Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051362.t1 | XP_013450098.1 | 78.7 | 216 | 33 | 4 | 1 | 206 | 13 | 225 | 5.30E-72 | 281.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051362.t1 | Q9SJR5 | 54.8 | 157 | 52 | 6 | 8 | 152 | 26 | 175 | 3.4e-35 | 150.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051362.t1 | A0A072U430 | 78.7 | 216 | 33 | 4 | 1 | 206 | 13 | 225 | 3.8e-72 | 281.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051362 | MS.gene24648 | 0.832401 | 9.65E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051362.t1 | MTR_7g104050 | 81.818 | 220 | 27 | 4 | 1 | 210 | 13 | 229 | 3.92e-112 | 328 |
| MS.gene051362.t1 | MTR_7g104050 | 81.818 | 220 | 27 | 4 | 1 | 210 | 13 | 229 | 7.67e-112 | 328 |
| MS.gene051362.t1 | MTR_0001s0490 | 56.604 | 106 | 43 | 3 | 63 | 167 | 32 | 135 | 2.32e-32 | 122 |
| MS.gene051362.t1 | MTR_4g125490 | 44.966 | 149 | 65 | 5 | 51 | 192 | 6 | 144 | 4.29e-31 | 120 |
| MS.gene051362.t1 | MTR_2g041430 | 50.413 | 121 | 50 | 4 | 51 | 165 | 4 | 120 | 8.16e-30 | 115 |
| MS.gene051362.t1 | MTR_2g041430 | 50.413 | 121 | 50 | 4 | 51 | 165 | 4 | 120 | 9.96e-30 | 115 |
| MS.gene051362.t1 | MTR_2g041430 | 50.413 | 121 | 50 | 4 | 51 | 165 | 4 | 120 | 1.06e-29 | 115 |
| MS.gene051362.t1 | MTR_8g020560 | 54.286 | 105 | 44 | 3 | 63 | 165 | 18 | 120 | 2.58e-29 | 114 |
| MS.gene051362.t1 | MTR_5g027030 | 56.863 | 102 | 32 | 4 | 63 | 164 | 23 | 112 | 1.43e-28 | 111 |
| MS.gene051362.t1 | MTR_1g017490 | 52.885 | 104 | 45 | 2 | 65 | 164 | 153 | 256 | 7.59e-28 | 112 |
| MS.gene051362.t1 | MTR_1g017490 | 52.885 | 104 | 45 | 2 | 65 | 164 | 20 | 123 | 8.78e-28 | 112 |
| MS.gene051362.t1 | MTR_3g092330 | 42.202 | 109 | 37 | 2 | 63 | 167 | 120 | 206 | 4.63e-21 | 92.8 |
| MS.gene051362.t1 | MTR_8g035910 | 48.305 | 118 | 42 | 6 | 98 | 204 | 75 | 184 | 1.25e-20 | 91.3 |
| MS.gene051362.t1 | MTR_8g035910 | 60.784 | 51 | 20 | 0 | 120 | 170 | 297 | 347 | 3.15e-14 | 72.4 |
| MS.gene051362.t1 | MTR_8g035640 | 58.000 | 50 | 21 | 0 | 120 | 169 | 51 | 100 | 1.83e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051362.t1 | AT2G36400 | 56.977 | 172 | 55 | 6 | 8 | 167 | 26 | 190 | 1.45e-52 | 176 |
| MS.gene051362.t1 | AT3G52910 | 59.477 | 153 | 41 | 5 | 28 | 164 | 47 | 194 | 1.39e-48 | 166 |
| MS.gene051362.t1 | AT4G37740 | 41.026 | 156 | 76 | 5 | 65 | 214 | 173 | 318 | 9.87e-27 | 109 |
| MS.gene051362.t1 | AT3G13960 | 50.962 | 104 | 47 | 3 | 63 | 164 | 23 | 124 | 4.37e-25 | 103 |
| MS.gene051362.t1 | AT2G22840 | 82.979 | 47 | 8 | 0 | 118 | 164 | 193 | 239 | 4.96e-22 | 95.9 |
