AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene93973


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93973.t1 MTR_6g071330 99.225 129 1 0 1 129 1 129 5.01e-92 262
MS.gene93973.t1 MTR_5g048060 98.450 129 2 0 1 129 1 129 1.29e-91 261
MS.gene93973.t1 MTR_6g071330 100.000 85 0 0 1 85 1 85 1.67e-57 173
MS.gene93973.t1 MTR_5g048060 95.890 73 3 0 57 129 21 93 1.15e-48 151
MS.gene93973.t1 MTR_8g104980 40.945 127 75 0 1 127 1 127 1.15e-26 96.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93973.t1 AT1G48440 67.442 129 42 0 1 129 1 129 7.19e-64 191
MS.gene93973.t1 AT3G17780 65.891 129 44 0 1 129 1 129 2.28e-56 172
MS.gene93973.t1 AT5G17190 40.310 129 77 0 1 129 1 129 4.46e-31 107
MS.gene93973.t1 AT3G03160 39.535 129 78 0 1 129 1 129 5.01e-30 105

Find 21 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGCTGGGTTTCAGCTTCT+TGG 0.198760 6.2:+73801389 MS.gene93973:CDS
CCATGCTTTGAATATCCTTC+TGG 0.286675 6.2:-73805523 None:intergenic
TTGCAGCATGCCTACTCTAT+TGG 0.401049 6.2:+73805199 MS.gene93973:CDS
GTCTGTTTGTAGATATATAC+TGG 0.412199 6.2:+73804196 MS.gene93973:intron
AAACGGTTCCTCAAAAGCTT+TGG 0.438768 6.2:-73801317 None:intergenic
AGAAGCTGAAACCCAGCAAA+GGG 0.519753 6.2:-73801386 None:intergenic
ATTCACTTTACCAATAGAGT+AGG 0.563900 6.2:-73805209 None:intergenic
CCTTCTGGAACTTGCAAATG+CGG 0.568136 6.2:-73805508 None:intergenic
GTGAAATCAGAGAAGTCAAA+CGG 0.569748 6.2:-73801334 None:intergenic
TTCCTCAAAAGCTTTGGTGA+AGG 0.577938 6.2:-73801311 None:intergenic
AAGGGAACAATGAAAAGCGC+AGG 0.586062 6.2:-73801368 None:intergenic
AAGAAGCTGAAACCCAGCAA+AGG 0.595675 6.2:-73801387 None:intergenic
CCAGAAGGATATTCAAAGCA+TGG 0.600664 6.2:+73805523 MS.gene93973:CDS
CATAAGCGATGGCATTGCAG+TGG 0.602700 6.2:+73801231 None:intergenic
CCGCATTTGCAAGTTCCAGA+AGG 0.606882 6.2:+73805508 MS.gene93973:CDS
GTTTGTAGATATATACTGGA+AGG 0.627188 6.2:+73804200 MS.gene93973:intron
TATACTGGAAGGCTGAGCAT+AGG 0.629820 6.2:+73804211 MS.gene93973:CDS
AGCTTCAATAGCCACCACAT+AGG 0.668450 6.2:-73801264 None:intergenic
GTGGATGATACTCACCTATG+TGG 0.692942 6.2:+73801250 MS.gene93973:CDS
GATGATACTCACCTATGTGG+TGG 0.722992 6.2:+73801253 MS.gene93973:CDS
GAAGGATATTCAAAGCATGG+AGG 0.736068 6.2:+73805526 MS.gene93973:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATGAGAAATATAAATTT+TGG + chr6.2:73805391-73805410 MS.gene93973:intron 10.0%
!! AAAAAAAATTGTTATCAAAC+AGG - chr6.2:73803277-73803296 None:intergenic 15.0%
!! AATTTACTATATAAATGTCA+TGG - chr6.2:73804844-73804863 None:intergenic 15.0%
!! ATGTATATTTGAACATAATT+TGG + chr6.2:73803832-73803851 MS.gene93973:intron 15.0%
!! ATTTATATGATACATTATCT+TGG + chr6.2:73802466-73802485 MS.gene93973:intron 15.0%
!! GAATATATATAGAAGTAATA+AGG - chr6.2:73804711-73804730 None:intergenic 15.0%
!!! AATGTTTAATTTTTGAGTTT+TGG + chr6.2:73801480-73801499 MS.gene93973:intron 15.0%
!!! ATGTTTAATTTTTGAGTTTT+GGG + chr6.2:73801481-73801500 MS.gene93973:intron 15.0%
!!! ATTTTAAATAATATACCTTG+AGG - chr6.2:73803081-73803100 None:intergenic 15.0%
!!! TAATGATTTAGAATAGAATT+CGG + chr6.2:73802936-73802955 MS.gene93973:intron 15.0%
!!! TAATGATTTAGAATAGAATT+CGG - chr6.2:73802955-73802936 None:intergenic 15.0%
!!! TTTCTTCTTTTTGATTTAAT+GGG + chr6.2:73801417-73801436 MS.gene93973:intron 15.0%
!!! TTTGCATCATTTTTTAAATT+TGG + chr6.2:73802043-73802062 MS.gene93973:intron 15.0%
!!! TTTTAAATAATATACCTTGA+GGG - chr6.2:73803080-73803099 None:intergenic 15.0%
!!! TTTTCTTCTTTTTGATTTAA+TGG + chr6.2:73801416-73801435 MS.gene93973:intron 15.0%
!! AAAGTTACAAAATTAATACC+GGG + chr6.2:73804591-73804610 MS.gene93973:intron 20.0%
!! AAATTACATTACACAAATTC+AGG - chr6.2:73803564-73803583 None:intergenic 20.0%
