AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05196

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05196.t1 MTR_7g005280 79.688 256 21 6 1 225 1 256 1.34e-132 373
MS.gene05196.t1 MTR_8g099750 59.659 176 60 3 1 166 1 175 1.28e-71 218
MS.gene05196.t1 MTR_3g098810 58.427 178 62 3 1 166 1 178 1.75e-68 210
MS.gene05196.t1 MTR_3g098810 60.927 151 56 2 1 148 1 151 1.54e-61 190
MS.gene05196.t1 MTR_4g089135 54.286 175 51 3 13 158 14 188 2.35e-56 182
MS.gene05196.t1 MTR_7g085220 45.495 222 92 7 11 203 5 226 1.92e-55 180
MS.gene05196.t1 MTR_5g041940 56.329 158 57 3 12 159 1 156 6.24e-55 176
MS.gene05196.t1 MTR_4g081870 53.409 176 70 4 14 179 9 182 6.32e-55 177
MS.gene05196.t1 MTR_2g080010 56.173 162 54 3 14 158 15 176 7.73e-55 179
MS.gene05196.t1 MTR_7g070140 56.886 167 28 2 59 225 12 134 2.50e-54 171
MS.gene05196.t1 MTR_7g100990 46.842 190 90 4 9 188 6 194 3.37e-53 174
MS.gene05196.t1 MTR_3g064580 56.395 172 63 6 12 173 4 173 5.48e-52 178
MS.gene05196.t1 MTR_3g088110 56.329 158 57 4 11 159 4 158 1.07e-51 169
MS.gene05196.t1 MTR_2157s0010 53.416 161 59 4 14 158 8 168 2.29e-51 167
MS.gene05196.t1 MTR_2g064090 42.437 238 109 8 12 224 4 238 5.68e-51 169
MS.gene05196.t1 MTR_3g109340 51.266 158 73 2 11 164 19 176 8.44e-51 169
MS.gene05196.t1 MTR_4g035590 48.619 181 75 5 16 181 10 187 8.83e-51 168
MS.gene05196.t1 MTR_2g093810 53.333 150 60 2 16 155 16 165 1.02e-50 167
MS.gene05196.t1 MTR_3g109340 50.943 159 73 2 11 164 19 177 1.38e-50 168
MS.gene05196.t1 MTR_4g036030 54.305 151 60 4 16 159 9 157 3.40e-50 167
MS.gene05196.t1 MTR_4g108760 49.714 175 75 5 1 164 1 173 7.14e-50 166
MS.gene05196.t1 MTR_1g069805 42.439 205 107 4 14 210 10 211 9.30e-50 164
MS.gene05196.t1 MTR_1g008740 52.500 160 70 3 11 164 10 169 1.57e-49 165
MS.gene05196.t1 MTR_1g008740 52.500 160 70 3 11 164 24 183 1.58e-49 166
MS.gene05196.t1 MTR_5g021710 49.390 164 74 4 16 172 10 171 2.09e-49 165
MS.gene05196.t1 MTR_2g078700 50.000 160 72 2 11 162 20 179 5.40e-49 164
MS.gene05196.t1 MTR_7g070150 71.930 114 10 2 102 215 1 92 7.01e-49 155
MS.gene05196.t1 MTR_5g012080 50.658 152 66 3 16 159 9 159 1.53e-48 162
MS.gene05196.t1 MTR_2g062730 49.682 157 71 3 10 159 6 161 3.01e-48 162
MS.gene05196.t1 MTR_3g435150 50.617 162 70 3 11 164 13 172 3.69e-48 160
MS.gene05196.t1 MTR_5g076850 55.414 157 56 6 12 158 4 156 6.70e-48 167
MS.gene05196.t1 MTR_6g084430 39.474 228 119 5 11 221 2 227 6.71e-48 160
MS.gene05196.t1 MTR_8g094580 53.416 161 60 5 10 159 3 159 8.31e-48 159
MS.gene05196.t1 MTR_2g079990 52.795 161 68 3 10 164 12 170 9.55e-48 160
MS.gene05196.t1 MTR_4g101680 50.000 160 71 3 16 168 9 166 1.35e-47 160
MS.gene05196.t1 MTR_6g477900 49.697 165 72 4 12 168 4 165 1.76e-47 157
MS.gene05196.t1 MTR_5g040420 40.845 213 106 3 1 199 1 207 2.95e-47 160
MS.gene05196.t1 MTR_1g096430 49.375 160 72 3 16 168 9 166 3.71e-47 159
MS.gene05196.t1 MTR_8g076110 51.656 151 64 4 16 159 8 156 4.91e-47 157
MS.gene05196.t1 MTR_6g012670 49.686 159 70 4 14 164 20 176 6.49e-47 157
MS.gene05196.t1 MTR_8g467490 44.134 179 85 2 1 164 1 179 1.70e-46 158
MS.gene05196.t1 MTR_3g096920 52.201 159 64 3 10 159 3 158 4.34e-46 154
MS.gene05196.t1 MTR_8g059170 52.469 162 67 4 11 164 11 170 7.00e-46 155
MS.gene05196.t1 MTR_3g070030 48.810 168 73 5 7 164 12 176 8.24e-46 155
MS.gene05196.t1 MTR_5g090970 50.000 164 66 5 8 156 13 175 1.05e-45 154
MS.gene05196.t1 MTR_7g097090 50.685 146 68 2 14 156 10 154 1.34e-45 153
MS.gene05196.t1 MTR_8g024480 44.318 176 78 3 2 159 3 176 2.66e-45 156
MS.gene05196.t1 MTR_5g090970 49.697 165 66 5 8 156 13 176 3.28e-45 153
MS.gene05196.t1 MTR_6g032770 47.097 155 74 2 12 158 16 170 5.03e-45 154