| MS.gene051362.t1 | AT5G53660 | 44.715 | 123 | 47 | 4 | 53 | 173 | 58 | 161 | 3.92e-21 | 92.0 |
| MS.gene051362.t1 | AT4G24150 | 46.939 | 98 | 48 | 2 | 71 | 164 | 126 | 223 | 2.06e-19 | 87.8 |
| MS.gene051362.t1 | AT4G24150 | 46.939 | 98 | 48 | 2 | 71 | 164 | 164 | 261 | 2.41e-19 | 87.8 |
| MS.gene051362.t1 | AT2G45480 | 43.363 | 113 | 59 | 2 | 51 | 161 | 20 | 129 | 3.39e-19 | 85.9 |
| MS.gene051362.t1 | AT2G06200 | 42.373 | 118 | 43 | 4 | 63 | 162 | 52 | 162 | 4.80e-19 | 85.1 |
| MS.gene051362.t1 | AT2G06200 | 42.373 | 118 | 43 | 4 | 63 | 162 | 13 | 123 | 5.83e-19 | 84.0 |
| MS.gene051362.t1 | AT2G45480 | 43.363 | 113 | 59 | 2 | 51 | 161 | 20 | 129 | 1.97e-18 | 85.1 |
| MS.gene051362.t1 | AT2G45480 | 31.176 | 170 | 72 | 6 | 20 | 182 | 232 | 363 | 2.59e-17 | 81.6 |
| MS.gene051362.t1 | AT2G45480 | 43.363 | 113 | 59 | 2 | 51 | 161 | 18 | 127 | 2.05e-18 | 84.7 |
| MS.gene051362.t1 | AT2G45480 | 31.176 | 170 | 72 | 6 | 20 | 182 | 230 | 361 | 2.57e-17 | 81.6 |
| MS.gene051362.t1 | AT4G24150 | 39.024 | 123 | 46 | 3 | 71 | 164 | 164 | 286 | 2.42e-16 | 79.0 |
| MS.gene051362.t1 | AT2G06200 | 71.111 | 45 | 11 | 1 | 120 | 162 | 7 | 51 | 1.18e-15 | 73.6 |
Find 77 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTACGGATTGTTCGGTTTC+CGG | 0.197448 | 7.4:-6918549 | MS.gene051362:CDS |
| GTGGCAAGAACTTGAGTTAC+AGG | 0.267624 | 7.4:-6919472 | MS.gene051362:CDS |
| CTACGGATTGTTCGGTTTCC+GGG | 0.312910 | 7.4:-6918548 | MS.gene051362:CDS |
| TGAGCAGGGTGAAGAAGTTT+TGG | 0.323925 | 7.4:+6919778 | None:intergenic |
| TGATAATGATGAAGAAAATA+AGG | 0.326826 | 7.4:+6919362 | None:intergenic |
| GGCGGGCCGGTTTGGTCAAC+GGG | 0.332892 | 7.4:+6918588 | None:intergenic |
| TTGATAGGTTGAAGAAGTTC+AGG | 0.344449 | 7.4:+6919407 | None:intergenic |
| TGCAAACGGGCGGGCCGGTT+TGG | 0.357844 | 7.4:+6918580 | None:intergenic |
| ATCCAGAGCCAGGTCGTTGC+CGG | 0.359541 | 7.4:-6919086 | MS.gene051362:CDS |
| GTTCGGTTTCCGGGCGGGTC+GGG | 0.364700 | 7.4:-6918539 | MS.gene051362:CDS |
| CTCGGTTTCTACGGATTGTT+CGG | 0.379168 | 7.4:-6918556 | MS.gene051362:CDS |
| TAGTGTTGCAAAGTGGGTAC+TGG | 0.393066 | 7.4:-6919125 | MS.gene051362:CDS |
| CTCCGGCAACGACCTGGCTC+TGG | 0.400600 | 7.4:+6919084 | None:intergenic |
| CGGCCCGCCCGTTTGCATCT+CGG | 0.407906 | 7.4:-6918574 | MS.gene051362:CDS |
| TGTGCGAGGGATGTGGTGGC+TGG | 0.410154 | 7.4:-6919039 | MS.gene051362:CDS |
| TGTTGGTGGTGTTGATGAGC+AGG | 0.411541 | 7.4:+6919763 | None:intergenic |
| GGGCGGGCCGGTTTGGTCAA+CGG | 0.423457 | 7.4:+6918587 | None:intergenic |
| CAAGTTGGTGACTTTGGTGT+TGG | 0.425449 | 7.4:+6919708 | None:intergenic |