!! AATTCAAGCAGTTTAATATA+TGG - chr6.2:73804003-73804022 None:intergenic 20.0%
!! AATTTCGACATCAATATAAA+TGG + chr6.2:73803619-73803638 MS.gene93973:intron 20.0%
!! ATATTTGAACATAATTTGGA+TGG + chr6.2:73803836-73803855 MS.gene93973:intron 20.0%
!! CCAAAATCAAATGTAAATTT+CGG + chr6.2:73804619-73804638 MS.gene93973:intron 20.0%
!! GAAAGTTACAAAATTAATAC+CGG + chr6.2:73804590-73804609 MS.gene93973:intron 20.0%
!! GTTAATAACGTTCAAAATTA+TGG - chr6.2:73803742-73803761 None:intergenic 20.0%
!! TTCAAATATACATGATTATC+AGG - chr6.2:73803825-73803844 None:intergenic 20.0%
!! TTGTTTCGTATGAAAATTAA+CGG + chr6.2:73801446-73801465 MS.gene93973:intron 20.0%
!! TTTAACCTTATAATGAATGT+TGG + chr6.2:73805430-73805449 MS.gene93973:intron 20.0%
!! TTTGTATCTAAATGAAAACA+TGG + chr6.2:73805464-73805483 MS.gene93973:intron 20.0%
!!! AATACTTCGAATTTTGTTTT+TGG + chr6.2:73805264-73805283 MS.gene93973:intron 20.0%
!!! AATTTCTTGTTTTTCTGTAA+CGG + chr6.2:73801530-73801549 MS.gene93973:intron 20.0%
!!! AATTTTGTGTGAAAATTGAT+GGG + chr6.2:73801561-73801580 MS.gene93973:intron 20.0%
!!! ACTTGAGACTTAAATTTTAT+CGG + chr6.2:73802814-73802833 MS.gene93973:intron 20.0%
!!! ATTAATGATTTCAAGTATAC+TGG + chr6.2:73804407-73804426 MS.gene93973:intron 20.0%
!!! ATTTTAACACTTGAAAATTG+TGG + chr6.2:73803879-73803898 MS.gene93973:intron 20.0%
!!! ATTTTGAAAGTTTTTCAATC+TGG + chr6.2:73801730-73801749 MS.gene93973:intron 20.0%
!!! CAAATTGCATGTTTTTTTTA+AGG + chr6.2:73805319-73805338 MS.gene93973:intron 20.0%
!!! GAAAACTGTAAGTAATTTTA+CGG + chr6.2:73804284-73804303 MS.gene93973:intron 20.0%
!!! GATTTTATCAAATTTCACTA+CGG - chr6.2:73804963-73804982 None:intergenic 20.0%
!!! TAATTTTGTGTGAAAATTGA+TGG + chr6.2:73801560-73801579 MS.gene93973:intron 20.0%
!!! TGAGAAATATAAATTTTGGA+TGG + chr6.2:73805395-73805414 MS.gene93973:intron 20.0%
!!! TTGAATCTTTTTTGAAACTT+GGG + chr6.2:73803371-73803390 MS.gene93973:intron 20.0%
!!! TTTAAGATTTCTAGTTATCT+GGG + chr6.2:73801838-73801857 MS.gene93973:intron 20.0%
!!! TTTGAATCTTTTTTGAAACT+TGG + chr6.2:73803370-73803389 MS.gene93973:intron 20.0%
!!! TTTTAAGATTTCTAGTTATC+TGG + chr6.2:73801837-73801856 MS.gene93973:intron 20.0%
!!! TTTTGAAAGTTTTTCAATCT+GGG + chr6.2:73801731-73801750 MS.gene93973:intron 20.0%
! AAAATTTAAGTCTCAAGTGT+AGG - chr6.2:73802812-73802831 None:intergenic 25.0%
! AATCATAAAATGTGAAACTC+TGG + chr6.2:73805099-73805118 MS.gene93973:intron 25.0%
! ACGATTTGTGTTCAAAATTA+TGG - chr6.2:73803764-73803783 None:intergenic 25.0%
! AGGGATATGATTATTTATCT+GGG + chr6.2:73803326-73803345 MS.gene93973:intron 25.0%
! ATATAGATCTTCTGATAAAG+TGG - chr6.2:73803504-73803523 None:intergenic 25.0%
! ATATATGGTTAATTACGTTC+AGG - chr6.2:73803988-73804007 None:intergenic 25.0%
! ATATGATACATTATCTTGGA+TGG + chr6.2:73802470-73802489 MS.gene93973:intron 25.0%
! CAATACCAACATTCATTATA+AGG - chr6.2:73805438-73805457 None:intergenic 25.0%
! CAGAAGATCTATATATCATA+TGG + chr6.2:73803510-73803529 MS.gene93973:intron 25.0%
! TAAAAGAGTAAAATGACACA+AGG - chr6.2:73802630-73802649 None:intergenic 25.0%
! TAAATTTGGATGAATTGTGT+TGG + chr6.2:73802057-73802076 MS.gene93973:intron 25.0%
! TAAGCTTCTATAGATAAATG+AGG - chr6.2:73802223-73802242 None:intergenic 25.0%
! TAGGGATATGATTATTTATC+TGG + chr6.2:73803325-73803344 MS.gene93973:intron 25.0%
! TATATGGTTAATTACGTTCA+GGG - chr6.2:73803987-73804006 None:intergenic 25.0%
! TCAATATAAATGGTTAATGC+AGG + chr6.2:73803629-73803648 MS.gene93973:intron 25.0%
! TGATTAATTATCTTGGTATG+TGG + chr6.2:73801696-73801715 MS.gene93973:intron 25.0%
! TGTTTCGTATGAAAATTAAC+GGG + chr6.2:73801447-73801466 MS.gene93973:intron 25.0%
! TTATCTATAGAAGCTTAAGT+TGG + chr6.2:73802226-73802245 MS.gene93973:intron 25.0%
