AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05201

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05201.t1 MTR_7g005280 79.297 256 22 6 1 225 1 256 6.88e-132 372
MS.gene05201.t1 MTR_8g099750 59.091 176 61 3 1 166 1 175 3.88e-71 216
MS.gene05201.t1 MTR_3g098810 57.865 178 63 3 1 166 1 178 5.54e-68 209
MS.gene05201.t1 MTR_3g098810 60.265 151 57 2 1 148 1 151 4.40e-61 189
MS.gene05201.t1 MTR_4g089135 53.714 175 52 3 13 158 14 188 2.00e-55 180
MS.gene05201.t1 MTR_7g085220 45.045 222 93 7 11 203 5 226 1.19e-54 178
MS.gene05201.t1 MTR_5g041940 55.696 158 58 3 12 159 1 156 3.68e-54 174
MS.gene05201.t1 MTR_2g080010 55.556 162 55 3 14 158 15 176 4.65e-54 177
MS.gene05201.t1 MTR_4g081870 56.604 159 57 4 14 162 9 165 4.78e-54 174
MS.gene05201.t1 MTR_7g100990 46.316 190 91 4 9 188 6 194 2.84e-52 172
MS.gene05201.t1 MTR_7g070140 55.689 167 30 2 59 225 12 134 4.98e-52 165
MS.gene05201.t1 MTR_3g064580 55.814 172 64 6 12 173 4 173 2.85e-51 176
MS.gene05201.t1 MTR_3g088110 55.696 158 58 4 11 159 4 158 6.89e-51 167
MS.gene05201.t1 MTR_2157s0010 52.795 161 60 4 14 158 8 168 2.60e-50 165
MS.gene05201.t1 MTR_2g064090 42.017 238 110 8 12 224 4 238 3.91e-50 167
MS.gene05201.t1 MTR_3g109340 50.633 158 74 2 11 164 19 176 4.16e-50 167
MS.gene05201.t1 MTR_3g109340 50.314 159 74 2 11 164 19 177 7.20e-50 166
MS.gene05201.t1 MTR_4g035590 47.541 183 78 5 14 181 8 187 7.28e-50 166
MS.gene05201.t1 MTR_2g093810 51.974 152 63 2 14 155 14 165 2.27e-49 164
MS.gene05201.t1 MTR_4g108760 49.143 175 76 5 1 164 1 173 2.84e-49 165
MS.gene05201.t1 MTR_4g036030 52.597 154 64 4 13 159 6 157 3.40e-49 164
MS.gene05201.t1 MTR_1g069805 41.951 205 108 4 14 210 10 211 4.79e-49 162
MS.gene05201.t1 MTR_1g008740 51.875 160 71 3 11 164 24 183 6.43e-49 164
MS.gene05201.t1 MTR_1g008740 51.875 160 71 3 11 164 10 169 6.50e-49 163
MS.gene05201.t1 MTR_5g021710 47.929 169 79 4 11 172 5 171 2.13e-48 162
MS.gene05201.t1 MTR_2g078700 49.375 160 73 2 11 162 20 179 2.82e-48 162
MS.gene05201.t1 MTR_2g062730 49.045 157 72 3 10 159 6 161 1.22e-47 160
MS.gene05201.t1 MTR_3g435150 50.000 162 71 3 11 164 13 172 1.49e-47 159
MS.gene05201.t1 MTR_5g012080 49.032 155 70 3 13 159 6 159 1.72e-47 160
MS.gene05201.t1 MTR_2g079990 52.174 161 69 3 10 164 12 170 2.63e-47 159
MS.gene05201.t1 MTR_5g076850 54.777 157 57 6 12 158 4 156 3.00e-47 165
MS.gene05201.t1 MTR_8g094580 51.553 161 63 4 10 159 3 159 4.41e-47 157
MS.gene05201.t1 MTR_6g084430 39.035 228 120 5 11 221 2 227 4.47e-47 158
MS.gene05201.t1 MTR_6g477900 49.091 165 73 4 12 168 4 165 8.52e-47 155
MS.gene05201.t1 MTR_4g101680 50.649 154 67 3 13 159 6 157 1.31e-46 158
MS.gene05201.t1 MTR_7g070150 70.175 114 12 2 102 215 1 92 1.96e-46 149
MS.gene05201.t1 MTR_6g012670 48.750 160 72 4 13 164 19 176 2.61e-46 156
MS.gene05201.t1 MTR_1g096430 47.879 165 77 3 11 168 4 166 3.77e-46 156
MS.gene05201.t1 MTR_8g076110 50.327 153 67 4 14 159 6 156 6.37e-46 155
MS.gene05201.t1 MTR_3g096920 51.572 159 65 3 10 159 3 158 2.11e-45 153
MS.gene05201.t1 MTR_8g059170 53.205 156 63 4 11 158 11 164 2.75e-45 154
MS.gene05201.t1 MTR_3g070030 48.214 168 74 5 7 164 12 176 3.30e-45 154
MS.gene05201.t1 MTR_7g097090 50.000 146 69 2 14 156 10 154 7.37e-45 151
MS.gene05201.t1 MTR_8g024480 43.750 176 79 3 2 159 3 176 9.94e-45 154
MS.gene05201.t1 MTR_6g032770 46.452 155 75 2 12 158 16 170 1.91e-44 152
MS.gene05201.t1 MTR_7g085260 48.538 171 75 5 1 158 1 171 4.47e-44 152
MS.gene05201.t1 MTR_5g014300 39.899 198 109 2 10 197 2 199 4.62e-44 150
MS.gene05201.t1 MTR_5g040420 39.437 213 109 3 1 199 1 207 9.73e-44 151
