% |
| ! | TCTGACGTAGTATATTGATT+TGG | - | chr5.4:19958492-19958511 | MS.gene051311:CDS | 30.0% |
| ! | TGGATCAATTCCATTTTCTA+TGG | + | chr5.4:19959551-19959570 | None:intergenic | 30.0% |
| ! | TTTGACTTTCATCCTAAGTA+AGG | - | chr5.4:19958110-19958129 | MS.gene051311:intron | 30.0% |
| !! | AGTATATTGATTTGGCTTCA+TGG | - | chr5.4:19958500-19958519 | MS.gene051311:CDS | 30.0% |
| !! | CTGTAGGCATTTCATTTTTA+AGG | + | chr5.4:19958581-19958600 | None:intergenic | 30.0% |
| !! | GAAAATTGAGGATTTTGGTA+AGG | + | chr5.4:19958014-19958033 | None:intergenic | 30.0% |
| !! | GCAAGGCAATTTATTTTCAA+TGG | + | chr5.4:19958865-19958884 | None:intergenic | 30.0% |
| !! | TGTTTACTGTCTTTTGTTTG+AGG | - | chr5.4:19957871-19957890 | MS.gene051311:CDS | 30.0% |
| AAAAATGAAATGCCTACAGC+AGG | - | chr5.4:19958582-19958601 | MS.gene051311:CDS | 35.0% | |
| AAAATCACTTTCCCAGAGAA+AGG | - | chr5.4:19959337-19959356 | MS.gene051311:intron | 35.0% | |
| AACATGGATAGACAAAGAGT+TGG | + | chr5.4:19958431-19958450 | None:intergenic | 35.0% | |
| AATTCTTTGACCCTTCTTAG+GGG | + | chr5.4:19957970-19957989 | None:intergenic | 35.0% | |
| ACTGATTGTAGCCATCAAAT+TGG | + | chr5.4:19957919-19957938 | None:intergenic | 35.0% | |
| ACTTGTAGACACACATGAAA+GGG | + | chr5.4:19959212-19959231 | None:intergenic | 35.0% | |
| AGCCTTGAGGAACTTTATAA+AGG | - | chr5.4:19958885-19958904 | MS.gene051311:intron | 35.0% | |
| ATATCTGCAGCAATGACATT+TGG | + | chr5.4:19959373-19959392 | None:intergenic | 35.0% | |
| ATTGTTAGTATTTCCTCCAC+AGG | + | chr5.4:19959286-19959305 | None:intergenic | 35.0% | |
| CACATATACCTCATATGCTT+CGG | + | chr5.4:19957713-19957732 | None:intergenic | 35.0% | |
| CAGATTCTGTGAACATTTCA+TGG | + | chr5.4:19958476-19958495 | None:intergenic | 35.0% | |
| CCAAAAAGATGAAGATCTCA+AGG | - | chr5.4:19958913-19958932 | MS.gene051311:intron | 35.0% | |
| CTAACAATTGAAATCCAACC+AGG | - | chr5.4:19959298-19959317 | MS.gene051311:intron | 35.0% | |
| GATGTGAATTAAAAAGCCAG+GGG | + | chr5.4:19958971-19958990 | None:intergenic | 35.0% | |
| GTTGTTCATTTCCTTTCTCT+GGG | + | chr5.4:19959351-19959370 | None:intergenic | 35.0% | |
| TACAATCAGTGACATACAGT+CGG | - | chr5.4:19957929-19957948 | MS.gene051311:CDS | 35.0% | |
| TACTTGTAGACACACATGAA+AGG | + | chr5.4:19959213-19959232 | None:intergenic | 35.0% | |
| TCAGCATCATTCTTATTGTC+AGG | + | chr5.4:19957670-19957689 | None:intergenic | 35.0% | |
| TCTTTGTCTATCCATGTTGT+GGG | - | chr5.4:19958433-19958452 | MS.gene051311:CDS | 35.0% | |
| TGTGAAGGATTCTTGGAAAT+TGG | + | chr5.4:19959607-19959626 | None:intergenic | 35.0% | |
