AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051499

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051499.t1 MTR_1g495705 99.330 448 3 0 1 448 1 448 0.0 917
MS.gene051499.t1 MTR_1g095650 99.330 448 3 0 1 448 1 448 0.0 917
MS.gene051499.t1 MTR_1g095703 99.107 448 4 0 1 448 1 448 0.0 916
MS.gene051499.t1 MTR_1g013680 96.452 451 13 1 1 448 1 451 0.0 888
MS.gene051499.t1 MTR_6g021800 97.477 436 11 0 1 436 1 436 0.0 887
MS.gene051499.t1 MTR_6g021805 97.477 436 11 0 1 436 1 436 0.0 887
MS.gene051499.t1 MTR_4g014810 95.982 448 17 1 1 448 1 447 0.0 886
MS.gene051499.t1 MTR_1g085410 82.949 434 74 0 1 434 1 434 0.0 746
MS.gene051499.t1 MTR_1g101870 82.151 437 73 3 1 437 1 432 0.0 736
MS.gene051499.t1 MTR_1g101870 82.151 437 73 3 1 437 1 432 0.0 734
MS.gene051499.t1 MTR_1g024175 79.493 434 89 0 1 434 1 434 0.0 729
MS.gene051499.t1 MTR_8g014590 80.178 449 87 1 1 447 1 449 0.0 725
MS.gene051499.t1 MTR_1g095650 99.135 347 3 0 102 448 1 347 0.0 708
MS.gene051499.t1 MTR_2g082730 72.874 435 101 2 1 433 1 420 0.0 646
MS.gene051499.t1 MTR_5g037350 68.085 470 113 1 3 435 13 482 0.0 637
MS.gene051499.t1 MTR_1g089520 71.628 430 104 3 4 432 5 417 0.0 629
MS.gene051499.t1 MTR_2g082665 67.816 435 97 2 1 433 1 394 0.0 589
MS.gene051499.t1 MTR_2g037420 66.051 433 104 3 1 431 1 392 0.0 564
MS.gene051499.t1 MTR_2g080210 64.828 435 117 4 1 432 1 402 0.0 552
MS.gene051499.t1 MTR_8g013910 63.920 449 127 5 1 433 1 430 0.0 552
MS.gene051499.t1 MTR_8g008740 78.769 325 68 1 1 324 1 325 0.0 540
MS.gene051499.t1 MTR_1g112460 66.443 298 59 4 155 447 1 262 2.93e-127 370
MS.gene051499.t1 MTR_1g495735 76.617 201 37 1 240 430 106 306 1.40e-101 305
MS.gene051499.t1 MTR_1g495735 71.698 53 15 0 21 73 2 54 5.01e-17 82.0
MS.gene051499.t1 MTR_6g080420 37.731 432 255 6 5 428 89 514 2.36e-96 299
MS.gene051499.t1 MTR_8g106700 37.731 432 259 6 4 429 43 470 4.63e-93 289
MS.gene051499.t1 MTR_8g106700 37.731 432 259 6 4 429 49 476 5.04e-93 289
MS.gene051499.t1 MTR_8g106700 37.731 432 259 6 4 429 70 497 1.17e-92 289
MS.gene051499.t1 MTR_8g087950 35.797 433 269 6 7 433 275 704 4.60e-91 291
MS.gene051499.t1 MTR_8g087950 35.797 433 269 6 7 433 348 777 2.59e-90 290
MS.gene051499.t1 MTR_1g101880 87.013 154 20 0 1 154 1 154 7.77e-90 274
MS.gene051499.t1 MTR_4g054970 57.025 242 75 4 193 431 50 265 2.73e-81 252
MS.gene051499.t1 MTR_4g054970 75.000 44 11 0 1 44 1 44 7.52e-13 68.9
MS.gene051499.t1 MTR_1g024165 81.429 140 26 0 6 145 10 149 1.33e-78 241
MS.gene051499.t1 MTR_8g014950 76.471 102 24 0 3 104 4 105 1.79e-47 159
MS.gene051499.t1 MTR_7g094460 30.594 438 244 14 3 429 59 447 1.15e-45 164
MS.gene051499.t1 MTR_7g098190 53.892 167 51 5 56 220 10 152 5.65e-43 149
MS.gene051499.t1 MTR_2g021300 29.841 439 246 12 3 429 46 434 1.38e-42 156
MS.gene051499.t1 MTR_3g076660 30.180 444 249 15 3 429 88 487 6.75e-41 152
MS.gene051499.t1 MTR_8g014960 64.634 82 29 0 213 294 2 83 2.33e-28 110
MS.gene051499.t1 MTR_3g097250 26.838 272 142 10 9 272 85 307 4.32e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051499.t1 AT5G60390 94.855 447 22 1 1 447 1 446 0.0 880
MS.gene051499.t1 AT5G60390 94.855 447 22 1 1 447 1 446 0.0 880
MS.gene051499.t1 AT5G60390 94.855 447 22 1 1 447 1 446 0.0 880
MS.gene051499.t1 AT1G07920 94.855 447 22 1 1 447 1 446 0.0 880
MS.gene051499.t1 AT1G07940 94.855 447 22 1 1 447 1 446 0.0 880
MS.gene051499.t1 AT1G07940 94.855 447 22 1 1 447 1 446 0.0 880
MS.gene051499.t1 AT1G07940 94.855 447 22 1 1 447 1 446 0.0 880