MS.gene05201.t1 MTR_2g064470 46.108 167 73 5 4 160 1 160 2.66e-43 148
MS.gene05201.t1 MTR_7g011120 46.552 174 74 5 7 164 1 171 5.11e-43 147
MS.gene05201.t1 MTR_8g467490 42.458 179 88 2 1 164 1 179 6.09e-43 149
MS.gene05201.t1 MTR_4g098630 44.767 172 86 3 14 176 6 177 6.11e-43 147
MS.gene05201.t1 MTR_5g090970 48.780 164 68 5 8 156 13 175 6.97e-43 147
MS.gene05201.t1 MTR_2g079990 44.444 189 69 3 10 164 12 198 7.09e-43 149
MS.gene05201.t1 MTR_5g090970 48.485 165 68 5 8 156 13 176 2.34e-42 145
MS.gene05201.t1 MTR_7g011130 43.333 180 77 4 7 164 12 188 5.90e-42 145
MS.gene05201.t1 MTR_3g116070 50.694 144 67 3 8 147 17 160 9.02e-42 145
MS.gene05201.t1 MTR_2g068880 41.885 191 86 5 6 175 13 199 1.17e-41 144
MS.gene05201.t1 MTR_3g096920 55.224 134 54 2 10 140 3 133 5.84e-41 142
MS.gene05201.t1 MTR_3g096140 46.012 163 74 5 16 168 9 167 8.61e-41 140
MS.gene05201.t1 MTR_3g093040 45.161 155 75 3 12 158 106 258 9.01e-41 141
MS.gene05201.t1 MTR_2g068920 44.134 179 78 5 1 159 9 185 4.36e-40 139
MS.gene05201.t1 MTR_3g096140 46.012 163 74 5 16 168 9 167 5.93e-40 140
MS.gene05201.t1 MTR_3g070040 44.048 168 79 3 7 164 1 163 7.12e-40 140
MS.gene05201.t1 MTR_5g069030 49.032 155 69 3 13 159 24 176 7.86e-40 144
MS.gene05201.t1 MTR_6g011860 46.250 160 70 4 14 158 15 173 8.23e-40 140
MS.gene05201.t1 MTR_3g093050 42.162 185 84 5 14 190 22 191 1.19e-39 144
MS.gene05201.t1 MTR_3g093050 42.162 185 84 5 14 190 22 191 1.52e-39 144
MS.gene05201.t1 MTR_0036s0150 46.875 160 75 4 16 167 7 164 7.08e-39 141
MS.gene05201.t1 MTR_1g090720 48.521 169 69 4 14 167 42 207 7.45e-39 140
MS.gene05201.t1 MTR_1g090723 44.068 177 88 4 16 183 10 184 1.09e-38 141
MS.gene05201.t1 MTR_1g097300 46.951 164 71 5 16 168 21 179 1.19e-38 140
MS.gene05201.t1 MTR_1g090723 43.750 176 89 4 16 183 10 183 1.92e-38 140
MS.gene05201.t1 MTR_1g090723 43.750 176 89 4 16 183 10 183 2.52e-38 140
MS.gene05201.t1 MTR_8g063550 42.771 166 81 4 13 168 5 166 2.80e-37 133
MS.gene05201.t1 MTR_8g063550 42.771 166 81 4 13 168 5 166 6.94e-37 134
MS.gene05201.t1 MTR_8g063550 42.771 166 81 4 13 168 5 166 9.50e-37 134
MS.gene05201.t1 MTR_2g086880 45.833 144 68 3 16 155 20 157 1.56e-36 134
MS.gene05201.t1 MTR_2g086880 45.833 144 68 3 16 155 20 157 2.07e-36 134
MS.gene05201.t1 MTR_8g093580 42.771 166 81 4 13 168 5 166 2.53e-36 133
MS.gene05201.t1 MTR_4g134460 44.805 154 78 4 16 165 56 206 1.19e-34 128
MS.gene05201.t1 MTR_8g023840 44.595 148 73 4 14 155 11 155 1.35e-34 127
MS.gene05201.t1 MTR_4g075980 41.975 162 86 5 1 158 4 161 1.89e-33 122
MS.gene05201.t1 MTR_4g094302 37.725 167 85 4 14 169 11 169 1.86e-32 116
MS.gene05201.t1 MTR_4g094302 42.520 127 64 2 14 138 11 130 1.01e-30 111
MS.gene05201.t1 MTR_3g096140 42.384 151 73 5 31 171 3 149 3.32e-30 114
MS.gene05201.t1 MTR_8g023860 39.333 150 82 4 13 156 11 157 5.87e-30 115
MS.gene05201.t1 MTR_8g023930 37.634 186 97 6 14 193 24 196 2.75e-28 111
MS.gene05201.t1 MTR_2g086690 39.623 159 78 6 15 157 5 161 1.01e-27 106
MS.gene05201.t1 MTR_8g023900 40.000 160 84 5 17 170 196 349 4.38e-27 108
MS.gene05201.t1 MTR_8g023900 38.509 161 90 4 14 168 12 169 6.15e-27 107
MS.gene05201.t1 MTR_4g052620 39.241 158 81 6 14 157 5 161 5.11e-27 104
MS.gene05201.t1 MTR_8g093790 38.608 158 75 6 12 166 8 146 1.72e-26 101
MS.gene05201.t1 MTR_8g094580 50.485 103 41 3 64 159 6 105 7.62e-25 98.2
MS.gene05201.t1 MTR_8g023880 35.821 201 93 8 14 193 7 192 7.65e-25 99.0
MS.gene05201.t1 MTR_7g105170 34.524 168 84 7 14 160 4 166 2.24e-23 94.7
MS.gene05201.t1 MTR_5g061450 75.000 72 14 2 157 225 14 84 1.33e-21 85.5
MS.gene05201.t1 MTR_7g083370 33.099 142 86 5 7 143 3 140 4.71e-20 83.2
