Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058433.t1 | XP_003588901.1 | 95.1 | 143 | 6 | 1 | 1 | 143 | 1 | 142 | 3.10E-68 | 267.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058433.t1 | Q69P80 | 56.0 | 150 | 58 | 3 | 1 | 143 | 1 | 149 | 2.1e-36 | 153.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058433.t1 | G7I8Y2 | 95.1 | 143 | 6 | 1 | 1 | 143 | 1 | 142 | 2.2e-68 | 267.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049758 | MS.gene058433 | 0.811897 | 5.56E-51 | -1.69E-46 |
MS.gene050128 | MS.gene058433 | 0.806074 | 9.82E-50 | -1.69E-46 |
MS.gene051536 | MS.gene058433 | 0.852078 | 5.84E-61 | -1.69E-46 |
MS.gene053559 | MS.gene058433 | 0.808738 | 2.67E-50 | -1.69E-46 |
MS.gene058433 | MS.gene060495 | 0.808417 | 3.13E-50 | -1.69E-46 |
MS.gene058433 | MS.gene065137 | 0.802688 | 4.98E-49 | -1.69E-46 |
MS.gene058433 | MS.gene065138 | 0.80105 | 1.08E-48 | -1.69E-46 |
MS.gene058433 | MS.gene068045 | 0.816476 | 5.42E-52 | -1.69E-46 |
MS.gene058433 | MS.gene070491 | 0.803501 | 3.38E-49 | -1.69E-46 |
MS.gene058433 | MS.gene073926 | 0.806403 | 8.37E-50 | -1.69E-46 |
MS.gene058433 | MS.gene07407 | 0.827954 | 1.18E-54 | -1.69E-46 |
MS.gene058433 | MS.gene08691 | 0.806361 | 8.54E-50 | -1.69E-46 |
MS.gene058433 | MS.gene23318 | 0.814188 | 1.75E-51 | -1.69E-46 |
MS.gene058433 | MS.gene24158 | 0.809737 | 1.63E-50 | -1.69E-46 |
MS.gene058433 | MS.gene26990 | 0.824921 | 6.21E-54 | -1.69E-46 |
MS.gene058433 | MS.gene33061 | 0.950283 | 2.27E-108 | -1.69E-46 |
MS.gene058433 | MS.gene33248 | 0.817539 | 3.13E-52 | -1.69E-46 |
MS.gene058433 | MS.gene43782 | 0.813063 | 3.09E-51 | -1.69E-46 |
MS.gene058433 | MS.gene43954 | 0.806645 | 7.44E-50 | -1.69E-46 |
MS.gene058433 | MS.gene47146 | 0.800429 | 1.45E-48 | -1.69E-46 |
MS.gene058433 | MS.gene55505 | 0.819881 | 9.20E-53 | -1.69E-46 |
MS.gene058433 | MS.gene66532 | 0.812927 | 3.31E-51 | -1.69E-46 |
MS.gene058433 | MS.gene66884 | 0.804524 | 2.07E-49 | -1.69E-46 |
MS.gene058433 | MS.gene69027 | 0.800013 | 1.76E-48 | -1.69E-46 |
MS.gene058433 | MS.gene71024 | 0.805921 | 1.06E-49 | -1.69E-46 |
MS.gene058433 | MS.gene74922 | 0.812003 | 5.28E-51 | -1.69E-46 |
MS.gene058433 | MS.gene75128 | 0.826612 | 2.47E-54 | -1.69E-46 |
MS.gene058433 | MS.gene75614 | 0.800151 | 1.65E-48 | -1.69E-46 |
MS.gene058433 | MS.gene79479 | 0.830827 | 2.36E-55 | -1.69E-46 |
MS.gene058433 | MS.gene81322 | 0.802369 | 5.80E-49 | -1.69E-46 |
MS.gene058433 | MS.gene90199 | 0.810148 | 1.33E-50 | -1.69E-46 |