MS.gene05196.t1 MTR_7g011120 47.701 174 72 5 7 164 1 171 8.39e-45 152
MS.gene05196.t1 MTR_7g085260 49.123 171 74 5 1 158 1 171 9.01e-45 154
MS.gene05196.t1 MTR_5g014300 40.404 198 108 2 10 197 2 199 1.28e-44 152
MS.gene05196.t1 MTR_2g064470 46.707 167 72 5 4 160 1 160 5.34e-44 149
MS.gene05196.t1 MTR_7g011130 44.444 180 75 4 7 164 12 188 7.08e-44 150
MS.gene05196.t1 MTR_4g098630 45.349 172 85 3 14 176 6 177 1.41e-43 149
MS.gene05196.t1 MTR_2g068880 42.932 191 84 5 6 175 13 199 1.50e-43 149
MS.gene05196.t1 MTR_3g096140 46.667 165 74 5 14 168 7 167 1.77e-43 147
MS.gene05196.t1 MTR_2g079990 44.974 189 68 3 10 164 12 198 2.31e-43 150
MS.gene05196.t1 MTR_6g011860 47.500 160 68 4 14 158 15 173 5.40e-43 149
MS.gene05196.t1 MTR_2g068920 47.273 165 66 4 15 159 22 185 1.41e-42 145
MS.gene05196.t1 MTR_3g096140 46.667 165 74 5 14 168 7 167 1.42e-42 147
MS.gene05196.t1 MTR_3g116070 51.389 144 66 3 8 147 17 160 1.48e-42 147
MS.gene05196.t1 MTR_3g070040 45.238 168 77 3 7 164 1 163 9.42e-42 144
MS.gene05196.t1 MTR_3g096920 55.970 134 53 2 10 140 3 133 1.27e-41 144
MS.gene05196.t1 MTR_3g093040 45.806 155 74 3 12 158 106 258 2.09e-41 143
MS.gene05196.t1 MTR_1g097300 47.879 165 70 5 15 168 20 179 4.16e-41 147
MS.gene05196.t1 MTR_1g090720 49.704 169 67 4 14 167 42 207 5.19e-41 145
MS.gene05196.t1 MTR_0036s0150 48.125 160 73 4 16 167 7 164 8.29e-41 146
MS.gene05196.t1 MTR_1g090723 45.198 177 86 4 16 183 10 184 1.30e-40 146
MS.gene05196.t1 MTR_3g093050 42.857 182 81 5 17 190 25 191 1.59e-40 146
MS.gene05196.t1 MTR_5g069030 49.677 155 68 3 13 159 24 176 1.97e-40 146
MS.gene05196.t1 MTR_3g093050 42.857 182 81 5 17 190 25 191 2.10e-40 146
MS.gene05196.t1 MTR_1g090723 44.886 176 87 4 16 183 10 183 2.52e-40 145
MS.gene05196.t1 MTR_1g090723 44.886 176 87 4 16 183 10 183 3.13e-40 145
MS.gene05196.t1 MTR_8g063550 43.976 166 79 4 13 168 5 166 6.69e-40 140
MS.gene05196.t1 MTR_8g063550 43.976 166 79 4 13 168 5 166 2.42e-39 140
MS.gene05196.t1 MTR_8g063550 43.976 166 79 4 13 168 5 166 2.52e-39 140
MS.gene05196.t1 MTR_2g086880 46.575 146 68 3 14 155 18 157 3.15e-39 141
MS.gene05196.t1 MTR_2g086880 46.575 146 68 3 14 155 18 157 3.75e-39 142
MS.gene05196.t1 MTR_8g093580 43.976 166 79 4 13 168 5 166 6.38e-39 140
MS.gene05196.t1 MTR_4g134460 45.513 156 78 4 14 165 54 206 2.30e-37 135
MS.gene05196.t1 MTR_4g075980 43.827 162 83 4 1 158 4 161 1.52e-36 130
MS.gene05196.t1 MTR_8g023840 46.207 145 69 4 17 155 14 155 5.58e-36 131
MS.gene05196.t1 MTR_4g094302 38.323 167 84 4 14 169 11 169 3.52e-33 118
MS.gene05196.t1 MTR_3g096140 43.919 148 69 5 31 168 3 146 5.24e-32 119
MS.gene05196.t1 MTR_4g094302 43.307 127 63 2 14 138 11 130 1.80e-31 113
MS.gene05196.t1 MTR_8g023860 41.096 146 77 4 17 156 15 157 3.17e-31 118
MS.gene05196.t1 MTR_8g023930 38.503 187 95 7 14 193 23 196 3.14e-29 114
MS.gene05196.t1 MTR_8g023900 41.250 160 82 5 17 170 196 349 3.39e-29 114
MS.gene05196.t1 MTR_8g023900 39.752 161 87 5 15 168 12 169 1.24e-27 109
MS.gene05196.t1 MTR_2g086690 40.506 158 76 6 16 157 6 161 8.26e-29 108
MS.gene05196.t1 MTR_4g052620 40.385 156 78 6 16 157 7 161 7.93e-28 106
MS.gene05196.t1 MTR_8g093790 39.241 158 74 6 12 166 8 146 3.23e-27 103
MS.gene05196.t1 MTR_8g094580 52.427 103 39 3 64 159 6 105 6.07e-27 103
MS.gene05196.t1 MTR_8g023880 36.364 198 90 8 17 193 10 192 8.41e-25 99.0
MS.gene05196.t1 MTR_7g105170 34.524 168 84 7 14 160 4 166 2.47e-24 97.4
MS.gene05196.t1 MTR_5g061450 75.000 72 14 2 157 225 14 84 1.65e-21 85.1
MS.gene05196.t1 MTR_5g061420 72.222 72 16 2 157 225 14 84 1.88e-18 77.4
MS.gene05196.t1 MTR_3g096400 33.735 166 78 7 12 156 5 159 2.29e-18 80.5
MS.gene05196.t1 MTR_7g083360 34.074 135 80 6 7 136 3 133 1.80e-17 76.6
