AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051999

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051999.t1 MTR_2g099125 90.764 314 25 2 1 314 78 387 0.0 584
MS.gene051999.t1 MTR_2g027210 56.627 83 10 1 216 298 17 73 9.58e-24 93.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051999.t1 AT2G43465 53.628 317 138 3 1 314 78 388 2.02e-118 346
MS.gene051999.t1 AT2G43465 48.374 246 118 3 1 243 78 317 5.05e-72 225
MS.gene051999.t1 AT2G43465 48.341 211 102 2 1 210 78 282 4.39e-62 199
MS.gene051999.t1 AT2G43465 48.341 211 102 2 1 210 78 282 9.20e-62 199
MS.gene051999.t1 AT3G03320 54.545 165 72 1 19 183 74 235 6.96e-55 179
MS.gene051999.t1 AT2G43465 43.885 139 71 2 1 138 78 210 3.22e-30 115
MS.gene051999.t1 AT2G43465 43.885 139 71 2 1 138 78 210 3.22e-30 115

Find 77 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGAGTTGTCTTTGAAATA+AGG 0.212708 2.2:+3734106 MS.gene051999:CDS
GTCTTTGGTGTTTGAAGTTC+AGG 0.241070 2.2:+3732166 MS.gene051999:CDS
TAGGAGCAGCAGTGGTTATT+GGG 0.260041 2.2:+3733360 MS.gene051999:CDS
GGTTCAACCATACACTTCTT+TGG 0.294268 2.2:+3732646 MS.gene051999:CDS
GATTCTCTTAAATAAGTCTT+TGG 0.315771 2.2:+3732151 MS.gene051999:CDS
TTCCTTTGAACTCCATGTTC+AGG 0.335428 2.2:+3731562 MS.gene051999:CDS
GGTTATTGGGGTTCTCTTGT+TGG 0.337664 2.2:+3733373 MS.gene051999:CDS
TCTTCAACGCTTTCAATTCC+AGG 0.346374 2.2:-3732329 None:intergenic
GTAGGAGCAGCAGTGGTTAT+TGG 0.360077 2.2:+3733359 MS.gene051999:CDS
TTGTGTTTCTTCAGCATAGA+AGG 0.373463 2.2:-3731403 None:intergenic
CTTGGCGGTGGAAGTGCATT+AGG 0.373793 2.2:-3733045 None:intergenic
TGGAGTTGTCTTTGAAATAA+GGG 0.373802 2.2:+3734107 MS.gene051999:CDS
ACTTAATAGCACACTGTTGT+TGG 0.375610 2.2:+3734058 MS.gene051999:CDS
ATTAAACCTGGTGTATTTGC+CGG 0.376759 2.2:-3731879 None:intergenic
TTGGGTTCTAGGATTGAATC+AGG 0.378451 2.2:+3732122 MS.gene051999:intron
GCTGCTCCTACAGGCATGCT+TGG 0.385415 2.2:-3733347 None:intergenic
TGGGGTTCTCTTGTTGGTAA+TGG 0.386553 2.2:+3733379 MS.gene051999:CDS
AGTCTTGGAGAAGTTCTTCC+TGG 0.389906 2.2:+3732311 MS.gene051999:CDS
GACTGATGGAGCTCGGGCAT+TGG 0.395909 2.2:+3733324 MS.gene051999:CDS
ATAAGGGTTGTTGATGGATA+TGG 0.404606 2.2:+3734123 MS.gene051999:CDS
GAGGGTGTTCAAGGTCTTCT+CGG 0.416598 2.2:+3732997 MS.gene051999:CDS
AAAGAAGTGTATGGTTGAAC+CGG 0.417782 2.2:-3732644 None:intergenic
GAACTAGTGTTTCCATCCCT+TGG 0.423110 2.2:-3734304 None:intergenic
GAGTGACCATCTTGCATGTA+TGG 0.434744 2.2:-3734282 None:intergenic
TCCTTCATTCTTTGACATGT+TGG 0.437548 2.2:+3732280 MS.gene051999:CDS
TTTGAAATAAGGGTTGTTGA+TGG 0.441020 2.2:+3734117 MS.gene051999:CDS
TGCCTTGACTGATGGAGCTC+GGG 0.460459 2.2:+3733318 MS.gene051999:CDS
CTAGGATTGAATCAGGAAAT+CGG 0.460510 2.2:+3732129 MS.gene051999:intron
TTGAGCTATGAGGGTGTTCA+AGG 0.466558 2.2:+3732988 MS.gene051999:CDS
TTTCTTACACTTAGATTGCA+TGG 0.466713 2.2:-3733096 None:intergenic
TATCTAGGGATTGAGCTATG+AGG 0.478164 2.2:+3732978 MS.gene051999:intron
CTCGGTCTAATGCATACCAC+TGG 0.479936 2.2:+3733015 MS.gene051999:CDS
TGATATACATACCTTTAAGC+TGG 0.481103 2.2:-3731598 None:intergenic
TGCTGAAGAAACACAATGAA+TGG 0.481240 2.2:+3731410 MS.gene051999:CDS
CAGGAAAATGCCTTGACTGA+TGG 0.486874 2.2:+3733310 MS.gene051999:intron