MS.gene058433 | MS.gene99877 | 0.815567 | 8.65E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058433.t1 | MTR_1g015000 | 95.105 | 143 | 6 | 1 | 1 | 143 | 1 | 142 | 3.65e-98 | 278 |
MS.gene058433.t1 | MTR_3g105330 | 59.060 | 149 | 49 | 4 | 1 | 143 | 1 | 143 | 4.50e-55 | 169 |
MS.gene058433.t1 | MTR_4g019870 | 31.034 | 145 | 71 | 4 | 2 | 138 | 13 | 136 | 3.52e-18 | 75.9 |
MS.gene058433.t1 | MTR_7g066070 | 32.283 | 127 | 65 | 2 | 2 | 128 | 22 | 127 | 1.12e-15 | 69.3 |
MS.gene058433.t1 | MTR_0027s0220 | 30.000 | 140 | 76 | 4 | 2 | 139 | 27 | 146 | 6.13e-15 | 67.8 |
MS.gene058433.t1 | MTR_4g065660 | 30.645 | 124 | 64 | 3 | 5 | 128 | 35 | 136 | 3.93e-14 | 65.5 |
MS.gene058433.t1 | MTR_4g065123 | 28.148 | 135 | 75 | 2 | 1 | 135 | 27 | 139 | 1.08e-13 | 64.3 |
MS.gene058433.t1 | MTR_4g064963 | 31.579 | 133 | 66 | 4 | 5 | 133 | 46 | 157 | 1.49e-13 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene058433.t1 | AT5G20650 | 55.102 | 147 | 61 | 3 | 1 | 143 | 1 | 146 | 1.18e-50 | 158 |
MS.gene058433.t1 | AT2G26975 | 33.577 | 137 | 64 | 3 | 1 | 131 | 24 | 139 | 3.99e-20 | 80.9 |
MS.gene058433.t1 | AT5G59040 | 34.375 | 128 | 63 | 2 | 1 | 128 | 29 | 135 | 2.94e-17 | 73.6 |
MS.gene058433.t1 | AT5G59030 | 27.778 | 144 | 80 | 3 | 5 | 142 | 45 | 170 | 1.42e-13 | 64.7 |
MS.gene058433.t1 | AT2G37925 | 30.469 | 128 | 71 | 2 | 1 | 128 | 29 | 138 | 1.45e-13 | 63.9 |
MS.gene058433.t1 | AT3G46900 | 26.761 | 142 | 78 | 4 | 7 | 142 | 35 | 156 | 4.28e-13 | 63.2 |
Find 31 sgRNAs with CRISPR-Local
Find 40 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCAACATTCTACCAATATT+TGG | 0.138215 | 1.4:-6940213 | MS.gene058433:CDS |
GAGATTCGGACTCCTCTTCT+TGG | 0.249119 | 1.4:-6940128 | MS.gene058433:CDS |
ACCAATATTTGGAAAATATT+CGG | 0.254322 | 1.4:-6940202 | MS.gene058433:CDS |
TCCTCTTCTTGGGTTGAATA+AGG | 0.262656 | 1.4:-6940117 | MS.gene058433:CDS |
TGACACTCTTATTTGATTCA+TGG | 0.286816 | 1.4:-6940289 | MS.gene058433:CDS |
TGATGCACATGACATTATAT+TGG | 0.315744 | 1.4:-6940322 | MS.gene058433:CDS |
GATGCACATGACATTATATT+GGG | 0.333053 | 1.4:-6940321 | MS.gene058433:CDS |
CGTTTGGTTACTTCTTGTTT+AGG | 0.336421 | 1.4:-6939971 | MS.gene058433:CDS |
ATTCATGGAAAACCAATTCA+TGG | 0.342364 | 1.4:-6940274 | MS.gene058433:CDS |
TTGGCTATAATGTCGTTTAA+TGG | 0.343696 | 1.4:-6940026 | MS.gene058433:CDS |
TTTGGTGTGAATTCTGCTAT+TGG | 0.364233 | 1.4:-6940062 | MS.gene058433:CDS |
ATTGTGGTTGGTTTAACGTT+TGG | 0.388729 | 1.4:-6939987 | MS.gene058433:CDS |
TAGATAACTCGTCCATGAAT+TGG | 0.393378 | 1.4:+6940262 | None:intergenic |
AGATTCGGACTCCTCTTCTT+GGG | 0.397569 | 1.4:-6940127 | MS.gene058433:CDS |
TTGGTGTGAATTCTGCTATT+GGG | 0.404245 | 1.4:-6940061 | MS.gene058433:CDS |
