Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene77727.t1 | XP_013455330.1 | 89.3 | 197 | 21 | 0 | 1 | 197 | 1 | 197 | 4.00E-74 | 287.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene77727.t1 | Q9SI74 | 39.1 | 169 | 98 | 2 | 31 | 196 | 142 | 308 | 2.2e-20 | 100.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene77727.t1 | I3S4R5 | 88.8 | 197 | 22 | 0 | 1 | 197 | 1 | 197 | 2.9e-74 | 287.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049257 | MS.gene77727 | 0.804204 | 2.42E-49 | -1.69E-46 |
MS.gene049373 | MS.gene77727 | 0.822507 | 2.28E-53 | -1.69E-46 |
MS.gene05081 | MS.gene77727 | 0.801442 | 8.99E-49 | -1.69E-46 |
MS.gene051499 | MS.gene77727 | 0.804332 | 2.27E-49 | -1.69E-46 |
MS.gene051525 | MS.gene77727 | 0.801756 | 7.75E-49 | -1.69E-46 |
MS.gene052501 | MS.gene77727 | 0.812172 | 4.85E-51 | -1.69E-46 |
MS.gene052503 | MS.gene77727 | 0.800599 | 1.34E-48 | -1.69E-46 |
MS.gene052589 | MS.gene77727 | 0.826932 | 2.07E-54 | -1.69E-46 |
MS.gene052825 | MS.gene77727 | 0.806389 | 8.42E-50 | -1.69E-46 |
MS.gene053330 | MS.gene77727 | 0.834403 | 3.06E-56 | -1.69E-46 |
MS.gene054343 | MS.gene77727 | 0.805283 | 1.44E-49 | -1.69E-46 |
MS.gene055370 | MS.gene77727 | 0.808037 | 3.77E-50 | -1.69E-46 |
MS.gene05556 | MS.gene77727 | 0.802389 | 5.74E-49 | -1.69E-46 |
MS.gene056351 | MS.gene77727 | 0.826545 | 2.56E-54 | -1.69E-46 |
MS.gene056633 | MS.gene77727 | 0.854716 | 1.02E-61 | -1.69E-46 |
MS.gene056877 | MS.gene77727 | 0.805144 | 1.54E-49 | -1.69E-46 |
MS.gene057048 | MS.gene77727 | 0.815352 | 9.66E-52 | -1.69E-46 |
MS.gene057196 | MS.gene77727 | 0.854478 | 1.20E-61 | -1.69E-46 |
MS.gene057332 | MS.gene77727 | 0.812441 | 4.23E-51 | -1.69E-46 |
MS.gene057658 | MS.gene77727 | 0.819261 | 1.27E-52 | -1.69E-46 |
MS.gene058444 | MS.gene77727 | 0.81903 | 1.44E-52 | -1.69E-46 |
MS.gene058746 | MS.gene77727 | 0.839989 | 1.14E-57 | -1.69E-46 |
MS.gene05914 | MS.gene77727 | 0.806806 | 6.88E-50 | -1.69E-46 |
MS.gene059512 | MS.gene77727 | 0.85804 | 1.08E-62 | -1.69E-46 |
MS.gene059683 | MS.gene77727 | 0.81841 | 1.99E-52 | -1.69E-46 |
MS.gene060087 | MS.gene77727 | -0.819186 | 1.33E-52 | -1.69E-46 |
MS.gene061231 | MS.gene77727 | 0.80222 | 6.22E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene84369 | MS.gene77727 | PPI |
MS.gene77727 | MS.gene84370 | PPI |
MS.gene77727 | MS.gene51614 | PPI |
MS.gene77727 | MS.gene009442 | PPI |