MS.gene05196.t1 MTR_1g045470 35.417 144 80 5 22 154 13 154 1.86e-17 79.7
MS.gene05196.t1 MTR_7g083370 31.690 142 88 5 7 143 3 140 2.05e-17 76.3
MS.gene05196.t1 MTR_7g083330 34.559 136 80 5 6 136 10 141 1.84e-16 75.1
MS.gene05196.t1 MTR_7g116460 32.877 146 85 5 20 154 11 154 3.93e-16 74.3
MS.gene05196.t1 MTR_4g078875 27.016 248 146 12 8 225 38 280 1.50e-12 65.9
MS.gene05196.t1 MTR_2g014680 33.333 159 73 10 7 138 41 193 1.10e-11 63.5
MS.gene05196.t1 MTR_4g088245 28.191 188 105 10 4 165 54 237 3.29e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05196.t1 AT5G13180 72.455 167 44 1 1 165 1 167 6.79e-90 265
MS.gene05196.t1 AT2G33480 60.000 205 78 3 1 203 1 203 1.43e-83 249
MS.gene05196.t1 AT2G33480 59.420 207 78 3 1 203 1 205 3.17e-83 249
MS.gene05196.t1 AT1G61110 56.287 167 54 4 10 158 12 177 7.72e-55 178
MS.gene05196.t1 AT1G77450 49.746 197 85 5 10 196 6 198 9.58e-55 176
MS.gene05196.t1 AT3G04070 55.090 167 59 4 8 158 4 170 2.02e-54 177
MS.gene05196.t1 AT1G69490 56.522 161 57 4 14 164 9 166 3.62e-54 175
MS.gene05196.t1 AT5G39610 45.238 210 100 5 12 208 18 225 5.06e-53 172
MS.gene05196.t1 AT3G15510 56.329 158 52 3 18 158 21 178 5.21e-53 174
MS.gene05196.t1 AT3G04070 50.820 183 58 4 8 158 4 186 2.54e-52 172
MS.gene05196.t1 AT1G65910 44.928 207 96 5 12 210 4 200 6.67e-52 177
MS.gene05196.t1 AT5G07680 52.469 162 67 4 11 164 14 173 1.12e-51 170
MS.gene05196.t1 AT5G61430 53.704 162 65 5 11 164 13 172 1.16e-51 170
MS.gene05196.t1 AT2G24430 52.469 162 72 2 8 164 10 171 1.83e-51 169
MS.gene05196.t1 AT2G24430 52.469 162 72 2 8 164 10 171 1.83e-51 169
MS.gene05196.t1 AT5G07680 53.459 159 64 4 14 164 3 159 1.87e-51 169
MS.gene05196.t1 AT5G17260 44.395 223 104 5 12 225 4 215 8.84e-51 171
MS.gene05196.t1 AT1G33280 52.667 150 63 2 16 159 10 157 9.15e-51 167
MS.gene05196.t1 AT3G03200 40.870 230 118 5 12 225 4 231 1.18e-50 171
MS.gene05196.t1 AT4G27410 49.412 170 78 3 11 174 11 178 2.40e-50 166
MS.gene05196.t1 AT3G18400 52.201 159 69 4 11 164 2 158 4.73e-50 166
MS.gene05196.t1 AT1G54330 56.494 154 56 3 12 158 4 153 5.84e-50 165
MS.gene05196.t1 AT4G10350 53.595 153 60 4 16 159 11 161 7.84e-50 166
MS.gene05196.t1 AT1G12260 51.923 156 66 4 16 164 9 162 8.30e-50 166
MS.gene05196.t1 AT1G12260 51.923 156 66 4 16 164 9 162 2.66e-49 166
MS.gene05196.t1 AT5G53950 53.595 153 63 3 14 158 17 169 8.42e-49 164
MS.gene05196.t1 AT1G62700 53.548 155 63 4 16 163 9 161 9.24e-49 164
MS.gene05196.t1 AT1G62700 53.548 155 63 4 16 163 9 161 9.24e-49 164
MS.gene05196.t1 AT3G04060 53.548 155 63 4 12 158 18 171 1.65e-48 162
MS.gene05196.t1 AT1G76420 50.932 161 71 4 11 165 19 177 2.02e-48 162
MS.gene05196.t1 AT3G15170 50.641 156 69 3 11 158 17 172 2.40e-48 161
MS.gene05196.t1 AT2G18060 51.875 160 67 5 16 167 11 168 2.80e-48 162
MS.gene05196.t1 AT2G18060 51.875 160 67 5 16 167 11 168 2.80e-48 162
MS.gene05196.t1 AT1G01720 52.121 165 66 4 12 166 5 166 4.22e-48 160
MS.gene05196.t1 AT5G66300 50.909 165 69 5 4 159 2 163 4.98e-48 160
MS.gene05196.t1 AT5G18270 52.258 155 65 3 12 158 19 172 5.25e-48 161
MS.gene05196.t1 AT4G36160 50.311 161 69 4 16 167 16 174 9.43e-48 161
MS.gene05196.t1 AT4G36160 50.311 161 69 4 16 167 12 170 9.80e-48 161
MS.gene05196.t1 AT4G36160 50.311 161 69 4 16 167 12 170 9.80e-48 161
MS.gene05196.t1 AT1G52880 49.718 177 73 3 18 178 21 197 1.03e-47 160
MS.gene05196.t1 AT5G62380 54.248 153 57 6 16 159 9 157 1.08e-47 160
MS.gene05196.t1 AT5G62380 54.248 153 57 6 16 159 9 157 1.08e-47 160
MS.gene05196.t1 AT4G27410 44.920 187 78 3 11 174 11 195 1.10e-47 159
MS.gene05196.t1 AT5G18270 52.258 155 65 3 12 158 19 172 1.13e-47 160
MS.gene05196.t1 AT3G17730 50.323 155 67 3 12 158 4 156 1.66e-47 157
