Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051536.t1 | XP_003588901.1 | 95.8 | 143 | 5 | 1 | 1 | 143 | 1 | 142 | 6.30E-69 | 270 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051536.t1 | Q69P80 | 55.3 | 150 | 59 | 3 | 1 | 143 | 1 | 149 | 2.7e-36 | 152.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051536.t1 | G7I8Y2 | 95.8 | 143 | 5 | 1 | 1 | 143 | 1 | 142 | 4.5e-69 | 270.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051536 | MS.gene058433 | 0.852078 | 5.84E-61 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051536.t1 | MTR_1g015000 | 95.804 | 143 | 5 | 1 | 1 | 143 | 1 | 142 | 6.67e-99 | 280 |
MS.gene051536.t1 | MTR_3g105330 | 59.732 | 149 | 48 | 4 | 1 | 143 | 1 | 143 | 6.85e-56 | 171 |
MS.gene051536.t1 | MTR_4g019870 | 31.034 | 145 | 71 | 4 | 2 | 138 | 13 | 136 | 5.96e-18 | 75.1 |
MS.gene051536.t1 | MTR_7g066070 | 31.618 | 136 | 66 | 3 | 2 | 131 | 22 | 136 | 1.15e-15 | 69.3 |
MS.gene051536.t1 | MTR_0027s0220 | 29.787 | 141 | 77 | 4 | 2 | 140 | 27 | 147 | 1.24e-14 | 67.0 |
MS.gene051536.t1 | MTR_4g065660 | 30.645 | 124 | 64 | 3 | 5 | 128 | 35 | 136 | 6.89e-14 | 65.1 |
MS.gene051536.t1 | MTR_4g065123 | 29.268 | 123 | 65 | 2 | 1 | 123 | 27 | 127 | 1.34e-13 | 63.9 |
MS.gene051536.t1 | MTR_4g064963 | 31.579 | 133 | 66 | 4 | 5 | 133 | 46 | 157 | 2.75e-13 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene051536.t1 | AT5G20650 | 55.102 | 147 | 61 | 3 | 1 | 143 | 1 | 146 | 1.44e-50 | 158 |
MS.gene051536.t1 | AT2G26975 | 35.433 | 127 | 60 | 2 | 1 | 126 | 24 | 129 | 6.55e-20 | 80.5 |
MS.gene051536.t1 | AT5G59040 | 34.646 | 127 | 62 | 2 | 1 | 127 | 29 | 134 | 4.46e-17 | 73.2 |
MS.gene051536.t1 | AT2G37925 | 30.469 | 128 | 71 | 2 | 1 | 128 | 29 | 138 | 2.46e-13 | 63.5 |
MS.gene051536.t1 | AT5G59030 | 27.778 | 144 | 80 | 3 | 5 | 142 | 45 | 170 | 3.44e-13 | 63.5 |
MS.gene051536.t1 | AT3G46900 | 26.761 | 142 | 78 | 4 | 7 | 142 | 35 | 156 | 7.81e-13 | 62.4 |
Find 33 sgRNAs with CRISPR-Local
Find 43 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCAACATTCTACCAATATT+TGG | 0.138215 | 1.3:-7144951 | MS.gene051536:CDS |
GAGATTCGGACTCCTCTTCT+TGG | 0.249119 | 1.3:-7144866 | MS.gene051536:CDS |
ACCAATATTTGGAAAATATT+CGG | 0.254322 | 1.3:-7144940 | MS.gene051536:CDS |
TCCTCTTCTTGGGTTGAATA+AGG | 0.262656 | 1.3:-7144855 | MS.gene051536:CDS |
TGACACTCTTATTTGATTCA+TGG | 0.286816 | 1.3:-7145027 | MS.gene051536:CDS |
CGTTTGGTTACTTCTTGTTT+AGG | 0.336421 | 1.3:-7144709 | MS.gene051536:CDS |
TGATGCACATGACACTATAT+TGG | 0.342150 | 1.3:-7145060 | MS.gene051536:CDS |
ATTCATGGAAAACCAATTCA+TGG | 0.342364 | 1.3:-7145012 | MS.gene051536:CDS |
TTGGCTATAATGTCGTTTAA+TGG | 0.343696 | 1.3:-7144764 | MS.gene051536:CDS |
TTTGGTGTGAATTCTGCTAT+TGG | 0.364233 | 1.3:-7144800 | MS.gene051536:CDS |
GATGCACATGACACTATATT+GGG | 0.370954 | 1.3:-7145059 | MS.gene051536:CDS |
ATTGTGGTTGGTTTAACGTT+TGG | 0.388729 | 1.3:-7144725 | MS.gene051536:CDS |