MS.gene77727 | MS.gene56244 | PPI |
MS.gene009443 | MS.gene77727 | PPI |
MS.gene77727 | MS.gene56243 | PPI |
MS.gene77727 | MS.gene84366 | PPI |
MS.gene77727 | MS.gene56242 | PPI |
MS.gene51615 | MS.gene77727 | PPI |
MS.gene77727 | MS.gene84367 | PPI |
MS.gene77727 | MS.gene009441 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene77727.t1 | MTR_4g035870 | 94.416 | 197 | 11 | 0 | 1 | 197 | 1 | 197 | 6.30e-138 | 383 |
MS.gene77727.t1 | MTR_4g035880 | 94.416 | 197 | 11 | 0 | 1 | 197 | 1 | 197 | 1.01e-137 | 383 |
MS.gene77727.t1 | MTR_4g035905 | 83.673 | 196 | 32 | 0 | 1 | 196 | 1 | 196 | 9.10e-119 | 335 |
MS.gene77727.t1 | MTR_3g008820 | 43.558 | 163 | 90 | 1 | 36 | 196 | 24 | 186 | 1.15e-42 | 142 |
MS.gene77727.t1 | MTR_5g012000 | 42.683 | 164 | 91 | 1 | 36 | 196 | 48 | 211 | 1.65e-42 | 142 |
MS.gene77727.t1 | MTR_3g008840 | 43.558 | 163 | 90 | 1 | 36 | 196 | 25 | 187 | 1.82e-42 | 141 |
MS.gene77727.t1 | MTR_4g101760 | 39.645 | 169 | 99 | 1 | 31 | 196 | 34 | 202 | 2.63e-40 | 136 |
MS.gene77727.t1 | MTR_4g120825 | 41.566 | 166 | 85 | 3 | 36 | 190 | 35 | 199 | 1.08e-36 | 127 |
MS.gene77727.t1 | MTR_4g120830 | 40.964 | 166 | 86 | 3 | 36 | 190 | 35 | 199 | 3.28e-36 | 125 |
MS.gene77727.t1 | MTR_8g104765 | 40.964 | 166 | 86 | 3 | 36 | 190 | 44 | 208 | 8.67e-36 | 125 |
MS.gene77727.t1 | MTR_4g035855 | 38.509 | 161 | 95 | 2 | 36 | 193 | 43 | 202 | 2.01e-31 | 113 |
MS.gene77727.t1 | MTR_2g043560 | 39.394 | 165 | 86 | 4 | 36 | 195 | 34 | 189 | 1.58e-30 | 111 |
MS.gene77727.t1 | MTR_7g108790 | 34.591 | 159 | 102 | 1 | 37 | 195 | 34 | 190 | 1.89e-29 | 108 |
MS.gene77727.t1 | MTR_3g008760 | 35.443 | 158 | 99 | 2 | 36 | 190 | 66 | 223 | 5.18e-29 | 107 |
MS.gene77727.t1 | MTR_1g088540 | 39.683 | 126 | 70 | 2 | 72 | 195 | 22 | 143 | 3.38e-27 | 101 |
MS.gene77727.t1 | MTR_4g124855 | 31.429 | 210 | 117 | 4 | 1 | 195 | 2 | 199 | 3.46e-25 | 97.4 |
MS.gene77727.t1 | MTR_4g025590 | 33.333 | 171 | 103 | 3 | 34 | 194 | 1 | 170 | 1.12e-19 | 82.4 |
MS.gene77727.t1 | MTR_1g008140 | 33.333 | 180 | 91 | 5 | 32 | 189 | 71 | 243 | 2.33e-19 | 85.5 |
MS.gene77727.t1 | MTR_4g025550 | 33.728 | 169 | 101 | 3 | 36 | 194 | 32 | 199 | 3.72e-19 | 82.0 |
MS.gene77727.t1 | MTR_4g025610 | 33.136 | 169 | 102 | 3 | 36 | 194 | 32 | 199 | 4.14e-19 | 81.6 |
MS.gene77727.t1 | MTR_3g091380 | 35.849 | 159 | 94 | 3 | 37 | 189 | 78 | 234 | 4.20e-19 | 84.7 |