| ATCTGACAAGTTGGTGACTT+TGG | 0.426402 | 7.4:+6919702 | None:intergenic |
| TGTTCGGTTTCCGGGCGGGT+CGG | 0.426713 | 7.4:-6918540 | MS.gene051362:CDS |
| GCCACTGAGATAAGCTGAAA+TGG | 0.433868 | 7.4:+6919490 | None:intergenic |
| GTGACTTTGGTGTTGGGTTG+AGG | 0.434579 | 7.4:+6919715 | None:intergenic |
| ACAAAATACTACTAGTAGCT+TGG | 0.443391 | 7.4:-6918695 | MS.gene051362:CDS |
| CTTACTAGGAAATCTGTTGT+TGG | 0.450424 | 7.4:+6919666 | None:intergenic |
| GGAGCAATGGATCCAGAGCC+AGG | 0.451345 | 7.4:-6919096 | MS.gene051362:CDS |
| CAAAATACTACTAGTAGCTT+GGG | 0.463811 | 7.4:-6918694 | MS.gene051362:CDS |
| AAGTTGGTGACTTTGGTGTT+GGG | 0.464829 | 7.4:+6919709 | None:intergenic |
| TTTAGACCCGTTGACCAAAC+CGG | 0.473034 | 7.4:-6918594 | MS.gene051362:CDS |
| CGTTTGCATCTCGGTTTCTA+CGG | 0.484610 | 7.4:-6918565 | MS.gene051362:CDS |
| CCTAAACAATAGTATGTGCT+AGG | 0.489893 | 7.4:+6918502 | None:intergenic |
| CAAAGTGGGTACTGGGGAAG+AGG | 0.492409 | 7.4:-6919117 | MS.gene051362:CDS |
| GTGGCGGTGTGCGAGGGATG+TGG | 0.497767 | 7.4:-6919046 | MS.gene051362:CDS |
| CGAGATGCAAACGGGCGGGC+CGG | 0.501191 | 7.4:+6918575 | None:intergenic |
| AGTGTTGCAAAGTGGGTACT+GGG | 0.501618 | 7.4:-6919124 | MS.gene051362:CDS |
| GGATTGTTCGGTTTCCGGGC+GGG | 0.501989 | 7.4:-6918544 | MS.gene051362:CDS |
| GTTGGTGTGGGAAGTTCCAC+AGG | 0.502197 | 7.4:+6918964 | None:intergenic |
| TGATTAAAGTGAAGATCAAA+AGG | 0.508625 | 7.4:+6918856 | None:intergenic |
| GTTCCACAGGCTTTCTTGAA+CGG | 0.512655 | 7.4:+6918977 | None:intergenic |
| CGTAGAAACCGAGATGCAAA+CGG | 0.514237 | 7.4:+6918566 | None:intergenic |
| TCTGTTCTCCGGCAACGACC+TGG | 0.516750 | 7.4:+6919078 | None:intergenic |
| TTTGATATTTAGATACATGT+TGG | 0.523687 | 7.4:-6919447 | MS.gene051362:CDS |
| TTGATCTTCACTTTAATCAA+CGG | 0.532715 | 7.4:-6918852 | MS.gene051362:intron |
| ACAAGATTTCCCGACCCGCC+CGG | 0.536765 | 7.4:+6918530 | None:intergenic |
| AAGGAAGTGCAGGTGATTGT+TGG | 0.537153 | 7.4:+6919746 | None:intergenic |
| ACAATAGTATGTGCTAGGGC+TGG | 0.547252 | 7.4:+6918507 | None:intergenic |
| CTTCCCACACCAACTAGTAA+TGG | 0.551902 | 7.4:-6918955 | MS.gene051362:CDS |
| ATCAAAAGGAGATTTGAATG+AGG | 0.554725 | 7.4:+6918870 | None:intergenic |
| GTTGGTGGTGTTGATGAGCA+GGG | 0.556192 | 7.4:+6919764 | None:intergenic |
| ACCGCCATTACTAGTTGGTG+TGG | 0.561256 | 7.4:+6918951 | None:intergenic |
| GTAGAAACCGAGATGCAAAC+GGG | 0.564635 | 7.4:+6918567 | None:intergenic |
| ATATTTAGATACATGTTGGT+TGG | 0.568638 | 7.4:-6919443 | MS.gene051362:CDS |
| CTAAACAATAGTATGTGCTA+GGG | 0.570186 | 7.4:+6918503 | None:intergenic |
| AAAAGGAGATTTGAATGAGG+AGG | 0.578590 | 7.4:+6918873 | None:intergenic |