! TTGAAATCTCAAAATGACAA+TGG - chr6.2:73804073-73804092 None:intergenic 25.0%
! TTTGTAGAGACAAAAAAATG+AGG - chr6.2:73805296-73805315 None:intergenic 25.0%
!! AGTTTCACATTTTATGATTG+AGG - chr6.2:73805098-73805117 None:intergenic 25.0%
!! ATATCATATGGTACTTTTGT+GGG + chr6.2:73803522-73803541 MS.gene93973:intron 25.0%
!! ATATTGATTGATTGCAAATG+AGG + chr6.2:73803031-73803050 MS.gene93973:intron 25.0%
!! ATATTGATTGATTGCAAATG+AGG - chr6.2:73803050-73803031 None:intergenic 25.0%
!! ATTCAATTGATAAGCTTTTG+GGG + chr6.2:73801813-73801832 MS.gene93973:intron 25.0%
!! CTAGATTCATAAGTTGAATA+GGG + chr6.2:73803411-73803430 MS.gene93973:intron 25.0%
!! GATTCAATTGATAAGCTTTT+GGG + chr6.2:73801812-73801831 MS.gene93973:intron 25.0%
!! TATATCATATGGTACTTTTG+TGG + chr6.2:73803521-73803540 MS.gene93973:intron 25.0%
!! TGATTCAATTGATAAGCTTT+TGG + chr6.2:73801811-73801830 MS.gene93973:intron 25.0%
!! TTAGGGTTGATTAATTATCT+TGG + chr6.2:73801689-73801708 MS.gene93973:intron 25.0%
!!! AATAAATCTTCGAAAGCATT+TGG + chr6.2:73804467-73804486 MS.gene93973:intron 25.0%
!!! AATCTGGTGTTATTAAATAG+CGG + chr6.2:73804932-73804951 MS.gene93973:intron 25.0%
!!! AATCTTTGTTTTTTGAGTTG+TGG + chr6.2:73801594-73801613 MS.gene93973:intron 25.0%
!!! AGTATTGAATGAGAGTTTTA+GGG - chr6.2:73802736-73802755 None:intergenic 25.0%
!!! ATCTTTGTTTTTTGAGTTGT+GGG + chr6.2:73801595-73801614 MS.gene93973:intron 25.0%
!!! ATGTTTTTTTTAAGGACACA+CGG + chr6.2:73805327-73805346 MS.gene93973:intron 25.0%
!!! ATTGATTTGATACAATACCT+TGG - chr6.2:73802403-73802422 None:intergenic 25.0%
!!! ATTTCTTGTTTTTCTGTAAC+GGG + chr6.2:73801531-73801550 MS.gene93973:intron 25.0%
!!! CCGAAATTTACATTTGATTT+TGG - chr6.2:73804622-73804641 None:intergenic 25.0%
!!! TAGTATTGAATGAGAGTTTT+AGG - chr6.2:73802737-73802756 None:intergenic 25.0%
!!! TCTGGGATGTATTTTTTTTT+TGG + chr6.2:73801748-73801767 MS.gene93973:intron 25.0%
!!! TGGAAAAATCTTTGCTTTTA+GGG + chr6.2:73801672-73801691 MS.gene93973:intron 25.0%
AACACTTTATTCTGTAACAG+AGG - chr6.2:73802577-73802596 None:intergenic 30.0%
AACAGTTAAACTTATGTGCA+GGG - chr6.2:73804660-73804679 None:intergenic 30.0%
AAGTTTAAATACAACCCTCA+AGG - chr6.2:73802654-73802673 None:intergenic 30.0%
ATATGGTTAATTACGTTCAG+GGG - chr6.2:73803986-73804005 None:intergenic 30.0%
ATTCACTTTACCAATAGAGT+AGG - chr6.2:73805212-73805231 None:intergenic 30.0%
ATTTGATACAATACCTTGGA+TGG - chr6.2:73802399-73802418 None:intergenic 30.0%
CAGTTCAATGTAATCACATA+TGG + chr6.2:73801933-73801952 MS.gene93973:intron 30.0%
CTAGATTCAGAAGTTGAATA+GGG + chr6.2:73802083-73802102 MS.gene93973:intron 30.0%
GAAATCATTAATCCAAGCTA+TGG - chr6.2:73804399-73804418 None:intergenic 30.0%
GAACACAAAAACCACATATT+TGG - chr6.2:73803655-73803674 None:intergenic 30.0%
GTCTGTTTGTAGATATATAC+TGG + chr6.2:73804196-73804215 MS.gene93973:intron 30.0%
GTTTGTAGATATATACTGGA+AGG + chr6.2:73804200-73804219 MS.gene93973:intron 30.0%
TAACAGTTAAACTTATGTGC+AGG - chr6.2:73804661-73804680 None:intergenic 30.0%
TAATTATCTTGGTATGTGGT+TGG + chr6.2:73801700-73801719 MS.gene93973:intron 30.0%
TAGAAGTAATAAGGACATGA+AGG - chr6.2:73804702-73804721 None:intergenic 30.0%
TGATTATTTATCTGGGTATG+TGG + chr6.2:73803333-73803352 MS.gene93973:intron 30.0%
TGCATATCACAGAAAATAGT+GGG - chr6.2:73805062-73805081 None:intergenic 30.0%
TGGAAAAATTGATGTGTTTG+TGG + chr6.2:73801652-73801671 MS.gene93973:intron 30.0%
TTGAGGGTTGTATTTAAACT+TGG + chr6.2:73802653-73802672 MS.gene93973:intron 30.0%
TTGCATATCACAGAAAATAG+TGG - chr6.2:73805063-73805082 None:intergenic 30.0%
TTGGAATTTGAAAACGACAA+CGG + chr6.2:73802279-73802298 MS.gene93973:intron 30.0%
! ACATTCTTTGCATGTTTCTA+AGG + chr6.2:73804516-73804535 MS.gene93973:intron 30.0%