MS.gene05201.t1 MTR_3g096400 34.337 166 77 7 12 156 5 159 1.77e-19 83.2
MS.gene05201.t1 MTR_7g083360 34.815 135 79 6 7 136 3 133 3.92e-19 81.3
MS.gene05201.t1 MTR_5g061420 72.222 72 16 2 157 225 14 84 1.24e-18 77.8
MS.gene05201.t1 MTR_7g083330 35.294 136 79 5 6 136 10 141 1.03e-16 75.5
MS.gene05201.t1 MTR_1g045470 36.111 144 79 5 22 154 13 154 1.29e-16 77.4
MS.gene05201.t1 MTR_7g116460 32.192 146 86 5 20 154 11 154 3.80e-15 71.6
MS.gene05201.t1 MTR_4g078875 27.311 238 142 11 14 225 48 280 5.67e-13 67.0
MS.gene05201.t1 MTR_2g014680 31.973 147 72 8 14 138 53 193 2.29e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05201.t1 AT5G13180 71.856 167 45 1 1 165 1 167 3.65e-89 263
MS.gene05201.t1 AT2G33480 59.512 205 79 3 1 203 1 203 8.48e-83 248
MS.gene05201.t1 AT2G33480 58.937 207 79 3 1 203 1 205 2.05e-82 247
MS.gene05201.t1 AT1G61110 55.689 167 55 4 10 158 12 177 4.76e-54 176
MS.gene05201.t1 AT1G77450 49.239 197 86 5 10 196 6 198 7.26e-54 173
MS.gene05201.t1 AT3G04070 54.491 167 60 4 8 158 4 170 1.61e-53 175
MS.gene05201.t1 AT1G69490 55.901 161 58 4 14 164 9 166 2.51e-53 172
MS.gene05201.t1 AT5G39610 44.762 210 101 5 12 208 18 225 2.37e-52 171
MS.gene05201.t1 AT3G04070 51.412 177 54 4 14 158 10 186 1.86e-51 170
MS.gene05201.t1 AT1G65910 44.444 207 97 5 12 210 4 200 3.33e-51 175
MS.gene05201.t1 AT5G07680 51.852 162 68 4 11 164 14 173 4.77e-51 169
MS.gene05201.t1 AT5G61430 53.086 162 66 5 11 164 13 172 6.48e-51 168
MS.gene05201.t1 AT3G15510 55.063 158 54 3 18 158 21 178 6.67e-51 169
MS.gene05201.t1 AT5G07680 52.830 159 65 4 14 164 3 159 7.55e-51 167
MS.gene05201.t1 AT2G24430 51.852 162 73 2 8 164 10 171 9.82e-51 167
MS.gene05201.t1 AT2G24430 51.852 162 73 2 8 164 10 171 9.82e-51 167
MS.gene05201.t1 AT1G54330 55.844 154 57 3 12 158 4 153 1.75e-50 166
MS.gene05201.t1 AT5G17260 43.946 223 105 5 12 225 4 215 6.09e-50 169
MS.gene05201.t1 AT3G03200 40.435 230 119 5 12 225 4 231 8.55e-50 169
MS.gene05201.t1 AT1G33280 51.316 152 66 2 14 159 8 157 8.67e-50 164
MS.gene05201.t1 AT4G27410 48.824 170 79 3 11 174 11 178 9.92e-50 164
MS.gene05201.t1 AT3G18400 51.572 159 70 4 11 164 2 158 3.31e-49 163
MS.gene05201.t1 AT4G10350 52.258 155 63 4 14 159 9 161 5.69e-49 163
MS.gene05201.t1 AT1G12260 50.633 158 69 4 14 164 7 162 7.87e-49 163
MS.gene05201.t1 AT1G12260 50.633 158 69 4 14 164 7 162 2.95e-48 163
MS.gene05201.t1 AT1G76420 50.311 161 72 4 11 165 19 177 3.27e-48 161
MS.gene05201.t1 AT5G53950 51.634 153 66 2 14 158 17 169 4.21e-48 162
MS.gene05201.t1 AT3G04060 52.903 155 64 4 12 158 18 171 5.71e-48 161
MS.gene05201.t1 AT1G62700 51.899 158 67 4 13 163 6 161 7.51e-48 162
MS.gene05201.t1 AT1G62700 51.899 158 67 4 13 163 6 161 7.51e-48 162
MS.gene05201.t1 AT3G15170 50.000 156 70 3 11 158 17 172 9.49e-48 159
MS.gene05201.t1 AT5G18270 51.613 155 66 3 12 158 19 172 1.92e-47 159
MS.gene05201.t1 AT2G18060 50.617 162 70 5 14 167 9 168 2.60e-47 160
MS.gene05201.t1 AT2G18060 50.617 162 70 5 14 167 9 168 2.60e-47 160
MS.gene05201.t1 AT1G01720 51.515 165 67 4 12 166 5 166 2.75e-47 157
MS.gene05201.t1 AT5G66300 50.303 165 70 5 4 159 2 163 3.31e-47 157
MS.gene05201.t1 AT4G27410 44.385 187 79 3 11 174 11 195 3.57e-47 158
MS.gene05201.t1 AT5G18270 51.613 155 66 3 12 158 19 172 3.76e-47 159
MS.gene05201.t1 AT5G62380 52.229 157 62 6 12 159 5 157 4.18e-47 159
MS.gene05201.t1 AT5G62380 52.229 157 62 6 12 159 5 157 4.18e-47 159
MS.gene05201.t1 AT3G17730 49.677 155 68 3 12 158 4 156 7.04e-47 155
MS.gene05201.t1 AT4G36160 46.591 176 83 4 1 167 1 174 8.90e-47 159
MS.gene05201.t1 AT4G36160 49.080 163 72 4 14 167 10 170 9.57e-47 159