ATTTGGAAAATATTCGGATT+CGG | 0.414816 | 1.4:-6940196 | MS.gene058433:CDS |
AGTCGCCGGTGCCGGAGATT+CGG | 0.431491 | 1.4:-6940142 | MS.gene058433:CDS |
TATTGGGTATTTGTTGATGT+TGG | 0.437573 | 1.4:-6940045 | MS.gene058433:CDS |
GAGGAACAAGGTTGTTGAAT+CGG | 0.457237 | 1.4:-6940090 | MS.gene058433:CDS |
TTGGGTTGAATAAGGTTTCG+AGG | 0.486516 | 1.4:-6940109 | MS.gene058433:CDS |
AGAAGAGGAGTCCGAATCTC+CGG | 0.488903 | 1.4:+6940131 | None:intergenic |
GAGGACGCAGTCGCCGGTGC+CGG | 0.509370 | 1.4:-6940150 | MS.gene058433:CDS |
TGAGGGGAGGACGCAGTCGC+CGG | 0.519658 | 1.4:-6940156 | MS.gene058433:CDS |
ACCTTATTCAACCCAAGAAG+AGG | 0.545808 | 1.4:+6940116 | None:intergenic |
GGAGTCCGAATCTCCGGCAC+CGG | 0.550760 | 1.4:+6940137 | None:intergenic |
TCAGAGTGAAGAAGAGGCTG+CGG | 0.552122 | 1.4:-6939946 | MS.gene058433:CDS |
TAGGAGTCAGAGTGAAGAAG+AGG | 0.579273 | 1.4:-6939952 | MS.gene058433:CDS |
CACAAACTAAGCACATGCAC+AGG | 0.579857 | 1.4:+6939908 | None:intergenic |
GAATAAGGTTTCGAGGAACA+AGG | 0.583225 | 1.4:-6940102 | MS.gene058433:CDS |
GCTATAATGTCGTTTAATGG+TGG | 0.610087 | 1.4:-6940023 | MS.gene058433:CDS |
ATGCACATGACATTATATTG+GGG | 0.668922 | 1.4:-6940320 | MS.gene058433:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACCAATATTTGGAAAATATT+CGG | - | chr1.4:6940035-6940054 | MS.gene058433:CDS | 20.0% |
! | ATTTGGAAAATATTCGGATT+CGG | - | chr1.4:6940041-6940060 | MS.gene058433:CDS | 25.0% |
!! | TCCGAATATTTTCCAAATAT+TGG | + | chr1.4:6940039-6940058 | None:intergenic | 25.0% |
ATGCACATGACATTATATTG+GGG | - | chr1.4:6939917-6939936 | MS.gene058433:CDS | 30.0% | |
ATTCATGGAAAACCAATTCA+TGG | - | chr1.4:6939963-6939982 | MS.gene058433:CDS | 30.0% | |
GATGCACATGACATTATATT+GGG | - | chr1.4:6939916-6939935 | MS.gene058433:CDS | 30.0% | |
TGATGCACATGACATTATAT+TGG | - | chr1.4:6939915-6939934 | MS.gene058433:CDS | 30.0% | |
TGCAACATTCTACCAATATT+TGG | - | chr1.4:6940024-6940043 | MS.gene058433:CDS | 30.0% | |
! | TATTGGGTATTTGTTGATGT+TGG | - | chr1.4:6940192-6940211 | MS.gene058433:CDS | 30.0% |
! | TGACACTCTTATTTGATTCA+TGG | - | chr1.4:6939948-6939967 | MS.gene058433:CDS | 30.0% |
! | TTGGCTATAATGTCGTTTAA+TGG | - | chr1.4:6940211-6940230 | MS.gene058433:CDS | 30.0% |
!!! | GTTGTTGAATCGGTTTTATT+TGG | - | chr1.4:6940157-6940176 | MS.gene058433:CDS | 30.0% |
TAGATAACTCGTCCATGAAT+TGG | + | chr1.4:6939978-6939997 | None:intergenic | 35.0% | |
TTGGTGTGAATTCTGCTATT+GGG | - | chr1.4:6940176-6940195 | MS.gene058433:CDS | 35.0% | |
! | ATTCGGTTGAAGTTTTTCTC+TGG | - | chr1.4:6940058-6940077 | MS.gene058433:CDS | 35.0% |