| TAATGCTGAATCTGACAAGT+TGG | 0.579106 | 7.4:+6919693 | None:intergenic |
| GTACTGGGGAAGAGGAGCAA+TGG | 0.581936 | 7.4:-6919109 | MS.gene051362:CDS |
| GATCCACCGCCATTACTAGT+TGG | 0.583483 | 7.4:+6918946 | None:intergenic |
| GGTACAAACAAAGGAAGTGC+AGG | 0.589399 | 7.4:+6919736 | None:intergenic |
| AAACCGAGATGCAAACGGGC+GGG | 0.597591 | 7.4:+6918571 | None:intergenic |
| GAAGTGCAGGTGATTGTTGG+TGG | 0.603904 | 7.4:+6919749 | None:intergenic |
| GCCATTTCAGCTTATCTCAG+TGG | 0.605314 | 7.4:-6919491 | MS.gene051362:CDS |
| GCGGTGTGCGAGGGATGTGG+TGG | 0.605687 | 7.4:-6919043 | MS.gene051362:CDS |
| AACGGACGGATACGGGTGCA+AGG | 0.611547 | 7.4:+6918648 | None:intergenic |
| ACACCAACTAGTAATGGCGG+TGG | 0.613692 | 7.4:-6918949 | MS.gene051362:CDS |
| CGGATTGTTCGGTTTCCGGG+CGG | 0.624455 | 7.4:-6918545 | MS.gene051362:CDS |
| GGTCGTTGCCGGAGAACAGA+CGG | 0.624707 | 7.4:-6919075 | MS.gene051362:CDS |
| GGTGCAAATAATTGAACCGT+CGG | 0.633818 | 7.4:+6918669 | None:intergenic |
| CCGCCATTACTAGTTGGTGT+GGG | 0.647594 | 7.4:+6918952 | None:intergenic |
| TTGGGTTGAGGTACAAACAA+AGG | 0.648493 | 7.4:+6919727 | None:intergenic |
| AAACCGTTCAAGAAAGCCTG+TGG | 0.653157 | 7.4:-6918980 | MS.gene051362:CDS |
| ATAGGTTGAAGAAGTTCAGG+AGG | 0.653453 | 7.4:+6919410 | None:intergenic |
| ACTAGTAGCTTGGGTACCGA+CGG | 0.656564 | 7.4:-6918685 | MS.gene051362:CDS |
| GAATGAAACTTACATGCTGT+AGG | 0.658238 | 7.4:+6919338 | None:intergenic |
| CCCACACCAACTAGTAATGG+CGG | 0.678913 | 7.4:-6918952 | MS.gene051362:CDS |
| AATGAGGAGGAAGTAACAAG+AGG | 0.678921 | 7.4:+6918886 | None:intergenic |
| GAAACCGAGATGCAAACGGG+CGG | 0.697926 | 7.4:+6918570 | None:intergenic |
| GTGTTGCAAAGTGGGTACTG+GGG | 0.700679 | 7.4:-6919123 | MS.gene051362:CDS |
| TGTGAAAGACACATGCATCG+TGG | 0.747726 | 7.4:-6919006 | MS.gene051362:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTAAATATAGTTAAAAAAT+CGG | + | chr7.4:6919712-6919731 | None:intergenic | 10.0% |
| !! | ATTTACTAATTAAATGACAA+TGG | - | chr7.4:6919526-6919545 | MS.gene051362:intron | 15.0% |
| !! | AAGTAAAAATAATGTTACTG+GGG | + | chr7.4:6919111-6919130 | None:intergenic | 20.0% |
| !! | CAAGTAAAAATAATGTTACT+GGG | + | chr7.4:6919112-6919131 | None:intergenic | 20.0% |
| !! | TAACAAGTTCTTACATTATT+AGG | - | chr7.4:6918792-6918811 | MS.gene051362:intron | 20.0% |
| !! | TTTGATATTTAGATACATGT+TGG | - | chr7.4:6918873-6918892 | MS.gene051362:CDS | 20.0% |
| !!! | TGATAATGATGAAGAAAATA+AGG | + | chr7.4:6918961-6918980 | None:intergenic | 20.0% |
| ! | ACTACAAGTAATTACTCATT+AGG | + | chr7.4:6919566-6919585 | None:intergenic | 25.0% |