MS.gene05201.t1 AT4G36160 49.080 163 72 4 14 167 10 170 9.57e-47 159
MS.gene05201.t1 AT1G52880 51.852 162 62 3 18 163 21 182 1.38e-46 157
MS.gene05201.t1 AT5G46590 48.734 158 71 3 10 158 2 158 1.71e-46 155
MS.gene05201.t1 AT1G52890 50.000 160 72 3 11 164 11 168 2.62e-46 156
MS.gene05201.t1 AT3G29035 47.753 178 81 4 11 180 21 194 3.78e-46 155
MS.gene05201.t1 AT4G35580 46.354 192 85 5 14 197 9 190 4.02e-46 160
MS.gene05201.t1 AT4G35580 46.354 192 85 5 14 197 9 190 4.97e-46 160
MS.gene05201.t1 AT4G35580 46.354 192 85 5 14 197 9 190 5.11e-46 160
MS.gene05201.t1 AT3G12977 48.750 160 73 4 11 163 15 172 6.97e-46 154
MS.gene05201.t1 AT1G79580 49.045 157 71 3 10 159 13 167 8.18e-46 156
MS.gene05201.t1 AT1G79580 49.045 157 71 3 10 159 13 167 8.18e-46 156
MS.gene05201.t1 AT1G79580 49.045 157 71 3 10 159 13 167 8.18e-46 156
MS.gene05201.t1 AT1G79580 49.045 157 71 3 10 159 13 167 8.18e-46 156
MS.gene05201.t1 AT1G79580 49.045 157 71 3 10 159 13 167 8.18e-46 156
MS.gene05201.t1 AT1G71930 48.684 152 69 3 14 158 9 158 1.17e-45 154
MS.gene05201.t1 AT1G71930 48.684 152 69 3 14 158 9 158 1.17e-45 154
MS.gene05201.t1 AT1G33060 50.980 153 65 3 14 158 24 174 2.15e-45 160
MS.gene05201.t1 AT1G33060 50.980 153 65 3 14 158 24 174 2.16e-45 160
MS.gene05201.t1 AT3G10500 41.441 222 113 5 14 222 9 226 4.28e-45 158
MS.gene05201.t1 AT5G63790 50.311 161 66 3 10 159 46 203 7.29e-45 152
MS.gene05201.t1 AT3G10490 49.383 162 71 3 14 166 27 186 8.35e-45 150
MS.gene05201.t1 AT5G63790 50.311 161 66 3 10 159 56 213 9.69e-45 152
MS.gene05201.t1 AT5G08790 52.174 161 61 5 11 159 4 160 1.28e-44 150
MS.gene05201.t1 AT3G61910 42.935 184 80 6 4 165 1 181 1.39e-44 152
MS.gene05201.t1 AT2G33480 50.676 148 68 2 59 203 3 148 1.79e-44 148
MS.gene05201.t1 AT5G04410 50.307 163 71 3 14 168 9 169 1.83e-44 156
MS.gene05201.t1 AT3G10480 50.000 162 70 3 14 166 27 186 1.94e-44 154
MS.gene05201.t1 AT3G15500 49.375 160 73 3 11 164 11 168 2.00e-44 151
MS.gene05201.t1 AT2G46770 44.382 178 75 4 4 159 6 181 2.45e-44 152
MS.gene05201.t1 AT1G32770 43.750 176 78 4 3 159 5 178 4.87e-44 151
MS.gene05201.t1 AT4G17980 45.912 159 76 2 10 158 2 160 8.22e-44 148
MS.gene05201.t1 AT4G17980 45.912 159 76 2 10 158 2 160 1.18e-43 148
MS.gene05201.t1 AT1G56010 45.399 163 77 4 11 163 16 176 2.94e-43 148
MS.gene05201.t1 AT3G10480 49.689 161 71 3 14 166 27 185 3.05e-43 151
MS.gene05201.t1 AT5G46590 47.586 145 70 2 10 149 2 145 3.53e-43 147
MS.gene05201.t1 AT3G10490 49.383 162 71 3 14 166 27 186 8.89e-43 150
MS.gene05201.t1 AT5G39820 42.391 184 79 3 2 158 8 191 6.92e-41 142
MS.gene05201.t1 AT4G28530 44.509 173 76 4 7 160 3 174 9.05e-41 142
MS.gene05201.t1 AT3G10480 41.538 195 70 3 14 166 27 219 1.28e-39 142
MS.gene05201.t1 AT3G49530 38.605 215 115 4 14 220 13 218 1.69e-39 140
MS.gene05201.t1 AT1G26870 38.362 232 120 7 11 220 13 243 2.12e-39 140
MS.gene05201.t1 AT3G49530 38.605 215 115 4 14 220 13 218 2.87e-39 141
MS.gene05201.t1 AT1G34190 47.239 163 72 5 16 168 18 176 7.06e-39 141
MS.gene05201.t1 AT1G34180 46.914 162 74 4 16 168 18 176 7.35e-39 139
MS.gene05201.t1 AT1G32510 37.391 230 122 6 14 222 6 234 1.08e-38 135
MS.gene05201.t1 AT1G34180 46.914 162 74 4 16 168 18 176 2.85e-38 139
MS.gene05201.t1 AT5G24590 44.706 170 75 5 14 169 13 177 7.66e-38 137
MS.gene05201.t1 AT1G34180 43.678 174 74 4 16 168 18 188 8.60e-38 137
MS.gene05201.t1 AT2G17040 46.939 147 72 3 16 158 8 152 1.03e-37 132
MS.gene05201.t1 AT5G09330 43.523 193 96 5 10 193 2 190 3.04e-37 135
MS.gene05201.t1 AT5G09330 43.523 193 96 5 10 193 2 190 3.04e-37 135
MS.gene05201.t1 AT5G09330 43.523 193 96 5 10 193 2 190 3.04e-37 135