GGTGCACGTTGGACAGAAGA+TGG 0.496996 2.2:+3734144 MS.gene051999:CDS
GCACAAATTGATCGTGGAGA+AGG 0.498948 2.2:+3731432 MS.gene051999:CDS
ATAACCACTGCTGCTCCTAC+AGG 0.499741 2.2:-3733356 None:intergenic
ATCTAGGGATTGAGCTATGA+GGG 0.502610 2.2:+3732979 MS.gene051999:intron
TCATCAGTATATAGGGAGTA+AGG 0.506482 2.2:+3732252 MS.gene051999:intron
ATGCCTTGACTGATGGAGCT+CGG 0.511754 2.2:+3733317 MS.gene051999:CDS
TTCTTACACTTAGATTGCAT+GGG 0.515980 2.2:-3733095 None:intergenic
AAGCTAGCCAAAGAAGTGTA+TGG 0.520889 2.2:-3732653 None:intergenic
AAACACTGTTTCAAAACTCC+CGG 0.524831 2.2:+3732625 MS.gene051999:CDS
CACAAATTGATCGTGGAGAA+GGG 0.526796 2.2:+3731433 MS.gene051999:CDS
TCCAACATGTCAAAGAATGA+AGG 0.529068 2.2:-3732281 None:intergenic
GAGGCTAACAGAGTTGATCT+TGG 0.534251 2.2:-3733063 None:intergenic
ATTGCATGGGATATTAAATG+AGG 0.540584 2.2:-3733082 None:intergenic
AACAGAGTTGATCTTGGCGG+TGG 0.543674 2.2:-3733057 None:intergenic
TTGGACAGAAGATGGAAGTA+AGG 0.547858 2.2:+3734152 MS.gene051999:CDS
GAAGAGATGGAACAGACAAA+TGG 0.548453 2.2:+3732593 MS.gene051999:CDS
TTAGAGCCATACATGCAAGA+TGG 0.555449 2.2:+3734276 MS.gene051999:CDS
ATTGAGGGGAGGTGTGCCAC+CGG 0.555898 2.2:+3731860 MS.gene051999:CDS
AGGAGCAGCAGTGGTTATTG+GGG 0.567461 2.2:+3733361 MS.gene051999:CDS
GATATACATACCTTTAAGCT+GGG 0.570687 2.2:-3731597 None:intergenic
GGAATTGAAAGCGTTGAAGA+AGG 0.573171 2.2:+3732332 MS.gene051999:CDS
TTATAGGTGTAAAGATCTAT+CGG 0.577169 2.2:+3732558 MS.gene051999:intron
CATGCAAGATGGTCACTCCA+AGG 0.583381 2.2:+3734287 MS.gene051999:CDS
GCTAACAGAGTTGATCTTGG+CGG 0.598508 2.2:-3733060 None:intergenic
ATACACACTGTCGCGCCACA+TGG 0.600988 2.2:+3734087 MS.gene051999:CDS
TGCCCGAGCTCCATCAGTCA+AGG 0.602226 2.2:-3733320 None:intergenic
CATGCCTGTAGGAGCAGCAG+TGG 0.609941 2.2:+3733352 MS.gene051999:CDS
AAGAAGTGTATGGTTGAACC+GGG 0.618261 2.2:-3732643 None:intergenic
CATTGGCCAAGCATGCCTGT+AGG 0.630043 2.2:+3733341 MS.gene051999:CDS
AAACCTGGTGTATTTGCCGG+TGG 0.634489 2.2:-3731876 None:intergenic
ATGCAAGATGGTCACTCCAA+GGG 0.635028 2.2:+3734288 MS.gene051999:CDS
AAGATGGTCACTCCAAGGGA+TGG 0.635877 2.2:+3734292 MS.gene051999:CDS
GTGCCACCGGCAAATACACC+AGG 0.647458 2.2:+3731873 MS.gene051999:CDS
ATGTTGGAGACAGAAAGTCT+TGG 0.647936 2.2:+3732296 MS.gene051999:CDS
CTCCTGAACATGGAGTTCAA+AGG 0.653843 2.2:-3731564 None:intergenic
TGAATGGCACAAATTGATCG+TGG 0.661709 2.2:+3731426 MS.gene051999:CDS
TCGGTCTAATGCATACCACT+GGG 0.667886 2.2:+3733016 MS.gene051999:CDS
TGCATTAGGAACTGTCCCAG+TGG 0.699235 2.2:-3733031 None:intergenic
TTGATGGATATGGTGCACGT+TGG 0.702564 2.2:+3734133 MS.gene051999:CDS
TAGGTGTAAAGATCTATCGG+AGG 0.707792 2.2:+3732561 MS.gene051999:intron
ATTTCAAAGACAACTCCATG+TGG 0.724759 2.2:-3734102 None:intergenic
TCAGTATATAGGGAGTAAGG+CGG 0.729351 2.2:+3732255 MS.gene051999:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCTTTTCTTTTTTTAATTT+GGG + chr2.2:3732104-3732123 MS.gene051999:intron 10.0%
!!! TTTCTTTTCTTTTTTTAATT+TGG + chr2.2:3732103-3732122 MS.gene051999:intron 10.0%
!! ATATTGATACATATTCTTTA+AGG + chr2.2:3734214-3734233 MS.gene051999:intron 15.0%
!! TAAAATTAGTATATTAAACC+TGG - chr2.2:3731894-3731913 None:intergenic 15.0%