MS.gene05196.t1 AT4G35580 47.396 192 82 6 15 197 9 190 4.06e-47 162
MS.gene05196.t1 AT3G10500 42.342 222 111 5 14 222 9 226 4.20e-47 163
MS.gene05196.t1 AT5G46590 49.367 158 70 3 10 158 2 158 4.28e-47 157
MS.gene05196.t1 AT4G35580 47.396 192 82 6 15 197 9 190 4.41e-47 163
MS.gene05196.t1 AT4G35580 47.396 192 82 6 15 197 9 190 5.01e-47 162
MS.gene05196.t1 AT2G33480 52.027 148 66 2 59 203 3 148 1.00e-46 154
MS.gene05196.t1 AT1G52890 50.625 160 71 3 11 164 11 168 1.01e-46 157
MS.gene05196.t1 AT3G10490 50.617 162 69 3 14 166 27 186 1.08e-46 154
MS.gene05196.t1 AT3G12977 49.375 160 72 4 11 163 15 172 1.25e-46 155
MS.gene05196.t1 AT3G29035 48.315 178 80 4 11 180 21 194 1.31e-46 157
MS.gene05196.t1 AT1G71930 50.000 150 66 3 16 158 11 158 1.52e-46 157
MS.gene05196.t1 AT1G71930 50.000 150 66 3 16 158 11 158 1.52e-46 157
MS.gene05196.t1 AT5G04410 51.534 163 69 3 14 168 9 169 1.69e-46 162
MS.gene05196.t1 AT3G10480 51.235 162 68 3 14 166 27 186 1.75e-46 159
MS.gene05196.t1 AT1G33060 52.288 153 62 4 15 158 24 174 2.30e-46 162
MS.gene05196.t1 AT1G33060 52.288 153 62 4 15 158 24 174 2.35e-46 162
MS.gene05196.t1 AT1G79580 49.682 157 70 3 10 159 13 167 2.46e-46 157
MS.gene05196.t1 AT1G79580 49.682 157 70 3 10 159 13 167 2.46e-46 157
MS.gene05196.t1 AT1G79580 49.682 157 70 3 10 159 13 167 2.46e-46 157
MS.gene05196.t1 AT1G79580 49.682 157 70 3 10 159 13 167 2.46e-46 157
MS.gene05196.t1 AT1G79580 49.682 157 70 3 10 159 13 167 2.46e-46 157
MS.gene05196.t1 AT5G63790 50.932 161 65 3 10 159 46 203 1.13e-45 154
MS.gene05196.t1 AT5G63790 50.932 161 65 3 10 159 56 213 1.59e-45 154
MS.gene05196.t1 AT5G08790 52.795 161 60 5 11 159 4 160 2.34e-45 152
MS.gene05196.t1 AT3G10480 50.932 161 69 3 14 166 27 185 2.54e-45 156
MS.gene05196.t1 AT3G61910 43.478 184 79 6 4 165 1 181 3.89e-45 153
MS.gene05196.t1 AT2G46770 44.944 178 74 4 4 159 6 181 4.97e-45 154
MS.gene05196.t1 AT3G15500 50.000 160 72 3 11 164 11 168 5.42e-45 152
MS.gene05196.t1 AT3G10490 50.617 162 69 3 14 166 27 186 5.56e-45 155
MS.gene05196.t1 AT1G32770 44.318 176 77 4 3 159 5 178 7.17e-45 153
MS.gene05196.t1 AT4G17980 46.541 159 75 2 10 158 2 160 1.78e-44 150
MS.gene05196.t1 AT5G39820 38.839 224 110 3 2 198 8 231 2.40e-44 151
MS.gene05196.t1 AT4G17980 46.541 159 75 2 10 158 2 160 2.93e-44 150
MS.gene05196.t1 AT1G56010 46.012 163 76 4 11 163 16 176 5.87e-44 150
MS.gene05196.t1 AT5G46590 48.276 145 69 2 10 149 2 145 8.12e-44 149
MS.gene05196.t1 AT1G26870 39.655 232 117 7 11 220 13 243 5.98e-43 150
MS.gene05196.t1 AT3G10480 42.564 195 68 3 14 166 27 219 1.40e-41 148
MS.gene05196.t1 AT4G28530 46.108 167 70 4 13 160 9 174 1.94e-41 144
MS.gene05196.t1 AT1G34190 48.466 163 70 5 16 168 18 176 6.06e-41 147
MS.gene05196.t1 AT1G34180 48.148 162 72 4 16 168 18 176 6.70e-41 145
MS.gene05196.t1 AT2G17040 48.649 148 70 3 15 158 7 152 1.48e-40 140
MS.gene05196.t1 AT3G49530 39.535 215 112 5 15 220 13 218 2.12e-40 143
MS.gene05196.t1 AT1G34180 48.148 162 72 4 16 168 18 176 3.04e-40 145
MS.gene05196.t1 AT3G49530 39.535 215 112 5 15 220 13 218 4.78e-40 143
MS.gene05196.t1 AT2G02450 41.799 189 95 5 14 198 51 228 5.33e-40 141
MS.gene05196.t1 AT1G34180 44.828 174 72 4 16 168 18 188 7.21e-40 142
MS.gene05196.t1 AT2G02450 41.799 189 95 5 14 198 51 228 8.58e-40 141
MS.gene05196.t1 AT2G43000 47.468 158 73 5 15 165 19 173 1.28e-39 137
MS.gene05196.t1 AT3G12910 46.296 162 67 5 15 156 22 183 1.53e-39 138
MS.gene05196.t1 AT5G09330 44.560 193 94 5 10 193 2 190 1.92e-39 142
MS.gene05196.t1 AT5G09330 44.560 193 94 5 10 193 2 190 1.92e-39 142
MS.gene05196.t1 AT5G09330 44.560 193 94 5 10 193 2 190 1.92e-39 142
MS.gene05196.t1 AT5G09330 44.560 193 94 5 10 193 2 190 1.92e-39 142