MS.gene051499.t1 AT1G07940 94.855 447 22 1 1 447 1 446 0.0 880
MS.gene051499.t1 AT1G07930 94.855 447 22 1 1 447 1 446 0.0 880
MS.gene051499.t1 AT1G07930 98.431 255 4 0 1 255 1 255 0.0 528
MS.gene051499.t1 AT1G07930 86.325 117 15 1 331 447 254 369 4.46e-64 211
MS.gene051499.t1 AT1G18070 37.412 425 258 5 5 424 99 520 2.10e-93 292
MS.gene051499.t1 AT1G18070 37.412 425 258 5 5 424 99 520 2.10e-93 292
MS.gene051499.t1 AT1G18070 36.697 436 257 6 5 424 99 531 1.71e-90 285
MS.gene051499.t1 AT5G10630 35.529 425 266 5 7 426 239 660 4.15e-90 287
MS.gene051499.t1 AT5G10630 35.529 425 266 5 7 426 240 661 4.25e-90 287
MS.gene051499.t1 AT5G10630 35.529 425 266 5 7 426 240 661 4.25e-90 287
MS.gene051499.t1 AT5G10630 35.529 425 266 5 7 426 310 731 2.59e-89 287
MS.gene051499.t1 AT5G10630 35.529 425 266 5 7 426 315 736 3.26e-89 287
MS.gene051499.t1 AT1G35550 78.641 103 22 0 335 437 1 103 1.45e-53 174
MS.gene051499.t1 AT4G02930 30.524 439 244 15 3 429 63 452 6.22e-44 160
MS.gene051499.t1 AT4G20360 30.365 438 256 10 3 429 75 474 7.98e-44 160
MS.gene051499.t1 AT4G20360 30.365 438 256 10 3 429 75 474 7.98e-44 160
MS.gene051499.t1 AT2G31060 24.621 264 161 8 9 263 61 295 1.09e-11 67.4
MS.gene051499.t1 AT5G08650 26.667 270 145 10 9 272 88 310 1.47e-11 67.0
MS.gene051499.t1 AT5G08650 26.667 270 145 10 9 272 88 310 1.64e-11 67.0

Find 139 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCACCATTCTTTAAGAATT+TGG 0.047525 1.3:-7862909 None:intergenic
CACTTGGCCGTTTCGCTGTC+AGG 0.261906 1.3:+7862996 MS.gene051499:CDS
GTCTACAAGATTGGAGGAAT+TGG 0.281818 1.3:+7862494 MS.gene051499:CDS
GCTCTCCTTGCTTTCACTCT+TGG 0.289982 1.3:+7862088 MS.gene051499:CDS
TCACCATTCTTTAAGAATTT+GGG 0.291423 1.3:-7862908 None:intergenic
TTCATTAAGAACATGATTAC+TGG 0.308905 1.3:+7861971 MS.gene051499:CDS
TGTTAAGAACGTTGCTGTTA+AGG 0.312399 1.3:+7862670 MS.gene051499:CDS
GCCTCTTAGGCTCGTTGATT+TGG 0.321386 1.3:-7862436 None:intergenic
CACATTAACATTGTTGTCAT+TGG 0.329838 1.3:+7861698 MS.gene051499:CDS
ATAGCCAACCTTCTTCAAAT+AGG 0.332380 1.3:-7862300 None:intergenic
ACTAAGATTGACAGGCGTTC+TGG 0.356033 1.3:+7862866 MS.gene051499:CDS
GAGGTGTGGCAGTCAAGAAC+AGG 0.357372 1.3:-7862812 None:intergenic
GCTCTCACTGAGGCTCTTCC+CGG 0.361996 1.3:+7862629 MS.gene051499:CDS
ATTCCATTTGTTCCCATCTC+TGG 0.368209 1.3:+7862335 MS.gene051499:CDS
GTCATTGGCCATGTCGACTC+TGG 0.395247 1.3:+7861713 MS.gene051499:CDS
ATACCTACCCTTCGAGTACT+TGG 0.398645 1.3:-7862252 None:intergenic
CTGATCATTGATTCCACTAC+TGG 0.405045 1.3:+7862019 MS.gene051499:CDS
GCAAAAGTGACAACCATTCC+AGG 0.418006 1.3:-7862557 None:intergenic
GGCTTGTCGGAGGGCCTCTT+AGG 0.420350 1.3:-7862449 None:intergenic
CTCCTTGGCAGGGTCATCCT+TGG 0.424157 1.3:-7862723 None:intergenic
ATGAATCACCCGGGCCAGAT+TGG 0.424580 1.3:+7862776 MS.gene051499:CDS
AAGTTAGCAGCCTCCTTGGC+AGG 0.429289 1.3:-7862734 None:intergenic
CTTAATGAAATCCCTGTGTC+CGG 0.429384 1.3:-7861957 None:intergenic
CCTGTGGGGCGTGTCGAGAC+TGG 0.431830 1.3:+7862524 MS.gene051499:CDS
GCCCCTCCGACTACCACTTC+AGG 0.433104 1.3:+7862469 MS.gene051499:CDS
TGGTAGTCGGAGGGGCTTGT+CGG 0.436561 1.3:-7862462 None:intergenic
AGGACAAATGGGTAAGGAAA+AGG 0.440646 1.3:+7861673 None:intergenic
CACCCGGGCCAGATTGGAAA+TGG 0.442837 1.3:+7862782 MS.gene051499:CDS
GGGCATAGCCATTTCCAATC+TGG 0.448022 1.3:-7862790 None:intergenic
AAACCAGAGATGGGAACAAA+TGG 0.449170 1.3:-7862338 None:intergenic
CTGACCATCCTTTGAAATAC+CGG 0.450328 1.3:-7862053 None:intergenic
