Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24648.t1 | XP_013450098.1 | 80.2 | 252 | 32 | 4 | 1 | 247 | 1 | 239 | 6.40E-93 | 350.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24648.t1 | Q9SJR5 | 57.1 | 184 | 55 | 7 | 1 | 169 | 1 | 175 | 1.8e-43 | 177.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24648.t1 | A0A072U430 | 80.2 | 252 | 32 | 4 | 1 | 247 | 1 | 239 | 4.6e-93 | 350.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene24648.t1 | TF | GRF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051361 | MS.gene24648 | 0.881367 | 2.55E-70 | -1.69E-46 |
| MS.gene051362 | MS.gene24648 | 0.832401 | 9.65E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24648.t1 | MTR_7g104050 | 83.730 | 252 | 23 | 4 | 1 | 247 | 1 | 239 | 3.53e-140 | 398 |
| MS.gene24648.t1 | MTR_7g104050 | 83.730 | 252 | 23 | 4 | 1 | 247 | 1 | 239 | 4.14e-140 | 398 |
| MS.gene24648.t1 | MTR_0001s0490 | 61.404 | 114 | 41 | 3 | 72 | 184 | 24 | 135 | 3.09e-40 | 142 |
| MS.gene24648.t1 | MTR_4g125490 | 50.340 | 147 | 51 | 5 | 63 | 202 | 6 | 137 | 5.83e-38 | 137 |
| MS.gene24648.t1 | MTR_8g020560 | 58.407 | 113 | 43 | 3 | 72 | 182 | 10 | 120 | 1.36e-36 | 132 |
| MS.gene24648.t1 | MTR_2g041430 | 55.556 | 126 | 41 | 4 | 63 | 182 | 4 | 120 | 2.33e-36 | 132 |
| MS.gene24648.t1 | MTR_5g027030 | 62.037 | 108 | 29 | 4 | 74 | 181 | 17 | 112 | 2.44e-36 | 131 |
| MS.gene24648.t1 | MTR_2g041430 | 55.556 | 126 | 41 | 4 | 63 | 182 | 4 | 120 | 2.57e-36 | 132 |
| MS.gene24648.t1 | MTR_2g041430 | 55.556 | 126 | 41 | 4 | 63 | 182 | 4 | 120 | 2.80e-36 | 132 |
| MS.gene24648.t1 | MTR_1g017490 | 54.545 | 121 | 43 | 3 | 69 | 181 | 7 | 123 | 7.46e-34 | 128 |
| MS.gene24648.t1 | MTR_1g017490 | 54.701 | 117 | 49 | 2 | 69 | 181 | 140 | 256 | 9.92e-34 | 128 |
| MS.gene24648.t1 | MTR_3g092330 | 42.222 | 135 | 51 | 3 | 55 | 184 | 94 | 206 | 2.72e-27 | 110 |
| MS.gene24648.t1 | MTR_8g035910 | 39.623 | 159 | 61 | 7 | 74 | 221 | 50 | 184 | 8.24e-21 | 90.9 |
| MS.gene24648.t1 | MTR_8g035910 | 60.784 | 51 | 20 | 0 | 137 | 187 | 297 | 347 | 1.34e-14 | 73.2 |
| MS.gene24648.t1 | MTR_8g035640 | 58.000 | 50 | 21 | 0 | 137 | 186 | 51 | 100 | 1.04e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24648.t1 | AT2G36400 | 59.799 | 199 | 56 | 7 | 1 | 184 | 1 | 190 | 1.45e-64 | 206 |
| MS.gene24648.t1 | AT3G52910 | 58.209 | 201 | 57 | 8 | 1 | 181 | 1 | 194 | 1.56e-61 | 198 |
| MS.gene24648.t1 | AT4G37740 | 46.053 | 152 | 66 | 5 | 69 | 214 | 160 | 301 | 1.75e-34 | 130 |
| MS.gene24648.t1 | AT3G13960 | 54.545 | 110 | 46 | 3 | 74 | 181 | 17 | 124 | 3.37e-31 | 119 |
| MS.gene24648.t1 | AT2G22840 | 55.556 | 117 | 42 | 4 | 69 | 181 | 129 | 239 | 1.18e-29 | 116 |
| MS.gene24648.t1 | AT4G24150 | 39.535 | 172 | 86 | 4 | 71 | 224 | 109 | 280 | 3.29e-26 | 106 |
| MS.gene24648.t1 | AT4G24150 | 39.535 | 172 | 86 | 4 | 71 | 224 | 147 | 318 | 4.89e-26 | 105 |
| MS.gene24648.t1 | AT2G06200 | 50.427 | 117 | 47 | 4 | 74 | 179 | 7 | 123 | 1.38e-25 | 101 |
| MS.gene24648.t1 | AT2G06200 | 50.427 | 117 | 47 | 4 | 74 | 179 | 46 | 162 | 1.42e-25 | 102 |
| MS.gene24648.t1 | AT5G53660 | 47.899 | 119 | 43 | 3 | 74 | 190 | 60 | 161 | 2.02e-25 | 103 |
| MS.gene24648.t1 | AT4G24150 | 35.533 | 197 | 84 | 5 | 71 | 224 | 147 | 343 | 1.21e-22 | 96.7 |