| ! | AGTAAAAATAATGTTACTGG+GGG | + | chr7.4:6919110-6919129 | None:intergenic | 25.0% |
| ! | AGTTCTTACATTATTAGGAA+TGG | - | chr7.4:6918797-6918816 | MS.gene051362:intron | 25.0% |
| ! | ATATTTAGATACATGTTGGT+TGG | - | chr7.4:6918877-6918896 | MS.gene051362:CDS | 25.0% |
| ! | CCAAGTAAAAATAATGTTAC+TGG | + | chr7.4:6919113-6919132 | None:intergenic | 25.0% |
| ! | CTAACTCAAAATAACTTACT+AGG | + | chr7.4:6918671-6918690 | None:intergenic | 25.0% |
| ! | GTTCTTACATTATTAGGAAT+GGG | - | chr7.4:6918798-6918817 | MS.gene051362:intron | 25.0% |
| ! | TGATTAAAGTGAAGATCAAA+AGG | + | chr7.4:6919467-6919486 | None:intergenic | 25.0% |
| ! | TTGATCTTCACTTTAATCAA+CGG | - | chr7.4:6919468-6919487 | MS.gene051362:CDS | 25.0% |
| !! | TTTTATTAGTGTTGCAAAGT+GGG | - | chr7.4:6919189-6919208 | MS.gene051362:intron | 25.0% |
| !! | TTTTTATTAGTGTTGCAAAG+TGG | - | chr7.4:6919188-6919207 | MS.gene051362:intron | 25.0% |
| !!! | AGAAAAGAAAGTGTGTTTTT+TGG | + | chr7.4:6919055-6919074 | None:intergenic | 25.0% |
| !!! | AGTTAAAAAATCGGTTTTCA+CGG | + | chr7.4:6919703-6919722 | None:intergenic | 25.0% |
| !!! | CCAGTAACATTATTTTTACT+TGG | - | chr7.4:6919110-6919129 | MS.gene051362:CDS | 25.0% |
| !!! | TGTGTTTTTTGGTTTTGTTT+TGG | + | chr7.4:6919044-6919063 | None:intergenic | 25.0% |
| ACAAAATACTACTAGTAGCT+TGG | - | chr7.4:6919625-6919644 | MS.gene051362:intron | 30.0% | |
| ACATTATTAGGAATGGGAAT+GGG | - | chr7.4:6918804-6918823 | MS.gene051362:intron | 30.0% | |
| ATCAAAAGGAGATTTGAATG+AGG | + | chr7.4:6919453-6919472 | None:intergenic | 30.0% | |
| CAAAATACTACTAGTAGCTT+GGG | - | chr7.4:6919626-6919645 | MS.gene051362:intron | 30.0% | |
| CATGTAAGTTTCATTCTACT+TGG | - | chr7.4:6918989-6919008 | MS.gene051362:CDS | 30.0% | |
| TACATTATTAGGAATGGGAA+TGG | - | chr7.4:6918803-6918822 | MS.gene051362:intron | 30.0% | |
| ! | ACTTTCTTTTCTTCGTGTTT+TGG | - | chr7.4:6919063-6919082 | MS.gene051362:CDS | 30.0% |
| ! | CTACTACATCTTTCTTCTTT+TGG | - | chr7.4:6918758-6918777 | MS.gene051362:intron | 30.0% |
| ! | CTTTCTTTTCTTCGTGTTTT+GGG | - | chr7.4:6919064-6919083 | MS.gene051362:CDS | 30.0% |
| ! | TGAAGAAGACTTTTCTTGAT+AGG | + | chr7.4:6918931-6918950 | None:intergenic | 30.0% |
| !! | GTAAGAACTTGTTAAAGTGT+TGG | + | chr7.4:6918786-6918805 | None:intergenic | 30.0% |
| !! | GTTAAAAAATCGGTTTTCAC+GGG | + | chr7.4:6919702-6919721 | None:intergenic | 30.0% |
| !!! | TTGTTTTGGAGTATGTGATA+TGG | + | chr7.4:6919030-6919049 | None:intergenic | 30.0% |
| AAAAGGAGATTTGAATGAGG+AGG | + | chr7.4:6919450-6919469 | None:intergenic | 35.0% | |
| CTTACTAGGAAATCTGTTGT+TGG | + | chr7.4:6918657-6918676 | None:intergenic | 35.0% | |