! GATATTGAACGTGAGTTTTA+GGG + chr6.2:73802984-73803003 MS.gene93973:intron 30.0%
! GCTAGATTCATAAGTTGAAT+AGG + chr6.2:73803410-73803429 MS.gene93973:intron 30.0%
! GTTATCAAACAGGTCTATTT+TGG - chr6.2:73803267-73803286 None:intergenic 30.0%
! GTTTCATGCACTTTTATGAT+TGG + chr6.2:73804568-73804587 MS.gene93973:intron 30.0%
! GTTTCTGTTTGTTGATTGTT+TGG + chr6.2:73803471-73803490 MS.gene93973:intron 30.0%
! TAAGTTGAAGTTGAAAAACG+TGG - chr6.2:73804113-73804132 None:intergenic 30.0%
! TAATCACATATGGTGTCAAA+CGG + chr6.2:73801943-73801962 MS.gene93973:intron 30.0%
! TGATATTGAACGTGAGTTTT+AGG + chr6.2:73802983-73803002 MS.gene93973:intron 30.0%
! TTCAATTGATAAGCTTTTGG+GGG + chr6.2:73801814-73801833 MS.gene93973:intron 30.0%
!! CTTTTTGAGAAGATCCATAT+AGG + chr6.2:73802163-73802182 MS.gene93973:intron 30.0%
!! GTGGAAAAATCTTTGCTTTT+AGG + chr6.2:73801671-73801690 MS.gene93973:intron 30.0%
!! TAGCGTTGAAATTTTGACAA+TGG - chr6.2:73803158-73803177 None:intergenic 30.0%
!! TCGAAAGCATTTGGTAATAA+AGG + chr6.2:73804476-73804495 MS.gene93973:intron 30.0%
!!! ATCTTTTTTGAAACTTGGGT+TGG + chr6.2:73803375-73803394 MS.gene93973:intron 30.0%
!!! ATTTTACTCTTTTAGCCTTG+AGG + chr6.2:73802636-73802655 MS.gene93973:intron 30.0%
!!! ATTTTTGAGTTTTGGGTTTG+TGG + chr6.2:73801488-73801507 MS.gene93973:intron 30.0%
!!! TATTCTCTTTTGATAGTGTG+TGG + chr6.2:73802130-73802149 MS.gene93973:intron 30.0%
!!! TTTTACTCTTTTAGCCTTGA+GGG + chr6.2:73802637-73802656 MS.gene93973:intron 30.0%
!!! TTTTTGAGTTTTGGGTTTGT+GGG + chr6.2:73801489-73801508 MS.gene93973:intron 30.0%
!!! TTTTTTTTTTCACCAGCTTG+TGG + chr6.2:73803293-73803312 MS.gene93973:intron 30.0%
AAAAAGGAGGTGGTTACAAA+TGG + chr6.2:73802254-73802273 MS.gene93973:intron 35.0%
AAGTGTAAATACAACCCTCA+AGG + chr6.2:73803063-73803082 MS.gene93973:intron 35.0%
AAGTTGAATAGGGCTTAAGA+GGG + chr6.2:73803421-73803440 MS.gene93973:intron 35.0%
AAGTTGAATAGGGCTTAGAA+GGG + chr6.2:73802093-73802112 MS.gene93973:intron 35.0%
AATATAGCATTGCTGTGTAG+CGG + chr6.2:73805025-73805044 MS.gene93973:intron 35.0%
AATGGAAAATGAGTCGAGTT+GGG - chr6.2:73804055-73804074 None:intergenic 35.0%
ATCTTCATCTCCTTATTGCT+TGG + chr6.2:73804747-73804766 MS.gene93973:intron 35.0%
ATGTCTGAGCAGGAAAAAAA+TGG - chr6.2:73805149-73805168 None:intergenic 35.0%
ATTTGGATGAATTGTGTTGG+TGG + chr6.2:73802060-73802079 MS.gene93973:intron 35.0%
CAATTGTGAGACGGTAAAAA+TGG - chr6.2:73802854-73802873 None:intergenic 35.0%
CACTTAGACTCTATTTGGAA+AGG + chr6.2:73803191-73803210 MS.gene93973:intron 35.0%
CAGAGAGAAACAAAGATTAG+TGG - chr6.2:73802373-73802392 None:intergenic 35.0%
CATTAGAATACACTGAGACT+TGG - chr6.2:73802921-73802940 None:intergenic 35.0%
CTTTATTCTGTAACAGAGGA+AGG - chr6.2:73802573-73802592 None:intergenic 35.0%
CTTTCCAAATAGAGTCTAAG+TGG - chr6.2:73803193-73803212 None:intergenic 35.0%
GAGAAGATCCATATAGGATA+GGG + chr6.2:73802169-73802188 MS.gene93973:intron 35.0%
GCTAGATTCAGAAGTTGAAT+AGG + chr6.2:73802082-73802101 MS.gene93973:intron 35.0%
GTGAAATCAGAGAAGTCAAA+CGG - chr6.2:73801337-73801356 None:intergenic 35.0%
GTTAATGATGTTCAACGTAG+TGG + chr6.2:73803901-73803920 MS.gene93973:intron 35.0%
TGAGAAGATCCATATAGGAT+AGG + chr6.2:73802168-73802187 MS.gene93973:intron 35.0%
TGGAATTTGAAAACGACAAC+GGG + chr6.2:73802280-73802299 MS.gene93973:intron 35.0%
TTGAGGGTTGTATTTACACT+TGG - chr6.2:73803064-73803083 None:intergenic 35.0%
TTGGTATCAGACGGTAAAAA+TGG + chr6.2:73802871-73802890 MS.gene93973:intron 35.0%
TTGTACTAGATAGCGTATCA+CGG - chr6.2:73804995-73805014 None:intergenic 35.0%
! ACACGGTATTGTGATTTGTA+GGG + chr6.2:73805344-73805363 MS.gene93973:intron 35.0%
! AGACGGTAAAAATGGATTCT+AGG + chr6.2:73802879-73802898 MS.gene93973:intron 35.0%