TAGATAACTCGTCCATGAAT+TGG | 0.393378 | 1.3:+7145000 | None:intergenic |
AGATTCGGACTCCTCTTCTT+GGG | 0.397569 | 1.3:-7144865 | MS.gene051536:CDS |
TTGGTGTGAATTCTGCTATT+GGG | 0.404245 | 1.3:-7144799 | MS.gene051536:CDS |
ATTTGGAAAATATTCGGATT+CGG | 0.414816 | 1.3:-7144934 | MS.gene051536:CDS |
AGTCGCCGGTGCCGGAGATT+CGG | 0.431491 | 1.3:-7144880 | MS.gene051536:CDS |
TATTGGGTATTTGTTGATGT+TGG | 0.437573 | 1.3:-7144783 | MS.gene051536:CDS |
GAGGAACAAGGTTGTTGAAT+CGG | 0.457237 | 1.3:-7144828 | MS.gene051536:CDS |
TACTTCTTGTTTAGGAGTCA+AGG | 0.469886 | 1.3:-7144701 | MS.gene051536:CDS |
TTGGGTTGAATAAGGTTTCG+AGG | 0.486516 | 1.3:-7144847 | MS.gene051536:CDS |
AGAAGAGGAGTCCGAATCTC+CGG | 0.488903 | 1.3:+7144869 | None:intergenic |
TAGGAGTCAAGGTGAGGAAG+AGG | 0.504862 | 1.3:-7144690 | MS.gene051536:CDS |
GAGGACGCAGTCGCCGGTGC+CGG | 0.509370 | 1.3:-7144888 | MS.gene051536:CDS |
TGAGGGGAGGACGCAGTCGC+CGG | 0.519658 | 1.3:-7144894 | MS.gene051536:CDS |
ACCTTATTCAACCCAAGAAG+AGG | 0.545808 | 1.3:+7144854 | None:intergenic |
GGAGTCCGAATCTCCGGCAC+CGG | 0.550760 | 1.3:+7144875 | None:intergenic |
TCAAGGTGAGGAAGAGGCTG+CGG | 0.577917 | 1.3:-7144684 | MS.gene051536:CDS |
GAATAAGGTTTCGAGGAACA+AGG | 0.583225 | 1.3:-7144840 | MS.gene051536:CDS |
GCTATAATGTCGTTTAATGG+TGG | 0.610087 | 1.3:-7144761 | MS.gene051536:CDS |
CTTGTTTAGGAGTCAAGGTG+AGG | 0.615505 | 1.3:-7144696 | MS.gene051536:CDS |
ATGCACATGACACTATATTG+GGG | 0.639974 | 1.3:-7145058 | MS.gene051536:CDS |
TGCACATGACACTATATTGG+GGG | 0.689179 | 1.3:-7145057 | MS.gene051536:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACCAATATTTGGAAAATATT+CGG | - | chr1.3:7144773-7144792 | MS.gene051536:CDS | 20.0% |
! | ATTTGGAAAATATTCGGATT+CGG | - | chr1.3:7144779-7144798 | MS.gene051536:CDS | 25.0% |
!! | TCCGAATATTTTCCAAATAT+TGG | + | chr1.3:7144777-7144796 | None:intergenic | 25.0% |
ATTCATGGAAAACCAATTCA+TGG | - | chr1.3:7144701-7144720 | MS.gene051536:CDS | 30.0% | |
TGCAACATTCTACCAATATT+TGG | - | chr1.3:7144762-7144781 | MS.gene051536:CDS | 30.0% | |
! | TATTGGGTATTTGTTGATGT+TGG | - | chr1.3:7144930-7144949 | MS.gene051536:CDS | 30.0% |
! | TGACACTCTTATTTGATTCA+TGG | - | chr1.3:7144686-7144705 | MS.gene051536:CDS | 30.0% |
! | TTGGCTATAATGTCGTTTAA+TGG | - | chr1.3:7144949-7144968 | MS.gene051536:CDS | 30.0% |
!!! | GTTGTTGAATCGGTTTTATT+TGG | - | chr1.3:7144895-7144914 | MS.gene051536:CDS | 30.0% |
ATGCACATGACACTATATTG+GGG | - | chr1.3:7144655-7144674 | MS.gene051536:CDS | 35.0% | |
GATGCACATGACACTATATT+GGG | - | chr1.3:7144654-7144673 | MS.gene051536:CDS | 35.0% | |
TAGATAACTCGTCCATGAAT+TGG | + | chr1.3:7144716-7144735 | None:intergenic | 35.0% | |
TGATGCACATGACACTATAT+TGG | - | chr1.3:7144653-7144672 | MS.gene051536:CDS | 35.0% | |
TTGGTGTGAATTCTGCTATT+GGG | - | chr1.3:7144914-7144933 | MS.gene051536:CDS | 35.0% | |
! | ATTCGGTTGAAGTTTTTCTC+TGG | - | chr1.3:7144796-7144815 | MS.gene051536:CDS | 35.0% |