!!! TTTTAGATTCTAATAAAAAC+AGG + chr2.2:3734013-3734032 MS.gene051999:intron 15.0%
!! AAAAGAACATTAAAAAACAC+AGG - chr2.2:3733996-3734015 None:intergenic 20.0%
!! AAAGAAAAGAAAATCAAAAC+AGG - chr2.2:3732095-3732114 None:intergenic 20.0%
!! AACTATAATTGAATAGTTGT+TGG + chr2.2:3732703-3732722 MS.gene051999:intron 20.0%
!! ACATATCATAATCAACAATT+AGG - chr2.2:3732789-3732808 None:intergenic 20.0%
!! AGAATGAAATTATAGTTAGA+AGG - chr2.2:3731797-3731816 None:intergenic 20.0%
!! ATACTTTATGATCAATATTC+AGG + chr2.2:3733291-3733310 MS.gene051999:intron 20.0%
!! ATTTCTTAATAATTGACAGT+TGG + chr2.2:3732021-3732040 MS.gene051999:intron 20.0%
!! GAATAGATAATTATTCAACT+CGG - chr2.2:3731694-3731713 None:intergenic 20.0%
!! GTTTATTATGAGATATATGT+TGG + chr2.2:3732043-3732062 MS.gene051999:intron 20.0%
!! TTAAGAATAAGTACTCAATT+AGG + chr2.2:3733816-3733835 MS.gene051999:intron 20.0%
!! TTGTTGGATTTAAAAATGAT+TGG + chr2.2:3732719-3732738 MS.gene051999:intron 20.0%
!!! AAGAAAATGTCTGTTTTTTT+GGG + chr2.2:3733113-3733132 MS.gene051999:intron 20.0%
!!! AATTTGTTTTTCAGTTCATT+GGG + chr2.2:3734250-3734269 MS.gene051999:intron 20.0%
!!! ACAATCTAAAATCTTCTATA+TGG - chr2.2:3733506-3733525 None:intergenic 20.0%
!!! ATTTTAAGATAACACCAAAT+TGG + chr2.2:3731914-3731933 MS.gene051999:intron 20.0%
!!! TAAGAAAATGTCTGTTTTTT+TGG + chr2.2:3733112-3733131 MS.gene051999:intron 20.0%
! AAAATCCAATTAAGTCCATA+TGG - chr2.2:3731998-3732017 None:intergenic 25.0%
! AACTGAAAAACAAATTCGTA+GGG - chr2.2:3734246-3734265 None:intergenic 25.0%
! AAGAAAAACCAAGATAACAA+AGG - chr2.2:3733468-3733487 None:intergenic 25.0%
! AATCCAACAAAAAAAGAAAG+AGG - chr2.2:3733169-3733188 None:intergenic 25.0%
! ACAAATGATAATAACCTCTT+TGG + chr2.2:3731759-3731778 MS.gene051999:intron 25.0%
! ATGCATTTGTATCTTTGATT+AGG + chr2.2:3731482-3731501 MS.gene051999:intron 25.0%
! ATTGTATTCTTGCATTCAAA+TGG + chr2.2:3732448-3732467 MS.gene051999:intron 25.0%
! CATATCACTTATCTATAAAC+AGG - chr2.2:3732368-3732387 None:intergenic 25.0%
! CTGTTTATAGATAAGTGATA+TGG + chr2.2:3732366-3732385 MS.gene051999:intron 25.0%
! GATTAAGACTAAATCCAATT+TGG - chr2.2:3731931-3731950 None:intergenic 25.0%
! GATTCTCTTAAATAAGTCTT+TGG + chr2.2:3732151-3732170 MS.gene051999:CDS 25.0%
! GTATATTTATGAAGAACCTT+AGG + chr2.2:3733196-3733215 MS.gene051999:intron 25.0%
! TCTTACTTCATCAGTATATA+GGG + chr2.2:3732245-3732264 MS.gene051999:intron 25.0%
! TTATAGGTGTAAAGATCTAT+CGG + chr2.2:3732558-3732577 MS.gene051999:intron 25.0%
! TTATCTATAAACAGGACATT+CGG - chr2.2:3732360-3732379 None:intergenic 25.0%
! TTGAGTACTTATTCTTAACT+TGG - chr2.2:3733814-3733833 None:intergenic 25.0%
!! AAATTTTGTAGAAAACAGGA+TGG + chr2.2:3733700-3733719 MS.gene051999:intron 25.0%
!! ATCCTGTTTTCTACAAAATT+TGG - chr2.2:3733701-3733720 None:intergenic 25.0%
!! ATTTATTCAGTCTCTGTTTT+AGG - chr2.2:3731724-3731743 None:intergenic 25.0%
!! GAATCTTTTAGATACATCTT+CGG + chr2.2:3733423-3733442 MS.gene051999:intron 25.0%
!! TGTAAAATCTAGAATTGACT+TGG - chr2.2:3732508-3732527 None:intergenic 25.0%
!! TTCCAAATTTTGTAGAAAAC+AGG + chr2.2:3733696-3733715 MS.gene051999:intron 25.0%
!! TTCTGAATCATTTTGTAGTA+CGG + chr2.2:3731333-3731352 MS.gene051999:CDS 25.0%