MS.gene05196.t1 AT5G09330 44.560 193 94 5 10 193 2 190 1.92e-39 142
MS.gene05196.t1 AT1G34180 44.828 174 72 4 16 168 18 188 2.95e-39 142
MS.gene05196.t1 AT1G32510 37.391 230 122 5 14 222 6 234 3.33e-39 137
MS.gene05196.t1 AT5G64060 43.713 167 84 3 10 168 2 166 4.94e-39 138
MS.gene05196.t1 AT5G24590 45.882 170 72 6 15 169 13 177 1.06e-38 139
MS.gene05196.t1 AT5G22290 38.919 185 101 4 14 194 21 197 5.34e-38 135
MS.gene05196.t1 AT2G27300 44.521 146 71 3 14 155 14 153 4.30e-37 132
MS.gene05196.t1 AT3G44290 41.566 166 84 4 15 176 15 171 1.40e-36 128
MS.gene05196.t1 AT3G44290 36.652 221 116 6 15 220 15 226 1.58e-36 131
MS.gene05196.t1 AT4G10350 54.545 99 40 2 64 159 18 114 4.27e-33 121
MS.gene05196.t1 AT5G04395 43.448 145 65 2 11 138 25 169 1.31e-32 117
MS.gene05196.t1 AT1G32870 45.930 172 77 5 7 168 5 170 1.22e-31 121
MS.gene05196.t1 AT1G32870 45.930 172 77 5 7 168 5 170 1.32e-31 121
MS.gene05196.t1 AT5G61430 53.774 106 42 3 64 164 6 109 1.44e-31 116
MS.gene05196.t1 AT1G32870 45.930 172 77 5 7 168 41 206 1.65e-31 121
MS.gene05196.t1 AT5G64530 39.024 164 70 4 12 156 1 153 8.38e-31 112
MS.gene05196.t1 AT5G64530 44.186 129 59 3 12 138 1 118 4.61e-30 109
MS.gene05196.t1 AT3G12977 53.398 103 42 3 65 163 19 119 1.40e-29 110
MS.gene05196.t1 AT1G02230 41.615 161 75 7 17 169 6 155 8.07e-29 111
MS.gene05196.t1 AT1G56010 49.020 102 44 2 68 163 10 109 4.56e-28 107
MS.gene05196.t1 AT5G14000 37.736 159 93 4 6 161 7 162 4.72e-28 105
MS.gene05196.t1 AT5G50820 37.173 191 99 7 6 184 8 189 7.77e-28 105
MS.gene05196.t1 AT4G01550 38.608 158 88 4 12 162 2 157 8.09e-28 110
MS.gene05196.t1 AT5G14000 39.456 147 84 3 7 150 8 152 9.28e-28 103
MS.gene05196.t1 AT1G02250 42.000 150 75 5 17 158 6 151 3.65e-26 104
MS.gene05196.t1 AT4G01540 40.127 157 82 6 15 163 5 157 1.83e-25 102
MS.gene05196.t1 AT4G01540 40.127 157 82 6 15 163 5 157 1.95e-25 103
MS.gene05196.t1 AT4G01540 40.268 149 79 5 15 155 5 151 2.11e-25 102
MS.gene05196.t1 AT4G01540 40.127 157 82 6 15 163 5 157 2.38e-25 103
MS.gene05196.t1 AT4G01520 39.355 155 82 6 17 163 7 157 7.11e-25 99.8
MS.gene05196.t1 AT5G22380 38.462 156 79 5 17 157 8 161 1.11e-24 97.8
MS.gene05196.t1 AT3G44350 38.065 155 81 5 17 158 8 160 4.75e-24 96.3
MS.gene05196.t1 AT3G04420 38.255 149 81 5 17 158 6 150 4.08e-23 94.7
MS.gene05196.t1 AT3G04420 38.255 149 81 5 17 158 6 150 4.75e-23 95.5
MS.gene05196.t1 AT3G44350 39.706 136 71 4 17 143 8 141 2.85e-22 89.7
MS.gene05196.t1 AT1G02220 37.975 158 76 7 17 164 6 151 3.78e-21 90.9
MS.gene05196.t1 AT2G18060 51.852 81 35 3 89 167 2 80 9.32e-21 88.2
MS.gene05196.t1 AT4G28530 38.760 129 60 3 13 122 9 137 1.07e-19 85.9
MS.gene05196.t1 AT3G10490 48.837 86 38 2 85 166 3 86 1.19e-19 86.3
MS.gene05196.t1 AT3G10490 48.837 86 38 2 85 166 3 86 1.19e-19 86.3
MS.gene05196.t1 AT2G43000 47.059 85 39 3 76 156 5 87 3.11e-17 77.0
MS.gene05196.t1 AT1G01010 34.810 158 80 7 17 158 6 156 4.56e-17 79.7
MS.gene05196.t1 AT3G55210 33.143 175 85 8 14 165 11 176 5.28e-16 75.5
MS.gene05196.t1 AT5G22290 39.048 105 56 3 90 194 2 98 1.01e-14 71.2
MS.gene05196.t1 AT3G56530 34.641 153 83 7 16 157 54 200 2.01e-14 71.2
MS.gene05196.t1 AT5G41090 28.221 163 94 6 13 159 6 161 2.51e-13 67.0
MS.gene05196.t1 AT5G14000 52.727 55 26 0 7 61 8 62 6.61e-12 63.5
MS.gene05196.t1 AT3G04430 31.915 141 81 4 20 146 6 145 1.50e-11 61.6
MS.gene05196.t1 AT1G28470 31.395 172 91 11 10 158 69 236 2.10e-11 62.8
MS.gene05196.t1 AT4G29230 31.429 175 87 10 12 158 46 215 2.48e-11 63.2
MS.gene05196.t1 AT4G29230 31.429 175 87 10 12 158 45 214 2.52e-11 62.8
MS.gene05196.t1 AT4G29230 30.460 174 90 9 12 158 46 215 3.10e-11 62.8

Find 51 sgRNAs with CRISPR-Local