! CACTGAGACTTGGATTTTAT+CGG - chr6.2:73802911-73802930 None:intergenic 35.0%
! CATTTTTACCGTCTCACAAT+TGG + chr6.2:73802852-73802871 MS.gene93973:intron 35.0%
! CTGTTTGTTGATTGTTTGGT+AGG + chr6.2:73803475-73803494 MS.gene93973:intron 35.0%
! GACGGTAAAAATGGATTCTA+GGG + chr6.2:73802880-73802899 MS.gene93973:intron 35.0%
! GCATGTTTCTAAGGATTTGT+TGG + chr6.2:73804525-73804544 MS.gene93973:intron 35.0%
! TAAGTTGAATAGGGCTTAAG+AGG + chr6.2:73803420-73803439 MS.gene93973:intron 35.0%
! TAAGTTGGAGTTGAAAAAGG+AGG + chr6.2:73802241-73802260 MS.gene93973:intron 35.0%
! TATGTGGTTTTTGTGTTCAG+TGG + chr6.2:73803657-73803676 MS.gene93973:intron 35.0%
! TTTTCATTGTTCCCTTTGCT+GGG + chr6.2:73801375-73801394 MS.gene93973:CDS 35.0%
!! ATAGGATAGGGTACTTTTGT+GGG + chr6.2:73802181-73802200 MS.gene93973:intron 35.0%
!! CAAAAGTACCCTATCCTATA+TGG - chr6.2:73802180-73802199 None:intergenic 35.0%
!! GCTTAAGTTGGAGTTGAAAA+AGG + chr6.2:73802238-73802257 MS.gene93973:intron 35.0%
!! GTTTGTTGTTGACTTCAATC+TGG + chr6.2:73804916-73804935 MS.gene93973:intron 35.0%
!! TATAGGATAGGGTACTTTTG+TGG + chr6.2:73802180-73802199 MS.gene93973:intron 35.0%
!! TGAAATTTTGACAATGGCAG+CGG - chr6.2:73803152-73803171 None:intergenic 35.0%
!! TGCTAGATTCACTTTTGAGT+TGG + chr6.2:73801772-73801791 MS.gene93973:intron 35.0%
!! TGTGGTTGGTTGTGAAATTT+TGG + chr6.2:73801632-73801651 MS.gene93973:intron 35.0%
!!! AGATTCACTTTTGAGTTGGT+GGG + chr6.2:73801776-73801795 MS.gene93973:intron 35.0%
!!! CATTTGATTTTGGTTCTTCC+CGG - chr6.2:73804612-73804631 None:intergenic 35.0%
!!! TAGATTCACTTTTGAGTTGG+TGG + chr6.2:73801775-73801794 MS.gene93973:intron 35.0%
!!! TTTTTGAGTTGTGGGTTTGT+AGG + chr6.2:73801603-73801622 MS.gene93973:intron 35.0%
AAAACGACAACGGGAAAAGT+TGG + chr6.2:73802289-73802308 MS.gene93973:intron 40.0%
AAACGACAACGGGAAAAGTT+GGG + chr6.2:73802290-73802309 MS.gene93973:intron 40.0%
AAACGGTTCCTCAAAAGCTT+TGG - chr6.2:73801320-73801339 None:intergenic 40.0%
AGGAAGATTGTGAAATGCAG+TGG + chr6.2:73802322-73802341 MS.gene93973:intron 40.0%
AGTGGCTATTGAAAGAGAAG+TGG - chr6.2:73802355-73802374 None:intergenic 40.0%
CAATGGAAAATGAGTCGAGT+TGG - chr6.2:73804056-73804075 None:intergenic 40.0%
CCAGAAGGATATTCAAAGCA+TGG + chr6.2:73805523-73805542 MS.gene93973:CDS 40.0%
GAAAAGTTGGGTAGGTAGAA+AGG + chr6.2:73802302-73802321 MS.gene93973:intron 40.0%
GAAGGATATTCAAAGCATGG+AGG + chr6.2:73805526-73805545 MS.gene93973:CDS 40.0%
GAAGTTGAATAGGGCTTAGA+AGG + chr6.2:73802092-73802111 MS.gene93973:intron 40.0%
GATGATGAAAGACCATAGCT+TGG + chr6.2:73804384-73804403 MS.gene93973:intron 40.0%
GTCTCACAATTGGTATCAGA+CGG + chr6.2:73802862-73802881 MS.gene93973:intron 40.0%
GTCTGATACCAATTGTGAGA+CGG - chr6.2:73802863-73802882 None:intergenic 40.0%
GTTAATGCAGGCCAAATATG+TGG + chr6.2:73803641-73803660 MS.gene93973:intron 40.0%
GTTGAAGTTGAAAAACGTGG+TGG - chr6.2:73804110-73804129 None:intergenic 40.0%
TACCATCAAGCCAAGCAATA+AGG - chr6.2:73804760-73804779 None:intergenic 40.0%
TCAAGTAGAGAGGATGTTAC+AGG - chr6.2:73803128-73803147 None:intergenic 40.0%
TCCAAATAGAGTCTAAGTGG+TGG - chr6.2:73803190-73803209 None:intergenic 40.0%
TCCACCACTTAGACTCTATT+TGG + chr6.2:73803186-73803205 MS.gene93973:intron 40.0%
TCCGCTACAAGCTAGAAATT+TGG - chr6.2:73803217-73803236 None:intergenic 40.0%
TCTAAATGAAAACATGGCCG+TGG + chr6.2:73805470-73805489 MS.gene93973:intron 40.0%
TTGATTGCAAATGAGGCACA+AGG + chr6.2:73803038-73803057 MS.gene93973:intron 40.0%
! CACACGGTATTGTGATTTGT+AGG + chr6.2:73805343-73805362 MS.gene93973:intron 40.0%
! CCATGCTTTGAATATCCTTC+TGG - chr6.2:73805526-73805545 None:intergenic 40.0%
! CTTTTCATTGTTCCCTTTGC+TGG + chr6.2:73801374-73801393 MS.gene93973:CDS 40.0%