!! TTTATTCAGTCTCTGTTTTA+GGG - chr2.2:3731723-3731742 None:intergenic 25.0%
!!! AGAAAATGTCTGTTTTTTTG+GGG + chr2.2:3733114-3733133 MS.gene051999:intron 25.0%
!!! ATGTTTCTTTTTGTTTCAAC+AGG + chr2.2:3731526-3731545 MS.gene051999:intron 25.0%
!!! CTTTTTTTAATTTGGGTTCT+AGG + chr2.2:3732111-3732130 MS.gene051999:intron 25.0%
!!! GAATTTGTTTTTCAGTTCAT+TGG + chr2.2:3734249-3734268 MS.gene051999:intron 25.0%
!!! GTCAAAGATGTTTTTAGTTT+GGG + chr2.2:3733861-3733880 MS.gene051999:intron 25.0%
!!! GTGCTTTTTTTCATTACATA+AGG - chr2.2:3733558-3733577 None:intergenic 25.0%
!!! TATCTTGGTTTTTCTTCAAT+CGG + chr2.2:3733472-3733491 MS.gene051999:intron 25.0%
!!! TGTCAAAGATGTTTTTAGTT+TGG + chr2.2:3733860-3733879 MS.gene051999:intron 25.0%
!!! TTACCTCTTTCTTTTTTTGT+TGG + chr2.2:3733163-3733182 MS.gene051999:intron 25.0%
AACAAATAACGATTCATAGC+AGG - chr2.2:3732423-3732442 None:intergenic 30.0%
ATCATTACTCAAATAGACTG+TGG - chr2.2:3731626-3731645 None:intergenic 30.0%
ATGAGATCAACTTATTAGAG+AGG - chr2.2:3733955-3733974 None:intergenic 30.0%
ATTGCATGGGATATTAAATG+AGG - chr2.2:3733085-3733104 None:intergenic 30.0%
ATTTGTATCTTTGATTAGGC+TGG + chr2.2:3731486-3731505 MS.gene051999:intron 30.0%
CTCTTACTTCATCAGTATAT+AGG + chr2.2:3732244-3732263 MS.gene051999:intron 30.0%
GAACTGAAAAACAAATTCGT+AGG - chr2.2:3734247-3734266 None:intergenic 30.0%
GATATACATACCTTTAAGCT+GGG - chr2.2:3731600-3731619 None:intergenic 30.0%
GTATACTAATAATGTGTCAC+CGG + chr2.2:3733918-3733937 MS.gene051999:intron 30.0%
GTGACACATTATTAGTATAC+TGG - chr2.2:3733918-3733937 None:intergenic 30.0%
TAACACTTGCATGACATTAT+AGG + chr2.2:3732542-3732561 MS.gene051999:intron 30.0%
TATAACAGCAGTGATATTTG+TGG + chr2.2:3733613-3733632 MS.gene051999:intron 30.0%
TGAATGCAAGAATACAATGT+CGG - chr2.2:3732446-3732465 None:intergenic 30.0%
TGAGATCAACTTATTAGAGA+GGG - chr2.2:3733954-3733973 None:intergenic 30.0%
TGATATACATACCTTTAAGC+TGG - chr2.2:3731601-3731620 None:intergenic 30.0%
TGGAATTTAATGACATCAGT+AGG - chr2.2:3733681-3733700 None:intergenic 30.0%
TTCTTACACTTAGATTGCAT+GGG - chr2.2:3733098-3733117 None:intergenic 30.0%
TTTCTTACACTTAGATTGCA+TGG - chr2.2:3733099-3733118 None:intergenic 30.0%
! CAATTCTACCTTTGTTATCT+TGG + chr2.2:3733457-3733476 MS.gene051999:intron 30.0%
! TCTGAATCATTTTGTAGTAC+GGG + chr2.2:3731334-3731353 MS.gene051999:CDS 30.0%
! TTTGAAATAAGGGTTGTTGA+TGG + chr2.2:3734117-3734136 MS.gene051999:CDS 30.0%
!! ATGGAGTTGTCTTTGAAATA+AGG + chr2.2:3734106-3734125 MS.gene051999:CDS 30.0%
!! TGGAGTTGTCTTTGAAATAA+GGG + chr2.2:3734107-3734126 MS.gene051999:CDS 30.0%
AAACACTGTTTCAAAACTCC+CGG + chr2.2:3732625-3732644 MS.gene051999:CDS 35.0%
AAGAGGTAAAAGCGACTAAA+AGG - chr2.2:3733152-3733171 None:intergenic 35.0%
ACTTAATAGCACACTGTTGT+TGG + chr2.2:3734058-3734077 MS.gene051999:CDS 35.0%
AGATGGCCTAAAAACAATTG+AGG + chr2.2:3731844-3731863 MS.gene051999:intron 35.0%
AGCAGGTATGTAGTTTATCT+AGG - chr2.2:3732406-3732425 None:intergenic 35.0%
ATGGCCTAAAAACAATTGAG+GGG + chr2.2:3731846-3731865 MS.gene051999:CDS 35.0%
ATTAAACCTGGTGTATTTGC+CGG - chr2.2:3731882-3731901 None:intergenic 35.0%
ATTTCAAAGACAACTCCATG+TGG - chr2.2:3734105-3734124 None:intergenic 35.0%