MS.gene77727.t1 | MTR_4g025620 | 33.136 | 169 | 102 | 3 | 36 | 194 | 32 | 199 | 3.35e-18 | 79.3 |
MS.gene77727.t1 | MTR_8g023310 | 26.875 | 160 | 114 | 2 | 37 | 193 | 68 | 227 | 1.89e-17 | 80.1 |
MS.gene77727.t1 | MTR_7g112590 | 29.630 | 162 | 104 | 5 | 37 | 195 | 59 | 213 | 2.86e-17 | 79.3 |
MS.gene77727.t1 | MTR_1g083470 | 28.108 | 185 | 118 | 6 | 15 | 193 | 37 | 212 | 5.68e-15 | 72.8 |
MS.gene77727.t1 | MTR_1g083500 | 28.108 | 185 | 118 | 6 | 15 | 193 | 37 | 212 | 5.68e-15 | 72.8 |
MS.gene77727.t1 | MTR_7g112580 | 38.235 | 102 | 54 | 3 | 96 | 193 | 99 | 195 | 1.67e-14 | 71.6 |
MS.gene77727.t1 | MTR_0036s0140 | 29.444 | 180 | 110 | 5 | 13 | 189 | 56 | 221 | 4.47e-14 | 68.6 |
MS.gene77727.t1 | MTR_4g005170 | 25.989 | 177 | 117 | 5 | 25 | 195 | 51 | 219 | 1.33e-13 | 68.9 |
MS.gene77727.t1 | MTR_1g083510 | 27.160 | 162 | 104 | 5 | 37 | 193 | 56 | 208 | 1.35e-13 | 68.9 |
MS.gene77727.t1 | MTR_4g120290 | 31.613 | 155 | 96 | 4 | 41 | 193 | 63 | 209 | 5.89e-13 | 67.0 |
MS.gene77727.t1 | MTR_8g023150 | 31.288 | 163 | 89 | 5 | 41 | 192 | 81 | 231 | 8.53e-13 | 66.6 |
MS.gene77727.t1 | MTR_1g083490 | 26.286 | 175 | 115 | 5 | 25 | 193 | 51 | 217 | 1.83e-12 | 65.5 |
MS.gene77727.t1 | MTR_4g120280 | 30.323 | 155 | 98 | 4 | 41 | 193 | 63 | 209 | 2.16e-11 | 62.4 |
MS.gene77727.t1 | MTR_4g124550 | 32.632 | 95 | 60 | 1 | 100 | 194 | 143 | 233 | 2.91e-11 | 62.0 |
MS.gene77727.t1 | MTR_8g104580 | 28.235 | 170 | 96 | 6 | 34 | 193 | 18 | 171 | 6.87e-11 | 60.8 |
MS.gene77727.t1 | MTR_4g005180 | 25.714 | 175 | 116 | 5 | 25 | 193 | 33 | 199 | 7.35e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene77727.t1 | AT5G62360 | 56.790 | 162 | 69 | 1 | 36 | 197 | 43 | 203 | 2.08e-62 | 192 |
MS.gene77727.t1 | AT1G62760 | 46.746 | 169 | 85 | 2 | 31 | 196 | 142 | 308 | 3.35e-43 | 147 |
MS.gene77727.t1 | AT5G62350 | 45.679 | 162 | 84 | 1 | 36 | 193 | 38 | 199 | 1.15e-41 | 139 |
MS.gene77727.t1 | AT1G62770 | 45.732 | 164 | 83 | 3 | 36 | 193 | 33 | 196 | 3.03e-40 | 136 |
MS.gene77727.t1 | AT1G14890 | 41.053 | 190 | 99 | 4 | 9 | 190 | 28 | 212 | 2.16e-38 | 132 |
MS.gene77727.t1 | AT2G01610 | 41.714 | 175 | 84 | 3 | 33 | 190 | 41 | 214 | 2.63e-38 | 132 |
MS.gene77727.t1 | AT3G47380 | 44.444 | 162 | 86 | 1 | 36 | 193 | 38 | 199 | 5.59e-38 | 130 |
MS.gene77727.t1 | AT4G25260 | 40.000 | 165 | 95 | 1 | 36 | 196 | 37 | 201 | 1.06e-36 | 127 |
MS.gene77727.t1 | AT5G51520 | 36.735 | 196 | 111 | 4 | 9 | 192 | 8 | 202 | 3.86e-35 | 123 |