| MS.gene24648.t1 | AT2G45480 | 48.039 | 102 | 53 | 0 | 77 | 178 | 28 | 129 | 5.66e-22 | 92.8 |
| MS.gene24648.t1 | AT2G45480 | 48.039 | 102 | 53 | 0 | 77 | 178 | 28 | 129 | 2.53e-21 | 92.4 |
| MS.gene24648.t1 | AT2G45480 | 45.977 | 87 | 31 | 3 | 120 | 199 | 286 | 363 | 2.12e-17 | 81.3 |
| MS.gene24648.t1 | AT2G45480 | 48.039 | 102 | 53 | 0 | 77 | 178 | 26 | 127 | 2.66e-21 | 92.4 |
| MS.gene24648.t1 | AT2G45480 | 45.977 | 87 | 31 | 3 | 120 | 199 | 284 | 361 | 2.23e-17 | 81.3 |
| MS.gene24648.t1 | AT2G06200 | 71.111 | 45 | 11 | 1 | 137 | 179 | 7 | 51 | 8.16e-16 | 73.6 |
Find 61 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGCAAGAACTTGAGTTAC+AGG | 0.267624 | 7.4:+6876086 | MS.gene24648:CDS |
| TGAGCAGGGTGAAGAAGTTT+TGG | 0.323925 | 7.4:-6875780 | None:intergenic |
| TGATAATGATGAAGAAAATA+AGG | 0.326826 | 7.4:-6876195 | None:intergenic |
| TTGATAGGTTGAAGAAGTTC+AGG | 0.344449 | 7.4:-6876150 | None:intergenic |
| ATCCAGAGCCAGGTCGTTGC+CGG | 0.359541 | 7.4:+6876472 | MS.gene24648:CDS |
| CACTTAGCTGAGGTGGCATC+AGG | 0.370292 | 7.4:+6877817 | MS.gene24648:intron |
| TAGTGTTGCAAAGTGGGTAC+TGG | 0.393066 | 7.4:+6876433 | MS.gene24648:intron |
| CTCCGGCAACGACCTGGCTC+TGG | 0.400600 | 7.4:-6876474 | None:intergenic |
| TGTGCGAGGGATGTGGTGGC+TGG | 0.410154 | 7.4:+6876519 | MS.gene24648:CDS |
| TGTTGGTGGTGTTGATGAGC+AGG | 0.411541 | 7.4:-6875795 | None:intergenic |
| CAAGTTGGTGACTTTGGTGT+TGG | 0.425449 | 7.4:-6875850 | None:intergenic |
| ATCTGACAAGTTGGTGACTT+TGG | 0.426402 | 7.4:-6875856 | None:intergenic |
| CTCCACATGTATCTAAAGTC+TGG | 0.428042 | 7.4:-6877847 | None:intergenic |
| GCCACTGAGATAAGCTGAAA+TGG | 0.433868 | 7.4:-6876068 | None:intergenic |
| GTGACTTTGGTGTTGGGTTG+AGG | 0.434579 | 7.4:-6875843 | None:intergenic |
| CTTACTAGGAAATCTGTTGT+TGG | 0.450424 | 7.4:-6875892 | None:intergenic |
| GGAGCAATGGATCCAGAGCC+AGG | 0.451345 | 7.4:+6876462 | MS.gene24648:CDS |
| GTTTCTCTGACTCATGCTGT+TGG | 0.459512 | 7.4:-6875740 | None:intergenic |
| AAGTTGGTGACTTTGGTGTT+GGG | 0.464829 | 7.4:-6875849 | None:intergenic |
| TACATTATTAGGAATGGGAA+TGG | 0.465443 | 7.4:+6876041 | MS.gene24648:intron |
| CAAAGTGGGTACTGGGGAAG+AGG | 0.492409 | 7.4:+6876441 | MS.gene24648:CDS |
| GTGGCGGTGTGCGAGGGATG+TGG | 0.497767 | 7.4:+6876512 | MS.gene24648:CDS |
| AGTGTTGCAAAGTGGGTACT+GGG | 0.501618 | 7.4:+6876434 | MS.gene24648:intron |
| GTTGGTGTGGGAAGTTCCAC+AGG | 0.502197 | 7.4:-6876594 | None:intergenic |
| TGATTAAAGTGAAGATCAAA+AGG | 0.508625 | 7.4:-6876702 | None:intergenic |
| GTTCCACAGGCTTTCTTGAA+CGG | 0.512655 | 7.4:-6876581 | None:intergenic |
| TCTGTTCTCCGGCAACGACC+TGG | 0.516750 | 7.4:-6876480 | None:intergenic |
| ACATTATTAGGAATGGGAAT+GGG | 0.520045 | 7.4:+6876042 | MS.gene24648:intron |
| TTTGATATTTAGATACATGT+TGG | 0.524543 | 7.4:+6876110 | MS.gene24648:CDS |
| TTGTTTCGTATGAAAGTCCA+TGG | 0.526188 | 7.4:-6875709 | None:intergenic |
| TTGATCTTCACTTTAATCAA+CGG | 0.532715 | 7.4:+6876706 | MS.gene24648:CDS |
| AAGGAAGTGCAGGTGATTGT+TGG | 0.537153 | 7.4:-6875812 | None:intergenic |
| CTTAGCTGAGGTGGCATCAG+GGG | 0.547485 | 7.4:+6877819 | MS.gene24648:intron |
| CTTCCCACACCAACTAGTAA+TGG | 0.551902 | 7.4:+6876603 | MS.gene24648:CDS |
| ATCAAAAGGAGATTTGAATG+AGG | 0.554725 | 7.4:-6876688 | None:intergenic |