CCTTTAAGCTGGGTAAAAAA+AGG - chr2.2:3731590-3731609 None:intergenic 35.0%
CTAGGATTGAATCAGGAAAT+CGG + chr2.2:3732129-3732148 MS.gene051999:intron 35.0%
CTTAGAGTCTCAATTCAATG+TGG - chr2.2:3733235-3733254 None:intergenic 35.0%
GATGGCCTAAAAACAATTGA+GGG + chr2.2:3731845-3731864 MS.gene051999:intron 35.0%
TAAAAAAAGGCTCCTGAACA+TGG - chr2.2:3731577-3731596 None:intergenic 35.0%
TCATCAGTATATAGGGAGTA+AGG + chr2.2:3732252-3732271 MS.gene051999:intron 35.0%
TCCAACATGTCAAAGAATGA+AGG - chr2.2:3732284-3732303 None:intergenic 35.0%
TCCTTCATTCTTTGACATGT+TGG + chr2.2:3732280-3732299 MS.gene051999:CDS 35.0%
TGCTGAAGAAACACAATGAA+TGG + chr2.2:3731410-3731429 MS.gene051999:CDS 35.0%
TGTGTTTAAGCATGCAGAAA+AGG + chr2.2:3732806-3732825 MS.gene051999:intron 35.0%
TTGCTTCCTTCAGAATATAC+CGG + chr2.2:3731970-3731989 MS.gene051999:intron 35.0%
TTGTGTTTCTTCAGCATAGA+AGG - chr2.2:3731406-3731425 None:intergenic 35.0%
TTGTTTCATGTGACTTCGTA+TGG + chr2.2:3732878-3732897 MS.gene051999:intron 35.0%
! AAAGAAGTGTATGGTTGAAC+CGG - chr2.2:3732647-3732666 None:intergenic 35.0%
! ATAAGGGTTGTTGATGGATA+TGG + chr2.2:3734123-3734142 MS.gene051999:CDS 35.0%
! ATGTCATGCAAGTGTTACTA+CGG - chr2.2:3732539-3732558 None:intergenic 35.0%
!! ATCTAGAATTGACTTGGACA+TGG - chr2.2:3732502-3732521 None:intergenic 35.0%
!! TGCTGTCTTGCTTTTATCTA+GGG + chr2.2:3732964-3732983 MS.gene051999:intron 35.0%
!! TTGGCTAGCTTATTATCTGT+GGG + chr2.2:3732665-3732684 MS.gene051999:intron 35.0%
!! TTTGGCTAGCTTATTATCTG+TGG + chr2.2:3732664-3732683 MS.gene051999:intron 35.0%
!!! CCTTTTTTTACCCAGCTTAA+AGG + chr2.2:3731587-3731606 MS.gene051999:CDS 35.0%
ATATTGCGGAGTCATTACGA+AGG + chr2.2:3733644-3733663 MS.gene051999:intron 40.0%
ATCTAGGGATTGAGCTATGA+GGG + chr2.2:3732979-3732998 MS.gene051999:intron 40.0%
ATGATGTTATTGCCTGCAGA+TGG + chr2.2:3731827-3731846 MS.gene051999:intron 40.0%
ATGTTGGAGACAGAAAGTCT+TGG + chr2.2:3732296-3732315 MS.gene051999:CDS 40.0%
CAATTAAGTCCATATGGAGC+CGG - chr2.2:3731992-3732011 None:intergenic 40.0%
CACAAATTGATCGTGGAGAA+GGG + chr2.2:3731433-3731452 MS.gene051999:CDS 40.0%
GAAGAGATGGAACAGACAAA+TGG + chr2.2:3732593-3732612 MS.gene051999:CDS 40.0%
GGTTCAACCATACACTTCTT+TGG + chr2.2:3732646-3732665 MS.gene051999:CDS 40.0%
TAGGTGTAAAGATCTATCGG+AGG + chr2.2:3732561-3732580 MS.gene051999:intron 40.0%
TATCTAGGGATTGAGCTATG+AGG + chr2.2:3732978-3732997 MS.gene051999:intron 40.0%
TCAGTATATAGGGAGTAAGG+CGG + chr2.2:3732255-3732274 MS.gene051999:intron 40.0%
TCTTCAACGCTTTCAATTCC+AGG - chr2.2:3732332-3732351 None:intergenic 40.0%
TGAATGGCACAAATTGATCG+TGG + chr2.2:3731426-3731445 MS.gene051999:CDS 40.0%
TGGAATGACACTAGTTCCTA+AGG - chr2.2:3733215-3733234 None:intergenic 40.0%
TTAGAGCCATACATGCAAGA+TGG + chr2.2:3734276-3734295 MS.gene051999:CDS 40.0%
TTCCTTTGAACTCCATGTTC+AGG + chr2.2:3731562-3731581 MS.gene051999:CDS 40.0%
TTGGACAGAAGATGGAAGTA+AGG + chr2.2:3734152-3734171 MS.gene051999:CDS 40.0%
TTGTGGCGAGATACATATTG+CGG + chr2.2:3733630-3733649 MS.gene051999:intron 40.0%
! AAGAAGTGTATGGTTGAACC+GGG - chr2.2:3732646-3732665 None:intergenic 40.0%
! AAGCTAGCCAAAGAAGTGTA+TGG - chr2.2:3732656-3732675 None:intergenic 40.0%
! GAGGTTTTACACAGAAGAGA+TGG + chr2.2:3732580-3732599 MS.gene051999:CDS 40.0%