MS.gene77727.t1 | AT5G20740 | 35.385 | 195 | 118 | 3 | 8 | 197 | 7 | 198 | 3.88e-35 | 123 |
MS.gene77727.t1 | AT5G20740 | 38.323 | 167 | 97 | 2 | 36 | 197 | 67 | 232 | 1.23e-34 | 122 |
MS.gene77727.t1 | AT4G25250 | 36.420 | 162 | 100 | 2 | 31 | 189 | 32 | 193 | 4.84e-34 | 120 |
MS.gene77727.t1 | AT1G70720 | 36.649 | 191 | 111 | 3 | 7 | 191 | 6 | 192 | 1.48e-30 | 111 |
MS.gene77727.t1 | AT1G70720 | 36.649 | 191 | 111 | 3 | 7 | 191 | 18 | 204 | 1.84e-30 | 111 |
MS.gene77727.t1 | AT1G23205 | 37.725 | 167 | 92 | 3 | 36 | 191 | 33 | 198 | 1.31e-29 | 108 |
MS.gene77727.t1 | AT4G12390 | 41.718 | 163 | 90 | 1 | 36 | 193 | 39 | 201 | 5.60e-29 | 107 |
MS.gene77727.t1 | AT2G47670 | 34.810 | 158 | 102 | 1 | 36 | 193 | 48 | 204 | 7.75e-23 | 91.7 |
MS.gene77727.t1 | AT3G14310 | 30.460 | 174 | 118 | 3 | 23 | 193 | 44 | 217 | 8.73e-23 | 95.5 |
MS.gene77727.t1 | AT3G62820 | 34.161 | 161 | 100 | 4 | 36 | 193 | 33 | 190 | 2.23e-22 | 89.7 |
MS.gene77727.t1 | AT1G53830 | 29.560 | 159 | 110 | 2 | 37 | 193 | 62 | 220 | 3.07e-21 | 90.9 |
MS.gene77727.t1 | AT5G53370 | 34.416 | 154 | 96 | 3 | 37 | 189 | 111 | 260 | 3.75e-20 | 87.8 |
MS.gene77727.t1 | AT5G53370 | 34.416 | 154 | 96 | 3 | 37 | 189 | 75 | 224 | 5.66e-20 | 87.4 |
MS.gene77727.t1 | AT4G00080 | 31.098 | 164 | 101 | 5 | 36 | 189 | 35 | 196 | 1.85e-18 | 80.1 |
MS.gene77727.t1 | AT3G05610 | 29.341 | 167 | 102 | 6 | 37 | 197 | 58 | 214 | 2.54e-15 | 73.9 |
MS.gene77727.t1 | AT5G27870 | 26.994 | 163 | 111 | 4 | 37 | 197 | 57 | 213 | 7.76e-15 | 72.4 |
MS.gene77727.t1 | AT3G14300 | 27.014 | 211 | 136 | 5 | 3 | 196 | 229 | 438 | 2.98e-14 | 70.9 |
MS.gene77727.t1 | AT3G49220 | 33.121 | 157 | 91 | 5 | 37 | 189 | 132 | 278 | 3.73e-14 | 70.5 |
MS.gene77727.t1 | AT3G49220 | 33.121 | 157 | 91 | 5 | 37 | 189 | 87 | 233 | 4.84e-14 | 70.1 |
MS.gene77727.t1 | AT3G49220 | 33.121 | 157 | 91 | 5 | 37 | 189 | 132 | 278 | 5.32e-14 | 70.1 |
MS.gene77727.t1 | AT3G47670 | 31.088 | 193 | 114 | 9 | 6 | 192 | 89 | 268 | 1.51e-12 | 65.1 |
MS.gene77727.t1 | AT2G26450 | 28.302 | 159 | 105 | 3 | 37 | 193 | 109 | 260 | 2.76e-12 | 65.1 |
MS.gene77727.t1 | AT5G49180 | 26.875 | 160 | 109 | 4 | 41 | 197 | 59 | 213 | 3.77e-12 | 64.7 |
MS.gene77727.t1 | AT5G51490 | 27.545 | 167 | 104 | 5 | 38 | 195 | 32 | 190 | 1.52e-11 | 62.8 |
MS.gene77727.t1 | AT1G53840 | 28.659 | 164 | 100 | 5 | 41 | 192 | 77 | 235 | 2.95e-11 | 62.0 |
Find 40 sgRNAs with CRISPR-Local