Find 73 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCAATCCCATCCTCTTT+TGG 0.230199 6.3:-71376760 MS.gene05196:CDS
CCAAGCAATGACAGCAGTTT+TGG 0.265671 6.3:-71376883 MS.gene05196:CDS
TACTGGAAAGCAACTGGTTT+GGG 0.275750 6.3:-71377235 MS.gene05196:CDS
CTCTTAGATCGGTTCCCATT+TGG 0.336362 6.3:+71377274 None:intergenic
GAGCTACAAACTCTGGTTAC+TGG 0.339051 6.3:-71377252 MS.gene05196:CDS
ATCTTTGCAAGTCTGATCCT+TGG 0.370348 6.3:-71377543 MS.gene05196:CDS
AGAGGATGGGATTGAGGAGG+AGG 0.387672 6.3:+71376765 None:intergenic
TCTTTGCAAGTCTGATCCTT+GGG 0.393386 6.3:-71377542 MS.gene05196:CDS
TCGGTTCCCATTTGGATACT+TGG 0.402648 6.3:+71377282 None:intergenic
TCAAAGACTCATGAAGTTGT+TGG 0.413398 6.3:-71377196 MS.gene05196:CDS
TTACTGGAAAGCAACTGGTT+TGG 0.421422 6.3:-71377236 MS.gene05196:CDS
GGATGGGATTGAGGAGGAGG+AGG 0.435232 6.3:+71376768 None:intergenic
CTTCATCTGTTGGGTGAAAA+CGG 0.436169 6.3:+71377638 None:intergenic
AAAGAAGCCAAGTATCCAAA+TGG 0.440359 6.3:-71377289 MS.gene05196:CDS
ATGCATGATCCAATCAGTTC+TGG 0.442153 6.3:+71377126 None:intergenic
CCAAAACTGCTGTCATTGCT+TGG 0.451138 6.3:+71376883 None:intergenic
TTCAACTTCAAGTTCAAAAG+TGG 0.453095 6.3:-71376839 MS.gene05196:CDS
TCTGGTTACTGGAAAGCAAC+TGG 0.454286 6.3:-71377241 MS.gene05196:CDS
GACTTGCAAAGATCAACTTC+AGG 0.465462 6.3:+71377553 None:intergenic
GACCAAGGGGTTGGAGTGAG+AGG 0.467797 6.3:+71377087 None:intergenic
TCCAAAAGAGGATGGGATTG+AGG 0.467952 6.3:+71376759 None:intergenic
AAGATCAACTTCAGGAATGA+TGG 0.468508 6.3:+71377561 None:intergenic
TTCCTCTCACTCCAACCCCT+TGG 0.471467 6.3:-71377089 MS.gene05196:intron
CAACAAGTTCTTCATCTGTT+GGG 0.476925 6.3:+71377629 None:intergenic
ACAACAAGTTCTTCATCTGT+TGG 0.487978 6.3:+71377628 None:intergenic
GAATGATGGAAGCAGGTAAA+GGG 0.510410 6.3:+71377575 None:intergenic
CTCATGGTTCCAGAACTGAT+TGG 0.514422 6.3:-71377135 MS.gene05196:CDS
GGTTGGAGTGAGAGGAAGTG+AGG 0.514880 6.3:+71377095 None:intergenic
TAAGCATTTCCAAAAGAGGA+TGG 0.519212 6.3:+71376751 None:intergenic
AATGGAGAGGAGACAGTGAA+AGG 0.524667 6.3:-71376913 MS.gene05196:CDS
GTATTAAGCATTTCCAAAAG+AGG 0.532359 6.3:+71376747 None:intergenic
GGAATGATGGAAGCAGGTAA+AGG 0.533367 6.3:+71377574 None:intergenic
AAGCATTTCCAAAAGAGGAT+GGG 0.533996 6.3:+71376752 None:intergenic
ACTTCAGGAATGATGGAAGC+AGG 0.542259 6.3:+71377568 None:intergenic
AGTTTGTAGCTCTCTTAGAT+CGG 0.542330 6.3:+71377263 None:intergenic
TCTAAGAGAGCTACAAACTC+TGG 0.543930 6.3:-71377259 MS.gene05196:CDS
AAGAAGCCAAGTATCCAAAT+GGG 0.544681 6.3:-71377288 MS.gene05196:CDS
TGTTCAATACTTGAAGCGTA+AGG 0.550952 6.3:-71377608 MS.gene05196:CDS
AGAAAGACAGACCAAGGGGT+TGG 0.554284 6.3:+71377078 None:intergenic
GTTGGGTGAAAACGGAAACC+TGG 0.568855 6.3:+71377646 None:intergenic
TCTGATCCTTGGGATTTACC+TGG 0.570788 6.3:-71377532 MS.gene05196:intron
TGTGTCGCATATTTCTGAAG+AGG 0.578122 6.3:-71376951 MS.gene05196:CDS
TACAGAGGCAAACCACCTCA+TGG 0.581454 6.3:-71377151 MS.gene05196:CDS
CGCATATTTCTGAAGAGGAG+AGG 0.611502 6.3:-71376946 MS.gene05196:CDS
TACATACCAGGTAAATCCCA+AGG 0.614952 6.3:+71377526 None:intergenic
GGTGAAGTGAGATTGCTACC+AGG 0.621628 6.3:-71377664 MS.gene05196:CDS
TCAGTTCTGGAACCATGAGG+TGG 0.656678 6.3:+71377139 None:intergenic
AAAAGAGGATGGGATTGAGG+AGG 0.660083 6.3:+71376762 None:intergenic
TAGGTGATATGGAACAAGAG+AGG 0.664397 6.3:-71377327 MS.gene05196:CDS
ATATTTCTGAAGAGGAGAGG+TGG 0.674268 6.3:-71376943 MS.gene05196:CDS
CAATCAGTTCTGGAACCATG+AGG 0.718936 6.3:+71377136 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAAGAAAAGAAAAGAAA+AGG + chr6.3:71376941-71376960 None:intergenic 20.0%
!!! AGTTTAGTCTTGTAATTTAA+AGG - chr6.3:71377411-71377430 MS.gene05196:intron 20.0%
!! AAGATGAATTTTGTGAAGAA+TGG - chr6.3:71376756-71376775 MS.gene05196:CDS 25.0%