| GTTGGTGGTGTTGATGAGCA+GGG | 0.556192 | 7.4:-6875794 | None:intergenic |
| ACCGCCATTACTAGTTGGTG+TGG | 0.561256 | 7.4:-6876607 | None:intergenic |
| ATATTTAGATACATGTTGGT+TGG | 0.568638 | 7.4:+6876114 | MS.gene24648:CDS |
| AAAAGGAGATTTGAATGAGG+AGG | 0.578590 | 7.4:-6876685 | None:intergenic |
| TAATGCTGAATCTGACAAGT+TGG | 0.579106 | 7.4:-6875865 | None:intergenic |
| GTACTGGGGAAGAGGAGCAA+TGG | 0.581936 | 7.4:+6876449 | MS.gene24648:CDS |
| GATCCACCGCCATTACTAGT+TGG | 0.583483 | 7.4:-6876612 | None:intergenic |
| AGCTGAGGTGGCATCAGGGG+CGG | 0.586071 | 7.4:+6877822 | MS.gene24648:intron |
| GGTACAAACAAAGGAAGTGC+AGG | 0.589399 | 7.4:-6875822 | None:intergenic |
| GAAGTGCAGGTGATTGTTGG+TGG | 0.603904 | 7.4:-6875809 | None:intergenic |
| GCCATTTCAGCTTATCTCAG+TGG | 0.605314 | 7.4:+6876067 | MS.gene24648:CDS |
| GCGGTGTGCGAGGGATGTGG+TGG | 0.605687 | 7.4:+6876515 | MS.gene24648:CDS |
| ACTTAGCTGAGGTGGCATCA+GGG | 0.606830 | 7.4:+6877818 | MS.gene24648:intron |
| ACACCAACTAGTAATGGCGG+TGG | 0.613692 | 7.4:+6876609 | MS.gene24648:CDS |
| GGTCGTTGCCGGAGAACAGA+CGG | 0.624707 | 7.4:+6876483 | MS.gene24648:CDS |
| TGGACTTTCATACGAAACAA+TGG | 0.628358 | 7.4:+6875712 | MS.gene24648:CDS |
| ATCCAGACTTTAGATACATG+TGG | 0.636745 | 7.4:+6877845 | MS.gene24648:CDS |
| CCGCCATTACTAGTTGGTGT+GGG | 0.647594 | 7.4:-6876606 | None:intergenic |
| TTGGGTTGAGGTACAAACAA+AGG | 0.648493 | 7.4:-6875831 | None:intergenic |
| AAACCGTTCAAGAAAGCCTG+TGG | 0.653157 | 7.4:+6876578 | MS.gene24648:CDS |
| ATAGGTTGAAGAAGTTCAGG+AGG | 0.653453 | 7.4:-6876147 | None:intergenic |
| GAATGAAACTTACATGCTGT+AGG | 0.658238 | 7.4:-6876219 | None:intergenic |
| CCCACACCAACTAGTAATGG+CGG | 0.678913 | 7.4:+6876606 | MS.gene24648:CDS |
| AATGAGGAGGAAGTAACAAG+AGG | 0.678921 | 7.4:-6876672 | None:intergenic |
| GTGTTGCAAAGTGGGTACTG+GGG | 0.700679 | 7.4:+6876435 | MS.gene24648:intron |
| TGTGAAAGACACATGCATCG+TGG | 0.747726 | 7.4:+6876552 | MS.gene24648:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAATCTTTAATAAGAT+TGG | + | chr7.4:6877136-6877155 | MS.gene24648:intron | 10.0% |
| !! | TCTAAATATAGTTAAAAAAT+CGG | - | chr7.4:6876952-6876971 | None:intergenic | 10.0% |
| !! | ATTTACTAATTAAATGACAA+TGG | + | chr7.4:6876764-6876783 | MS.gene24648:intron | 15.0% |
| !! | ATTTATGTATAATCTACTAA+CGG | - | chr7.4:6877113-6877132 | None:intergenic | 15.0% |
| !! | CATAAAGATTAAAAATCATA+TGG | - | chr7.4:6877562-6877581 | None:intergenic | 15.0% |
| !!! | AAATATCCATTTTTTTTCTT+AGG | - | chr7.4:6877731-6877750 | None:intergenic | 15.0% |
| !!! | AATATCCATTTTTTTTCTTA+GGG | - | chr7.4:6877730-6877749 | None:intergenic | 15.0% |
| !!! | AATTTAGTTTTAGAAAGAAA+CGG | - | chr7.4:6877517-6877536 | None:intergenic | 15.0% |
| !!! | CATATGATTTTTAATCTTTA+TGG | + | chr7.4:6877560-6877579 | MS.gene24648:intron | 15.0% |
| !! | AAGATTAAAAATCATATGGA+CGG | - | chr7.4:6877558-6877577 | None:intergenic | 20.0% |
| !! | AAGTAAAAATAATGTTACTG+GGG | - | chr7.4:6876349-6876368 | None:intergenic | 20.0% |
| !! | CAAGTAAAAATAATGTTACT+GGG | - | chr7.4:6876350-6876369 | None:intergenic | 20.0% |
| !! | TAAATCTTTAATAAGATTGG+TGG | + | chr7.4:6877139-6877158 | MS.gene24648:intron | 20.0% |
| !! | TAACAAGTTCTTACATTATT+AGG | + | chr7.4:6876030-6876049 | MS.gene24648:intron | 20.0% |