Find 43 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCGATTTGTTTGTATGAAAT+TGG | 0.232980 | 4.4:-68606108 | None:intergenic |
TTCATAGCTGCAGCCTCTCT+TGG | 0.298648 | 4.4:-68606227 | None:intergenic |
TGAATAATAAGTTGGATTGT+TGG | 0.368191 | 4.4:-68606022 | None:intergenic |
ATTTCTAATGAATAATAAGT+TGG | 0.390843 | 4.4:-68606030 | None:intergenic |
AGGGATGTGTAGCATAATCT+TGG | 0.405480 | 4.4:-68606074 | None:intergenic |
GTCAACTCTCTCAAAAGGTC+AGG | 0.407740 | 4.4:+68606196 | MS.gene77727:CDS |
CAATGAGTGATGTACAAACT+TGG | 0.414535 | 4.4:+68606342 | MS.gene77727:CDS |
TCATAGCTGCAGCCTCTCTT+GGG | 0.426216 | 4.4:-68606226 | None:intergenic |
TTGGGTTAGTGCTGCTTTGA+CGG | 0.427334 | 4.4:+68606361 | MS.gene77727:CDS |
GGTATGGTCTTTCATTTGCT+TGG | 0.429513 | 4.4:-68606001 | None:intergenic |
AATAAGTTGGATTGTTGGTA+TGG | 0.440873 | 4.4:-68606017 | None:intergenic |
TAGAAGGATCCTTGAAGAAA+AGG | 0.444342 | 4.4:-68605943 | None:intergenic |
AAGAGAGGCTGCAGCTATGA+AGG | 0.471251 | 4.4:+68606229 | MS.gene77727:CDS |
TTGATGTCAACTCTCTCAAA+AGG | 0.498369 | 4.4:+68606191 | MS.gene77727:CDS |
TGAAATTGGCATGCTTCACT+AGG | 0.501560 | 4.4:-68606094 | None:intergenic |
CAAAATTTGATGTGCTAAGA+CGG | 0.506965 | 4.4:-68606313 | None:intergenic |
GGGATGTGTAGCATAATCTT+GGG | 0.510147 | 4.4:-68606073 | None:intergenic |
TCATTTCATCGATAGACCTT+CGG | 0.524168 | 4.4:-68606289 | None:intergenic |
CGATGCAAGAGTCACGTTGA+GGG | 0.540531 | 4.4:-68606150 | None:intergenic |
ATGTTAAGACAGTGGTGAGA+GGG | 0.549785 | 4.4:+68606432 | MS.gene77727:CDS |
AATGTTAAGACAGTGGTGAG+AGG | 0.559999 | 4.4:+68606431 | MS.gene77727:CDS |
ATTTCAAGAGATTAGTGCTA+CGG | 0.561546 | 4.4:+68606406 | MS.gene77727:CDS |
TCAACTCTCTCAAAAGGTCA+GGG | 0.566267 | 4.4:+68606197 | MS.gene77727:CDS |
GCATAATCTTGGGTAAGTTG+TGG | 0.573599 | 4.4:-68606063 | None:intergenic |
AATGAGTGATGTACAAACTT+GGG | 0.584779 | 4.4:+68606343 | MS.gene77727:CDS |
AATAAACTTTCCACTTCACA+AGG | 0.605086 | 4.4:+68606503 | MS.gene77727:CDS |
TGCATCGGCAAAATCAACCT+CGG | 0.611496 | 4.4:+68606166 | MS.gene77727:CDS |
ACTAATCTCTTGAAATCCGT+CGG | 0.615355 | 4.4:-68606399 | None:intergenic |
CCGATGCAAGAGTCACGTTG+AGG | 0.618537 | 4.4:-68606151 | None:intergenic |
GATCAAAACACTTGTACCGA+CGG | 0.623780 | 4.4:+68606383 | MS.gene77727:CDS |
GAAATTGGCATGCTTCACTA+GGG | 0.624258 | 4.4:-68606093 | None:intergenic |
GAGAGTTGACATCAAAGCCG+AGG | 0.641012 | 4.4:-68606183 | None:intergenic |