ACTTCAGTTGTCAGTCCAGT+AGG 0.456008 1.3:-7862581 None:intergenic
CTTCAGGATGTCTACAAGAT+TGG 0.458119 1.3:+7862485 MS.gene051499:CDS
TGTCTCAACCACCATGGGCT+TGG 0.458699 1.3:-7862957 None:intergenic
CTCAACCACCATGGGCTTGG+TGG 0.460219 1.3:-7862954 None:intergenic
AGCGTTCATTCAAGTATGCT+TGG 0.461530 1.3:+7861831 MS.gene051499:CDS
AGGAATTGGGACTGTGCCTG+TGG 0.463901 1.3:+7862508 MS.gene051499:CDS
TCTACAAGATTGGAGGAATT+GGG 0.467601 1.3:+7862495 MS.gene051499:CDS
ACCAAATCAACGAGCCTAAG+AGG 0.467614 1.3:+7862435 MS.gene051499:CDS
TTAATGAAATCCCTGTGTCC+GGG 0.473933 1.3:-7861956 None:intergenic
TAGTCGGAGGGGCTTGTCGG+AGG 0.477669 1.3:-7862459 None:intergenic
TAGCCATTTCCAATCTGGCC+CGG 0.483094 1.3:-7862785 None:intergenic
GCGTTCATTCAAGTATGCTT+GGG 0.487854 1.3:+7861832 MS.gene051499:CDS
TCATCCTATTTGAAGAAGGT+TGG 0.491235 1.3:+7862296 MS.gene051499:CDS
AGTCGGAGGGGCTTGTCGGA+GGG 0.491386 1.3:-7862458 None:intergenic
AGCAAATTTGACAGCAATGT+GGG 0.494938 1.3:-7862834 None:intergenic
TGTAAAGTTAGCAGCCTCCT+TGG 0.496399 1.3:-7862738 None:intergenic
ATCTCCCTCAAAACCAGAGA+TGG 0.496573 1.3:-7862348 None:intergenic
GAGCCCAAATTCTTAAAGAA+TGG 0.497775 1.3:+7862905 MS.gene051499:CDS
GGGAATCATCTTAATAATAC+CGG 0.498223 1.3:-7862933 None:intergenic
GGAATTGGGACTGTGCCTGT+GGG 0.501531 1.3:+7862509 MS.gene051499:CDS
AGTTTCATCCTATTTGAAGA+AGG 0.501588 1.3:+7862292 MS.gene051499:CDS
ATCATTGATTCCACTACTGG+TGG 0.502099 1.3:+7862022 MS.gene051499:CDS
TACAAATCTTGACTGGTACA+AGG 0.502738 1.3:+7862388 MS.gene051499:CDS
TTCTTAAAGAATGGTGATGC+CGG 0.502857 1.3:+7862914 MS.gene051499:CDS
AGCTTGTTACTAAGATTGAC+AGG 0.504274 1.3:+7862858 MS.gene051499:CDS
CTTCAGTTGTCAGTCCAGTA+GGG 0.506099 1.3:-7862580 None:intergenic
TCTGGGAAGTCAACCACCAC+TGG 0.517683 1.3:+7861731 MS.gene051499:CDS
ATTAAATCCCACATTGTCAC+CGG 0.519224 1.3:-7862648 None:intergenic
AGGGTCATCCTTGGAGTTTG+AGG 0.522734 1.3:-7862714 None:intergenic
CAGGATGTCTACAAGATTGG+AGG 0.523217 1.3:+7862488 MS.gene051499:CDS
TATCAAGGCTGTGGAGAAGA+AGG 0.530959 1.3:+7863048 MS.gene051499:CDS
CTCAAAGCTGAACGTGAAAG+AGG 0.531334 1.3:+7861866 MS.gene051499:CDS
TACCTACCCTTCGAGTACTT+GGG 0.536019 1.3:-7862251 None:intergenic
TCATTGGCCATGTCGACTCT+GGG 0.536467 1.3:+7861714 MS.gene051499:CDS
GAGAATGTCTCAACCACCAT+GGG 0.537232 1.3:-7862962 None:intergenic
TGTGGCTGTTGGTGTTATCA+AGG 0.541484 1.3:+7863033 MS.gene051499:CDS
TGCACTGTCATTGATGCCCC+CGG 0.544718 1.3:+7861938 MS.gene051499:CDS
CACTTGATCTACAAGCTTGG+AGG 0.545798 1.3:+7861755 MS.gene051499:CDS
TCAACCACCATGGGCTTGGT+GGG 0.547523 1.3:-7862953 None:intergenic
TCACAATTGACATTGCTTTG+TGG 0.548007 1.3:+7861891 MS.gene051499:CDS
GATTGACAGGCGTTCTGGAA+AGG 0.550491 1.3:+7862871 MS.gene051499:CDS
GGCTTCAAAACCACCAGTAG+TGG 0.551737 1.3:-7862032 None:intergenic
GGCTCTTCCCGGTGACAATG+TGG 0.552654 1.3:+7862640 MS.gene051499:CDS
GGTCACTTGATCTACAAGCT+TGG 0.555547 1.3:+7861752 MS.gene051499:CDS
CCAGTCTCGACACGCCCCAC+AGG 0.557031 1.3:-7862524 None:intergenic
TCAAGAGCCTCAAGAAGGGT+TGG 0.557590 1.3:-7862413 None:intergenic
CTTCGAGTACTTGGGTGTAG+TGG 0.558539 1.3:-7862243 None:intergenic
AAGCAAGGAGAGCATGTTCA+CGG 0.559179 1.3:-7862078 None:intergenic
AGGTGTGGCAGTCAAGAACA+GGG 0.559985 1.3:-7862811 None:intergenic
AGCCATTTCCAATCTGGCCC+GGG 0.563796 1.3:-7862784 None:intergenic
TTGACAAGCGTGTGATTGAG+AGG 0.564366 1.3:+7861780 MS.gene051499:CDS
ACTTGGCCGTTTCGCTGTCA+GGG 0.565218 1.3:+7862997 MS.gene051499:CDS
ACAAATCTTGACTGGTACAA+GGG 0.566035 1.3:+7862389 MS.gene051499:CDS
TTCTCTGAGTATCCTCCACT+TGG 0.567938 1.3:+7862980 MS.gene051499:CDS