MS.gene05201.t1 AT5G09330 43.523 193 96 5 10 193 2 190 3.04e-37 135
MS.gene05201.t1 AT5G09330 43.523 193 96 5 10 193 2 190 3.04e-37 135
MS.gene05201.t1 AT1G34180 43.678 174 74 4 16 168 18 188 3.61e-37 137
MS.gene05201.t1 AT5G64060 42.515 167 86 3 10 168 2 166 5.02e-37 133
MS.gene05201.t1 AT2G43000 46.622 148 70 4 16 156 20 165 6.73e-37 130
MS.gene05201.t1 AT2G02450 41.176 187 95 5 16 198 53 228 7.56e-37 133
MS.gene05201.t1 AT2G02450 41.176 187 95 5 16 198 53 228 9.03e-37 133
MS.gene05201.t1 AT3G12910 44.720 161 69 5 16 156 23 183 1.12e-36 130
MS.gene05201.t1 AT5G22290 38.251 183 101 4 16 194 23 197 1.80e-35 128
MS.gene05201.t1 AT3G44290 40.606 165 85 4 16 176 16 171 2.48e-34 122
MS.gene05201.t1 AT2G27300 43.151 146 73 3 14 155 14 153 2.52e-34 125
MS.gene05201.t1 AT3G44290 35.909 220 117 6 16 220 16 226 2.92e-34 125
MS.gene05201.t1 AT5G04395 42.759 145 66 2 11 138 25 169 2.83e-32 116
MS.gene05201.t1 AT5G64530 39.024 164 70 4 12 156 1 153 3.41e-31 113
MS.gene05201.t1 AT4G10350 52.525 99 42 2 64 159 18 114 5.27e-31 115
MS.gene05201.t1 AT5G64530 44.186 129 59 3 12 138 1 118 1.77e-30 110
MS.gene05201.t1 AT1G32870 44.767 172 79 5 7 168 5 170 9.76e-30 115
MS.gene05201.t1 AT1G32870 44.767 172 79 5 7 168 5 170 1.12e-29 115
MS.gene05201.t1 AT1G32870 44.767 172 79 5 7 168 41 206 1.31e-29 115
MS.gene05201.t1 AT5G61430 51.887 106 44 3 64 164 6 109 1.82e-29 111
MS.gene05201.t1 AT5G14000 37.736 159 93 4 6 161 7 162 1.25e-28 107
MS.gene05201.t1 AT5G14000 39.456 147 84 3 7 150 8 152 3.05e-28 105
MS.gene05201.t1 AT3G12977 51.456 103 44 3 65 163 19 119 1.83e-27 104
MS.gene05201.t1 AT5G50820 36.979 192 98 8 6 184 8 189 1.84e-27 103
MS.gene05201.t1 AT1G02230 40.491 163 78 7 15 169 4 155 3.48e-27 107
MS.gene05201.t1 AT1G56010 47.059 102 46 2 68 163 10 109 6.02e-26 101
MS.gene05201.t1 AT4G01550 37.255 153 87 4 17 162 7 157 5.04e-25 102
MS.gene05201.t1 AT1G02250 40.789 152 78 5 15 158 4 151 6.45e-25 100
MS.gene05201.t1 AT4G01520 38.217 157 85 6 15 163 5 157 1.68e-23 96.3
MS.gene05201.t1 AT4G01540 38.710 155 83 6 17 163 7 157 2.87e-23 96.7
MS.gene05201.t1 AT4G01540 38.710 155 83 6 17 163 7 157 3.23e-23 97.1
MS.gene05201.t1 AT4G01540 38.710 155 83 6 17 163 7 157 3.35e-23 97.1
MS.gene05201.t1 AT4G01540 38.710 155 83 6 17 163 7 157 3.81e-23 97.1
MS.gene05201.t1 AT5G22380 37.179 156 81 5 17 157 8 161 1.73e-22 92.0
MS.gene05201.t1 AT3G44350 36.709 158 85 5 14 158 5 160 5.41e-22 90.9
MS.gene05201.t1 AT3G04420 37.086 151 84 5 15 158 4 150 1.71e-21 91.3
MS.gene05201.t1 AT3G04420 37.086 151 84 5 15 158 4 150 1.80e-21 90.5
MS.gene05201.t1 AT4G28530 38.519 135 64 3 7 122 3 137 3.96e-21 89.7
MS.gene05201.t1 AT1G02220 37.500 160 78 7 15 164 4 151 9.81e-21 89.7
MS.gene05201.t1 AT3G44350 38.129 139 75 4 14 143 5 141 2.22e-20 84.7
MS.gene05201.t1 AT2G18060 49.383 81 37 3 89 167 2 80 1.44e-18 82.4
MS.gene05201.t1 AT3G55210 33.714 175 84 8 14 165 11 176 9.26e-18 80.1
MS.gene05201.t1 AT3G10490 46.512 86 40 2 85 166 3 86 1.87e-17 80.1
MS.gene05201.t1 AT3G10490 46.512 86 40 2 85 166 3 86 1.87e-17 80.1
MS.gene05201.t1 AT1G01010 34.177 158 81 7 17 158 6 156 4.90e-16 76.6
MS.gene05201.t1 AT2G43000 44.706 85 41 3 76 156 5 87 3.10e-15 71.6
MS.gene05201.t1 AT3G56530 34.177 158 87 7 11 157 49 200 4.43e-15 73.2
MS.gene05201.t1 AT5G14000 54.545 55 25 0 7 61 8 62 2.05e-13 67.8
MS.gene05201.t1 AT5G22290 37.143 105 58 3 90 194 2 98 1.39e-12 65.5
MS.gene05201.t1 AT4G29230 30.460 174 90 9 12 158 45 214 9.23e-12 64.3
MS.gene05201.t1 AT4G29230 30.460 174 90 9 12 158 46 215 9.77e-12 64.3
MS.gene05201.t1 AT4G29230 31.429 175 87 10 12 158 46 215 1.24e-11 63.9