ATTCCGTCGATGAACTCCGA+AGG | 0.643719 | 4.4:+68606273 | MS.gene77727:CDS |
CCTCAACGTGACTCTTGCAT+CGG | 0.643902 | 4.4:+68606151 | MS.gene77727:CDS |
CAACTCTCTCAAAAGGTCAG+GGG | 0.648709 | 4.4:+68606198 | MS.gene77727:CDS |
TCAGGGGATGAACCCAAGAG+AGG | 0.650942 | 4.4:+68606214 | MS.gene77727:CDS |
AGAGTGTGTGATGAAACTAA+AGG | 0.661077 | 4.4:-68605976 | None:intergenic |
AGACCTTCGGAGTTCATCGA+CGG | 0.662948 | 4.4:-68606276 | None:intergenic |
AGCTATGAAGGATTGCGTCG+AGG | 0.696363 | 4.4:+68606241 | MS.gene77727:CDS |
TACGGAGAATGTTAAGACAG+TGG | 0.702949 | 4.4:+68606424 | MS.gene77727:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTTCTAATGAATAATAAGT+TGG | - | chr4.4:68606033-68606052 | None:intergenic | 15.0% |
! | TAAAGGCAAAAATTGTTAGA+AGG | - | chr4.4:68605962-68605981 | None:intergenic | 25.0% |
!! | TGAATAATAAGTTGGATTGT+TGG | - | chr4.4:68606025-68606044 | None:intergenic | 25.0% |
AATAAACTTTCCACTTCACA+AGG | + | chr4.4:68606503-68606522 | MS.gene77727:CDS | 30.0% | |
AATGAGTGATGTACAAACTT+GGG | + | chr4.4:68606343-68606362 | MS.gene77727:CDS | 30.0% | |
ATTTCAAGAGATTAGTGCTA+CGG | + | chr4.4:68606406-68606425 | MS.gene77727:CDS | 30.0% | |
CAAAATTTGATGTGCTAAGA+CGG | - | chr4.4:68606316-68606335 | None:intergenic | 30.0% | |
! | AATAAGTTGGATTGTTGGTA+TGG | - | chr4.4:68606020-68606039 | None:intergenic | 30.0% |
! | GCGATTTGTTTGTATGAAAT+TGG | - | chr4.4:68606111-68606130 | None:intergenic | 30.0% |
ACTAATCTCTTGAAATCCGT+CGG | - | chr4.4:68606402-68606421 | None:intergenic | 35.0% | |
AGAGTGTGTGATGAAACTAA+AGG | - | chr4.4:68605979-68605998 | None:intergenic | 35.0% | |
CAATGAGTGATGTACAAACT+TGG | + | chr4.4:68606342-68606361 | MS.gene77727:CDS | 35.0% | |
TAGAAGGATCCTTGAAGAAA+AGG | - | chr4.4:68605946-68605965 | None:intergenic | 35.0% | |
TCATTTCATCGATAGACCTT+CGG | - | chr4.4:68606292-68606311 | None:intergenic | 35.0% | |
TTGATGTCAACTCTCTCAAA+AGG | + | chr4.4:68606191-68606210 | MS.gene77727:CDS | 35.0% | |
! | ACAAATCGCATGCTTTTAAC+AGG | + | chr4.4:68606122-68606141 | MS.gene77727:CDS | 35.0% |
AATGTTAAGACAGTGGTGAG+AGG | + | chr4.4:68606431-68606450 | MS.gene77727:CDS | 40.0% | |
AGGGATGTGTAGCATAATCT+TGG | - | chr4.4:68606077-68606096 | None:intergenic | 40.0% | |
ATGTTAAGACAGTGGTGAGA+GGG | + | chr4.4:68606432-68606451 | MS.gene77727:CDS | 40.0% | |
GAAATTGGCATGCTTCACTA+GGG | - | chr4.4:68606096-68606115 | None:intergenic | 40.0% | |