TTTGGTCAAGAGCCTCAAGA+AGG 0.569379 1.3:-7862418 None:intergenic
TAATGAAATCCCTGTGTCCG+GGG 0.570266 1.3:-7861955 None:intergenic
AGCAAGGAGAGCATGTTCAC+GGG 0.572470 1.3:-7862077 None:intergenic
GAAGCCGGTATTTCAAAGGA+TGG 0.572749 1.3:+7862049 MS.gene051499:CDS
AGTGATCATCATGAATCACC+CGG 0.573223 1.3:+7862766 MS.gene051499:CDS
ATCCTGAAGTGGTAGTCGGA+GGG 0.576252 1.3:-7862471 None:intergenic
GAGACTGGTGTCATAAAACC+TGG 0.585699 1.3:+7862539 MS.gene051499:CDS
TAGGTATGAAGAAATTGTGA+AGG 0.588391 1.3:+7862268 MS.gene051499:CDS
GCTCTTCCCGGTGACAATGT+GGG 0.588610 1.3:+7862641 MS.gene051499:CDS
GCATATCCCTGACAGCGAAA+CGG 0.590157 1.3:-7863003 None:intergenic
TGTTGGTGTTATCAAGGCTG+TGG 0.597147 1.3:+7863039 MS.gene051499:CDS
TTGACTTCCCAGAGTCGACA+TGG 0.602118 1.3:-7861721 None:intergenic
ATGCGTCAAACTGTGGCTGT+TGG 0.604242 1.3:+7863022 MS.gene051499:CDS
TCTCCCTCAAAACCAGAGAT+GGG 0.607478 1.3:-7862347 None:intergenic
TCCTGAAGTGGTAGTCGGAG+GGG 0.608492 1.3:-7862470 None:intergenic
CACTACACCCAAGTACTCGA+AGG 0.609948 1.3:+7862244 MS.gene051499:CDS
GATGATTCCCACCAAGCCCA+TGG 0.611182 1.3:+7862946 MS.gene051499:CDS
AGCGCTCTACAAATCTTGAC+TGG 0.613001 1.3:+7862381 MS.gene051499:CDS
CAAGGGTCCAACCCTTCTTG+AGG 0.613167 1.3:+7862406 MS.gene051499:CDS
TTGGTCAAGAGCCTCAAGAA+GGG 0.614606 1.3:-7862417 None:intergenic
GAATTGGGACTGTGCCTGTG+GGG 0.615616 1.3:+7862510 MS.gene051499:CDS
CTCCAAGGATGACCCTGCCA+AGG 0.619064 1.3:+7862721 MS.gene051499:CDS
TCACACCAAGAGTGAAAGCA+AGG 0.621193 1.3:-7862093 None:intergenic
ATCTTGTAGACATCCTGAAG+TGG 0.621388 1.3:-7862482 None:intergenic
TTCAGTTGTCAGTCCAGTAG+GGG 0.622733 1.3:-7862579 None:intergenic
ACAGCGAAACGGCCAAGTGG+AGG 0.624787 1.3:-7862992 None:intergenic
TGGTGTCATAAAACCTGGAA+TGG 0.625384 1.3:+7862544 MS.gene051499:CDS
AGAGAATGTCTCAACCACCA+TGG 0.628507 1.3:-7862963 None:intergenic
AATGATTTGTTGCTGCAACA+AGG 0.628678 1.3:+7862120 MS.gene051499:CDS
TTCTGGAAAGGAGATTGAGA+AGG 0.629354 1.3:+7862883 MS.gene051499:CDS
CAAGGATGACCCTGCCAAGG+AGG 0.630150 1.3:+7862724 MS.gene051499:CDS
AGTTAGCAGCCTCCTTGGCA+GGG 0.632288 1.3:-7862733 None:intergenic
GACAACTGAAGTGAAGTCTG+TGG 0.632641 1.3:+7862592 MS.gene051499:CDS
TTATGTTGCCTCAAACTCCA+AGG 0.633897 1.3:+7862706 MS.gene051499:CDS
CATCCTGAAGTGGTAGTCGG+AGG 0.637451 1.3:-7862472 None:intergenic
AGACATCCTGAAGTGGTAGT+CGG 0.638051 1.3:-7862475 None:intergenic
CAGCAAATTTGACAGCAATG+TGG 0.639349 1.3:-7862835 None:intergenic
TGACAGCAATGTGGGAGGTG+TGG 0.647495 1.3:-7862826 None:intergenic
CTGACAGCGAAACGGCCAAG+TGG 0.653478 1.3:-7862995 None:intergenic
CACCCAAGTACTCGAAGGGT+AGG 0.658017 1.3:+7862249 MS.gene051499:CDS
AATGAAATCCCTGTGTCCGG+GGG 0.661737 1.3:-7861954 None:intergenic
GCTGTTAAGGATCTCAAGCG+TGG 0.663761 1.3:+7862683 MS.gene051499:CDS
TTAAATCCCACATTGTCACC+GGG 0.665158 1.3:-7862647 None:intergenic
ACTACACCCAAGTACTCGAA+GGG 0.665398 1.3:+7862245 MS.gene051499:CDS
CAGGGATATGCGTCAAACTG+TGG 0.672188 1.3:+7863015 MS.gene051499:CDS
GAGAAGAAGGATCCCAGCGG+AGG 0.673598 1.3:+7863061 MS.gene051499:CDS
AAATTTGACAGCAATGTGGG+AGG 0.676474 1.3:-7862831 None:intergenic
CTTGTAGATCAAGTGACCAG+TGG 0.682705 1.3:-7861747 None:intergenic
GTGATCATCATGAATCACCC+GGG 0.685129 1.3:+7862767 MS.gene051499:CDS
GTAGATCAAGTGACCAGTGG+TGG 0.699002 1.3:-7861744 None:intergenic
GGTGTGGCAGTCAAGAACAG+GGG 0.711459 1.3:-7862810 None:intergenic
GATTCCCACCAAGCCCATGG+TGG 0.723849 1.3:+7862949 MS.gene051499:CDS
GCATCATGAAGCTCTCACTG+AGG 0.742195 1.3:+7862619 MS.gene051499:CDS