TAGTAGAAGTTATCATGTTC+CGG + chr6.3:71377045-71377064 None:intergenic 30.0%
! GGTTTTGCAGAATGAAAATT+GGG - chr6.3:71377464-71377483 MS.gene05196:intron 30.0%
! TTCAACTTCAAGTTCAAAAG+TGG - chr6.3:71377602-71377621 MS.gene05196:CDS 30.0%
!! GGTTGTTTTCTATGATTTCT+TGG - chr6.3:71377623-71377642 MS.gene05196:CDS 30.0%
!! TGTTGTTCTTTTAGGTGATA+TGG - chr6.3:71377103-71377122 MS.gene05196:CDS 30.0%
!!! AAAACTCTTGTTTTCTACAG+AGG - chr6.3:71377275-71377294 MS.gene05196:CDS 30.0%
AAAGAAGCCAAGTATCCAAA+TGG - chr6.3:71377152-71377171 MS.gene05196:CDS 35.0%
AAGAAGCCAAGTATCCAAAT+GGG - chr6.3:71377153-71377172 MS.gene05196:CDS 35.0%
AAGATCAACTTCAGGAATGA+TGG + chr6.3:71376883-71376902 None:intergenic 35.0%
AAGCATTTCCAAAAGAGGAT+GGG + chr6.3:71377692-71377711 None:intergenic 35.0%
ACAACAAGTTCTTCATCTGT+TGG + chr6.3:71376816-71376835 None:intergenic 35.0%
AGTTTGTAGCTCTCTTAGAT+CGG + chr6.3:71377181-71377200 None:intergenic 35.0%
ATTCAAAGAAAGACAGACCA+AGG + chr6.3:71377372-71377391 None:intergenic 35.0%
CAACAAGTTCTTCATCTGTT+GGG + chr6.3:71376815-71376834 None:intergenic 35.0%
TAAGCATTTCCAAAAGAGGA+TGG + chr6.3:71377693-71377712 None:intergenic 35.0%
TCAAAGACTCATGAAGTTGT+TGG - chr6.3:71377245-71377264 MS.gene05196:CDS 35.0%
TGTTCAATACTTGAAGCGTA+AGG - chr6.3:71376833-71376852 MS.gene05196:CDS 35.0%
TTCAAAGAAAGACAGACCAA+GGG + chr6.3:71377371-71377390 None:intergenic 35.0%
! GAAAAGAAAAGGTACATACC+AGG + chr6.3:71376930-71376949 None:intergenic 35.0%
! GGGTTTTGCAGAATGAAAAT+TGG - chr6.3:71377463-71377482 MS.gene05196:intron 35.0%
!! TGAGTGTGTGTTGTTCTTTT+AGG - chr6.3:71377095-71377114 MS.gene05196:CDS 35.0%
ATCTTTGCAAGTCTGATCCT+TGG - chr6.3:71376898-71376917 MS.gene05196:CDS 40.0%
ATGCATGATCCAATCAGTTC+TGG + chr6.3:71377318-71377337 None:intergenic 40.0%
CTACTGCAAACAATGTCATG+TGG - chr6.3:71377065-71377084 MS.gene05196:intron 40.0%
CTTCATCTGTTGGGTGAAAA+CGG + chr6.3:71376806-71376825 None:intergenic 40.0%
GACTTGCAAAGATCAACTTC+AGG + chr6.3:71376891-71376910 None:intergenic 40.0%
TACATACCAGGTAAATCCCA+AGG + chr6.3:71376918-71376937 None:intergenic 40.0%
TAGGTGATATGGAACAAGAG+AGG - chr6.3:71377114-71377133 MS.gene05196:CDS 40.0%
TCAAAGAAAGACAGACCAAG+GGG + chr6.3:71377370-71377389 None:intergenic 40.0%
TCTAAGAGAGCTACAAACTC+TGG - chr6.3:71377182-71377201 MS.gene05196:CDS 40.0%
TCTTTGCAAGTCTGATCCTT+GGG - chr6.3:71376899-71376918 MS.gene05196:CDS 40.0%
TTACTGGAAAGCAACTGGTT+TGG - chr6.3:71377205-71377224 MS.gene05196:CDS 40.0%
! ATATTTCTGAAGAGGAGAGG+TGG - chr6.3:71377498-71377517 MS.gene05196:intron 40.0%
! GAATGATGGAAGCAGGTAAA+GGG + chr6.3:71376869-71376888 None:intergenic 40.0%
! TACTGGAAAGCAACTGGTTT+GGG - chr6.3:71377206-71377225 MS.gene05196:CDS 40.0%
! TGTGTCGCATATTTCTGAAG+AGG - chr6.3:71377490-71377509 MS.gene05196:intron 40.0%
AAAAGAGGATGGGATTGAGG+AGG + chr6.3:71377682-71377701 None:intergenic 45.0%
AATGGAGAGGAGACAGTGAA+AGG - chr6.3:71377528-71377547 MS.gene05196:intron 45.0%
ACACTGACACATTCAGACAC+CGG - chr6.3:71377023-71377042 MS.gene05196:intron 45.0%
CCAAAACTGCTGTCATTGCT+TGG + chr6.3:71377561-71377580 None:intergenic 45.0%
CTCATGGTTCCAGAACTGAT+TGG - chr6.3:71377306-71377325 MS.gene05196:CDS 45.0%
GAGCTACAAACTCTGGTTAC+TGG - chr6.3:71377189-71377208 MS.gene05196:CDS 45.0%
TCCAAAAGAGGATGGGATTG+AGG + chr6.3:71377685-71377704 None:intergenic 45.0%
TCGGTTCCCATTTGGATACT+TGG + chr6.3:71377162-71377181 None:intergenic 45.0%
TCTGATCCTTGGGATTTACC+TGG - chr6.3:71376909-71376928 MS.gene05196:CDS 45.0%
TCTGGTTACTGGAAAGCAAC+TGG - chr6.3:71377200-71377219 MS.gene05196:CDS 45.0%
TGAAGCACAGACACAGACAT+CGG - chr6.3:71376989-71377008 MS.gene05196:intron 45.0%
! ACTTCAGGAATGATGGAAGC+AGG + chr6.3:71376876-71376895 None:intergenic 45.0%