| !! | TACTAGTAGTAATTATAAGT+GGG | + | chr7.4:6877633-6877652 | MS.gene24648:intron | 20.0% |
| !! | TTTAAGCCTTAAAGTTAATT+AGG | - | chr7.4:6877664-6877683 | None:intergenic | 20.0% |
| !! | TTTGATATTTAGATACATGT+TGG | + | chr7.4:6876110-6876129 | MS.gene24648:CDS | 20.0% |
| !!! | AATTCAAACTTACTTTTTGA+AGG | - | chr7.4:6877333-6877352 | None:intergenic | 20.0% |
| !!! | ATATCCATTTTTTTTCTTAG+GGG | - | chr7.4:6877729-6877748 | None:intergenic | 20.0% |
| !!! | TGATAATGATGAAGAAAATA+AGG | - | chr7.4:6876198-6876217 | None:intergenic | 20.0% |
| !!! | TTTTGTCATCTTTTTAAGAT+GGG | + | chr7.4:6877299-6877318 | MS.gene24648:intron | 20.0% |
| ! | AAAATACTACTAGTAGCTTT+GGG | + | chr7.4:6876866-6876885 | MS.gene24648:intron | 25.0% |
| ! | AAAATCAGCAAATCAAAAGA+GGG | - | chr7.4:6877772-6877791 | None:intergenic | 25.0% |
| ! | ACTACAAGTAATTACTCATT+AGG | - | chr7.4:6876804-6876823 | None:intergenic | 25.0% |
| ! | AGTAAAAATAATGTTACTGG+GGG | - | chr7.4:6876348-6876367 | None:intergenic | 25.0% |
| ! | AGTTCTTACATTATTAGGAA+TGG | + | chr7.4:6876035-6876054 | MS.gene24648:intron | 25.0% |
| ! | ATATTTAGATACATGTTGGT+TGG | + | chr7.4:6876114-6876133 | MS.gene24648:CDS | 25.0% |
| ! | ATTATTTGAACCAAATCCAA+AGG | - | chr7.4:6877488-6877507 | None:intergenic | 25.0% |
| ! | CCAAGTAAAAATAATGTTAC+TGG | - | chr7.4:6876351-6876370 | None:intergenic | 25.0% |
| ! | CTAACTCAAAATAACTTACT+AGG | - | chr7.4:6875909-6875928 | None:intergenic | 25.0% |
| ! | GTACTAGTAGTAATTATAAG+TGG | + | chr7.4:6877632-6877651 | MS.gene24648:intron | 25.0% |
| ! | GTCATACCTAATTAACTTTA+AGG | + | chr7.4:6877655-6877674 | MS.gene24648:intron | 25.0% |
| ! | GTTCTTACATTATTAGGAAT+GGG | + | chr7.4:6876036-6876055 | MS.gene24648:intron | 25.0% |
| ! | TAATTACACCTTCCATTATT+TGG | - | chr7.4:6877366-6877385 | None:intergenic | 25.0% |
| ! | TGATTAAAGTGAAGATCAAA+AGG | - | chr7.4:6876705-6876724 | None:intergenic | 25.0% |
| ! | TTGATCTTCACTTTAATCAA+CGG | + | chr7.4:6876706-6876725 | MS.gene24648:CDS | 25.0% |
| ! | TTTGATGCATAACCAAATAA+TGG | + | chr7.4:6877351-6877370 | MS.gene24648:intron | 25.0% |
| !! | TTTTATTAGTGTTGCAAAGT+GGG | + | chr7.4:6876427-6876446 | MS.gene24648:intron | 25.0% |
| !! | TTTTTATTAGTGTTGCAAAG+TGG | + | chr7.4:6876426-6876445 | MS.gene24648:intron | 25.0% |
| !!! | AGAAAAGAAAGTGTGTTTTT+TGG | - | chr7.4:6876293-6876312 | None:intergenic | 25.0% |
| !!! | AGTTAAAAAATCGGTTTTCA+CGG | - | chr7.4:6876943-6876962 | None:intergenic | 25.0% |
| !!! | CCAGTAACATTATTTTTACT+TGG | + | chr7.4:6876348-6876367 | MS.gene24648:intron | 25.0% |
| !!! | CTTTTGTCATCTTTTTAAGA+TGG | + | chr7.4:6877298-6877317 | MS.gene24648:intron | 25.0% |
| !!! | TATCCATTTTTTTTCTTAGG+GGG | - | chr7.4:6877728-6877747 | None:intergenic | 25.0% |
| !!! | TGTGTTTTTTGGTTTTGTTT+TGG | - | chr7.4:6876282-6876301 | None:intergenic | 25.0% |
| AATAATGAAGCCTTTGGATT+TGG | + | chr7.4:6877475-6877494 | MS.gene24648:intron | 30.0% | |
| AATTAGTTCAACATTGTGAC+AGG | + | chr7.4:6877381-6877400 | MS.gene24648:intron | 30.0% | |
| AATTTCAAACTTGAACCAAG+TGG | - | chr7.4:6877087-6877106 | None:intergenic | 30.0% | |
| ACATTATTAGGAATGGGAAT+GGG | + | chr7.4:6876042-6876061 | MS.gene24648:intron | 30.0% | |
| ATACTATTGTAGTACGACAT+TGG | - | chr7.4:6877609-6877628 | None:intergenic | 30.0% | |