MS.gene05201.t1 AT1G28470 31.707 164 89 10 14 158 77 236 2.61e-11 62.4

Find 49 sgRNAs with CRISPR-Local

Find 71 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCAATCCCATCCTCTTT+TGG 0.230199 6.3:-71501830 MS.gene05201:CDS
CCAAGCAATGACAGCAGTTT+TGG 0.265671 6.3:-71501953 MS.gene05201:CDS
TACTGGAAAGCAACTGGTTT+GGG 0.275750 6.3:-71502305 MS.gene05201:CDS
CTCTTAGATCGGTTCCCATT+TGG 0.336362 6.3:+71502344 None:intergenic
GAGCTACAAACTCTGGTTAC+TGG 0.339051 6.3:-71502322 MS.gene05201:CDS
ATCTTTGCAAGTCTGATCCT+TGG 0.370348 6.3:-71502612 MS.gene05201:CDS
AGAGGATGGGATTGAGGAGG+AGG 0.387672 6.3:+71501835 None:intergenic
TCTTTGCAAGTCTGATCCTT+GGG 0.393386 6.3:-71502611 MS.gene05201:CDS
TCGGTTCCCATTTGGATACT+TGG 0.402648 6.3:+71502352 None:intergenic
TTACTGGAAAGCAACTGGTT+TGG 0.421422 6.3:-71502306 MS.gene05201:CDS
CTTCATCTGTTGGATGAAAA+CGG 0.429980 6.3:+71502707 None:intergenic
GGATGGGATTGAGGAGGAGG+AGG 0.435232 6.3:+71501838 None:intergenic
AAAGAAGCCAAGTATCCAAA+TGG 0.440359 6.3:-71502359 MS.gene05201:CDS
ATGCATGATCCAATCAGTTC+TGG 0.442153 6.3:+71502196 None:intergenic
CCAAAACTGCTGTCATTGCT+TGG 0.451138 6.3:+71501953 None:intergenic
TTCAACTTCAAGTTCAAAAG+TGG 0.453095 6.3:-71501909 MS.gene05201:CDS
TCTGGTTACTGGAAAGCAAC+TGG 0.454286 6.3:-71502311 MS.gene05201:CDS
ACAACAAGTTCTTCATCTGT+TGG 0.464543 6.3:+71502697 None:intergenic
GACTTGCAAAGATCAACTTC+AGG 0.465462 6.3:+71502622 None:intergenic
GACCAAGGGGTTGGAGTGAG+AGG 0.467797 6.3:+71502157 None:intergenic
TCCAAAAGAGGATGGGATTG+AGG 0.467952 6.3:+71501829 None:intergenic
AAGATCAACTTCAGGAATGA+TGG 0.468508 6.3:+71502630 None:intergenic
TTCCTCTCACTCCAACCCCT+TGG 0.471467 6.3:-71502159 MS.gene05201:intron
CTCATAGTTCCAGAACTGAT+TGG 0.479030 6.3:-71502205 MS.gene05201:CDS
GAATGATGGAAGCAGGTAAA+GGG 0.510410 6.3:+71502644 None:intergenic
GGTTGGAGTGAGAGGAAGTG+AGG 0.514880 6.3:+71502165 None:intergenic
TAAGCATTTCCAAAAGAGGA+TGG 0.519212 6.3:+71501821 None:intergenic
AATGGAGAGGAGACAGTGAA+AGG 0.524667 6.3:-71501983 MS.gene05201:CDS
GTATTAAGCATTTCCAAAAG+AGG 0.532359 6.3:+71501817 None:intergenic
GGAATGATGGAAGCAGGTAA+AGG 0.533367 6.3:+71502643 None:intergenic
AAGCATTTCCAAAAGAGGAT+GGG 0.533996 6.3:+71501822 None:intergenic
ACTTCAGGAATGATGGAAGC+AGG 0.542259 6.3:+71502637 None:intergenic
AGTTTGTAGCTCTCTTAGAT+CGG 0.542330 6.3:+71502333 None:intergenic
TCTAAGAGAGCTACAAACTC+TGG 0.543930 6.3:-71502329 MS.gene05201:CDS
AAGAAGCCAAGTATCCAAAT+GGG 0.544681 6.3:-71502358 MS.gene05201:CDS
TGTTCAATACTTGAAGCGTA+AGG 0.550952 6.3:-71502677 MS.gene05201:CDS
AGAAAGACAGACCAAGGGGT+TGG 0.554284 6.3:+71502148 None:intergenic
TCTGATCCTTGGGATTTACC+TGG 0.570788 6.3:-71502601 MS.gene05201:intron
TGTGTCGCATATTTCTGAAG+AGG 0.578122 6.3:-71502021 MS.gene05201:CDS
CAATCAGTTCTGGAACTATG+AGG 0.582807 6.3:+71502206 None:intergenic
CGCATATTTCTGAAGAGGAG+AGG 0.611502 6.3:-71502016 MS.gene05201:CDS
TACATACCAGGTAAATCCCA+AGG 0.614952 6.3:+71502595 None:intergenic
GTTGGATGAAAACGGAAACC+TGG 0.621096 6.3:+71502715 None:intergenic
GGTGAAGTGAGATTGCCACC+AGG 0.631641 6.3:-71502733 MS.gene05201:CDS
TCAGTTCTGGAACTATGAGG+TGG 0.658933 6.3:+71502209 None:intergenic
AAAAGAGGATGGGATTGAGG+AGG 0.660083 6.3:+71501832 None:intergenic
TAGGTGATATGGAACAAGAG+AGG 0.664397 6.3:-71502397 MS.gene05201:CDS
ATATTTCTGAAGAGGAGAGG+TGG 0.674268 6.3:-71502013 MS.gene05201:CDS
GGATGAAAACGGAAACCTGG+TGG 0.761895 6.3:+71502718 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAAGAAAAGAAAAGAAA+AGG + chr6.3:71502011-71502030 None:intergenic 20.0%
!!! AGTTTAGTCTTGTAATTTAA+AGG - chr6.3:71502480-71502499 MS.gene05201:intron 20.0%
!! AAGATGAATTTTGTGAAGAA+TGG - chr6.3:71501826-71501845 MS.gene05201:CDS 25.0%