! GGTATATTCTGAAGGAAGCA+AGG - chr2.2:3731971-3731990 None:intergenic 40.0%
!! ACCTCCCCTCAATTGTTTTT+AGG - chr2.2:3731853-3731872 None:intergenic 40.0%
!! GGAATTGAAAGCGTTGAAGA+AGG + chr2.2:3732332-3732351 MS.gene051999:CDS 40.0%
!! GTCTTTGGTGTTTGAAGTTC+AGG + chr2.2:3732166-3732185 MS.gene051999:CDS 40.0%
!! GTGCTGTCTTGCTTTTATCT+AGG + chr2.2:3732963-3732982 MS.gene051999:intron 40.0%
!! TTGGGTTCTAGGATTGAATC+AGG + chr2.2:3732122-3732141 MS.gene051999:intron 40.0%
!!! ATTGTTTTTAGGCCATCTGC+AGG - chr2.2:3731842-3731861 None:intergenic 40.0%
AGTCTTGGAGAAGTTCTTCC+TGG + chr2.2:3732311-3732330 MS.gene051999:CDS 45.0%
ATGCAAGATGGTCACTCCAA+GGG + chr2.2:3734288-3734307 MS.gene051999:CDS 45.0%
ATGGAGCCGGTATATTCTGA+AGG - chr2.2:3731979-3731998 None:intergenic 45.0%
CAGGAAAATGCCTTGACTGA+TGG + chr2.2:3733310-3733329 MS.gene051999:intron 45.0%
CGGCTCCATATGGACTTAAT+TGG + chr2.2:3731990-3732009 MS.gene051999:intron 45.0%
CTCCTGAACATGGAGTTCAA+AGG - chr2.2:3731567-3731586 None:intergenic 45.0%
GAGTGACCATCTTGCATGTA+TGG - chr2.2:3734285-3734304 None:intergenic 45.0%
GCACAAATTGATCGTGGAGA+AGG + chr2.2:3731432-3731451 MS.gene051999:CDS 45.0%
GCCTAAAAACAATTGAGGGG+AGG + chr2.2:3731849-3731868 MS.gene051999:CDS 45.0%
GGTTATTGGGGTTCTCTTGT+TGG + chr2.2:3733373-3733392 MS.gene051999:CDS 45.0%
TAGGAGCAGCAGTGGTTATT+GGG + chr2.2:3733360-3733379 MS.gene051999:CDS 45.0%
TCGGTCTAATGCATACCACT+GGG + chr2.2:3733016-3733035 MS.gene051999:CDS 45.0%
! AGGATGGTAGTGATTCTAGC+TGG + chr2.2:3733716-3733735 MS.gene051999:intron 45.0%
! CTTGGACATGGACTGAATGA+CGG - chr2.2:3732490-3732509 None:intergenic 45.0%
! GAGGCTAACAGAGTTGATCT+TGG - chr2.2:3733066-3733085 None:intergenic 45.0%
! GCTAACAGAGTTGATCTTGG+CGG - chr2.2:3733063-3733082 None:intergenic 45.0%
! TCATGCAAGTGTTACTACGG+AGG - chr2.2:3732536-3732555 None:intergenic 45.0%
! TGGGGTTCTCTTGTTGGTAA+TGG + chr2.2:3733379-3733398 MS.gene051999:CDS 45.0%
! TTGATGGATATGGTGCACGT+TGG + chr2.2:3734133-3734152 MS.gene051999:CDS 45.0%
!! CAGAATATACCGGCTCCATA+TGG + chr2.2:3731980-3731999 MS.gene051999:intron 45.0%
!! TTGAGCTATGAGGGTGTTCA+AGG + chr2.2:3732988-3733007 MS.gene051999:CDS 45.0%
AAACCTGGTGTATTTGCCGG+TGG - chr2.2:3731879-3731898 None:intergenic 50.0%
AAGATGGTCACTCCAAGGGA+TGG + chr2.2:3734292-3734311 MS.gene051999:CDS 50.0%
AGGAGCAGCAGTGGTTATTG+GGG + chr2.2:3733361-3733380 MS.gene051999:CDS 50.0%
ATAACCACTGCTGCTCCTAC+AGG - chr2.2:3733359-3733378 None:intergenic 50.0%
ATGCCTTGACTGATGGAGCT+CGG + chr2.2:3733317-3733336 MS.gene051999:CDS 50.0%
CATGCAAGATGGTCACTCCA+AGG + chr2.2:3734287-3734306 MS.gene051999:CDS 50.0%
CTAATCGCATTCGTGCGCAA+TGG + chr2.2:3733739-3733758 MS.gene051999:intron 50.0%
CTCGGTCTAATGCATACCAC+TGG + chr2.2:3733015-3733034 MS.gene051999:CDS 50.0%
GAAGATGGAAGTAAGGTGCG+TGG + chr2.2:3734159-3734178 MS.gene051999:intron 50.0%
GGACAATGTCACAGCCAAAG+AGG - chr2.2:3731776-3731795 None:intergenic 50.0%
GTAGGAGCAGCAGTGGTTAT+TGG + chr2.2:3733359-3733378 MS.gene051999:CDS 50.0%
TGCATTAGGAACTGTCCCAG+TGG - chr2.2:3733034-3733053 None:intergenic 50.0%
! AACAGAGTTGATCTTGGCGG+TGG - chr2.2:3733060-3733079 None:intergenic 50.0%