| GAATGAAACTTACATGCTGT+AGG | + | chr7.4:6918985-6919004 | None:intergenic | 35.0% | |
| TAATGCTGAATCTGACAAGT+TGG | + | chr7.4:6918630-6918649 | None:intergenic | 35.0% | |
| ! | CATTCTACTTGGTTCTTACA+CGG | - | chr7.4:6919000-6919019 | MS.gene051362:CDS | 35.0% |
| ! | TTGATAGGTTGAAGAAGTTC+AGG | + | chr7.4:6918916-6918935 | None:intergenic | 35.0% |
| !! | AAGAAGTTTTGGCATCTTTG+TGG | + | chr7.4:6918534-6918553 | None:intergenic | 35.0% |
| AATGAGGAGGAAGTAACAAG+AGG | + | chr7.4:6919437-6919456 | None:intergenic | 40.0% | |
| GGTGCAAATAATTGAACCGT+CGG | + | chr7.4:6919654-6919673 | None:intergenic | 40.0% | |
| ! | ACTTTTTACCGTCTGTTCTC+CGG | + | chr7.4:6919256-6919275 | None:intergenic | 40.0% |
| ! | ATAGGTTGAAGAAGTTCAGG+AGG | + | chr7.4:6918913-6918932 | None:intergenic | 40.0% |
| ! | TCGGTTTTCACGGGTAAAAA+CGG | + | chr7.4:6919693-6919712 | None:intergenic | 40.0% |
| ! | TTTTCACGGGTAAAAACGGA+CGG | + | chr7.4:6919689-6919708 | None:intergenic | 40.0% |
| !! | AAGTTGGTGACTTTGGTGTT+GGG | + | chr7.4:6918614-6918633 | None:intergenic | 40.0% |
| !! | ATCTGACAAGTTGGTGACTT+TGG | + | chr7.4:6918621-6918640 | None:intergenic | 40.0% |
| !! | TTGGGTTGAGGTACAAACAA+AGG | + | chr7.4:6918596-6918615 | None:intergenic | 40.0% |
| AAACCGTTCAAGAAAGCCTG+TGG | - | chr7.4:6919340-6919359 | MS.gene051362:intron | 45.0% | |
| AGTGTTGCAAAGTGGGTACT+GGG | - | chr7.4:6919196-6919215 | MS.gene051362:intron | 45.0% | |
| CGTAGAAACCGAGATGCAAA+CGG | + | chr7.4:6919757-6919776 | None:intergenic | 45.0% | |
| CGTTTGCATCTCGGTTTCTA+CGG | - | chr7.4:6919755-6919774 | MS.gene051362:CDS | 45.0% | |
| CTTCCCACACCAACTAGTAA+TGG | - | chr7.4:6919365-6919384 | MS.gene051362:CDS | 45.0% | |
| GAACAGACGGTAAAAAGTGG+CGG | - | chr7.4:6919258-6919277 | MS.gene051362:intron | 45.0% | |
| GCCACTGAGATAAGCTGAAA+TGG | + | chr7.4:6918833-6918852 | None:intergenic | 45.0% | |
| GCCATTTCAGCTTATCTCAG+TGG | - | chr7.4:6918829-6918848 | MS.gene051362:intron | 45.0% | |
| GGAGAACAGACGGTAAAAAG+TGG | - | chr7.4:6919255-6919274 | MS.gene051362:intron | 45.0% | |
| GTAGAAACCGAGATGCAAAC+GGG | + | chr7.4:6919756-6919775 | None:intergenic | 45.0% | |
| GTGGCAAGAACTTGAGTTAC+AGG | - | chr7.4:6918848-6918867 | MS.gene051362:intron | 45.0% | |
| GTTCCACAGGCTTTCTTGAA+CGG | + | chr7.4:6919346-6919365 | None:intergenic | 45.0% | |
| TAGTGTTGCAAAGTGGGTAC+TGG | - | chr7.4:6919195-6919214 | MS.gene051362:intron | 45.0% | |
| TGTGAAAGACACATGCATCG+TGG | - | chr7.4:6919314-6919333 | MS.gene051362:intron | 45.0% | |