! GGTTTTGCAGAATGAAAATT+GGG - chr6.3:71502533-71502552 MS.gene05201:intron 30.0%
! TTCAACTTCAAGTTCAAAAG+TGG - chr6.3:71502671-71502690 MS.gene05201:CDS 30.0%
!! GGTTGTTTTCTATGATTTCT+TGG - chr6.3:71502692-71502711 MS.gene05201:CDS 30.0%
!! TGTTGTTCTTTTAGGTGATA+TGG - chr6.3:71502172-71502191 MS.gene05201:CDS 30.0%
!!! AAAACTCTTGTTTTCTACAG+AGG - chr6.3:71502344-71502363 MS.gene05201:CDS 30.0%
AAAGAAGCCAAGTATCCAAA+TGG - chr6.3:71502221-71502240 MS.gene05201:CDS 35.0%
AAGAAGCCAAGTATCCAAAT+GGG - chr6.3:71502222-71502241 MS.gene05201:CDS 35.0%
AAGATCAACTTCAGGAATGA+TGG + chr6.3:71501953-71501972 None:intergenic 35.0%
AAGCATTTCCAAAAGAGGAT+GGG + chr6.3:71502761-71502780 None:intergenic 35.0%
ACAACAAGTTCTTCATCTGT+TGG + chr6.3:71501886-71501905 None:intergenic 35.0%
AGTTTGTAGCTCTCTTAGAT+CGG + chr6.3:71502250-71502269 None:intergenic 35.0%
ATTCAAAGAAAGACAGACCA+AGG + chr6.3:71502441-71502460 None:intergenic 35.0%
CTTCATCTGTTGGATGAAAA+CGG + chr6.3:71501876-71501895 None:intergenic 35.0%
TAAGCATTTCCAAAAGAGGA+TGG + chr6.3:71502762-71502781 None:intergenic 35.0%
TGTTCAATACTTGAAGCGTA+AGG - chr6.3:71501903-71501922 MS.gene05201:CDS 35.0%
TTCAAAGAAAGACAGACCAA+GGG + chr6.3:71502440-71502459 None:intergenic 35.0%
! GAAAAGAAAAGGTACATACC+AGG + chr6.3:71502000-71502019 None:intergenic 35.0%
! GGGTTTTGCAGAATGAAAAT+TGG - chr6.3:71502532-71502551 MS.gene05201:intron 35.0%
!! GTAGTAGAAGTATCATGTTC+CGG + chr6.3:71502115-71502134 None:intergenic 35.0%
!! TGAGTGTGTGTTGTTCTTTT+AGG - chr6.3:71502164-71502183 MS.gene05201:CDS 35.0%
ATCTTTGCAAGTCTGATCCT+TGG - chr6.3:71501968-71501987 MS.gene05201:CDS 40.0%
ATGCATGATCCAATCAGTTC+TGG + chr6.3:71502387-71502406 None:intergenic 40.0%
CTACTGCAAACAATGTCATG+TGG - chr6.3:71502134-71502153 MS.gene05201:intron 40.0%
CTCATAGTTCCAGAACTGAT+TGG - chr6.3:71502375-71502394 MS.gene05201:CDS 40.0%
GACTTGCAAAGATCAACTTC+AGG + chr6.3:71501961-71501980 None:intergenic 40.0%
TACATACCAGGTAAATCCCA+AGG + chr6.3:71501988-71502007 None:intergenic 40.0%
TAGGTGATATGGAACAAGAG+AGG - chr6.3:71502183-71502202 MS.gene05201:CDS 40.0%
TCAAAGAAAGACAGACCAAG+GGG + chr6.3:71502439-71502458 None:intergenic 40.0%
TCTAAGAGAGCTACAAACTC+TGG - chr6.3:71502251-71502270 MS.gene05201:CDS 40.0%
TCTTTGCAAGTCTGATCCTT+GGG - chr6.3:71501969-71501988 MS.gene05201:CDS 40.0%
TTACTGGAAAGCAACTGGTT+TGG - chr6.3:71502274-71502293 MS.gene05201:CDS 40.0%
! ATATTTCTGAAGAGGAGAGG+TGG - chr6.3:71502567-71502586 MS.gene05201:intron 40.0%
! GAATGATGGAAGCAGGTAAA+GGG + chr6.3:71501939-71501958 None:intergenic 40.0%
! TACTGGAAAGCAACTGGTTT+GGG - chr6.3:71502275-71502294 MS.gene05201:CDS 40.0%
! TGTGTCGCATATTTCTGAAG+AGG - chr6.3:71502559-71502578 MS.gene05201:intron 40.0%
!! CAATCAGTTCTGGAACTATG+AGG + chr6.3:71502377-71502396 None:intergenic 40.0%
AAAAGAGGATGGGATTGAGG+AGG + chr6.3:71502751-71502770 None:intergenic 45.0%
AATGGAGAGGAGACAGTGAA+AGG - chr6.3:71502597-71502616 MS.gene05201:intron 45.0%
ACACTGACACATTCAGACAC+CGG - chr6.3:71502093-71502112 MS.gene05201:intron 45.0%
CCAAAACTGCTGTCATTGCT+TGG + chr6.3:71502630-71502649 None:intergenic 45.0%
GAGCTACAAACTCTGGTTAC+TGG - chr6.3:71502258-71502277 MS.gene05201:CDS 45.0%
GTTGGATGAAAACGGAAACC+TGG + chr6.3:71501868-71501887 None:intergenic 45.0%
TCCAAAAGAGGATGGGATTG+AGG + chr6.3:71502754-71502773 None:intergenic 45.0%
TCGGTTCCCATTTGGATACT+TGG + chr6.3:71502231-71502250 None:intergenic 45.0%
TCTGATCCTTGGGATTTACC+TGG - chr6.3:71501979-71501998 MS.gene05201:CDS 45.0%
TCTGGTTACTGGAAAGCAAC+TGG - chr6.3:71502269-71502288 MS.gene05201:CDS 45.0%
TGAAGCACAGACACAGACAT+CGG - chr6.3:71502059-71502078 MS.gene05201:intron 45.0%