!! GAGGGTGTTCAAGGTCTTCT+CGG + chr2.2:3732997-3733016 MS.gene051999:CDS 50.0%
ATACACACTGTCGCGCCACA+TGG + chr2.2:3734087-3734106 MS.gene051999:CDS 55.0%
CATTGGCCAAGCATGCCTGT+AGG + chr2.2:3733341-3733360 MS.gene051999:CDS 55.0%
GGTGCACGTTGGACAGAAGA+TGG + chr2.2:3734144-3734163 MS.gene051999:CDS 55.0%
TAGAGAGGGAGAGACAGTGC+CGG - chr2.2:3733940-3733959 None:intergenic 55.0%
TGCCTTGACTGATGGAGCTC+GGG + chr2.2:3733318-3733337 MS.gene051999:CDS 55.0%
! CTTGGCGGTGGAAGTGCATT+AGG - chr2.2:3733048-3733067 None:intergenic 55.0%
CATGCCTGTAGGAGCAGCAG+TGG + chr2.2:3733352-3733371 MS.gene051999:CDS 60.0%
GACTGATGGAGCTCGGGCAT+TGG + chr2.2:3733324-3733343 MS.gene051999:CDS 60.0%
GCTGCTCCTACAGGCATGCT+TGG - chr2.2:3733350-3733369 None:intergenic 60.0%
GTGCCACCGGCAAATACACC+AGG + chr2.2:3731873-3731892 MS.gene051999:CDS 60.0%
TGCCCGAGCTCCATCAGTCA+AGG - chr2.2:3733323-3733342 None:intergenic 60.0%
! ATTGAGGGGAGGTGTGCCAC+CGG + chr2.2:3731860-3731879 MS.gene051999:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 3731328 3734323 3731328 ID=MS.gene051999
chr2.2 mRNA 3731328 3734323 3731328 ID=MS.gene051999.t1;Parent=MS.gene051999
chr2.2 exon 3731328 3731471 3731328 ID=MS.gene051999.t1.exon1;Parent=MS.gene051999.t1
chr2.2 CDS 3731328 3731471 3731328 ID=cds.MS.gene051999.t1;Parent=MS.gene051999.t1
chr2.2 exon 3731548 3731608 3731548 ID=MS.gene051999.t1.exon2;Parent=MS.gene051999.t1
chr2.2 CDS 3731548 3731608 3731548 ID=cds.MS.gene051999.t1;Parent=MS.gene051999.t1
chr2.2 exon 3731846 3731894 3731846 ID=MS.gene051999.t1.exon3;Parent=MS.gene051999.t1
chr2.2 CDS 3731846 3731894 3731846 ID=cds.MS.gene051999.t1;Parent=MS.gene051999.t1
chr2.2 exon 3732133 3732187 3732133 ID=MS.gene051999.t1.exon4;Parent=MS.gene051999.t1
chr2.2 CDS 3732133 3732187 3732133 ID=cds.MS.gene051999.t1;Parent=MS.gene051999.t1
chr2.2 exon 3732266 3732353 3732266 ID=MS.gene051999.t1.exon5;Parent=MS.gene051999.t1
chr2.2 CDS 3732266 3732353 3732266 ID=cds.MS.gene051999.t1;Parent=MS.gene051999.t1
chr2.2 exon 3732564 3732682 3732564 ID=MS.gene051999.t1.exon6;Parent=MS.gene051999.t1
chr2.2 CDS 3732564 3732682 3732564 ID=cds.MS.gene051999.t1;Parent=MS.gene051999.t1
chr2.2 exon 3732985 3733110 3732985 ID=MS.gene051999.t1.exon7;Parent=MS.gene051999.t1
chr2.2 CDS 3732985 3733110 3732985 ID=cds.MS.gene051999.t1;Parent=MS.gene051999.t1
chr2.2 exon 3733313 3733400 3733313 ID=MS.gene051999.t1.exon8;Parent=MS.gene051999.t1
chr2.2 CDS 3733313 3733400 3733313 ID=cds.MS.gene051999.t1;Parent=MS.gene051999.t1
chr2.2 exon 3734019 3734173 3734019 ID=MS.gene051999.t1.exon9;Parent=MS.gene051999.t1
chr2.2 CDS 3734019 3734173 3734019 ID=cds.MS.gene051999.t1;Parent=MS.gene051999.t1
chr2.2 exon 3734264 3734323 3734264 ID=MS.gene051999.t1.exon10;Parent=MS.gene051999.t1
chr2.2 CDS 3734264 3734323 3734264 ID=cds.MS.gene051999.t1;Parent=MS.gene051999.t1
Gene Sequence

>MS.gene051999