| TTTAGACCCGTTGACCAAAC+CGG | - | chr7.4:6919726-6919745 | MS.gene051362:CDS | 45.0% | |
| ! | AAGGAAGTGCAGGTGATTGT+TGG | + | chr7.4:6918577-6918596 | None:intergenic | 45.0% |
| ! | CTCGGTTTCTACGGATTGTT+CGG | - | chr7.4:6919764-6919783 | MS.gene051362:CDS | 45.0% |
| ! | GGTACAAACAAAGGAAGTGC+AGG | + | chr7.4:6918587-6918606 | None:intergenic | 45.0% |
| ! | TCTACGGATTGTTCGGTTTC+CGG | - | chr7.4:6919771-6919790 | MS.gene051362:CDS | 45.0% |
| ! | TGAGCAGGGTGAAGAAGTTT+TGG | + | chr7.4:6918545-6918564 | None:intergenic | 45.0% |
| !! | CAAGTTGGTGACTTTGGTGT+TGG | + | chr7.4:6918615-6918634 | None:intergenic | 45.0% |
| ACACCAACTAGTAATGGCGG+TGG | - | chr7.4:6919371-6919390 | MS.gene051362:CDS | 50.0% | |
| CCCACACCAACTAGTAATGG+CGG | - | chr7.4:6919368-6919387 | MS.gene051362:CDS | 50.0% | |
| CGGGTAAAAACGGACGGATA+CGG | + | chr7.4:6919683-6919702 | None:intergenic | 50.0% | |
| GAAGTGCAGGTGATTGTTGG+TGG | + | chr7.4:6918574-6918593 | None:intergenic | 50.0% | |
| GATCCACCGCCATTACTAGT+TGG | + | chr7.4:6919377-6919396 | None:intergenic | 50.0% | |
| GGGTAAAAACGGACGGATAC+GGG | + | chr7.4:6919682-6919701 | None:intergenic | 50.0% | |
| TAAAAAGTGGCGGTGTGCGA+GGG | - | chr7.4:6919268-6919287 | MS.gene051362:intron | 50.0% | |
| ! | ACCGCCATTACTAGTTGGTG+TGG | + | chr7.4:6919372-6919391 | None:intergenic | 50.0% |
| ! | CCGCCATTACTAGTTGGTGT+GGG | + | chr7.4:6919371-6919390 | None:intergenic | 50.0% |
| ! | CTACGGATTGTTCGGTTTCC+GGG | - | chr7.4:6919772-6919791 | MS.gene051362:CDS | 50.0% |
| ! | GTGTTGCAAAGTGGGTACTG+GGG | - | chr7.4:6919197-6919216 | MS.gene051362:intron | 50.0% |
| !! | ACTAGTAGCTTGGGTACCGA+CGG | - | chr7.4:6919635-6919654 | MS.gene051362:intron | 50.0% |
| !! | GTGACTTTGGTGTTGGGTTG+AGG | + | chr7.4:6918608-6918627 | None:intergenic | 50.0% |
| !! | GTTGGTGGTGTTGATGAGCA+GGG | + | chr7.4:6918559-6918578 | None:intergenic | 50.0% |
| !! | TGTTGGTGGTGTTGATGAGC+AGG | + | chr7.4:6918560-6918579 | None:intergenic | 50.0% |
| AAACCGAGATGCAAACGGGC+GGG | + | chr7.4:6919752-6919771 | None:intergenic | 55.0% | |
| GAAACCGAGATGCAAACGGG+CGG | + | chr7.4:6919753-6919772 | None:intergenic | 55.0% | |
| GTAAAAAGTGGCGGTGTGCG+AGG | - | chr7.4:6919267-6919286 | MS.gene051362:intron | 55.0% | |
| GTACTGGGGAAGAGGAGCAA+TGG | - | chr7.4:6919211-6919230 | MS.gene051362:intron | 55.0% | |
| GTTGGTGTGGGAAGTTCCAC+AGG | + | chr7.4:6919359-6919378 | None:intergenic | 55.0% | |
| !! | CAAAGTGGGTACTGGGGAAG+AGG | - | chr7.4:6919203-6919222 | MS.gene051362:intron | 55.0% |
| AACGGACGGATACGGGTGCA+AGG | + | chr7.4:6919675-6919694 | None:intergenic | 60.0% | |