| ATCAAAAGGAGATTTGAATG+AGG | - | chr7.4:6876691-6876710 | None:intergenic | 30.0% | |
| ATGAAGATCATTTAATCCAG+TGG | + | chr7.4:6877242-6877261 | MS.gene24648:intron | 30.0% | |
| ATTCTACTTGGTTTCTTACA+CGG | + | chr7.4:6876238-6876257 | MS.gene24648:intron | 30.0% | |
| CAAAATACTACTAGTAGCTT+TGG | + | chr7.4:6876865-6876884 | MS.gene24648:intron | 30.0% | |
| CAAAATCAGCAAATCAAAAG+AGG | - | chr7.4:6877773-6877792 | None:intergenic | 30.0% | |
| CATGTAAGTTTCATTCTACT+TGG | + | chr7.4:6876226-6876245 | MS.gene24648:intron | 30.0% | |
| CTAAACAATAGTATGTGCTA+GGG | - | chr7.4:6877060-6877079 | None:intergenic | 30.0% | |
| GACAGAAAAAAAAGTTGTTC+TGG | - | chr7.4:6877279-6877298 | None:intergenic | 30.0% | |
| TACATTATTAGGAATGGGAA+TGG | + | chr7.4:6876041-6876060 | MS.gene24648:intron | 30.0% | |
| TGAAGATCATTTAATCCAGT+GGG | + | chr7.4:6877243-6877262 | MS.gene24648:intron | 30.0% | |
| TTGCCAAGTATGAAACATAT+TGG | - | chr7.4:6877456-6877475 | None:intergenic | 30.0% | |
| ! | ACTTTCTTTTCTTCGTGTTT+TGG | + | chr7.4:6876301-6876320 | MS.gene24648:intron | 30.0% |
| ! | ATCGCAACTATTTGAAACAT+AGG | - | chr7.4:6877700-6877719 | None:intergenic | 30.0% |
| ! | ATGCATAACCAAATAATGGA+AGG | + | chr7.4:6877355-6877374 | MS.gene24648:intron | 30.0% |
| ! | CTACTACATCTTTCTTCTTT+TGG | + | chr7.4:6875996-6876015 | MS.gene24648:intron | 30.0% |
| ! | CTTTCTTTTCTTCGTGTTTT+GGG | + | chr7.4:6876302-6876321 | MS.gene24648:intron | 30.0% |
| ! | TCGCAACTATTTGAAACATA+GGG | - | chr7.4:6877699-6877718 | None:intergenic | 30.0% |
| ! | TGAAGAAGACTTTTCTTGAT+AGG | - | chr7.4:6876168-6876187 | None:intergenic | 30.0% |
| !! | GTAAGAACTTGTTAAAGTGT+TGG | - | chr7.4:6876024-6876043 | None:intergenic | 30.0% |
| !! | GTTAAAAAATCGGTTTTCAC+GGG | - | chr7.4:6876942-6876961 | None:intergenic | 30.0% |
| !!! | AGTTTTAGAAAGAAACGGTT+GGG | - | chr7.4:6877512-6877531 | None:intergenic | 30.0% |
| !!! | TAGTTTTAGAAAGAAACGGT+TGG | - | chr7.4:6877513-6877532 | None:intergenic | 30.0% |
| !!! | TTGTTTTGGAGTATGTGATA+TGG | - | chr7.4:6876268-6876287 | None:intergenic | 30.0% |
| AAAAGGAGATTTGAATGAGG+AGG | - | chr7.4:6876688-6876707 | None:intergenic | 35.0% | |
| ACTGATACCAAACTGAGATA+CGG | + | chr7.4:6877409-6877428 | MS.gene24648:intron | 35.0% | |
| ATCCAGACTTTAGATACATG+TGG | + | chr7.4:6877845-6877864 | MS.gene24648:CDS | 35.0% | |
| CCTAAACAATAGTATGTGCT+AGG | - | chr7.4:6877061-6877080 | None:intergenic | 35.0% | |
| CCTAGCACATACTATTGTTT+AGG | + | chr7.4:6877058-6877077 | MS.gene24648:intron | 35.0% | |
| CTTACTAGGAAATCTGTTGT+TGG | - | chr7.4:6875895-6875914 | None:intergenic | 35.0% | |
| GAATGAAACTTACATGCTGT+AGG | - | chr7.4:6876222-6876241 | None:intergenic | 35.0% | |
| TAATGCTGAATCTGACAAGT+TGG | - | chr7.4:6875868-6875887 | None:intergenic | 35.0% | |
| TGACCCCCTAAGAAAAAAAA+TGG | + | chr7.4:6877722-6877741 | MS.gene24648:intron | 35.0% | |
| TGGACTTTCATACGAAACAA+TGG | + | chr7.4:6875712-6875731 | MS.gene24648:CDS | 35.0% | |
| TGGCCAATATGTTTCATACT+TGG | + | chr7.4:6877450-6877469 | MS.gene24648:intron | 35.0% | |
| TTGGCAAATAATGAAGCCTT+TGG | + | chr7.4:6877469-6877488 | MS.gene24648:intron | 35.0% | |
| ! | CGCAACTATTTGAAACATAG+GGG | - | chr7.4:6877698-6877717 | None:intergenic | 35.0% |