| TTCCAACTTACTACTTTGGA+TGG | - | chr5.4:19959508-19959527 | MS.gene051311:intron | 35.0% | |
| ! | ACTGATCATTCATGTTTCTG+AGG | - | chr5.4:19957781-19957800 | MS.gene051311:CDS | 35.0% |
| ! | AGGTCTTTTGGCGATATTTT+CGG | - | chr5.4:19958780-19958799 | MS.gene051311:intron | 35.0% |
| ! | ATCCAAAGTAGTAAGTTGGA+AGG | + | chr5.4:19959509-19959528 | None:intergenic | 35.0% |
| ! | CCTTGAGATCTTCATCTTTT+TGG | + | chr5.4:19958916-19958935 | None:intergenic | 35.0% |
| ! | GGATTACTATGAGATTTTGG+AGG | - | chr5.4:19957567-19957586 | MS.gene051311:CDS | 35.0% |
| ! | GGCATATTTGCAGAAGTTTT+TGG | - | chr5.4:19958675-19958694 | MS.gene051311:CDS | 35.0% |
| ! | GTGTTTGAGATCCAATTTGA+TGG | - | chr5.4:19957905-19957924 | MS.gene051311:CDS | 35.0% |
| !! | ATATTGATTTGGCTTCATGG+AGG | - | chr5.4:19958503-19958522 | MS.gene051311:CDS | 35.0% |
| !! | GGCAATTTATTTTCAATGGG+AGG | + | chr5.4:19958861-19958880 | None:intergenic | 35.0% |
| !!! | GCAGAATGAGAGTTTTTTGT+TGG | - | chr5.4:19959029-19959048 | MS.gene051311:intron | 35.0% |
| AAATAGCGCCACATTCAGAT+TGG | + | chr5.4:19958055-19958074 | None:intergenic | 40.0% | |
| AAATATGCCATCTGCACTTC+TGG | + | chr5.4:19958664-19958683 | None:intergenic | 40.0% | |
| AATATGCCATCTGCACTTCT+GGG | + | chr5.4:19958663-19958682 | None:intergenic | 40.0% | |
| ACTCATATCCGAAGCATATG+AGG | - | chr5.4:19957702-19957721 | MS.gene051311:CDS | 40.0% | |
| AGGGAAATTGCATATGCAAG+TGG | - | chr5.4:19958933-19958952 | MS.gene051311:intron | 40.0% | |
| ATACAGTCGGATGAAAACTG+AGG | - | chr5.4:19957942-19957961 | MS.gene051311:CDS | 40.0% | |
| ATGTAAGCATCATTGGTCCA+GGG | - | chr5.4:19958139-19958158 | MS.gene051311:intron | 40.0% | |
| CACCTTCCAACTTACTACTT+TGG | - | chr5.4:19959504-19959523 | MS.gene051311:intron | 40.0% | |
| CCATACTTCCAAACTCATGA+TGG | - | chr5.4:19958618-19958637 | MS.gene051311:CDS | 40.0% | |
| CCATCATGAGTTTGGAAGTA+TGG | + | chr5.4:19958621-19958640 | None:intergenic | 40.0% | |
| CTAAGATTACCCTTCTGTGA+AGG | + | chr5.4:19959622-19959641 | None:intergenic | 40.0% | |
| CTCTTTGTCTATCCATGTTG+TGG | - | chr5.4:19958432-19958451 | MS.gene051311:CDS | 40.0% | |
| CTGACCATTGCCATAGAAAA+TGG | - | chr5.4:19959538-19959557 | MS.gene051311:CDS | 40.0% | |
| CTTCACAGAAGGGTAATCTT+AGG | - | chr5.4:19959620-19959639 | MS.gene051311:CDS | 40.0% | |
| CTTTGTCTATCCATGTTGTG+GGG | - | chr5.4:19958434-19958453 | MS.gene051311:CDS | 40.0% | |
| GAAAATATCGCCAAAAGACC+TGG | + | chr5.4:19958781-19958800 | None:intergenic | 40.0% | |