| ACAAGATTTCCCGACCCGCC+CGG | + | chr7.4:6919793-6919812 | None:intergenic | 60.0% | |
| ATCCAGAGCCAGGTCGTTGC+CGG | - | chr7.4:6919234-6919253 | MS.gene051362:intron | 60.0% | |
| CGGATTGTTCGGTTTCCGGG+CGG | - | chr7.4:6919775-6919794 | MS.gene051362:CDS | 60.0% | |
| GGAGCAATGGATCCAGAGCC+AGG | - | chr7.4:6919224-6919243 | MS.gene051362:intron | 60.0% | |
| GGATTGTTCGGTTTCCGGGC+GGG | - | chr7.4:6919776-6919795 | MS.gene051362:CDS | 60.0% | |
| GGTCGTTGCCGGAGAACAGA+CGG | - | chr7.4:6919245-6919264 | MS.gene051362:intron | 60.0% | |
| TCTGTTCTCCGGCAACGACC+TGG | + | chr7.4:6919245-6919264 | None:intergenic | 60.0% | |
| TGTGCGAGGGATGTGGTGGC+TGG | - | chr7.4:6919281-6919300 | MS.gene051362:intron | 65.0% | |
| TGTTCGGTTTCCGGGCGGGT+CGG | - | chr7.4:6919780-6919799 | MS.gene051362:CDS | 65.0% | |
| CGAGATGCAAACGGGCGGGC+CGG | + | chr7.4:6919748-6919767 | None:intergenic | 70.0% | |
| CGGCCCGCCCGTTTGCATCT+CGG | - | chr7.4:6919746-6919765 | MS.gene051362:CDS | 70.0% | |
| CTCCGGCAACGACCTGGCTC+TGG | + | chr7.4:6919239-6919258 | None:intergenic | 70.0% | |
| GCGGTGTGCGAGGGATGTGG+TGG | - | chr7.4:6919277-6919296 | MS.gene051362:intron | 70.0% | |
| GTGGCGGTGTGCGAGGGATG+TGG | - | chr7.4:6919274-6919293 | MS.gene051362:intron | 70.0% | |
| GTTCGGTTTCCGGGCGGGTC+GGG | - | chr7.4:6919781-6919800 | MS.gene051362:CDS | 70.0% | |
| TGCAAACGGGCGGGCCGGTT+TGG | + | chr7.4:6919743-6919762 | None:intergenic | 70.0% | |
| !! | GGCGGGCCGGTTTGGTCAAC+GGG | + | chr7.4:6919735-6919754 | None:intergenic | 70.0% |
| !! | GGGCGGGCCGGTTTGGTCAA+CGG | + | chr7.4:6919736-6919755 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 6918509 | 6919833 | 6918509 | ID=MS.gene051362 |
| chr7.4 | mRNA | 6918509 | 6919833 | 6918509 | ID=MS.gene051362.t1;Parent=MS.gene051362 |
| chr7.4 | exon | 6919671 | 6919833 | 6919671 | ID=MS.gene051362.t1.exon1;Parent=MS.gene051362.t1 |
| chr7.4 | CDS | 6919671 | 6919833 | 6919671 | ID=cds.MS.gene051362.t1;Parent=MS.gene051362.t1 |
| chr7.4 | exon | 6919351 | 6919512 | 6919351 | ID=MS.gene051362.t1.exon2;Parent=MS.gene051362.t1 |
| chr7.4 | CDS | 6919351 | 6919512 | 6919351 | ID=cds.MS.gene051362.t1;Parent=MS.gene051362.t1 |
| chr7.4 | exon | 6918853 | 6919144 | 6918853 | ID=MS.gene051362.t1.exon3;Parent=MS.gene051362.t1 |
| chr7.4 | CDS | 6918853 | 6919144 | 6918853 | ID=cds.MS.gene051362.t1;Parent=MS.gene051362.t1 |
| chr7.4 | exon | 6918509 | 6918734 | 6918509 | ID=MS.gene051362.t1.exon4;Parent=MS.gene051362.t1 |
| chr7.4 | CDS | 6918509 | 6918734 | 6918509 | ID=cds.MS.gene051362.t1;Parent=MS.gene051362.t1 |
| Gene Sequence |
| Protein sequence |