! AGGAGAGGTGGTGCTAAAAA+TGG - chr6.3:71377510-71377529 MS.gene05196:intron 45.0%
! AGGTGGTGCTAAAAATGGAG+AGG - chr6.3:71377515-71377534 MS.gene05196:intron 45.0%
! CCAAGCAATGACAGCAGTTT+TGG - chr6.3:71377558-71377577 MS.gene05196:CDS 45.0%
! CGCATATTTCTGAAGAGGAG+AGG - chr6.3:71377495-71377514 MS.gene05196:intron 45.0%
! CTCTTAGATCGGTTCCCATT+TGG + chr6.3:71377170-71377189 None:intergenic 45.0%
! GGAATGATGGAAGCAGGTAA+AGG + chr6.3:71376870-71376889 None:intergenic 45.0%
! TCCTCAATCCCATCCTCTTT+TGG - chr6.3:71377681-71377700 MS.gene05196:CDS 45.0%
!! CAATCAGTTCTGGAACCATG+AGG + chr6.3:71377308-71377327 None:intergenic 45.0%
!! CAATGACAGCAGTTTTGGTG+AGG - chr6.3:71377563-71377582 MS.gene05196:CDS 45.0%
!! AATATTAATATGAATAAATT+GGG - chr6.3:71377443-71377462 MS.gene05196:intron 5.0%
!! TAATATTAATATGAATAAAT+TGG - chr6.3:71377442-71377461 MS.gene05196:intron 5.0%
AGAAAGACAGACCAAGGGGT+TGG + chr6.3:71377366-71377385 None:intergenic 50.0%
CACAGACATCGGACACAACA+TGG - chr6.3:71377000-71377019 MS.gene05196:intron 50.0%
GGTGAAGTGAGATTGCTACC+AGG - chr6.3:71376777-71376796 MS.gene05196:CDS 50.0%
GTTGGGTGAAAACGGAAACC+TGG + chr6.3:71376798-71376817 None:intergenic 50.0%
TACAGAGGCAAACCACCTCA+TGG - chr6.3:71377290-71377309 MS.gene05196:CDS 50.0%
!! TCAGTTCTGGAACCATGAGG+TGG + chr6.3:71377305-71377324 None:intergenic 50.0%
AGAGGATGGGATTGAGGAGG+AGG + chr6.3:71377679-71377698 None:intergenic 55.0%
GGTTGGAGTGAGAGGAAGTG+AGG + chr6.3:71377349-71377368 None:intergenic 55.0%
TTCCTCTCACTCCAACCCCT+TGG - chr6.3:71377352-71377371 MS.gene05196:intron 55.0%
GACCAAGGGGTTGGAGTGAG+AGG + chr6.3:71377357-71377376 None:intergenic 60.0%
GGATGGGATTGAGGAGGAGG+AGG + chr6.3:71377676-71377695 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 71376750 71377713 71376750 ID=MS.gene05196
chr6.3 mRNA 71376750 71377713 71376750 ID=MS.gene05196.t1;Parent=MS.gene05196
chr6.3 exon 71377533 71377713 71377533 ID=MS.gene05196.t1.exon1;Parent=MS.gene05196.t1
chr6.3 CDS 71377533 71377713 71377533 ID=cds.MS.gene05196.t1;Parent=MS.gene05196.t1
chr6.3 exon 71377090 71377346 71377090 ID=MS.gene05196.t1.exon2;Parent=MS.gene05196.t1
chr6.3 CDS 71377090 71377346 71377090 ID=cds.MS.gene05196.t1;Parent=MS.gene05196.t1
chr6.3 exon 71376750 71376989 71376750 ID=MS.gene05196.t1.exon3;Parent=MS.gene05196.t1
chr6.3 CDS 71376750 71376989 71376750 ID=cds.MS.gene05196.t1;Parent=MS.gene05196.t1
Gene Sequence

>MS.gene05196

ATGGAGAAGATGAATTTTGTGAAGAATGGTGAAGTGAGATTGCTACCAGGTTTCCGTTTTCACCCAACAGATGAAGAACTTGTTGTTCAATACTTGAAGCGTAAGGTCTTCTCTTTCCCTTTACCTGCTTCCATCATTCCTGAAGTTGATCTTTGCAAGTCTGATCCTTGGGATTTACCTGGTATGTACCTTTTCTTTTCTTTTCTTTTCTTTTTCGTTCGTTTATAATCATAACTTAATGAAGCACAGACACAGACATCGGACACAACATGGACACTGACACATTCAGACACCGGAACATGATAACTTCTACTACTACTGCAAACAATGTCATGTGGATTGATTTGAGTGTGTGTTGTTCTTTTAGGTGATATGGAACAAGAGAGGTACTTTTTCAGTACAAAAGAAGCCAAGTATCCAAATGGGAACCGATCTAAGAGAGCTACAAACTCTGGTTACTGGAAAGCAACTGGTTTGGGCAAACAAATCATGAATTCAAAGACTCATGAAGTTGTTGGCATGAAGAAAACTCTTGTTTTCTACAGAGGCAAACCACCTCATGGTTCCAGAACTGATTGGATCATGCATGAATATCGCCTCACTTCCTCTCACTCCAACCCCTTGGTCTGTCTTTCTTTGAATATGTACATTTGTAATTAAGAGTTTAGTCTTGTAATTTAAAGGTGTTGAATTAATATTAATATGAATAAATTGGGTTTTGCAGAATGAAAATTGGGTTCTGTGTCGCATATTTCTGAAGAGGAGAGGTGGTGCTAAAAATGGAGAGGAGACAGTGAAAGGAGTGAAGCCAAGCAATGACAGCAGTTTTGGTGAGGTAAAGAAGAACTCAGCTTCAACTTCAAGTTCAAAAGTGGTTGTTTTCTATGATTTCTTGGCAGAGAAGAAGAAAAATTCTGATGCATCCTCCTCCTCCTCAATCCCATCCTCTTTTGGAAATGCTTAA
Protein sequence

>MS.gene05196.t1

MEKMNFVKNGEVRLLPGFRFHPTDEELVVQYLKRKVFSFPLPASIIPEVDLCKSDPWDLPGDMEQERYFFSTKEAKYPNGNRSKRATNSGYWKATGLGKQIMNSKTHEVVGMKKTLVFYRGKPPHGSRTDWIMHEYRLTSSHSNPLNENWVLCRIFLKRRGGAKNGEETVKGVKPSNDSSFGEVKKNSASTSSSKVVVFYDFLAEKKKNSDASSSSSIPSSFGNA