| GGGAAATTGCATATGCAAGT+GGG | - | chr5.4:19958934-19958953 | MS.gene051311:intron | 40.0% | |
| GGTTGTTCATTTCCTTTCTC+TGG | + | chr5.4:19959352-19959371 | None:intergenic | 40.0% | |
| GTCCATCCAAAGTAGTAAGT+TGG | + | chr5.4:19959513-19959532 | None:intergenic | 40.0% | |
| TAGACACACATGAAAGGGAA+CGG | + | chr5.4:19959207-19959226 | None:intergenic | 40.0% | |
| TCATTCCCATTCCTCCATAA+GGG | + | chr5.4:19958710-19958729 | None:intergenic | 40.0% | |
| TCCAAGAATCCTTCACAGAA+GGG | - | chr5.4:19959610-19959629 | MS.gene051311:CDS | 40.0% | |
| TGATCCATCCTATGAAGAAG+TGG | - | chr5.4:19959564-19959583 | MS.gene051311:CDS | 40.0% | |
| TTACATGGCACTCCTTACTT+AGG | + | chr5.4:19958125-19958144 | None:intergenic | 40.0% | |
| TTATGGAGGAATGGGAATGA+GGG | - | chr5.4:19958710-19958729 | MS.gene051311:CDS | 40.0% | |
| TTCCAAGAATCCTTCACAGA+AGG | - | chr5.4:19959609-19959628 | MS.gene051311:CDS | 40.0% | |
| ! | TTTTGCTGCAAACACACATG+CGG | + | chr5.4:19959257-19959276 | None:intergenic | 40.0% |
| !!! | TTTGGCTTTTCAAGCCCTTA+TGG | - | chr5.4:19958693-19958712 | MS.gene051311:CDS | 40.0% |
| AAACTGAGGATCCCCTAAGA+AGG | - | chr5.4:19957956-19957975 | MS.gene051311:CDS | 45.0% | |
| AACTGAGGATCCCCTAAGAA+GGG | - | chr5.4:19957957-19957976 | MS.gene051311:CDS | 45.0% | |
| AATCCAACCAGGCTGGAAAA+AGG | - | chr5.4:19959309-19959328 | MS.gene051311:intron | 45.0% | |
| ACCCTTCTGTGAAGGATTCT+TGG | + | chr5.4:19959614-19959633 | None:intergenic | 45.0% | |
| ACCTTCTGCCATCATGAGTT+TGG | + | chr5.4:19958629-19958648 | None:intergenic | 45.0% | |
| AGACACACATGAAAGGGAAC+GGG | + | chr5.4:19959206-19959225 | None:intergenic | 45.0% | |
| AGCAAAAACTGTACCTGTGG+AGG | - | chr5.4:19959270-19959289 | MS.gene051311:intron | 45.0% | |
| ATCCAACCAGGCTGGAAAAA+GGG | - | chr5.4:19959310-19959329 | MS.gene051311:intron | 45.0% | |
| CAACATCACATTCCCTAGCA+CGG | - | chr5.4:19959651-19959670 | MS.gene051311:CDS | 45.0% | |
| CAATTGAAATCCAACCAGGC+TGG | - | chr5.4:19959302-19959321 | MS.gene051311:intron | 45.0% | |
| CATGTAAGCATCATTGGTCC+AGG | - | chr5.4:19958138-19958157 | MS.gene051311:intron | 45.0% | |
| CTATCCATGTTGTGGGGAAT+GGG | - | chr5.4:19958440-19958459 | MS.gene051311:CDS | 45.0% | |
| CTCATGATGGCAGAAGGTTT+AGG | - | chr5.4:19958631-19958650 | MS.gene051311:CDS | 45.0% | |
| CTCATTCCCATTCCTCCATA+AGG | + | chr5.4:19958711-19958730 | None:intergenic | 45.0% | |
| CTGGACCAATGATGCTTACA+TGG | + | chr5.4:19958140-19958159 | None:intergenic | 45.0% | |
| CTTACTACTTTGGATGGACG+AGG | - | chr5.4:19959514-19959533 | MS.gene051311:intron | 45.0% | |