GTGGAGAAGAAGGATCCCAG+CGG 0.769725 1.3:+7863058 MS.gene051499:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TTCATTAAGAACATGATTAC+TGG + chr1.3:7861971-7861990 MS.gene051499:CDS 25.0%
!! ATCACCATTCTTTAAGAATT+TGG - chr1.3:7862912-7862931 None:intergenic 25.0%
!! TCACCATTCTTTAAGAATTT+GGG - chr1.3:7862911-7862930 None:intergenic 25.0%
AGTTTCATCCTATTTGAAGA+AGG + chr1.3:7862292-7862311 MS.gene051499:CDS 30.0%
CACATTAACATTGTTGTCAT+TGG + chr1.3:7861698-7861717 MS.gene051499:CDS 30.0%
GGGAATCATCTTAATAATAC+CGG - chr1.3:7862936-7862955 None:intergenic 30.0%
TAGGTATGAAGAAATTGTGA+AGG + chr1.3:7862268-7862287 MS.gene051499:CDS 30.0%
! GAACAAATGGAATTTTGTCT+GGG - chr1.3:7862328-7862347 None:intergenic 30.0%
ACAAATCTTGACTGGTACAA+GGG + chr1.3:7862389-7862408 MS.gene051499:CDS 35.0%
AGCAAATTTGACAGCAATGT+GGG - chr1.3:7862837-7862856 None:intergenic 35.0%
ATAATCAGATGCACCTTCAA+AGG - chr1.3:7862163-7862182 None:intergenic 35.0%
ATAGCCAACCTTCTTCAAAT+AGG - chr1.3:7862303-7862322 None:intergenic 35.0%
ATTAAATCCCACATTGTCAC+CGG - chr1.3:7862651-7862670 None:intergenic 35.0%
GAGCCCAAATTCTTAAAGAA+TGG + chr1.3:7862905-7862924 MS.gene051499:CDS 35.0%
TAATCAGATGCACCTTCAAA+GGG - chr1.3:7862162-7862181 None:intergenic 35.0%
TACAAATCTTGACTGGTACA+AGG + chr1.3:7862388-7862407 MS.gene051499:CDS 35.0%
TCACAATTGACATTGCTTTG+TGG + chr1.3:7861891-7861910 MS.gene051499:CDS 35.0%
TCATCCTATTTGAAGAAGGT+TGG + chr1.3:7862296-7862315 MS.gene051499:CDS 35.0%
TCTACAAGATTGGAGGAATT+GGG + chr1.3:7862495-7862514 MS.gene051499:CDS 35.0%
! GGAACAAATGGAATTTTGTC+TGG - chr1.3:7862329-7862348 None:intergenic 35.0%
! TGTTAAGAACGTTGCTGTTA+AGG + chr1.3:7862670-7862689 MS.gene051499:CDS 35.0%
! TTCTTAAAGAATGGTGATGC+CGG + chr1.3:7862914-7862933 MS.gene051499:CDS 35.0%
!! AATGATTTGTTGCTGCAACA+AGG + chr1.3:7862120-7862139 MS.gene051499:CDS 35.0%
!! AGCTTGTTACTAAGATTGAC+AGG + chr1.3:7862858-7862877 MS.gene051499:CDS 35.0%
!!! TTTTGAAGCCGGTATTTCAA+AGG + chr1.3:7862045-7862064 MS.gene051499:CDS 35.0%
AAACCAGAGATGGGAACAAA+TGG - chr1.3:7862341-7862360 None:intergenic 40.0%
AAATTTGACAGCAATGTGGG+AGG - chr1.3:7862834-7862853 None:intergenic 40.0%
AGCGTTCATTCAAGTATGCT+TGG + chr1.3:7861831-7861850 MS.gene051499:CDS 40.0%
AGTGATCATCATGAATCACC+CGG + chr1.3:7862766-7862785 MS.gene051499:CDS 40.0%
ATCTTGTAGACATCCTGAAG+TGG - chr1.3:7862485-7862504 None:intergenic 40.0%
ATTCCATTTGTTCCCATCTC+TGG + chr1.3:7862335-7862354 MS.gene051499:CDS 40.0%
CAGCAAATTTGACAGCAATG+TGG - chr1.3:7862838-7862857 None:intergenic 40.0%
CTTAATGAAATCCCTGTGTC+CGG - chr1.3:7861960-7861979 None:intergenic 40.0%
CTTCAGGATGTCTACAAGAT+TGG + chr1.3:7862485-7862504 MS.gene051499:CDS 40.0%
GCGTTCATTCAAGTATGCTT+GGG + chr1.3:7861832-7861851 MS.gene051499:CDS 40.0%
GTCTACAAGATTGGAGGAAT+TGG + chr1.3:7862494-7862513 MS.gene051499:CDS 40.0%
TTAAATCCCACATTGTCACC+GGG - chr1.3:7862650-7862669 None:intergenic 40.0%
TTAATGAAATCCCTGTGTCC+GGG - chr1.3:7861959-7861978 None:intergenic 40.0%
TTATGTTGCCTCAAACTCCA+AGG + chr1.3:7862706-7862725 MS.gene051499:CDS 40.0%
! GTCTTGCTATCATGAACAGA+TGG + chr1.3:7862217-7862236 MS.gene051499:intron 40.0%
! TTCTGGAAAGGAGATTGAGA+AGG + chr1.3:7862883-7862902 MS.gene051499:CDS 40.0%
!! ATCATTGATTCCACTACTGG+TGG + chr1.3:7862022-7862041 MS.gene051499:CDS 40.0%
!! CTGACCATCCTTTGAAATAC+CGG - chr1.3:7862056-7862075 None:intergenic 40.0%
!! CTGATCATTGATTCCACTAC+TGG + chr1.3:7862019-7862038 MS.gene051499:CDS 40.0%
!! GTTTTATTAAGTCCTCCGCT+GGG - chr1.3:7863076-7863095 None:intergenic 40.0%