| ! | TTGATAGGTTGAAGAAGTTC+AGG | - | chr7.4:6876153-6876172 | None:intergenic | 35.0% |
| !! | AAGAAGTTTTGGCATCTTTG+TGG | - | chr7.4:6875772-6875791 | None:intergenic | 35.0% |
| !!! | GTTTTAGAAAGAAACGGTTG+GGG | - | chr7.4:6877511-6877530 | None:intergenic | 35.0% |
| !!! | TATTTTGACCCCCTATGTTT+TGG | + | chr7.4:6877746-6877765 | MS.gene24648:intron | 35.0% |
| AAAAGAGGGCCAAAACATAG+GGG | - | chr7.4:6877758-6877777 | None:intergenic | 40.0% | |
| AATGAGGAGGAAGTAACAAG+AGG | - | chr7.4:6876675-6876694 | None:intergenic | 40.0% | |
| CAAAAGAGGGCCAAAACATA+GGG | - | chr7.4:6877759-6877778 | None:intergenic | 40.0% | |
| GGTGCAAATAATTGAACCGT+CGG | - | chr7.4:6876894-6876913 | None:intergenic | 40.0% | |
| TCAAAAGAGGGCCAAAACAT+AGG | - | chr7.4:6877760-6877779 | None:intergenic | 40.0% | |
| ! | ACTTTTTACCGTCTGTTCTC+CGG | - | chr7.4:6876494-6876513 | None:intergenic | 40.0% |
| ! | ATAGGTTGAAGAAGTTCAGG+AGG | - | chr7.4:6876150-6876169 | None:intergenic | 40.0% |
| ! | CTCCACATGTATCTAAAGTC+TGG | - | chr7.4:6877850-6877869 | None:intergenic | 40.0% |
| ! | TCGGTTTTCACGGGTAAAAA+CGG | - | chr7.4:6876933-6876952 | None:intergenic | 40.0% |
| ! | TTTTCACGGGTAAAAACGGA+CGG | - | chr7.4:6876929-6876948 | None:intergenic | 40.0% |
| !! | AAGTTGGTGACTTTGGTGTT+GGG | - | chr7.4:6875852-6875871 | None:intergenic | 40.0% |
| !! | ATCTGACAAGTTGGTGACTT+TGG | - | chr7.4:6875859-6875878 | None:intergenic | 40.0% |
| !! | CTATTGTTTAGGTTGCCACT+TGG | + | chr7.4:6877069-6877088 | MS.gene24648:intron | 40.0% |
| !! | TTGGGTTGAGGTACAAACAA+AGG | - | chr7.4:6875834-6875853 | None:intergenic | 40.0% |
| AAACCGTTCAAGAAAGCCTG+TGG | + | chr7.4:6876578-6876597 | MS.gene24648:CDS | 45.0% | |
| AAAGAGGGCCAAAACATAGG+GGG | - | chr7.4:6877757-6877776 | None:intergenic | 45.0% | |
| ACAATAGTATGTGCTAGGGC+TGG | - | chr7.4:6877056-6877075 | None:intergenic | 45.0% | |
| ACTTGACACATGGACGTTGA+TGG | - | chr7.4:6877797-6877816 | None:intergenic | 45.0% | |
| AGTGTTGCAAAGTGGGTACT+GGG | + | chr7.4:6876434-6876453 | MS.gene24648:intron | 45.0% | |
| CAGCTAAGTGACTTGACACA+TGG | - | chr7.4:6877807-6877826 | None:intergenic | 45.0% | |
| CGTAGAAACCGAGATGCAAA+CGG | - | chr7.4:6876997-6877016 | None:intergenic | 45.0% | |
| CGTTTGCATCTCGGTTTCTA+CGG | + | chr7.4:6876995-6877014 | MS.gene24648:intron | 45.0% | |
| CTTCCCACACCAACTAGTAA+TGG | + | chr7.4:6876603-6876622 | MS.gene24648:CDS | 45.0% | |
| GAACAGACGGTAAAAAGTGG+CGG | + | chr7.4:6876496-6876515 | MS.gene24648:CDS | 45.0% | |
| GCCACTGAGATAAGCTGAAA+TGG | - | chr7.4:6876071-6876090 | None:intergenic | 45.0% | |
| GCCATTTCAGCTTATCTCAG+TGG | + | chr7.4:6876067-6876086 | MS.gene24648:CDS | 45.0% | |
| GGAGAACAGACGGTAAAAAG+TGG | + | chr7.4:6876493-6876512 | MS.gene24648:CDS | 45.0% | |
| GTAGAAACCGAGATGCAAAC+GGG | - | chr7.4:6876996-6877015 | None:intergenic | 45.0% | |
| GTGGCAAGAACTTGAGTTAC+AGG | + | chr7.4:6876086-6876105 | MS.gene24648:CDS | 45.0% | |
| GTTCCACAGGCTTTCTTGAA+CGG | - | chr7.4:6876584-6876603 | None:intergenic | 45.0% | |
| GTTTCTCTGACTCATGCTGT+TGG | - | chr7.4:6875743-6875762 | None:intergenic | 45.0% | |
| TAGTGTTGCAAAGTGGGTAC+TGG | + | chr7.4:6876433-6876452 | MS.gene24648:intron | 45.0% | |
| TGTGAAAGACACATGCATCG+TGG | + | chr7.4:6876552-6876571 | MS.gene24648:CDS | 45.0% | |
| TGTGTCAAGTCACTTAGCTG+AGG | + | chr7.4:6877807-6877826 | MS.gene24648:intron | 45.0% | |
| TTTAGACCCGTTGACCAAAC+CGG | + | chr7.4:6876966-6876985 | MS.gene24648:intron | 45.0% | |
| ! | AAGGAAGTGCAGGTGATTGT+TGG | - | chr7.4:6875815-6875834 | None:intergenic | 45.0% |
| ! | CTCGGTTTCTACGGATTGTT+CGG | + | chr7.4:6877004-6877023 | MS.gene24648:intron | 45.0% |
| ! | GGTACAAACAAAGGAAGTGC+AGG | - | chr7.4:6875825-6875844 | None:intergenic | 45.0% |
| ! | TCTACGGATTGTTCGGTTTC+CGG | + | chr7.4:6877011-6877030 | MS.gene24648:intron | 45.0% |
| ! | TGAGCAGGGTGAAGAAGTTT+TGG | - | chr7.4:6875783-6875802 | None:intergenic | 45.0% |
| !! | CAAGTTGGTGACTTTGGTGT+TGG | - | chr7.4:6875853-6875872 | None:intergenic | 45.0% |
| ACACCAACTAGTAATGGCGG+TGG | + | chr7.4:6876609-6876628 | MS.gene24648:CDS | 50.0% | |
| ACTTAGCTGAGGTGGCATCA+GGG | + | chr7.4:6877818-6877837 | MS.gene24648:intron | 50.0% | |
| ATTGGCCATGCTCCCTCATT+GGG | - | chr7.4:6877438-6877457 | None:intergenic | 50.0% | |
| CCCACACCAACTAGTAATGG+CGG | + | chr7.4:6876606-6876625 | MS.gene24648:CDS | 50.0% | |
| CGGGTAAAAACGGACGGATA+CGG | - | chr7.4:6876923-6876942 | None:intergenic | 50.0% | |
| GAAGTGCAGGTGATTGTTGG+TGG | - | chr7.4:6875812-6875831 | None:intergenic | 50.0% | |
| GATCCACCGCCATTACTAGT+TGG | - | chr7.4:6876615-6876634 | None:intergenic | 50.0% | |
| GGGTAAAAACGGACGGATAC+GGG | - | chr7.4:6876922-6876941 | None:intergenic | 50.0% | |
| GTCAAGTCACTTAGCTGAGG+TGG | + | chr7.4:6877810-6877829 | MS.gene24648:intron | 50.0% | |
| TAAAAAGTGGCGGTGTGCGA+GGG | + | chr7.4:6876506-6876525 | MS.gene24648:CDS | 50.0% | |
| TATTGGCCATGCTCCCTCAT+TGG | - | chr7.4:6877439-6877458 | None:intergenic | 50.0% | |
| TCTGGCAAATGATGTCCCAC+TGG | - | chr7.4:6877261-6877280 | None:intergenic | 50.0% | |
| ! | ACCGCCATTACTAGTTGGTG+TGG | - | chr7.4:6876610-6876629 | None:intergenic | 50.0% |
| ! | CCGCCATTACTAGTTGGTGT+GGG | - | chr7.4:6876609-6876628 | None:intergenic | 50.0% |
| ! | CTACGGATTGTTCGGTTTCC+GGG | + | chr7.4:6877012-6877031 | MS.gene24648:intron | 50.0% |
| ! | GTGTTGCAAAGTGGGTACTG+GGG | + | chr7.4:6876435-6876454 | MS.gene24648:intron | 50.0% |
| !! | CTAGTAGCTTTGGGTACCGA+CGG | + | chr7.4:6876875-6876894 | MS.gene24648:intron | 50.0% |
| !! | GTGACTTTGGTGTTGGGTTG+AGG | - | chr7.4:6875846-6875865 | None:intergenic | 50.0% |
| !! | GTTGGTGGTGTTGATGAGCA+GGG | - | chr7.4:6875797-6875816 | None:intergenic | 50.0% |
| !! | TGTTGGTGGTGTTGATGAGC+AGG | - | chr7.4:6875798-6875817 | None:intergenic | 50.0% |
| AAACCGAGATGCAAACGGGC+GGG | - | chr7.4:6876992-6877011 | None:intergenic | 55.0% | |
| CACTTAGCTGAGGTGGCATC+AGG | + | chr7.4:6877817-6877836 | MS.gene24648:intron | 55.0% | |
| CTTAGCTGAGGTGGCATCAG+GGG | + | chr7.4:6877819-6877838 | MS.gene24648:intron | 55.0% | |
| GAAACCGAGATGCAAACGGG+CGG | - | chr7.4:6876993-6877012 | None:intergenic | 55.0% | |
| GAGATACGGACCCCCAATGA+GGG | + | chr7.4:6877423-6877442 | MS.gene24648:intron | 55.0% | |
| GTAAAAAGTGGCGGTGTGCG+AGG | + | chr7.4:6876505-6876524 | MS.gene24648:CDS | 55.0% | |
| GTACTGGGGAAGAGGAGCAA+TGG | + | chr7.4:6876449-6876468 | MS.gene24648:CDS | 55.0% | |
| GTTGGTGTGGGAAGTTCCAC+AGG | - | chr7.4:6876597-6876616 | None:intergenic | 55.0% | |