| CTTATGGAGGAATGGGAATG+AGG | - | chr5.4:19958709-19958728 | MS.gene051311:CDS | 45.0% | |
| GAGTGCCATGTAAGCATCAT+TGG | - | chr5.4:19958132-19958151 | MS.gene051311:intron | 45.0% | |
| GCAACCACTTCTTCATAGGA+TGG | + | chr5.4:19959571-19959590 | None:intergenic | 45.0% | |
| GTTGCACGTAGATGATACCT+TGG | - | chr5.4:19958255-19958274 | MS.gene051311:intron | 45.0% | |
| TAAAGTTCCTCAAGGCTGCA+AGG | + | chr5.4:19958882-19958901 | None:intergenic | 45.0% | |
| TAAATTGCCTTGCAGCCTTG+AGG | - | chr5.4:19958872-19958891 | MS.gene051311:intron | 45.0% | |
| TATCCATGTTGTGGGGAATG+GGG | - | chr5.4:19958441-19958460 | MS.gene051311:CDS | 45.0% | |
| TATGGAGGAATGGGAATGAG+GGG | - | chr5.4:19958711-19958730 | MS.gene051311:CDS | 45.0% | |
| TCAAGCCCTTATGGAGGAAT+GGG | - | chr5.4:19958702-19958721 | MS.gene051311:CDS | 45.0% | |
| TCCAAACTCATGATGGCAGA+AGG | - | chr5.4:19958625-19958644 | MS.gene051311:CDS | 45.0% | |
| TCCTATGAAGAAGTGGTTGC+CGG | - | chr5.4:19959571-19959590 | MS.gene051311:CDS | 45.0% | |
| TCTATCCATGTTGTGGGGAA+TGG | - | chr5.4:19958439-19958458 | MS.gene051311:CDS | 45.0% | |
| TGCAGCAAAAACTGTACCTG+TGG | - | chr5.4:19959267-19959286 | MS.gene051311:intron | 45.0% | |
| TTCAAGCCCTTATGGAGGAA+TGG | - | chr5.4:19958701-19958720 | MS.gene051311:CDS | 45.0% | |
| TTTCAGCATCAACCGTGCTA+GGG | + | chr5.4:19959666-19959685 | None:intergenic | 45.0% | |
| TTTGCTGCAAACACACATGC+GGG | + | chr5.4:19959256-19959275 | None:intergenic | 45.0% | |
| ! | GTTTTTCCATATACCACGGC+CGG | + | chr5.4:19958173-19958192 | None:intergenic | 45.0% |
| ! | TTCAATCCCAGAAGTGCAGA+TGG | - | chr5.4:19958654-19958673 | MS.gene051311:CDS | 45.0% |
| !! | CTTATCAGGGTGCCATTTCA+TGG | + | chr5.4:19957644-19957663 | None:intergenic | 45.0% |
| GGAAATTGGCATCCTTTCGC+CGG | + | chr5.4:19959593-19959612 | None:intergenic | 50.0% | |
| GTTTCAGCATCAACCGTGCT+AGG | + | chr5.4:19959667-19959686 | None:intergenic | 50.0% | |
| TTGGTCCAGGGTTTGATCTC+CGG | - | chr5.4:19958151-19958170 | MS.gene051311:intron | 50.0% | |
| ! | TTCCCTTTTTCCAGCCTGGT+TGG | + | chr5.4:19959315-19959334 | None:intergenic | 50.0% |
| ! | TTCGTTCCCTTTTTCCAGCC+TGG | + | chr5.4:19959319-19959338 | None:intergenic | 50.0% |
| !! | GGCTTTTCAAGCCCTTATGG+AGG | - | chr5.4:19958696-19958715 | MS.gene051311:CDS | 50.0% |
| AAGAAGTGGTTGCCGGCGAA+AGG | - | chr5.4:19959578-19959597 | MS.gene051311:CDS | 55.0% | |
| CATCCCCATTCCCCACAACA+TGG | + | chr5.4:19958447-19958466 | None:intergenic | 55.0% | |