! | CGTTTGGTTACTTCTTGTTT+AGG | - | chr1.3:7145004-7145023 | MS.gene051536:CDS | 35.0% |
! | GCTATAATGTCGTTTAATGG+TGG | - | chr1.3:7144952-7144971 | MS.gene051536:CDS | 35.0% |
! | TACTTCTTGTTTAGGAGTCA+AGG | - | chr1.3:7145012-7145031 | MS.gene051536:CDS | 35.0% |
! | TTGAAGTTTTTCTCTGGTGA+GGG | - | chr1.3:7144802-7144821 | MS.gene051536:CDS | 35.0% |
! | TTTGGTGTGAATTCTGCTAT+TGG | - | chr1.3:7144913-7144932 | MS.gene051536:CDS | 35.0% |
!! | ATTGTGGTTGGTTTAACGTT+TGG | - | chr1.3:7144988-7145007 | MS.gene051536:CDS | 35.0% |
!! | GTTTAATGGTGGTGTTTTTG+TGG | - | chr1.3:7144963-7144982 | MS.gene051536:CDS | 35.0% |
ACCTTATTCAACCCAAGAAG+AGG | + | chr1.3:7144862-7144881 | None:intergenic | 40.0% | |
GAATAAGGTTTCGAGGAACA+AGG | - | chr1.3:7144873-7144892 | MS.gene051536:CDS | 40.0% | |
GAGGAACAAGGTTGTTGAAT+CGG | - | chr1.3:7144885-7144904 | MS.gene051536:CDS | 40.0% | |
TGCACATGACACTATATTGG+GGG | - | chr1.3:7144656-7144675 | MS.gene051536:CDS | 40.0% | |
! | GTTGAAGTTTTTCTCTGGTG+AGG | - | chr1.3:7144801-7144820 | MS.gene051536:CDS | 40.0% |
! | GTTTTTGTGGCTATTGTGGT+TGG | - | chr1.3:7144976-7144995 | MS.gene051536:CDS | 40.0% |
! | TGAAGTTTTTCTCTGGTGAG+GGG | - | chr1.3:7144803-7144822 | MS.gene051536:CDS | 40.0% |
!! | TCCTCTTCTTGGGTTGAATA+AGG | - | chr1.3:7144858-7144877 | MS.gene051536:CDS | 40.0% |
!! | TGGTGTTTTTGTGGCTATTG+TGG | - | chr1.3:7144972-7144991 | MS.gene051536:CDS | 40.0% |
!! | TTGGGTTGAATAAGGTTTCG+AGG | - | chr1.3:7144866-7144885 | MS.gene051536:CDS | 40.0% |
AGATTCGGACTCCTCTTCTT+GGG | - | chr1.3:7144848-7144867 | MS.gene051536:CDS | 45.0% | |
CTTGTTTAGGAGTCAAGGTG+AGG | - | chr1.3:7145017-7145036 | MS.gene051536:CDS | 45.0% | |
AGAAGAGGAGTCCGAATCTC+CGG | + | chr1.3:7144847-7144866 | None:intergenic | 50.0% | |
GAGATTCGGACTCCTCTTCT+TGG | - | chr1.3:7144847-7144866 | MS.gene051536:CDS | 50.0% | |
TAGGAGTCAAGGTGAGGAAG+AGG | - | chr1.3:7145023-7145042 | MS.gene051536:CDS | 50.0% | |
! | AGTTTTTCTCTGGTGAGGGG+AGG | - | chr1.3:7144806-7144825 | MS.gene051536:CDS | 50.0% |
TCAAGGTGAGGAAGAGGCTG+CGG | - | chr1.3:7145029-7145048 | MS.gene051536:CDS | 55.0% | |
GGAGTCCGAATCTCCGGCAC+CGG | + | chr1.3:7144841-7144860 | None:intergenic | 65.0% | |
! | AGTCGCCGGTGCCGGAGATT+CGG | - | chr1.3:7144833-7144852 | MS.gene051536:CDS | 65.0% |
TGAGGGGAGGACGCAGTCGC+CGG | - | chr1.3:7144819-7144838 | MS.gene051536:CDS | 70.0% | |
GAGGACGCAGTCGCCGGTGC+CGG | - | chr1.3:7144825-7144844 | MS.gene051536:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 7144652 | 7145083 | 7144652 | ID=MS.gene051536 |
chr1.3 | mRNA | 7144652 | 7145083 | 7144652 | ID=MS.gene051536.t1;Parent=MS.gene051536 |
chr1.3 | exon | 7144652 | 7145083 | 7144652 | ID=MS.gene051536.t1.exon1;Parent=MS.gene051536.t1 |
chr1.3 | CDS | 7144652 | 7145083 | 7144652 | ID=cds.MS.gene051536.t1;Parent=MS.gene051536.t1 |
Gene Sequence |
Protein sequence |