GATCAAAACACTTGTACCGA+CGG | + | chr4.4:68606383-68606402 | MS.gene77727:CDS | 40.0% | |
GCATAATCTTGGGTAAGTTG+TGG | - | chr4.4:68606066-68606085 | None:intergenic | 40.0% | |
GGGATGTGTAGCATAATCTT+GGG | - | chr4.4:68606076-68606095 | None:intergenic | 40.0% | |
GGTATGGTCTTTCATTTGCT+TGG | - | chr4.4:68606004-68606023 | None:intergenic | 40.0% | |
TACGGAGAATGTTAAGACAG+TGG | + | chr4.4:68606424-68606443 | MS.gene77727:CDS | 40.0% | |
TCAACTCTCTCAAAAGGTCA+GGG | + | chr4.4:68606197-68606216 | MS.gene77727:CDS | 40.0% | |
TGAAATTGGCATGCTTCACT+AGG | - | chr4.4:68606097-68606116 | None:intergenic | 40.0% | |
! | TCGCATGCTTTTAACAGGAA+CGG | + | chr4.4:68606127-68606146 | MS.gene77727:CDS | 40.0% |
CAACTCTCTCAAAAGGTCAG+GGG | + | chr4.4:68606198-68606217 | MS.gene77727:CDS | 45.0% | |
GTCAACTCTCTCAAAAGGTC+AGG | + | chr4.4:68606196-68606215 | MS.gene77727:CDS | 45.0% | |
! | TGCATCGGCAAAATCAACCT+CGG | + | chr4.4:68606166-68606185 | MS.gene77727:CDS | 45.0% |
!! | TTGGGTTAGTGCTGCTTTGA+CGG | + | chr4.4:68606361-68606380 | MS.gene77727:CDS | 45.0% |
AAGAGAGGCTGCAGCTATGA+AGG | + | chr4.4:68606229-68606248 | MS.gene77727:CDS | 50.0% | |
AGACCTTCGGAGTTCATCGA+CGG | - | chr4.4:68606279-68606298 | None:intergenic | 50.0% | |
AGCTATGAAGGATTGCGTCG+AGG | + | chr4.4:68606241-68606260 | MS.gene77727:CDS | 50.0% | |
ATTCCGTCGATGAACTCCGA+AGG | + | chr4.4:68606273-68606292 | MS.gene77727:CDS | 50.0% | |
CCTCAACGTGACTCTTGCAT+CGG | + | chr4.4:68606151-68606170 | MS.gene77727:CDS | 50.0% | |
CGATGCAAGAGTCACGTTGA+GGG | - | chr4.4:68606153-68606172 | None:intergenic | 50.0% | |
GAGAGTTGACATCAAAGCCG+AGG | - | chr4.4:68606186-68606205 | None:intergenic | 50.0% | |
TCATAGCTGCAGCCTCTCTT+GGG | - | chr4.4:68606229-68606248 | None:intergenic | 50.0% | |
TTCATAGCTGCAGCCTCTCT+TGG | - | chr4.4:68606230-68606249 | None:intergenic | 50.0% | |
CCGATGCAAGAGTCACGTTG+AGG | - | chr4.4:68606154-68606173 | None:intergenic | 55.0% | |
TCAGGGGATGAACCCAAGAG+AGG | + | chr4.4:68606214-68606233 | MS.gene77727:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 68605936 | 68606529 | 68605936 | ID=MS.gene77727 |
chr4.4 | mRNA | 68605936 | 68606529 | 68605936 | ID=MS.gene77727.t1;Parent=MS.gene77727 |
chr4.4 | exon | 68605936 | 68606529 | 68605936 | ID=MS.gene77727.t1.exon1;Parent=MS.gene77727.t1 |
chr4.4 | CDS | 68605936 | 68606529 | 68605936 | ID=cds.MS.gene77727.t1;Parent=MS.gene77727.t1 |
Gene Sequence |
Protein sequence |