| GAGTCAAGCTCCAAGACGCA+AGG | - | chr5.4:19958833-19958852 | MS.gene051311:intron | 55.0% | |
| GCCGGCAACCACTTCTTCAT+AGG | + | chr5.4:19959575-19959594 | None:intergenic | 55.0% | |
| GTGGGTAAATGCTCTTCCCC+TGG | - | chr5.4:19958952-19958971 | MS.gene051311:intron | 55.0% | |
| TGATCTCCGGCCGTGGTATA+TGG | - | chr5.4:19958164-19958183 | MS.gene051311:intron | 55.0% | |
| ! | TCGTGGGTGTCCAGGTCTTT+TGG | - | chr5.4:19958768-19958787 | MS.gene051311:intron | 55.0% |
| GCTGCACTGTCACCTGCTGT+AGG | + | chr5.4:19958597-19958616 | None:intergenic | 60.0% | |
| GGAGGAATGGGAATGAGGGG+CGG | - | chr5.4:19958714-19958733 | MS.gene051311:CDS | 60.0% | |
| GGGCATGAGAGGTCAGTCGT+GGG | - | chr5.4:19958752-19958771 | MS.gene051311:intron | 60.0% | |
| TGGGCATGAGAGGTCAGTCG+TGG | - | chr5.4:19958751-19958770 | MS.gene051311:intron | 60.0% | |
| ! | TGCAGAGGCATGGGCATGAG+AGG | - | chr5.4:19958741-19958760 | MS.gene051311:intron | 60.0% |
| !! | ATGGGAGGTGCCTTGCGTCT+TGG | + | chr5.4:19958846-19958865 | None:intergenic | 60.0% |
| CACGGCCGGAGATCAAACCC+TGG | + | chr5.4:19958159-19958178 | None:intergenic | 65.0% | |
| CAGGGTTTGATCTCCGGCCG+TGG | - | chr5.4:19958157-19958176 | MS.gene051311:intron | 65.0% | |
| GAGGTCAGTCGTGGGTGTCC+AGG | - | chr5.4:19958760-19958779 | MS.gene051311:intron | 65.0% | |
| GGAATGGGAATGAGGGGCGG+CGG | - | chr5.4:19958717-19958736 | MS.gene051311:CDS | 65.0% | |
| ATGAGGGGCGGCGGCTGCAG+AGG | - | chr5.4:19958726-19958745 | MS.gene051311:intron | 75.0% | |
| ! | GGCGGCGGCTGCAGAGGCAT+GGG | - | chr5.4:19958732-19958751 | MS.gene051311:intron | 75.0% |
| ! | GGGCGGCGGCTGCAGAGGCA+TGG | - | chr5.4:19958731-19958750 | MS.gene051311:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 19957559 | 19959702 | 19957559 | ID=MS.gene051311 |
| chr5.4 | mRNA | 19957559 | 19959702 | 19957559 | ID=MS.gene051311.t1;Parent=MS.gene051311 |
| chr5.4 | exon | 19959538 | 19959702 | 19959538 | ID=MS.gene051311.t1.exon1;Parent=MS.gene051311.t1 |
| chr5.4 | CDS | 19959538 | 19959702 | 19959538 | ID=cds.MS.gene051311.t1;Parent=MS.gene051311.t1 |
| chr5.4 | exon | 19958310 | 19958736 | 19958310 | ID=MS.gene051311.t1.exon2;Parent=MS.gene051311.t1 |
| chr5.4 | CDS | 19958310 | 19958736 | 19958310 | ID=cds.MS.gene051311.t1;Parent=MS.gene051311.t1 |
| chr5.4 | exon | 19957559 | 19957989 | 19957559 | ID=MS.gene051311.t1.exon3;Parent=MS.gene051311.t1 |
| chr5.4 | CDS | 19957559 | 19957989 | 19957559 | ID=cds.MS.gene051311.t1;Parent=MS.gene051311.t1 |
| Gene Sequence |
| Protein sequence |