! TAGTCTCTGTACGCACTTTT+AGG - chr6.2:73805371-73805390 None:intergenic 40.0%
! TGGTTTTTGTGTTCAGTGGA+TGG + chr6.2:73803661-73803680 MS.gene93973:intron 40.0%
! TTCAACGTAGTGGTTAGTTG+TGG + chr6.2:73803911-73803930 MS.gene93973:intron 40.0%
! TTCCTCAAAAGCTTTGGTGA+AGG - chr6.2:73801314-73801333 None:intergenic 40.0%
! TTCCTTCACCAAAGCTTTTG+AGG + chr6.2:73801309-73801328 MS.gene93973:CDS 40.0%
!! AAACTTGGGTTGGATTGTGT+TGG + chr6.2:73803385-73803404 MS.gene93973:intron 40.0%
!! AATTTCTAGCTTGTAGCGGA+TGG + chr6.2:73803217-73803236 MS.gene93973:intron 40.0%
!! AGCTTGTGGTGGATAGTTTA+GGG + chr6.2:73803307-73803326 MS.gene93973:intron 40.0%
!! GATGGTTGATGACTATCACA+AGG - chr6.2:73803964-73803983 None:intergenic 40.0%
!! GCCAAATTTCTAGCTTGTAG+CGG + chr6.2:73803213-73803232 MS.gene93973:intron 40.0%
!! TTTCTAGTTATCTGGGTGTG+TGG + chr6.2:73801845-73801864 MS.gene93973:intron 40.0%
!! TTTGTAGGTTGGTATGTGGT+TGG + chr6.2:73801618-73801637 MS.gene93973:intron 40.0%
!!! TTTTTTTCACCAGCTTGTGG+TGG + chr6.2:73803296-73803315 MS.gene93973:intron 40.0%
AAGAAGCTGAAACCCAGCAA+AGG - chr6.2:73801390-73801409 None:intergenic 45.0%
AAGGTTGTGAAACACGTTGG+GGG - chr6.2:73802554-73802573 None:intergenic 45.0%
ACACTGACACTTCGGATCAA+AGG - chr6.2:73801994-73802013 None:intergenic 45.0%
AGAAGCTGAAACCCAGCAAA+GGG - chr6.2:73801389-73801408 None:intergenic 45.0%
AGCTTCAATAGCCACCACAT+AGG - chr6.2:73801267-73801286 None:intergenic 45.0%
AGGAAGGTTGTGAAACACGT+TGG - chr6.2:73802557-73802576 None:intergenic 45.0%
CCAAGATCAACGACACTTGA+AGG + chr6.2:73802515-73802534 MS.gene93973:intron 45.0%
CCTCTGTAACACTGACACTT+CGG - chr6.2:73802002-73802021 None:intergenic 45.0%
CTAAACTATCCACCACAAGC+TGG - chr6.2:73803308-73803327 None:intergenic 45.0%
GAAGGTTGTGAAACACGTTG+GGG - chr6.2:73802555-73802574 None:intergenic 45.0%
GAGGTGGTTACAAATGGTGT+TGG + chr6.2:73802260-73802279 MS.gene93973:intron 45.0%
GATGATACTCACCTATGTGG+TGG + chr6.2:73801253-73801272 MS.gene93973:CDS 45.0%
GGAAGGTTGTGAAACACGTT+GGG - chr6.2:73802556-73802575 None:intergenic 45.0%
GGTTAATTACGTTCAGGGGA+TGG - chr6.2:73803982-73804001 None:intergenic 45.0%
GTGGATGATACTCACCTATG+TGG + chr6.2:73801250-73801269 MS.gene93973:CDS 45.0%
GTTGGAGTTGAAAAAGGAGG+TGG + chr6.2:73802244-73802263 MS.gene93973:intron 45.0%
TAAATTTCGGCCATCATCGC+AGG + chr6.2:73804632-73804651 MS.gene93973:intron 45.0%
TATACTGGAAGGCTGAGCAT+AGG + chr6.2:73804211-73804230 MS.gene93973:CDS 45.0%
TGAGTTGTGGGTTTGTAGGT+TGG + chr6.2:73801607-73801626 MS.gene93973:intron 45.0%
TTGCAGCATGCCTACTCTAT+TGG + chr6.2:73805199-73805218 MS.gene93973:CDS 45.0%
TTTCTCTCTGTCTCCATCCA+AGG + chr6.2:73802383-73802402 MS.gene93973:intron 45.0%
TTTGCTGGGTTTCAGCTTCT+TGG + chr6.2:73801389-73801408 MS.gene93973:CDS 45.0%
! AAGGGAACAATGAAAAGCGC+AGG - chr6.2:73801371-73801390 None:intergenic 45.0%
! ACGTAGTGGTTAGTTGTGGT+CGG + chr6.2:73803915-73803934 MS.gene93973:intron 45.0%
! ACTTTTGTGGGATCTACTGG+TGG + chr6.2:73802193-73802212 MS.gene93973:intron 45.0%
! AGAGTCTAAGTGGTGGAGTT+AGG - chr6.2:73803183-73803202 None:intergenic 45.0%
! CCTTCAAGTGTCGTTGATCT+TGG - chr6.2:73802518-73802537 None:intergenic 45.0%
! CTCCTTATTGCTTGGCTTGA+TGG + chr6.2:73804755-73804774 MS.gene93973:intron 45.0%
! GAGTCTAAGTGGTGGAGTTA+GGG - chr6.2:73803182-73803201 None:intergenic 45.0%
! GGTACTTTTGTGGGATCTAC+TGG + chr6.2:73802190-73802209 MS.gene93973:intron 45.0%
! GTGTGTTGGTATGTGTGACT+CGG - chr6.2:73804806-73804825 None:intergenic 45.0%
! TCAAAGGCATGTAAGTTGCC+TGG - chr6.2:73801978-73801997 None:intergenic 45.0%
! TCTTGGTATGTGGTTGGTTG+TGG + chr6.2:73801706-73801725 MS.gene93973:intron 45.0%
! TGAGCTTTGTATGTCTGAGC+AGG - chr6.2:73805159-73805178 None:intergenic 45.0%