! ACTTCAGGAATGATGGAAGC+AGG + chr6.3:71501946-71501965 None:intergenic 45.0%
! AGGAGAGGTGGTGCTAAAAA+TGG - chr6.3:71502579-71502598 MS.gene05201:intron 45.0%
! AGGTGGTGCTAAAAATGGAG+AGG - chr6.3:71502584-71502603 MS.gene05201:intron 45.0%
! CCAAGCAATGACAGCAGTTT+TGG - chr6.3:71502627-71502646 MS.gene05201:CDS 45.0%
! CGCATATTTCTGAAGAGGAG+AGG - chr6.3:71502564-71502583 MS.gene05201:intron 45.0%
! CTCTTAGATCGGTTCCCATT+TGG + chr6.3:71502239-71502258 None:intergenic 45.0%
! GGAATGATGGAAGCAGGTAA+AGG + chr6.3:71501940-71501959 None:intergenic 45.0%
! TCCTCAATCCCATCCTCTTT+TGG - chr6.3:71502750-71502769 MS.gene05201:CDS 45.0%
!! CAATGACAGCAGTTTTGGTG+AGG - chr6.3:71502632-71502651 MS.gene05201:CDS 45.0%
!! TCAGTTCTGGAACTATGAGG+TGG + chr6.3:71502374-71502393 None:intergenic 45.0%
!! AATATTAATATGAATAAATT+GGG - chr6.3:71502512-71502531 MS.gene05201:intron 5.0%
!! TAATATTAATATGAATAAAT+TGG - chr6.3:71502511-71502530 MS.gene05201:intron 5.0%
AGAAAGACAGACCAAGGGGT+TGG + chr6.3:71502435-71502454 None:intergenic 50.0%
CACAGACATCGGACACAACA+TGG - chr6.3:71502070-71502089 MS.gene05201:intron 50.0%
GGATGAAAACGGAAACCTGG+TGG + chr6.3:71501865-71501884 None:intergenic 50.0%
AGAGGATGGGATTGAGGAGG+AGG + chr6.3:71502748-71502767 None:intergenic 55.0%
GGTGAAGTGAGATTGCCACC+AGG - chr6.3:71501847-71501866 MS.gene05201:CDS 55.0%
GGTTGGAGTGAGAGGAAGTG+AGG + chr6.3:71502418-71502437 None:intergenic 55.0%
TTCCTCTCACTCCAACCCCT+TGG - chr6.3:71502421-71502440 MS.gene05201:intron 55.0%
GACCAAGGGGTTGGAGTGAG+AGG + chr6.3:71502426-71502445 None:intergenic 60.0%
GGATGGGATTGAGGAGGAGG+AGG + chr6.3:71502745-71502764 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 71501820 71502782 71501820 ID=MS.gene05201
chr6.3 mRNA 71501820 71502782 71501820 ID=MS.gene05201.t1;Parent=MS.gene05201
chr6.3 exon 71502602 71502782 71502602 ID=MS.gene05201.t1.exon1;Parent=MS.gene05201.t1
chr6.3 CDS 71502602 71502782 71502602 ID=cds.MS.gene05201.t1;Parent=MS.gene05201.t1
chr6.3 exon 71502160 71502416 71502160 ID=MS.gene05201.t1.exon2;Parent=MS.gene05201.t1
chr6.3 CDS 71502160 71502416 71502160 ID=cds.MS.gene05201.t1;Parent=MS.gene05201.t1
chr6.3 exon 71501820 71502059 71501820 ID=MS.gene05201.t1.exon3;Parent=MS.gene05201.t1
chr6.3 CDS 71501820 71502059 71501820 ID=cds.MS.gene05201.t1;Parent=MS.gene05201.t1
Gene Sequence

>MS.gene05201

ATGGAGAAGATGAATTTTGTGAAGAATGGTGAAGTGAGATTGCCACCAGGTTTCCGTTTTCATCCAACAGATGAAGAACTTGTTGTTCAATACTTGAAGCGTAAGGTCTTCTCTTTCCCTTTACCTGCTTCCATCATTCCTGAAGTTGATCTTTGCAAGTCTGATCCTTGGGATTTACCTGGTATGTACCTTTTCTTTTCTTTTCTTTTCTTTTTCGTTCGTTTATAATCATAACTTAATGAAGCACAGACACAGACATCGGACACAACATGGACACTGACACATTCAGACACCGGAACATGATACTTCTACTACTACTGCAAACAATGTCATGTGGATTGATTTGAGTGTGTGTTGTTCTTTTAGGTGATATGGAACAAGAGAGGTACTTTTTCAGTACAAAAGAAGCCAAGTATCCAAATGGGAACCGATCTAAGAGAGCTACAAACTCTGGTTACTGGAAAGCAACTGGTTTGGGCAAACAAATCATGAATTCAAAGACTCATGAAGTTGTTCGCATGAAGAAAACTCTTGTTTTCTACAGAGGCAAACCACCTCATAGTTCCAGAACTGATTGGATCATGCATGAATATCGCCTCACTTCCTCTCACTCCAACCCCTTGGTCTGTCTTTCTTTGAATATGTACATTTGTAATTAAGAGTTTAGTCTTGTAATTTAAAGGTGTTGAATTAATATTAATATGAATAAATTGGGTTTTGCAGAATGAAAATTGGGTTCTGTGTCGCATATTTCTGAAGAGGAGAGGTGGTGCTAAAAATGGAGAGGAGACAGTGAAAGGAGTGAAGCCAAGCAATGACAGCAGTTTTGGTGAGGTAAAGAAGAACTCAGCTTCAACTTCAAGTTCAAAAGTGGTTGTTTTCTATGATTTCTTGGCAGAGAAGAAGAAAAATTCTGATGCATCCTCCTCCTCCTCAATCCCATCCTCTTTTGGAAATGCTTAA
Protein sequence

>MS.gene05201.t1

MEKMNFVKNGEVRLPPGFRFHPTDEELVVQYLKRKVFSFPLPASIIPEVDLCKSDPWDLPGDMEQERYFFSTKEAKYPNGNRSKRATNSGYWKATGLGKQIMNSKTHEVVRMKKTLVFYRGKPPHSSRTDWIMHEYRLTSSHSNPLNENWVLCRIFLKRRGGAKNGEETVKGVKPSNDSSFGEVKKNSASTSSSKVVVFYDFLAEKKKNSDASSSSSIPSSFGNA