!! TGAACGTTTTAGCCCTTTGA+AGG + chr1.3:7862147-7862166 MS.gene051499:intron 40.0%
!! TGGTGTCATAAAACCTGGAA+TGG + chr1.3:7862544-7862563 MS.gene051499:CDS 40.0%
!! TGTTTTATTAAGTCCTCCGC+TGG - chr1.3:7863077-7863096 None:intergenic 40.0%
ACCAAATCAACGAGCCTAAG+AGG + chr1.3:7862435-7862454 MS.gene051499:CDS 45.0%
ACTAAGATTGACAGGCGTTC+TGG + chr1.3:7862866-7862885 MS.gene051499:CDS 45.0%
ACTACACCCAAGTACTCGAA+GGG + chr1.3:7862245-7862264 MS.gene051499:CDS 45.0%
ACTTCAGTTGTCAGTCCAGT+AGG - chr1.3:7862584-7862603 None:intergenic 45.0%
AGACATCCTGAAGTGGTAGT+CGG - chr1.3:7862478-7862497 None:intergenic 45.0%
AGAGAATGTCTCAACCACCA+TGG - chr1.3:7862966-7862985 None:intergenic 45.0%
AGCGCTCTACAAATCTTGAC+TGG + chr1.3:7862381-7862400 MS.gene051499:CDS 45.0%
ATACCTACCCTTCGAGTACT+TGG - chr1.3:7862255-7862274 None:intergenic 45.0%
ATCTCCCTCAAAACCAGAGA+TGG - chr1.3:7862351-7862370 None:intergenic 45.0%
CACTTGATCTACAAGCTTGG+AGG + chr1.3:7861755-7861774 MS.gene051499:CDS 45.0%
CAGGATGTCTACAAGATTGG+AGG + chr1.3:7862488-7862507 MS.gene051499:CDS 45.0%
CTCAAAGCTGAACGTGAAAG+AGG + chr1.3:7861866-7861885 MS.gene051499:CDS 45.0%
CTTCAGTTGTCAGTCCAGTA+GGG - chr1.3:7862583-7862602 None:intergenic 45.0%
CTTGTAGATCAAGTGACCAG+TGG - chr1.3:7861750-7861769 None:intergenic 45.0%
GAAGCCGGTATTTCAAAGGA+TGG + chr1.3:7862049-7862068 MS.gene051499:CDS 45.0%
GACAACTGAAGTGAAGTCTG+TGG + chr1.3:7862592-7862611 MS.gene051499:CDS 45.0%
GAGAATGTCTCAACCACCAT+GGG - chr1.3:7862965-7862984 None:intergenic 45.0%
GCAAAAGTGACAACCATTCC+AGG - chr1.3:7862560-7862579 None:intergenic 45.0%
GGTCACTTGATCTACAAGCT+TGG + chr1.3:7861752-7861771 MS.gene051499:CDS 45.0%
GTGATCATCATGAATCACCC+GGG + chr1.3:7862767-7862786 MS.gene051499:CDS 45.0%
TAATGAAATCCCTGTGTCCG+GGG - chr1.3:7861958-7861977 None:intergenic 45.0%
TACCTACCCTTCGAGTACTT+GGG - chr1.3:7862254-7862273 None:intergenic 45.0%
TATCAAGGCTGTGGAGAAGA+AGG + chr1.3:7863048-7863067 MS.gene051499:CDS 45.0%
TCACACCAAGAGTGAAAGCA+AGG - chr1.3:7862096-7862115 None:intergenic 45.0%
TCTCCCTCAAAACCAGAGAT+GGG - chr1.3:7862350-7862369 None:intergenic 45.0%
TGTAAAGTTAGCAGCCTCCT+TGG - chr1.3:7862741-7862760 None:intergenic 45.0%
TTCAGTTGTCAGTCCAGTAG+GGG - chr1.3:7862582-7862601 None:intergenic 45.0%
TTCTCTGAGTATCCTCCACT+TGG + chr1.3:7862980-7862999 MS.gene051499:CDS 45.0%
TTGACAAGCGTGTGATTGAG+AGG + chr1.3:7861780-7861799 MS.gene051499:CDS 45.0%
TTGGTCAAGAGCCTCAAGAA+GGG - chr1.3:7862420-7862439 None:intergenic 45.0%
TTTGGTCAAGAGCCTCAAGA+AGG - chr1.3:7862421-7862440 None:intergenic 45.0%
! AAGCAAGGAGAGCATGTTCA+CGG - chr1.3:7862081-7862100 None:intergenic 45.0%
!! GAGACTGGTGTCATAAAACC+TGG + chr1.3:7862539-7862558 MS.gene051499:CDS 45.0%
!! TGTGGCTGTTGGTGTTATCA+AGG + chr1.3:7863033-7863052 MS.gene051499:CDS 45.0%
!! TGTTGGTGTTATCAAGGCTG+TGG + chr1.3:7863039-7863058 MS.gene051499:CDS 45.0%
!!! ACTACTGGTGGTTTTGAAGC+CGG + chr1.3:7862034-7862053 MS.gene051499:CDS 45.0%
!!! GTTCCCATCTCTGGTTTTGA+GGG + chr1.3:7862344-7862363 MS.gene051499:CDS 45.0%
!!! TGTTCCCATCTCTGGTTTTG+AGG + chr1.3:7862343-7862362 MS.gene051499:CDS 45.0%
AATGAAATCCCTGTGTCCGG+GGG - chr1.3:7861957-7861976 None:intergenic 50.0%
AGGGTCATCCTTGGAGTTTG+AGG - chr1.3:7862717-7862736 None:intergenic 50.0%
AGGTGTGGCAGTCAAGAACA+GGG - chr1.3:7862814-7862833 None:intergenic 50.0%
ATCCTGAAGTGGTAGTCGGA+GGG - chr1.3:7862474-7862493 None:intergenic 50.0%
ATGCGTCAAACTGTGGCTGT+TGG + chr1.3:7863022-7863041 MS.gene051499:CDS 50.0%