!! CAGCTTGTGGTGGATAGTTT+AGG + chr6.2:73803306-73803325 MS.gene93973:intron 45.0%
!! CCTTCTGGAACTTGCAAATG+CGG - chr6.2:73805511-73805530 None:intergenic 45.0%
!! TGGGTTTGTAGGTTGGTATG+TGG + chr6.2:73801614-73801633 MS.gene93973:intron 45.0%
AAAACATGGCCGTGGTGACA+GGG + chr6.2:73805478-73805497 MS.gene93973:intron 50.0%
CCGCATTTGCAAGTTCCAGA+AGG + chr6.2:73805508-73805527 MS.gene93973:CDS 50.0%
GACAACGGGAAAAGTTGGGT+AGG + chr6.2:73802294-73802313 MS.gene93973:intron 50.0%
GGTATATAGCCCTGTCACCA+CGG - chr6.2:73805490-73805509 None:intergenic 50.0%
GTGTGTGTGTGTGTGTGTGT+TGG - chr6.2:73804820-73804839 None:intergenic 50.0%
! CCGAAGTGTCAGTGTTACAG+AGG + chr6.2:73801999-73802018 MS.gene93973:intron 50.0%
! GTCAGTGTTACAGAGGTGTG+TGG + chr6.2:73802006-73802025 MS.gene93973:intron 50.0%
! GTGTTACAGAGGTGTGTGGT+TGG + chr6.2:73802010-73802029 MS.gene93973:intron 50.0%
! TAGTGGTTAGTTGTGGTCGG+TGG + chr6.2:73803918-73803937 MS.gene93973:intron 50.0%
!! ATGAGTCGAGTTGGGTGGAA+AGG - chr6.2:73804047-73804066 None:intergenic 50.0%
!! CTCGGCATCTCTTGCTTTTG+AGG - chr6.2:73804788-73804807 None:intergenic 50.0%
!! CTTGGGTTGGATTGTGTTGG+TGG + chr6.2:73803388-73803407 MS.gene93973:intron 50.0%
!! GGAAAATGAGTCGAGTTGGG+TGG - chr6.2:73804052-73804071 None:intergenic 50.0%
!!! GAGTTTTGGGTTTGTGGGTG+TGG + chr6.2:73801494-73801513 MS.gene93973:intron 50.0%
GAAAACATGGCCGTGGTGAC+AGG + chr6.2:73805477-73805496 MS.gene93973:intron 55.0%
GTCAAACGGTGACACATGCC+AGG + chr6.2:73801957-73801976 MS.gene93973:intron 55.0%
TGGCAGCGGTTCAAGTAGAG+AGG - chr6.2:73803138-73803157 None:intergenic 55.0%
! CAGAGGTGTGTGGTTGGTTG+TGG + chr6.2:73802016-73802035 MS.gene93973:intron 55.0%
!! GTCGAGTTGGGTGGAAAGGA+AGG - chr6.2:73804043-73804062 None:intergenic 55.0%
GTGCAGGGTTCCTGCGATGA+TGG - chr6.2:73804645-73804664 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 73801239 73805577 73801239 ID=MS.gene93973
chr6.2 mRNA 73801239 73805577 73801239 ID=MS.gene93973.t1;Parent=MS.gene93973
chr6.2 exon 73801239 73801410 73801239 ID=MS.gene93973.t1.exon1;Parent=MS.gene93973.t1
chr6.2 CDS 73801239 73801410 73801239 ID=cds.MS.gene93973.t1;Parent=MS.gene93973.t1
chr6.2 exon 73804208 73804290 73804208 ID=MS.gene93973.t1.exon2;Parent=MS.gene93973.t1
chr6.2 CDS 73804208 73804290 73804208 ID=cds.MS.gene93973.t1;Parent=MS.gene93973.t1
chr6.2 exon 73805165 73805220 73805165 ID=MS.gene93973.t1.exon3;Parent=MS.gene93973.t1
chr6.2 CDS 73805165 73805220 73805165 ID=cds.MS.gene93973.t1;Parent=MS.gene93973.t1
chr6.2 exon 73805499 73805577 73805499 ID=MS.gene93973.t1.exon4;Parent=MS.gene93973.t1
chr6.2 CDS 73805499 73805577 73805499 ID=cds.MS.gene93973.t1;Parent=MS.gene93973.t1
Gene Sequence

>MS.gene93973

ATGGCATTGCAGTGGATGATACTCACCTATGTGGTGGCTATTGAAGCTGCTGTAGCGATTCTTCTAACACTTCCTTCACCAAAGCTTTTGAGGAACCGTTTGACTTCTCTGATTTCACTCATTCTTCAACCTGCGCTTTTCATTGTTCCCTTTGCTGGGTTTCAGCTTCTTGGTAATTTTTCTTCTTTTTGATTTAATGGGTTTGTTTTGTTTCGTATGAAAATTAACGGGTATGCATCAAAATGTTTAATTTTTGAGTTTTGGGTTTGTGGGTGTGGTGAAAATTGAGCTAATTTCTTGTTTTTCTGTAACGGGTCTCTTTAATTTTGTGTGAAAATTGATGGGTTTGTAGAAAAATCTTTGTTTTTTGAGTTGTGGGTTTGTAGGTTGGTATGTGGTTGGTTGTGAAATTTTGGAAAAATTGATGTGTTTGTGGAAAAATCTTTGCTTTTAGGGTTGATTAATTATCTTGGTATGTGGTTGGTTGTGGAATTTTGAAAGTTTTTCAATCTGGGATGTATTTTTTTTTTGGTTGCTAGATTCACTTTTGAGTTGGTGGGTGTGCTGAAAATTGATTCAATTGATAAGCTTTTGGGGGTTTTAAGATTTCTAGTTATCTGGGTGTGTGGCTATGTGACACGACATGATGCAGACACTAACACGTCGACACTGATAATAATTTGAGAAAATAACACAGTTCAATGTAATCACATATGGTGTCAAACGGTGACACATGCCAGGCAACTTACATGCCTTTGATCCGAAGTGTCAGTGTTACAGAGGTGTGTGGTTGGTTGTGGAAATTTTGCATCATTTTTTAAATTTGGATGAATTGTGTTGGTGGCTAGATTCAGAAGTTGAATAGGGCTTAGAAGGGTTTGTTGTTTTACTTATTCTCTTTTGATAGTGTGTGGTAGTATTTCGCTTTTTGAGAAGATCCATATAGGATAGGGTACTTTTGTGGGATCTACTGGTGGTAATCCTCATTTATCTATAGAAGCTTAAGTTGGAGTTGAAAAAGGAGGTGGTTACAAATGGTGTTGGAATTTGAAAACGACAACGGGAAAAGTTGGGTAGGTAGAAAGGAAGATTGTGAAATGCAGTGGAAAATGTCCACTTCTCTTTCAATAGCCACTAATCTTTGTTTCTCTCTGTCTCCATCCAAGGTATTGTATCAAATCAATCTCTTTTTTCGCATCAATAACTGATTGATATTAAAGTATAGAGATTTATATGATACATTATCTTGGATGGAGAGTGAAGACACACAAAGAAACCAAGATCAACGACACTTGAAGGAGCATTAAACATTCCCCCAACGTGTTTCACAACCTTCCTCTGTTACAGAATAAAGTGTTAGATATTTAGTTTATTTTAAATAATATTTACCTTGTGTCATTTTACTCTTTTAGCCTTGAGGGTTGTATTTAAACTTGGCTTTGTGCCTCATTTGCAATCAATCAATATTCAACAATTATCTTATTCTCTCTAAAACCCTAAAACTCTCATTCAATACTATTCTCACATGATTTCTCTTTTGTACCGAATTCTATTCTAAATCATTAGAATTCCTACACTTGAGACTTAAATTTTATCGGTTCGTCACTGTAATCCATTTTTACCGTCTCACAATTGGTATCAGACGGTAAAAATGGATTCTAGGGACGAACCGATAAAATCCAAGTCTCAGTGTATTCTAATGATTTAGAATAGAATTCGGTACAAAAGAGAAATCATGTGAGAATGATATTGAACGTGAGTTTTAGGGTTTTAGAGAGAAGATAATTGTTGAATATTGATTGATTGCAAATGAGGCACAAGGCCAAGTGTAAATACAACCCTCAAGGTATATTATTTAAAATAAACTAAATATCTAACACTTTATTCCTGTAACATCCTCTCTACTTGAACCGCTGCCATTGTCAAAATTTCAACGCTAACCCTAACTCCACCACTTAGACTCTATTTGGAAAGGCCAAATTTCTAGCTTGTAGCGGATGGCTTATAGCTTACAAGTTCATATGACCAAAATAGACCTGTTTGATAACAATTTTTTTTTTTTTTCACCAGCTTGTGGTGGATAGTTTAGGGATATGATTATTTATCTGGGTATGTGGTTAGTAGTGAAAAATTTGAATCTTTTTTGAAACTTGGGTTGGATTGTGTTGGTGGCTAGATTCATAAGTTGAATAGGGCTTAAGAGGGTTTTATTGTTTCTTGCTTCTCTTTTTTGTTTCTGTTTGTTGATTGTTTGGTAGGAGTCCACTTTATCAGAAGATCTATATATCATATGGTACTTTTGTGGGATCTACTGGTGCTGATCCTGAATTTGTGTAATGTAATTTTAGCTTTTTATTAGTGTGTGTTATTTTGAAACACAAATTTCGACATCAATATAAATGGTTAATGCAGGCCAAATATGTGGTTTTTGTGTTCAGTGGATGGTTAGTGAATACAACAAGATGTTGAAACTCATTCAACATCTACTAAATACACTTAACCATAATTTTGAACGTTATTAACCATAATTTTGAACACAAATCGTATTTAAATAATTTAATGAATAACATGTTTATCTGAACACCTGATAATCATGTATATTTGAACATAATTTGGATGGATGATAGTTGATATATGTATATTTTAACACTTGAAAATTGTGGTTAATGATGTTCAACGTAGTGGTTAGTTGTGGTCGGTGGATGATTAATGAGTTGTGAAACCTTGTGATAGTCATCAACCATCCCCTGAACGTAATTAACCATATATTAAACTGCTTGAATTATCAATGTGTTTCTCAGCCTTCCTTTCCACCCAACTCGACTCATTTTCCATTGTCATTTTGAGATTTCAACGCTAACTCTAACACCACCACGTTTTTCAACTTCAACTTAAGCTTGTTACAGTAAAAATTCAAAATTACATTACACAGATCTTACATATATGCTTTTTATGTTGTCTGTTTGTAGATATATACTGGAAGGCTGAGCATAGGTTGATGTGTACATCTGATGTTTGTACTGCTGCTGAGAGAGATCGCTATGAGAAAACTGTAAGTAATTTTACGGATGTCAACGTAGCTTATTTGAAGAAATCATAGTTTGCATTGTAAATTGATTGTTGTCTATGTGCTTAATTAACTTTTGATGATGAAAGACCATAGCTTGGATTAATGATTTCAAGTATACTGGTTTAAAATTTTGAGCAATTTTATGAATATTTGATTAAAATAAATCTTCGAAAGCATTTGGTAATAAAGGTTTGAGCAGCTTTGCTTACATTCTTTGCATGTTTCTAAGGATTTGTTGGATTCTCAGATGATTATCATAGTTTCATGCACTTTTATGATTGGAAAGTTACAAAATTAATACCGGGAAGAACCAAAATCAAATGTAAATTTCGGCCATCATCGCAGGAACCCTGCACATAAGTTTAACTGTTATCATTTTAAACTTTACATCCTTCATGTCCTTATTACTTCTATATATATTCTCAACTTTTCGATTCAATCTTCATCTCCTTATTGCTTGGCTTGATGGTAATGTGCCTCAAAAGCAAGAGATGCCGAGTCACACATACCAACACACACACACACACACACACCATGACATTTATATAGTAAATTAGAGTAATTAATAGACGACTTTGTCAACATTAAGTTTTGTTTCGAAATTGTTGTTTGTTGTTGACTTCAATCTGGTGTTATTAAATAGCGGCTATTCCGTAGTGAAATTTGATAAAATCACTATTGTTCCGTGATACGCTATCTAGTACAAAATGTTGTCAAATATAGCATTGCTGTGTAGCGGAATTGCAACAACCCACTATTTTCTGTGATATGCAATTTACAACATTGCCTCAATCATAAAATGTGAAACTCTGGCTGTGTCAGACATTTATTTATTGACCATTTTTTTCCTGCTCAGACATACAAAGCTCAGAGAAATGTGATACTGTGTATTGCAGCATGCCTACTCTATTGGTAAAGTGAATTTCTGTGTCTTTTTGGAATAGAATAAAGAGCAAATACTTCGAATTTTGTTTTTGGTCGTGTCCTCATTTTTTTGTCTCTACAAATCACAAATTGCATGTTTTTTTTAAGGACACACGGTATTGTGATTTGTAGGGACCTAAAAGTGCGTACAGAGACTAAAAATGAGAAATATAAATTTTGGATGGACTAAAAACATATTTAACCTTATAATGAATGTTGGTATTGTCTGTTTTTGTATCTAAATGAAAACATGGCCGTGGTGACAGGGCTATATACCGCATTTGCAAGTTCCAGAAGGATATTCAAAGCATGGAGGAAGTTGAGAAGAGAATCAAGTCGAAGTAG

Protein sequence

>MS.gene93973.t1

MALQWMILTYVVAIEAAVAILLTLPSPKLLRNRLTSLISLILQPALFIVPFAGFQLLDIYWKAEHRLMCTSDVCTAAERDRYEKTTYKAQRNVILCIAACLLYWAIYRICKFQKDIQSMEEVEKRIKSK