! | CGTTTGGTTACTTCTTGTTT+AGG | - | chr1.4:6940266-6940285 | MS.gene058433:CDS | 35.0% |
! | GCTATAATGTCGTTTAATGG+TGG | - | chr1.4:6940214-6940233 | MS.gene058433:CDS | 35.0% |
! | TTGAAGTTTTTCTCTGGTGA+GGG | - | chr1.4:6940064-6940083 | MS.gene058433:CDS | 35.0% |
! | TTTGGTGTGAATTCTGCTAT+TGG | - | chr1.4:6940175-6940194 | MS.gene058433:CDS | 35.0% |
!! | ATTGTGGTTGGTTTAACGTT+TGG | - | chr1.4:6940250-6940269 | MS.gene058433:CDS | 35.0% |
!! | GTTTAATGGTGGTGTTTTTG+TGG | - | chr1.4:6940225-6940244 | MS.gene058433:CDS | 35.0% |
ACCTTATTCAACCCAAGAAG+AGG | + | chr1.4:6940124-6940143 | None:intergenic | 40.0% | |
GAATAAGGTTTCGAGGAACA+AGG | - | chr1.4:6940135-6940154 | MS.gene058433:CDS | 40.0% | |
GAGGAACAAGGTTGTTGAAT+CGG | - | chr1.4:6940147-6940166 | MS.gene058433:CDS | 40.0% | |
! | GTTGAAGTTTTTCTCTGGTG+AGG | - | chr1.4:6940063-6940082 | MS.gene058433:CDS | 40.0% |
! | GTTTTTGTGGCTATTGTGGT+TGG | - | chr1.4:6940238-6940257 | MS.gene058433:CDS | 40.0% |
! | TGAAGTTTTTCTCTGGTGAG+GGG | - | chr1.4:6940065-6940084 | MS.gene058433:CDS | 40.0% |
!! | TCCTCTTCTTGGGTTGAATA+AGG | - | chr1.4:6940120-6940139 | MS.gene058433:CDS | 40.0% |
!! | TGGTGTTTTTGTGGCTATTG+TGG | - | chr1.4:6940234-6940253 | MS.gene058433:CDS | 40.0% |
!! | TTGGGTTGAATAAGGTTTCG+AGG | - | chr1.4:6940128-6940147 | MS.gene058433:CDS | 40.0% |
AGATTCGGACTCCTCTTCTT+GGG | - | chr1.4:6940110-6940129 | MS.gene058433:CDS | 45.0% | |
TAGGAGTCAGAGTGAAGAAG+AGG | - | chr1.4:6940285-6940304 | MS.gene058433:CDS | 45.0% | |
AGAAGAGGAGTCCGAATCTC+CGG | + | chr1.4:6940109-6940128 | None:intergenic | 50.0% | |
GAGATTCGGACTCCTCTTCT+TGG | - | chr1.4:6940109-6940128 | MS.gene058433:CDS | 50.0% | |
TCAGAGTGAAGAAGAGGCTG+CGG | - | chr1.4:6940291-6940310 | MS.gene058433:CDS | 50.0% | |
! | AGTTTTTCTCTGGTGAGGGG+AGG | - | chr1.4:6940068-6940087 | MS.gene058433:CDS | 50.0% |
GGAGTCCGAATCTCCGGCAC+CGG | + | chr1.4:6940103-6940122 | None:intergenic | 65.0% | |
! | AGTCGCCGGTGCCGGAGATT+CGG | - | chr1.4:6940095-6940114 | MS.gene058433:CDS | 65.0% |
TGAGGGGAGGACGCAGTCGC+CGG | - | chr1.4:6940081-6940100 | MS.gene058433:CDS | 70.0% | |
GAGGACGCAGTCGCCGGTGC+CGG | - | chr1.4:6940087-6940106 | MS.gene058433:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 6939914 | 6940345 | 6939914 | ID=MS.gene058433 |
chr1.4 | mRNA | 6939914 | 6940345 | 6939914 | ID=MS.gene058433.t1;Parent=MS.gene058433 |
chr1.4 | exon | 6939914 | 6940345 | 6939914 | ID=MS.gene058433.t1.exon1;Parent=MS.gene058433.t1 |
chr1.4 | CDS | 6939914 | 6940345 | 6939914 | ID=cds.MS.gene058433.t1;Parent=MS.gene058433.t1 |
Gene Sequence |
Protein sequence |