CACTACACCCAAGTACTCGA+AGG + chr1.3:7862244-7862263 MS.gene051499:CDS 50.0%
CAGGGATATGCGTCAAACTG+TGG + chr1.3:7863015-7863034 MS.gene051499:CDS 50.0%
CTTCGAGTACTTGGGTGTAG+TGG - chr1.3:7862246-7862265 None:intergenic 50.0%
GCATATCCCTGACAGCGAAA+CGG - chr1.3:7863006-7863025 None:intergenic 50.0%
GCATCATGAAGCTCTCACTG+AGG + chr1.3:7862619-7862638 MS.gene051499:CDS 50.0%
GCTCTCCTTGCTTTCACTCT+TGG + chr1.3:7862088-7862107 MS.gene051499:CDS 50.0%
GCTGTTAAGGATCTCAAGCG+TGG + chr1.3:7862683-7862702 MS.gene051499:CDS 50.0%
GGCTTCAAAACCACCAGTAG+TGG - chr1.3:7862035-7862054 None:intergenic 50.0%
GGGCATAGCCATTTCCAATC+TGG - chr1.3:7862793-7862812 None:intergenic 50.0%
GTAGATCAAGTGACCAGTGG+TGG - chr1.3:7861747-7861766 None:intergenic 50.0%
TAGCCATTTCCAATCTGGCC+CGG - chr1.3:7862788-7862807 None:intergenic 50.0%
TCAAGAGCCTCAAGAAGGGT+TGG - chr1.3:7862416-7862435 None:intergenic 50.0%
TTGACTTCCCAGAGTCGACA+TGG - chr1.3:7861724-7861743 None:intergenic 50.0%
! AGCAAGGAGAGCATGTTCAC+GGG - chr1.3:7862080-7862099 None:intergenic 50.0%
! GCCTCTTAGGCTCGTTGATT+TGG - chr1.3:7862439-7862458 None:intergenic 50.0%
!! GATTGACAGGCGTTCTGGAA+AGG + chr1.3:7862871-7862890 MS.gene051499:CDS 50.0%
!! TCATTGGCCATGTCGACTCT+GGG + chr1.3:7861714-7861733 MS.gene051499:CDS 50.0%
!!! GTTGTCACTTTTGCCCCTAC+TGG + chr1.3:7862566-7862585 MS.gene051499:CDS 50.0%
AAGTTAGCAGCCTCCTTGGC+AGG - chr1.3:7862737-7862756 None:intergenic 55.0%
ACTTGGCCGTTTCGCTGTCA+GGG + chr1.3:7862997-7863016 MS.gene051499:CDS 55.0%
AGCCATTTCCAATCTGGCCC+GGG - chr1.3:7862787-7862806 None:intergenic 55.0%
AGGAATTGGGACTGTGCCTG+TGG + chr1.3:7862508-7862527 MS.gene051499:CDS 55.0%
AGTTAGCAGCCTCCTTGGCA+GGG - chr1.3:7862736-7862755 None:intergenic 55.0%
ATGAATCACCCGGGCCAGAT+TGG + chr1.3:7862776-7862795 MS.gene051499:CDS 55.0%
CAAGGGTCCAACCCTTCTTG+AGG + chr1.3:7862406-7862425 MS.gene051499:CDS 55.0%
CACCCAAGTACTCGAAGGGT+AGG + chr1.3:7862249-7862268 MS.gene051499:CDS 55.0%
CATCCTGAAGTGGTAGTCGG+AGG - chr1.3:7862475-7862494 None:intergenic 55.0%
GAATTGGGACTGTGCCTGTG+GGG + chr1.3:7862510-7862529 MS.gene051499:CDS 55.0%
GAGGTGTGGCAGTCAAGAAC+AGG - chr1.3:7862815-7862834 None:intergenic 55.0%
GATGATTCCCACCAAGCCCA+TGG + chr1.3:7862946-7862965 MS.gene051499:CDS 55.0%
GCTCTTCCCGGTGACAATGT+GGG + chr1.3:7862641-7862660 MS.gene051499:CDS 55.0%
GGAATTGGGACTGTGCCTGT+GGG + chr1.3:7862509-7862528 MS.gene051499:CDS 55.0%
GGTGTGGCAGTCAAGAACAG+GGG - chr1.3:7862813-7862832 None:intergenic 55.0%
GTGGAGAAGAAGGATCCCAG+CGG + chr1.3:7863058-7863077 MS.gene051499:CDS 55.0%
TCCTGAAGTGGTAGTCGGAG+GGG - chr1.3:7862473-7862492 None:intergenic 55.0%
TCTGGGAAGTCAACCACCAC+TGG + chr1.3:7861731-7861750 MS.gene051499:CDS 55.0%
TGACAGCAATGTGGGAGGTG+TGG - chr1.3:7862829-7862848 None:intergenic 55.0%
TGCACTGTCATTGATGCCCC+CGG + chr1.3:7861938-7861957 MS.gene051499:CDS 55.0%
TGTCTCAACCACCATGGGCT+TGG - chr1.3:7862960-7862979 None:intergenic 55.0%
! TCAACCACCATGGGCTTGGT+GGG - chr1.3:7862956-7862975 None:intergenic 55.0%
!! GTCATTGGCCATGTCGACTC+TGG + chr1.3:7861713-7861732 MS.gene051499:CDS 55.0%
ACAGCGAAACGGCCAAGTGG+AGG - chr1.3:7862995-7863014 None:intergenic 60.0%
CAAGGATGACCCTGCCAAGG+AGG + chr1.3:7862724-7862743 MS.gene051499:CDS 60.0%
CACCCGGGCCAGATTGGAAA+TGG + chr1.3:7862782-7862801 MS.gene051499:CDS 60.0%
CACTTGGCCGTTTCGCTGTC+AGG + chr1.3:7862996-7863015 MS.gene051499:CDS 60.0%
CATTGATGCCCCCGGACACA+GGG + chr1.3:7861946-7861965 MS.gene051499:CDS 60.0%
CTCAACCACCATGGGCTTGG+TGG - chr1.3:7862957-7862976 None:intergenic 60.0%