| TGAGATACGGACCCCCAATG+AGG | + | chr7.4:6877422-6877441 | MS.gene24648:intron | 55.0% | |
| TGGGGGTCCGTATCTCAGTT+TGG | - | chr7.4:6877419-6877438 | None:intergenic | 55.0% | |
| TTGGCCATGCTCCCTCATTG+GGG | - | chr7.4:6877437-6877456 | None:intergenic | 55.0% | |
| !! | CAAAGTGGGTACTGGGGAAG+AGG | + | chr7.4:6876441-6876460 | MS.gene24648:CDS | 55.0% |
| AACGGACGGATACGGGTGCA+AGG | - | chr7.4:6876915-6876934 | None:intergenic | 60.0% | |
| ACAAGATTTCCCGACCCGCC+CGG | - | chr7.4:6877033-6877052 | None:intergenic | 60.0% | |
| ATCCAGAGCCAGGTCGTTGC+CGG | + | chr7.4:6876472-6876491 | MS.gene24648:CDS | 60.0% | |
| CGGATTGTTCGGTTTCCGGG+CGG | + | chr7.4:6877015-6877034 | MS.gene24648:intron | 60.0% | |
| GGAGCAATGGATCCAGAGCC+AGG | + | chr7.4:6876462-6876481 | MS.gene24648:CDS | 60.0% | |
| GGATTGTTCGGTTTCCGGGC+GGG | + | chr7.4:6877016-6877035 | MS.gene24648:intron | 60.0% | |
| GGTCGTTGCCGGAGAACAGA+CGG | + | chr7.4:6876483-6876502 | MS.gene24648:CDS | 60.0% | |
| TCTGTTCTCCGGCAACGACC+TGG | - | chr7.4:6876483-6876502 | None:intergenic | 60.0% | |
| TGGCCATGCTCCCTCATTGG+GGG | - | chr7.4:6877436-6877455 | None:intergenic | 60.0% | |
| AGCTGAGGTGGCATCAGGGG+CGG | + | chr7.4:6877822-6877841 | MS.gene24648:intron | 65.0% | |
| GGACCCCCAATGAGGGAGCA+TGG | + | chr7.4:6877430-6877449 | MS.gene24648:intron | 65.0% | |
| TGTGCGAGGGATGTGGTGGC+TGG | + | chr7.4:6876519-6876538 | MS.gene24648:CDS | 65.0% | |
| TGTTCGGTTTCCGGGCGGGT+CGG | + | chr7.4:6877020-6877039 | MS.gene24648:intron | 65.0% | |
| CGAGATGCAAACGGGCGGGC+CGG | - | chr7.4:6876988-6877007 | None:intergenic | 70.0% | |
| CGGCCCGCCCGTTTGCATCT+CGG | + | chr7.4:6876986-6877005 | MS.gene24648:intron | 70.0% | |
| CTCCGGCAACGACCTGGCTC+TGG | - | chr7.4:6876477-6876496 | None:intergenic | 70.0% | |
| GCGGTGTGCGAGGGATGTGG+TGG | + | chr7.4:6876515-6876534 | MS.gene24648:CDS | 70.0% | |
| GTGGCGGTGTGCGAGGGATG+TGG | + | chr7.4:6876512-6876531 | MS.gene24648:CDS | 70.0% | |
| GTTCGGTTTCCGGGCGGGTC+GGG | + | chr7.4:6877021-6877040 | MS.gene24648:intron | 70.0% | |
| TGCAAACGGGCGGGCCGGTT+TGG | - | chr7.4:6876983-6877002 | None:intergenic | 70.0% | |
| !! | GGCGGGCCGGTTTGGTCAAC+GGG | - | chr7.4:6876975-6876994 | None:intergenic | 70.0% |
| !! | GGGCGGGCCGGTTTGGTCAA+CGG | - | chr7.4:6876976-6876995 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 6875711 | 6877914 | 6875711 | ID=MS.gene24648 |
| chr7.4 | mRNA | 6875711 | 6877914 | 6875711 | ID=MS.gene24648.t1;Parent=MS.gene24648 |
| chr7.4 | exon | 6875711 | 6875909 | 6875711 | ID=MS.gene24648.t1.exon1;Parent=MS.gene24648.t1 |
| chr7.4 | CDS | 6875711 | 6875909 | 6875711 | ID=cds.MS.gene24648.t1;Parent=MS.gene24648.t1 |
| chr7.4 | exon | 6876052 | 6876228 | 6876052 | ID=MS.gene24648.t1.exon2;Parent=MS.gene24648.t1 |
| chr7.4 | CDS | 6876052 | 6876228 | 6876052 | ID=cds.MS.gene24648.t1;Parent=MS.gene24648.t1 |
| chr7.4 | exon | 6876436 | 6876727 | 6876436 | ID=MS.gene24648.t1.exon3;Parent=MS.gene24648.t1 |
| chr7.4 | CDS | 6876436 | 6876727 | 6876436 | ID=cds.MS.gene24648.t1;Parent=MS.gene24648.t1 |
| chr7.4 | exon | 6877829 | 6877914 | 6877829 | ID=MS.gene24648.t1.exon4;Parent=MS.gene24648.t1 |
| chr7.4 | CDS | 6877829 | 6877914 | 6877829 | ID=cds.MS.gene24648.t1;Parent=MS.gene24648.t1 |
| Gene Sequence |
| Protein sequence |