ATGGATTCTGAATCATTTTGTAGTACGGGCTTCAATTTAGACATGATGATGATGATTATCAATGAATTTGAAAGACCTTCTATGCTGAAGAAACACAATGAATGGCACAAATTGATCGTGGAGAAGGGATCTGAAATAGTTAATGTAAATTGTTATGCATTTGTATCTTTGATTAGGCTGGTTTAAATGTAATATATGATGTTTCTTTTTGTTTCAACAGGTTTTGAAGAGTGTTTCCTTTGAACTCCATGTTCAGGAGCCTTTTTTTACCCAGCTTAAAGGTATGTATATCACTCCACAGTCTATTTGAGTAATGATCATAGCTCAGAAGAAATATGTATATTTGCTGCATAAGCAGTGTTGCCGAGTTGAATAATTATCTATTCAAATGTCCCTAAAACAGAGACTGAATAAATATTTGCATGCTAGTGACAAATGATAATAACCTCTTTGGCTGTGACATTGTCCTTCTAACTATAATTTCATTCTACAATGTCTTATGATGTTATTGCCTGCAGATGGCCTAAAAACAATTGAGGGGAGGTGTGCCACCGGCAAATACACCAGGTTTAATATACTAATTTTAATTTTAAGATAACACCAAATTGGATTTAGTCTTAATCTTATTAAGAACAATAGTCCTTGCTTCCTTCAGAATATACCGGCTCCATATGGACTTAATTGGATTTTATTATTTCTTAATAATTGACAGTTGGTTTATTATGAGATATATGTTGGTTGTTTTACTTCTCTCGTTTACTTTTCCTGTTTTGATTTTCTTTTCTTTTTTTAATTTGGGTTCTAGGATTGAATCAGGAAATCGGATTCTCTTAAATAAGTCTTTGGTGTTTGAAGTTCAGGTGATGCTTTGTTTCATCAATAATTGATTTTACTGTCTGTAATGTCTTTGATCTGTCTCTTACTTCATCAGTATATAGGGAGTAAGGCGGTATCCTTCATTCTTTGACATGTTGGAGACAGAAAGTCTTGGAGAAGTTCTTCCTGGAATTGAAAGCGTTGAAGAAGGTACCGAATGTCCTGTTTATAGATAAGTGATATGGAATAGCATGTATAACCTAGATAAACTACATACCTGCTATGAATCGTTATTTGTTCCGACATTGTATTCTTGCATTCAAATGGTTTTAATATGAAAGAACCGTCATTCAGTCCATGTCCAAGTCAATTCTAGATTTTACATGATGCCTCCGTAGTAACACTTGCATGACATTATAGGTGTAAAGATCTATCGGAGGTTTTACACAGAAGAGATGGAACAGACAAATGGCGTTCTTGCAAACACTGTTTCAAAACTCCCGGTTCAACCATACACTTCTTTGGCTAGCTTATTATCTGTGGGTTTACTTTTCTATGAAACTATAATTGAATAGTTGTTGGATTTAAAAATGATTGGTTATGAGTGTGATTTTTTCTTTGATTTGCACATTTTTGTATCTTCCTAATTGTTGATTATGATATGTGTTTAAGCATGCAGAAAAGGCAATAATCAGCTTAATAATTGTTGATTACTTACATATGTGATACATGTCTTGTTTCATGTGACTTCGTATGGACTAATGCTCGAGTATTCTCATATTGAACTTCACTGCAGAGTTAAGATAATTCTTCATTATTGTGCTGTCTTGCTTTTATCTAGGGATTGAGCTATGAGGGTGTTCAAGGTCTTCTCGGTCTAATGCATACCACTGGGACAGTTCCTAATGCACTTCCACCGCCAAGATCAACTCTGTTAGCCTCATTTAATATCCCATGCAATCTAAGTGTAAGAAAATGTCTGTTTTTTTGGGGTTAATGTTGTAGCCTTTTAGTCGCTTTTACCTCTTTCTTTTTTTGTTGGATTTATTTCTGTATATTTATGAAGAACCTTAGGAACTAGTGTCATTCCACATTGAATTGAGACTCTAAGAAAGTTTATTGACACTTAATGACAAATGATAAATGTATACTTTATGATCAATATTCAGGAAAATGCCTTGACTGATGGAGCTCGGGCATTGGCCAAGCATGCCTGTAGGAGCAGCAGTGGTTATTGGGGTTCTCTTGTTGGTAATGGTGAGTATTTTTTTTTGAAAGTGAATCTTTTAGATACATCTTCGGCAATTGCTTTTCAATTCTACCTTTGTTATCTTGGTTTTTCTTCAATCGGCTTGTTTTCCATATAGAAGATTTTAGATTGTTTTGAAAGAGCTTATTTAGAATTGTTTGACCTTATGTAATGAAAAAAAGCACTTATTTTAATATTTGAAGACACTCATAGAAAAACATATAACAGCAGTGATATTTGTGGCGAGATACATATTGCGGAGTCATTACGAAGGTGTTTTGCAAACCTACTGATGTCATTAAATTCCAAATTTTGTAGAAAACAGGATGGTAGTGATTCTAGCTGGCTAATCGCATTCGTGCGCAATGGATTCGCTATATTTTATTTCTCTGTATGTTCTTCAACATATAAATAAGCGCCAAGTTAAGAATAAGTACTCAATTAGGTTGTTTAATCAAACACTTCTTTGTCAAAGATGTTTTTAGTTTGGGTTTAATATGTTAGCTGAAATGTTTACATCAGCCAGTATACTAATAATGTGTCACCGGCACTGTCTCTCCCTCTCTAATAAGTTGATCTCATTTTTTTTTTTTTACTTATCCTGTGTTTTTTAATGTTCTTTTTAGATTCTAATAAAAACAGGCTTGCAGTCGATGTTATTAACAACTTAATAGCACACTGTTGTTGGATGAATATACACACTGTCGCGCCACATGGAGTTGTCTTTGAAATAAGGGTTGTTGATGGATATGGTGCACGTTGGACAGAAGATGGAAGTAAGGTGCGTGGACAGAAAAATAATTATATATTTTCAACTCGCAATATTGATACATATTCTTTAAGGTGTTAACCCTACGAATTTGTTTTTCAGTTCATTGGGTTTTTAGAGCCATACATGCAAGATGGTCACTCCAAGGGATGGAAACACTAG
Protein sequence

>MS.gene051999.t1

MDSESFCSTGFNLDMMMMIINEFERPSMLKKHNEWHKLIVEKGSEIVNVLKSVSFELHVQEPFFTQLKDGLKTIEGRCATGKYTRIESGNRILLNKSLVFEVQGVRRYPSFFDMLETESLGEVLPGIESVEEGVKIYRRFYTEEMEQTNGVLANTVSKLPVQPYTSLASLLSGLSYEGVQGLLGLMHTTGTVPNALPPPRSTLLASFNIPCNLSENALTDGARALAKHACRSSSGYWGSLVGNDSNKNRLAVDVINNLIAHCCWMNIHTVAPHGVVFEIRVVDGYGARWTEDGSKFIGFLEPYMQDGHSKGWKH