CTCCAAGGATGACCCTGCCA+AGG + chr1.3:7862721-7862740 MS.gene051499:CDS 60.0%
CTCCTTGGCAGGGTCATCCT+TGG - chr1.3:7862726-7862745 None:intergenic 60.0%
CTGACAGCGAAACGGCCAAG+TGG - chr1.3:7862998-7863017 None:intergenic 60.0%
GAGAAGAAGGATCCCAGCGG+AGG + chr1.3:7863061-7863080 MS.gene051499:CDS 60.0%
GATTCCCACCAAGCCCATGG+TGG + chr1.3:7862949-7862968 MS.gene051499:CDS 60.0%
GCTCTCACTGAGGCTCTTCC+CGG + chr1.3:7862629-7862648 MS.gene051499:CDS 60.0%
GGCTCTTCCCGGTGACAATG+TGG + chr1.3:7862640-7862659 MS.gene051499:CDS 60.0%
TCATTGATGCCCCCGGACAC+AGG + chr1.3:7861945-7861964 MS.gene051499:CDS 60.0%
TGGTAGTCGGAGGGGCTTGT+CGG - chr1.3:7862465-7862484 None:intergenic 60.0%
AGTCGGAGGGGCTTGTCGGA+GGG - chr1.3:7862461-7862480 None:intergenic 65.0%
GCCCCTCCGACTACCACTTC+AGG + chr1.3:7862469-7862488 MS.gene051499:CDS 65.0%
GGCTTGTCGGAGGGCCTCTT+AGG - chr1.3:7862452-7862471 None:intergenic 65.0%
TAGTCGGAGGGGCTTGTCGG+AGG - chr1.3:7862462-7862481 None:intergenic 65.0%
CCAGTCTCGACACGCCCCAC+AGG - chr1.3:7862527-7862546 None:intergenic 70.0%
CCTGTGGGGCGTGTCGAGAC+TGG + chr1.3:7862524-7862543 MS.gene051499:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 7861680 7863120 7861680 ID=MS.gene051499
chr1.3 mRNA 7861680 7863120 7861680 ID=MS.gene051499.t1;Parent=MS.gene051499
chr1.3 exon 7861680 7862141 7861680 ID=MS.gene051499.t1.exon1;Parent=MS.gene051499.t1
chr1.3 CDS 7861680 7862141 7861680 ID=cds.MS.gene051499.t1;Parent=MS.gene051499.t1
chr1.3 exon 7862236 7863120 7862236 ID=MS.gene051499.t1.exon2;Parent=MS.gene051499.t1
chr1.3 CDS 7862236 7863120 7862236 ID=cds.MS.gene051499.t1;Parent=MS.gene051499.t1
Gene Sequence

>MS.gene051499

ATGGGTAAGGAAAAGGTTCACATTAACATTGTTGTCATTGGCCATGTCGACTCTGGGAAGTCAACCACCACTGGTCACTTGATCTACAAGCTTGGAGGTATTGACAAGCGTGTGATTGAGAGGTTTGAGAAAGAAGCTGCTGAGATGAACAAGCGTTCATTCAAGTATGCTTGGGTGCTTGACAAGCTCAAAGCTGAACGTGAAAGAGGTATCACAATTGACATTGCTTTGTGGAAGTTTGAGACTACAAAGTACTACTGCACTGTCATTGATGCCCCCGGACACAGGGATTTCATTAAGAACATGATTACTGGAACATCTCAAGCTGATTGCGCTGTTCTGATCATTGATTCCACTACTGGTGGTTTTGAAGCCGGTATTTCAAAGGATGGTCAGACCCGTGAACATGCTCTCCTTGCTTTCACTCTTGGTGTGAAGCAAATGATTTGTTGCTGCAACAAGGTATTTGAACGTTTTAGCCCTTTGAAGGTGCATCTGATTATTTCTGTGATTACTTTATTTATACAAATTTTCATTGTCTTGCTATCATGAACAGATGGATGCCACTACACCCAAGTACTCGAAGGGTAGGTATGAAGAAATTGTGAAGGAAGTTTCATCCTATTTGAAGAAGGTTGGCTATAACCCAGACAAAATTCCATTTGTTCCCATCTCTGGTTTTGAGGGAGATAACATGATCGAGCGCTCTACAAATCTTGACTGGTACAAGGGTCCAACCCTTCTTGAGGCTCTTGACCAAATCAACGAGCCTAAGAGGCCCTCCGACAAGCCCCTCCGACTACCACTTCAGGATGTCTACAAGATTGGAGGAATTGGGACTGTGCCTGTGGGGCGTGTCGAGACTGGTGTCATAAAACCTGGAATGGTTGTCACTTTTGCCCCTACTGGACTGACAACTGAAGTGAAGTCTGTGGAGATGCATCATGAAGCTCTCACTGAGGCTCTTCCCGGTGACAATGTGGGATTTAATGTTAAGAACGTTGCTGTTAAGGATCTCAAGCGTGGTTATGTTGCCTCAAACTCCAAGGATGACCCTGCCAAGGAGGCTGCTAACTTTACATCTCAAGTGATCATCATGAATCACCCGGGCCAGATTGGAAATGGCTATGCCCCTGTTCTTGACTGCCACACCTCCCACATTGCTGTCAAATTTGCTGAGCTTGTTACTAAGATTGACAGGCGTTCTGGAAAGGAGATTGAGAAGGAGCCCAAATTCTTAAAGAATGGTGATGCCGGTATTATTAAGATGATTCCCACCAAGCCCATGGTGGTTGAGACATTCTCTGAGTATCCTCCACTTGGCCGTTTCGCTGTCAGGGATATGCGTCAAACTGTGGCTGTTGGTGTTATCAAGGCTGTGGAGAAGAAGGATCCCAGCGGAGGACTTAATAAAACAAAGTCAGCATTGAAGAAGAAGTGA
Protein sequence

>MS.gene051499.t1

MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKGRYEEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPTGLTTEVKSVEMHHEALTEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKEIEKEPKFLKNGDAGIIKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKDPSGGLNKTKSALKKK